# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/WBS_methylT.hmm.txt # target sequence database: proteomes/Trichoplax_adhaerens.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: WBS_methylT [M=82] Accession: PF12589.7 Description: Methyltransferase involved in Williams-Beuren syndrome Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.3e-20 72.5 0.4 4.1e-20 71.7 0.4 1.4 1 tr|B3S4M6|B3S4M6_TRIAD Uncharacterized protein OS=Trichoplax Domain annotation for each sequence (and alignments): >> tr|B3S4M6|B3S4M6_TRIAD Uncharacterized protein OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_28767 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 71.7 0.4 3.6e-24 4.1e-20 1 82 [] 200 282 .. 200 282 .. 0.88 Alignments for each domain: == domain 1 score: 71.7 bits; conditional E-value: 3.6e-24 WBS_methylT 1 LfaGkseqqqlpkglgedgeeeseeaeqvkyekrrrkrkkrkkkkkkavk....sreWilkKKerrrkkGkeVkrdSKYTGRkRka 82 Lf+G+++++qlp+gl+++ + a+ v+++++r + + +k+k +++ sr+Wil+KK+rrr++G e+++dSKYTGR+Rk+ tr|B3S4M6|B3S4M6_TRIAD 200 LFTGQTAAAQLPQGLDTTFS---PIANVVQFTNERFEFSGSKNKLAAPAHarkkSRDWILHKKQRRRRQGFEIRADSKYTGRRRKH 282 89*************98884...4679*******99988887776666556667******************************95 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (82 nodes) Target sequences: 11518 (5222075 residues searched) Passed MSV filter: 1056 (0.0916826); expected 230.4 (0.02) Passed bias filter: 333 (0.0289113); expected 230.4 (0.02) Passed Vit filter: 27 (0.00234416); expected 11.5 (0.001) Passed Fwd filter: 2 (0.000173641); expected 0.1 (1e-05) Initial search space (Z): 11518 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.09u 0.01s 00:00:00.10 Elapsed: 00:00:00.04 # Mc/sec: 10705.25 // [ok]