# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/WD40.hmm.txt # target sequence database: proteomes/Caenorhabditis_elegans.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: WD40 [M=38] Accession: PF00400.32 Description: WD domain, G-beta repeat Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.9e-59 195.8 13.5 2e-10 41.2 0.4 7.2 7 sp|Q93847|WDR52_CAEEL WD repeat-containing protein wdr 5.3e-57 188.6 22.9 9.9e-07 29.5 0.5 9.2 8 tr|Q9TYV3|Q9TYV3_CAEEL Uncharacterized protein OS=Caeno 4.9e-56 185.6 13.5 1.3e-09 38.7 0.1 7.3 7 sp|Q17963|WDR51_CAEEL WD repeat-containing protein wdr 2.4e-51 170.7 16.4 1.1e-08 35.7 0.3 7.4 7 sp|Q9NDC9|LIS1_CAEEL Lissencephaly-1 homolog OS=Caeno 3.6e-49 163.8 17.4 2e-08 34.9 0.1 7.3 7 sp|Q23256|WDR53_CAEEL WD repeat-containing protein wdr 7.5e-48 159.7 34.1 5.9e-08 33.4 0.6 7.9 7 sp|Q93794|SEL10_CAEEL F-box/WD repeat-containing prote 3.7e-46 154.3 30.0 2.1e-09 38.0 0.8 7.2 7 sp|Q21215|GBLP_CAEEL Guanine nucleotide-binding prote 4.8e-46 154.0 15.3 3.1e-07 31.1 0.0 10.8 9 tr|Q19433|Q19433_CAEEL Uncharacterized protein OS=Caeno 1.9e-43 145.7 14.7 1.9e-07 31.8 0.1 7.3 7 tr|Q19211|Q19211_CAEEL Small Nuclear RibonucleoProtein 7.5e-43 143.8 33.5 9.3e-07 29.6 0.4 11.9 11 sp|Q11176|WDR1_CAEEL Actin-interacting protein 1 OS=C 5e-42 141.2 16.9 7.1e-07 30.0 0.0 7.1 7 tr|O02097|O02097_CAEEL Small Nuclear RibonucleoProtein 2e-41 139.3 18.4 9e-08 32.8 0.0 7.2 7 sp|P17343|GBB1_CAEEL Guanine nucleotide-binding prote 5.3e-41 138.0 13.3 4.8e-08 33.7 0.2 7.4 7 tr|Q93339|Q93339_CAEEL Yeast PRP (Splicing factor) rela 1.1e-40 137.0 5.8 6.4e-07 30.1 0.0 7.7 7 tr|U4PCM1|U4PCM1_CAEEL Polyadenylation Factor Subunit h 4e-40 135.2 27.6 1e-06 29.5 0.0 8.2 7 tr|Q9N4H7|Q9N4H7_CAEEL Coatomer subunit alpha OS=Caenor 1.1e-39 133.9 24.7 1.4e-08 35.4 0.0 7.2 7 sp|Q20636|GBB2_CAEEL Guanine nucleotide-binding prote 1.3e-39 133.6 24.7 1.7e-06 28.8 0.1 11.3 11 tr|O17939|O17939_CAEEL AIP1 (Actin Interacting Protein 5.1e-39 131.7 17.9 2.9e-07 31.2 0.5 7.3 7 tr|G5EEL2|G5EEL2_CAEEL PLeiotropic ReGulator (Vertebrat 3.8e-38 128.9 13.1 2.3e-08 34.7 0.1 9.0 8 sp|Q20168|COPB2_CAEEL Probable coatomer subunit beta' 5.9e-38 128.3 8.3 4.6e-07 30.6 0.0 6.4 6 tr|A0A1D3PDA8|A0A1D3PDA8_CAEEL Uncharacterized protein OS=Caeno 3.6e-37 125.9 22.9 6.3e-06 