# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/WBS_methylT.hmm.txt # target sequence database: proteomes/Nematostella_vectensis.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: WBS_methylT [M=82] Accession: PF12589.7 Description: Methyltransferase involved in Williams-Beuren syndrome Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.9e-21 76.0 8.8 6.5e-21 75.3 8.8 1.4 1 tr|A7SWG5|A7SWG5_NEMVE Predicted protein OS=Nematostella vec Domain annotation for each sequence (and alignments): >> tr|A7SWG5|A7SWG5_NEMVE Predicted protein OS=Nematostella vectensis OX=45351 GN=v1g236029 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 75.3 8.8 2.7e-25 6.5e-21 1 82 [] 203 280 .. 203 280 .. 0.94 Alignments for each domain: == domain 1 score: 75.3 bits; conditional E-value: 2.7e-25 WBS_methylT 1 LfaGkseqqqlpkglgedgeeeseeaeqvkyekrrrkrkkrkkkkkkavksreWilkKKerrrkkGkeVkrdSKYTGRkRka 82 Lf+G + ++ lpkglg+ ++s+ ++v+y+++r+++k +++k+ k +k+++Wi KKerrr++G++V+++SKYTGRkRka tr|A7SWG5|A7SWG5_NEMVE 203 LFTG-GGNTPLPKGLGTAVGMNSQ--NTVQYSEKRERSKFERGKSLK-KKTKDWIESKKERRRRQGRDVRPNSKYTGRKRKA 280 7999.89************88876..***************999996.66******************************95 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (82 nodes) Target sequences: 24428 (8257945 residues searched) Passed MSV filter: 1805 (0.0738906); expected 488.6 (0.02) Passed bias filter: 551 (0.0225561); expected 488.6 (0.02) Passed Vit filter: 33 (0.00135091); expected 24.4 (0.001) Passed Fwd filter: 2 (8.18733e-05); expected 0.2 (1e-05) Initial search space (Z): 24428 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.11u 0.00s 00:00:00.11 Elapsed: 00:00:00.05 # Mc/sec: 13543.03 // [ok]