# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/WBS_methylT.hmm.txt # target sequence database: proteomes/Xenopus_tropicalis.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: WBS_methylT [M=82] Accession: PF12589.7 Description: Methyltransferase involved in Williams-Beuren syndrome Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.9e-19 70.6 4.8 3.4e-19 69.8 4.8 1.4 1 tr|Q5I031|Q5I031_XENTR BUD23, rRNA methyltransferase and rib Domain annotation for each sequence (and alignments): >> tr|Q5I031|Q5I031_XENTR BUD23, rRNA methyltransferase and ribosome maturation factor OS=Xenopus tropicalis OX=8364 GN # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 69.8 4.8 1.4e-23 3.4e-19 1 81 [. 204 279 .. 204 280 .. 0.90 Alignments for each domain: == domain 1 score: 69.8 bits; conditional E-value: 1.4e-23 WBS_methylT 1 LfaGkseqqqlpkglgedgeeeseeaeqvkyekrrrkrkkrkkkkkkavksreWilkKKerrrkkGkeVkrdSKYTGRkRk 81 LfaG ++ lpkglg++ +e+++ +++v ++++r + k ++k+ +ks++Wil+KKerrr++GkeV++d K++GRkR+ tr|Q5I031|Q5I031_XENTR 204 LFAG--VSGVLPKGLGTESAEQES-SRHVGFTNQRMRFKVTRGKSV--KKSKDWILEKKERRRRQGKEVRPDNKFSGRKRR 279 7999..999*********977665.9********999997777766..589*****************************8 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (82 nodes) Target sequences: 24182 (11782085 residues searched) Passed MSV filter: 2146 (0.0887437); expected 483.6 (0.02) Passed bias filter: 659 (0.0272517); expected 483.6 (0.02) Passed Vit filter: 57 (0.00235713); expected 24.2 (0.001) Passed Fwd filter: 4 (0.000165412); expected 0.2 (1e-05) Initial search space (Z): 24182 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.21u 0.01s 00:00:00.22 Elapsed: 00:00:00.10 # Mc/sec: 9661.31 // [ok]