27.0 0.7 7.5 7 sp|Q09990|LIN23_CAEEL F-box/WD repeat-containing prote 1.2e-36 124.2 9.7 1.3e-06 29.1 0.1 7.4 7 tr|O44729|O44729_CAEEL Yeast PRP (Splicing factor) rela 2.6e-35 120.0 17.5 2.6e-07 31.4 0.6 7.4 7 tr|Q95X42|Q95X42_CAEEL Uncharacterized protein OS=Caeno 2.9e-35 119.8 28.2 9.8e-06 26.4 0.1 10.3 9 tr|O18215|O18215_CAEEL Uncharacterized protein OS=Caeno 1.1e-34 118.0 7.3 1.5e-06 28.9 0.1 6.6 6 tr|G5EE12|G5EE12_CAEEL CKA And Striatin Homolog OS=Caen 2.7e-34 116.7 20.7 1.9e-05 25.5 0.1 7.3 7 sp|Q9XW12|CIAO1_CAEEL Probable cytosolic iron-sulfur p 4.1e-33 113.0 8.5 7.9e-09 36.2 0.5 6.5 6 sp|G5EEG7|SMU1_CAEEL Smu-1 suppressor of mec-8 and un 6.3e-32 109.3 28.6 1.9e-06 28.6 0.3 11.9 10 tr|O62471|O62471_CAEEL QUInine non-avoider OS=Caenorhab 1.1e-31 108.5 8.6 1.7e-07 32.0 0.0 7.6 7 sp|Q10051|PRP19_CAEEL Pre-mRNA-processing factor 19 OS 1.6e-29 101.6 7.0 6.5e-05 23.8 0.0 6.9 6 tr|Q19864|Q19864_CAEEL Cleavage and Polyadenylation Fac 2.8e-28 97.7 1.6 4.9e-05 24.2 0.0 6.7 6 sp|O16519|GAD1_CAEEL Gastrulation defective protein 1 6.7e-28 96.5 2.4 8.7e-05 23.4 0.0 7.3 7 tr|A9D0C3|A9D0C3_CAEEL Uncharacterized protein OS=Caeno 1.8e-27 95.1 14.3 8.1e-07 29.8 0.0 5.6 5 sp|P90916|LIN53_CAEEL Probable histone-binding protein 3.4e-26 91.1 21.8 7.7e-05 23.5 0.0 10.7 8 sp|P91341|PWP2_CAEEL Periodic tryptophan protein 2 ho 7e-26 90.1 8.2 3.3e-06 27.9 0.0 6.9 5 tr|H2KZG7|H2KZG7_CAEEL NeMiTiN (Neuronal enriched MAP i 2.8e-25 88.2 9.6 0.00013 22.8 0.1 7.0 6 tr|G5EEV4|G5EEV4_CAEEL SYM-4 OS=Caenorhabditis elegans 4.6e-25 87.6 14.8 5.6e-06 27.2 0.0 7.0 6 tr|Q09649|Q09649_CAEEL FiZzy Related family OS=Caenorha 2.4e-24 85.3 5.1 0.00041 21.2 0.1 7.0 7 tr|Q19986|Q19986_CAEEL Uncharacterized protein OS=Caeno 1.3e-22 79.8 8.9 9.3e-06 26.5 0.0 6.3 5 sp|P90917|RBA1_CAEEL Probable histone-binding protein 3.3e-22 78.5 5.6 1.7e-06 28.8 0.0 6.0 5 sp|Q965S8|EIF3I_CAEEL Eukaryotic translation initiatio 1.8e-21 76.1 13.2 1.1e-06 29.3 0.5 7.3 7 sp|Q19124|A16L1_CAEEL Autophagic-related protein 16.1 2.6e-21 75.7 12.1 0.00037 21.4 0.0 8.3 7 sp|Q09589|HIRA_CAEEL Protein HIRA OS=Caenorhabditis e 3.4e-21 75.3 19.9 0.003 18.5 0.2 7.5 7 sp|Q09406|A16L2_CAEEL Autophagic-related protein 16.2 1.9e-20 72.9 10.5 6.5e-07 30.1 0.1 6.2 5 tr|G5EF68|G5EF68_CAEEL TAF (TBP-associated