# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/WBS_methylT.hmm.txt # target sequence database: proteomes/Pan_troglodytes.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: WBS_methylT [M=82] Accession: PF12589.7 Description: Methyltransferase involved in Williams-Beuren syndrome Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-15 58.4 2.4 2.1e-15 57.6 2.4 1.4 1 tr|H2QUQ0|H2QUQ0_PANTR BUD23 isoform 3 OS=Pan troglodytes OX Domain annotation for each sequence (and alignments): >> tr|H2QUQ0|H2QUQ0_PANTR BUD23 isoform 3 OS=Pan troglodytes OX=9598 GN=BUD23 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 57.6 2.4 9.2e-20 2.1e-15 1 82 [] 204 296 .. 204 296 .. 0.77 Alignments for each domain: == domain 1 score: 57.6 bits; conditional E-value: 9.2e-20 WBS_methylT 1 LfaGkseqqqlpkglgedgeeeseeaeqvkyekrrrkrkkrkkkkkkavk..............sreWilkKKerrrkkGkeVkrdS 73 Lf+G ++ +p+gl+e+++e + +e+v ++r+ + +r++ + ++++ sr W+l+KKer r++G+eV++d+ tr|H2QUQ0|H2QUQ0_PANTR 204 LFSG--PSTFIPEGLSENQDEVEP-RESVFTNEREGGAFERRGIQGHQTRrfplrmsrrgmvrkSRAWVLEKKERHRRQGREVRPDT 287 7888..8999*****999976655.666666666665555544444444456777777778888*********************** PP WBS_methylT 74 KYTGRkRka 82 +YTGRkRk+ tr|H2QUQ0|H2QUQ0_PANTR 288 QYTGRKRKP 296 *******95 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (82 nodes) Target sequences: 23008 (11942255 residues searched) Passed MSV filter: 2332 (0.101356); expected 460.2 (0.02) Passed bias filter: 713 (0.0309892); expected 460.2 (0.02) Passed Vit filter: 74 (0.00321627); expected 23.0 (0.001) Passed Fwd filter: 3 (0.000130389); expected 0.2 (1e-05) Initial search space (Z): 23008 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.18u 0.01s 00:00:00.19 Elapsed: 00:00:00.08 # Mc/sec: 12240.81 // [ok]