# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/WBS_methylT.hmm.txt # target sequence database: proteomes/Mus_musculus.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: WBS_methylT [M=82] Accession: PF12589.7 Description: Methyltransferase involved in Williams-Beuren syndrome Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.5e-19 70.8 4.3 2.5e-19 70.1 4.3 1.4 1 sp|Q9CY21|BUD23_MOUSE Probable 18S rRNA (guanine-N(7))-methy Domain annotation for each sequence (and alignments): >> sp|Q9CY21|BUD23_MOUSE Probable 18S rRNA (guanine-N(7))-methyltransferase OS=Mus musculus OX=10090 GN=Bud23 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 70.1 4.3 1.1e-23 2.5e-19 1 82 [] 204 279 .. 204 279 .. 0.83 Alignments for each domain: == domain 1 score: 70.1 bits; conditional E-value: 1.1e-23 WBS_methylT 1 LfaGkseqqqlpkglgedgeeeseeaeqvkyekrrrkrkkrkkkkkkavksreWilkKKerrrkkGkeVkrdSKYTGRkRka 82 Lf+G +++lpkgl+e+++++ +++e++ ++r+ ++k+r++ k ksreW+l+KKerrr++GkeV++d++YTGRkRk+ sp|Q9CY21|BUD23_MOUSE 204 LFSG--PSTSLPKGLTESQDAD-QASESMFTSERAPHKKARRDLVK---KSREWVLEKKERRRRQGKEVRPDTQYTGRKRKP 279 7899..899******9999554.44677767777767776666666...5******************************95 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (82 nodes) Target sequences: 22289 (11757923 residues searched) Passed MSV filter: 2118 (0.0950245); expected 445.8 (0.02) Passed bias filter: 612 (0.0274575); expected 445.8 (0.02) Passed Vit filter: 62 (0.00278164); expected 22.3 (0.001) Passed Fwd filter: 2 (8.97304e-05); expected 0.2 (1e-05) Initial search space (Z): 22289 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.18u 0.01s 00:00:00.19 Elapsed: 00:00:00.08 # Mc/sec: 12051.87 // [ok]