transcriptio 2.5e-19 69.4 0.1 0.012 16.6 0.1 6.7 5 tr|Q9N477|Q9N477_CAEEL Uncharacterized protein OS=Caeno 2.9e-19 69.2 2.6 1.8e-05 25.6 0.1 6.2 6 sp|Q9XWH0|BUB3_CAEEL Mitotic checkpoint protein bub-3 3.3e-19 69.0 11.2 1.7e-05 25.6 0.1 6.5 6 tr|Q22059|Q22059_CAEEL CDT (S. pombe CDC10 Dependent Tr 3.7e-19 68.9 6.9 9.5e-05 23.3 0.0 6.8 6 sp|Q20059|WDR48_CAEEL WD repeat-containing protein 48 4.3e-19 68.6 11.5 2.7e-05 25.0 0.1 6.2 5 sp|P90794|DCA11_CAEEL DDB1- and CUL4-associated factor 4.3e-19 68.6 34.6 0.0023 18.9 0.4 9.4 8 tr|Q9NEW7|Q9NEW7_CAEEL ELongator complex Protein Compon 7.8e-19 67.8 6.0 0.012 16.6 0.8 7.3 7 sp|O02482|UNC37_CAEEL Transcription factor unc-37 OS=C 1e-18 67.5 6.1 0.0081 17.1 0.3 7.7 7 tr|P91040|P91040_CAEEL Mtor (MTOR) associated protein, 1.6e-18 66.8 9.1 0.0013 19.7 0.1 6.4 6 sp|Q9N4A7|SEC13_CAEEL Protein SEC13 homolog OS=Caenorh 2e-18 66.6 14.7 4.7e-05 24.2 0.0 5.6 5 sp|P91343|WDR12_CAEEL Ribosome biogenesis protein WDR1 2.4e-18 66.3 2.6 0.0085 17.1 0.0 6.2 5 tr|Q23494|Q23494_CAEEL Uncharacterized protein OS=Caeno 3.1e-18 65.9 0.4 0.024 15.7 0.0 6.5 4 tr|Q9BL05|Q9BL05_CAEEL RaBConnectin related OS=Caenorha 3.2e-18 65.9 2.6 4e-05 24.4 0.2 6.4 5 tr|O44856|O44856_CAEEL Uncharacterized protein OS=Caeno 4.3e-18 65.5 11.9 1e-06 29.5 0.1 4.7 4 tr|Q9N393|Q9N393_CAEEL Uncharacterized protein OS=Caeno 7.7e-18 64.7 13.2 0.058 14.4 0.4 10.3 8 sp|O45487|EMAL_CAEEL Echinoderm microtubule-associate 1e-17 64.3 8.3 2.7e-05 25.0 0.2 5.8 5 tr|G5EFD7|G5EFD7_CAEEL Uncharacterized protein OS=Caeno 1e-17 64.3 0.0 0.0021 19.0 0.0 6.4 5 sp|Q9U2A9|BOP1_CAEEL Ribosome biogenesis protein BOP1 1.1e-17 64.2 3.7 4.4e-05 24.3 0.3 5.9 5 sp|Q18964|WDFY2_CAEEL WD repeat and FYVE domain-contai 3.3e-16 59.5 0.4 0.0011 19.9 0.0 6.5 5 tr|G5EGS3|G5EGS3_CAEEL Kinesin-like protein OS=Caenorha 3.4e-16 59.5 6.7 2.8e-06 28.1 0.1 7.4 6 sp|G5EFW7|IF122_CAEEL Intraflagellar transport protein 5e-16 59.0 15.4 0.018 16.0 1.7 7.0 6 sp|G5EES6|UFD3_CAEEL Ubiquitin fusion degradation pro 1.1e-15 57.9 11.6 0.2 12.7 0.1 8.2 8 tr|E0R7L2|E0R7L2_CAEEL Uncharacterized protein OS=Caeno 1.6e-15 57.3 7.1 0.0034 18.4 0.0 5.9 5 sp|Q93454|RAE1_CAEEL mRNA export factor rae-1 OS=Caen 2.4e-15 56.8 13.5 0.0033 18.4 0.1 5.9 5 tr|P91867|P91867_CAEEL THO Complex (Transcription facto 4.3e-15 56.0 2.0 3.3e-08 34.2 0.1 5.1 4 tr|Q4W5Q8|Q4W5Q8_CAEEL ADiPose (Drosophila obesity gene 6.1e-15 55.5 5.2 6.2e-05 23.9 2.3 5.4 4 sp|Q09373|FZY1_CAEEL WD repeat-containing protein fzy 7.6e-14 52.0 36.8 0.00074 20.4 0.1 11.8 11 tr|H2L0C5|H2L0C5_CAEEL Uncharacterized protein OS=Caeno 1.1e-13 51.6 5.1 0.049 14.7 0.0 6.5 6 sp|G5EDR3|2AB1_CAEEL Serine/threonine-protein phospha 4.2e-13 49.7 9.9 0.073 14.1 0.0 7.8 7 tr|O62477|O62477_CAEEL Uncharacterized protein OS=Caeno 7.6e-13 48.9 0.1 0.00011 23.0 0.0 5.7 4 tr|Q18403|Q18403_CAEEL Set1 WD40 repeat protein OS=Caen 1e-12 48.5 2.4 2.8e-05 24.9 0.1 4.7 2 tr|Q965W8|Q965W8_CAEEL Uncharacterized protein OS=Caeno 1.2e-12 48.2 0.4 0.0048 17.9 0.0 3.8 3 sp|Q21624|CORO_CAEEL Coronin-like protein cor-1 OS=Ca 1.8e-12 47.7 0.8 0.0085 17.1 0.0 5.6 4 tr|A5Z2V7|A5Z2V7_CAEEL Uncharacterized protein OS=Caeno 2.3e-12 47.3 3.9 5.9e-05 23.9 0.2 4.7 4 tr|Q21934|Q21934_CAEEL Uncharacterized protein OS=Caeno 1.2e-11 45.1 7.0 0.00027 21.8 0.1 5.9 5 sp|Q09309|RBBP5_CAEEL Retinoblastoma-binding protein h 4.5e-11 43.3 0.5 0.11 13.6 0.0 5.4 4 sp|P42000|UTP18_CAEEL U3 small nucleolar RNA-associate 5.3e-11 43.1 21.8 0.068 14.2 0.0 10.8 9 tr|J7S122|J7S122_CAEEL RaBConnectin related OS=Caenorha 6.1e-11 42.8 0.2 0.0059 17.6 0.1 5.0 3 tr|Q95XR3|Q95XR3_CAEEL Uncharacterized protein OS=Caeno 8.4e-11 42.4 12.0 0.38 11.9 2.0 5.8 5 tr|O45087|O45087_CAEEL DYnein Chain, light Intermediate 1e-10 42.2 21.4 0.0083 17.1 0.9 6.2 5 tr|Q9U1R7|Q9U1R7_CAEEL Actin-related protein 2/3 comple 1.1e-10 42.1 8.2 0.001 20.0 0.4 4.4 3 tr|G5EFY6|G5EFY6_CAEEL Yeast SEC homolog OS=Caenorhabdi 1.3e-10 41.8 1.0 0.1 13.7 0.0 5.9 5 tr|Q18404|Q18404_CAEEL Set1 WD40 repeat protein OS=Caen 1.6e-10 41.5 14.9 0.00031 21.6 0.1 5.8 4 sp|O45933|SEH1_CAEEL Nucleoporin SEH1 OS=Caenorhabdit 2.1e-10 41.2 21.6 0.00026 21.9 0.6 6.7 4 tr|G5EGF0|G5EGF0_CAEEL CHE-2 protein OS=Caenorhabditis 3.6e-10 40.4 7.5 0.009 17.0 0.3 5.3 3 sp|Q19317|NBEA_CAEEL Putative neurobeachin homolog OS 3.7e-10 40.4 7.8 0.00033 21.5 0.1 5.0 4 sp|Q9U1Q0|EIPR1_CAEEL EARP-interacting protein 1 OS=Ca 5.5e-10 39.8 8.1 0.0077 17.2 0.3 5.7 5 tr|Q95XL8|Q95XL8_CAEEL CHromatin Assembly Factor OS=Cae 3.5e-09 37.3 2.9 0.0036 18.3 0.2 5.3 3 tr|O16302|O16302_CAEEL Uncharacterized protein OS=Caeno 9e-09 36.0 0.6 0.017 16.2 0.0 4.8 4 tr|O16466|O16466_CAEEL AuTophaGy (Yeast Atg homolog) OS 1e-08 35.8 1.5 0.0063 17.5 0.1 4.3 3 tr|Q21115|Q21115_CAEEL Yeast SEC homolog OS=Caenorhabdi 1.8e-08 35.1 1.5 0.00015 22.6 0.2 3.2 2 tr|Q23669|Q23669_CAEEL Related to yeast Vacuolar Protei 4.4e-08 33.8 14.6 0.02 15.9 0.2 6.5 5 tr|Q9N533|Q9N533_CAEEL Uncharacterized protein OS=Caeno 9.4e-08 32.8 0.3 0.00034 21.5 0.4 3.3 2 tr|G5EBG2|G5EBG2_CAEEL Uncharacterized protein OS=Caeno 1.5e-07 32.1 4.2 0.015 16.3 0.1 4.4 3 tr|O16318|O16318_CAEEL Uncharacterized protein OS=Caeno 2.6e-07 31.4 0.2 0.026 15.6 0.0 4.4 3 tr|Q19520|Q19520_CAEEL Chromosome Transmission Fidelity 2.6e-07 31.4 5.3 0.061 14.4 0.0 4.8 3 tr|Q93759|Q93759_CAEEL Seven WD repeats, AN11 family OS 2.7e-07 31.3 0.4 0.0011 19.9 0.0 4.3 2 tr|Q19873|Q19873_CAEEL WD Repeat protein OS=Caenorhabdi 3e-07 31.2 8.1 0.012 16.6 0.0 5.0 4 sp|Q22071|MEC15_CAEEL F-box/WD repeat-containing prote 3.6e-07 30.9 0.7 0.84 10.8 0.1 4.2 3 tr|Q9U1Q3|Q9U1Q3_CAEEL CYclophyliN OS=Caenorhabditis el 3.8e-07 30.9 1.5 1.4 10.0 0.0 5.4 4 tr|G5EEZ4|G5EEZ4_CAEEL 3E324 OS=Caenorhabditis elegans 7.6e-07 29.9 12.9 0.00077 20.4 0.7 4.9 3 sp|Q9GYS1|MES6_CAEEL Polycomb protein mes-6 OS=Caenor 8.1e-07 29.8 3.8 0.006 17.5 0.8 5.2 3 tr|Q93758|Q93758_CAEEL Seven WD repeats, AN11 family OS 1.2e-06 29.2 5.7 1.5 10.0 0.0 6.9 4 tr|A0A0K3ATN9|A0A0K3ATN9_CAEEL TOMosyn synaptic protein OS=Caen 2.3e-06 28.4 1.1 5.6 8.2 0.0 5.1 4 sp|Q22830|OSM1_CAEEL Intraflagellar transport protein 6.4e-06 27.0 7.0 0.0069 17.4 0.5 5.0 3 tr|Q9NAQ2|Q9NAQ2_CAEEL Uncharacterized protein OS=Caeno 1.1e-05 26.2 2.2 2.1 9.5 0.0 4.0 3 tr|Q9XTS1|Q9XTS1_CAEEL Uncharacterized protein OS=Caeno 1.4e-05 25.9 4.3 0.0076 17.2 0.4 4.3 3 tr|H2FLM3|H2FLM3_CAEEL WD40 and FYVE domain protein OS= 1.8e-05 25.5 7.4 0.028 15.4 0.0 4.6 2 sp|Q22006|PRO1_CAEEL Pre-rRNA-processing protein pro- 1.8e-05 25.5 0.0 0.054 14.5 0.0 3.0 2 tr|Q86MP3|Q86MP3_CAEEL Ectopic P Granules OS=Caenorhabd 2.6e-05 25.0 0.2 0.02 15.9 0.0 3.4 2 tr|Q20197|Q20197_CAEEL Uncharacterized protein OS=Caeno 2.7e-05 25.0 6.1 4.7 8.4 0.1 6.0 4 tr|K8ESK9|K8ESK9_CAEEL Uncharacterized protein OS=Caeno 2.9e-05 24.9 4.8 1.6 9.9 0.1 6.1 3 tr|Q18859|Q18859_CAEEL IntraFlagellar Transport Associa 3.6e-05 24.6 11.0 0.046 14.8 0.0 4.8 3 tr|Q18968|Q18968_CAEEL SREBP Cleavage activating Protei 4.3e-05 24.4 8.9 0.0029 18.6 0.0 3.9 2 sp|Q10122|SORF2_CAEEL Suppressor of organelle fusion 2 0.00041 21.3 2.5 2.6 9.2 0.0 5.1 3 sp|D9N129|WDR20_CAEEL WD repeat-containing protein 20 0.0013 19.7 0.0 0.63 11.2 0.0 3.6 2 sp|Q09392|YR49_CAEEL Uncharacterized WD repeat-contai 0.003 18.5 3.2 78 4.5 0.0 5.8 3 sp|G5ECZ4|DYF2_CAEEL WD repeat-containing protein dyf 0.0045 18.0 0.0 0.07 14.2 0.0 2.9 1 tr|Q22540|Q22540_CAEEL Uncharacterized protein OS=Caeno 0.006 17.6 0.0 0.12 13.4 0.0 2.5 2 tr|A5A8P6|A5A8P6_CAEEL Uncharacterized protein OS=Caeno 0.0067 17.4 7.9 0.96 10.6 0.0 4.3 2 tr|Q17872|Q17872_CAEEL Nuclear Pore complex Protein OS= ------ inclusion threshold ------ 0.01 16.8 0.6 16 6.7 0.0 4.7 2 tr|Q68TI8|Q68TI8_CAEEL DAF-15 OS=Caenorhabditis elegans 0.011 16.8 0.0 0.44 11.6 0.0 2.7 2 sp|P34441|EMB30_CAEEL Abnormal embryogenesis protein 3 0.015 16.3 0.1 5.9 8.1 0.0 4.3 2 sp|Q9XWI6|EIF3B_CAEEL Eukaryotic translation initiatio 0.018 16.0 0.4 26 6.1 0.2 3.6 2 sp|Q23232|WDR4_CAEEL tRNA (guanine-N(7)-)-methyltrans 0.03 15.3 0.2 0.35 12.0 0.3 2.9 1 tr|Q9N4T4|Q9N4T4_CAEEL Uncharacterized protein OS=Caeno 0.035 15.2 4.8 16 6.7 0.1 3.5 3 tr|Q18963|Q18963_CAEEL Cockayne Syndrome complementatio 0.04 15.0 5.7 5.5 8.2 0.0 4.9 3 tr|P91364|P91364_CAEEL Uncharacterized protein OS=Caeno 0.14 13.2 4.2 0.78 10.9 0.1 3.7 2 tr|Q9BL53|Q9BL53_CAEEL TUBby-related OS=Caenorhabditis 0.5 11.5 6.3 24 6.2 0.1 4.4 2 tr|O17001|O17001_CAEEL Uncharacterized protein OS=Caeno Domain annotation for each sequence (and alignments): >> sp|Q93847|WDR52_CAEEL WD repeat-containing protein wdr-5.2 OS=Caenorhabditis elegans OX=6239 GN=wdr-5.2 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.8 0.0 2.3e-08 3.4e-06 8 37 .. 104 134 .. 96 135 .. 0.89 2 ! 22.8 0.1 8.9e-07 0.00013 5 38 .] 142 176 .. 139 176 .. 0.91 3 ! 41.2 0.4 1.3e-12 2e-10 1 37 [. 180 217 .. 180 218 .. 0.96 4 ! 40.9 0.1 1.7e-12 2.5e-10 2 38 .] 223 260 .. 222 260 .. 0.93 5 ! 25.3 0.0 1.4e-07 2.1e-05 1 38 [] 264 303 .. 264 303 .. 0.87 6 ! 25.2 0.1 1.6e-07 2.4e-05 3 38 .] 309 348 .. 307 348 .. 0.91 7 ! 15.8 0.0 0.00014 0.021 2 37 .. 353 391 .. 352 392 .. 0.86 Alignments for each domain: == domain 1 score: 27.8 bits; conditional E-value: 2.3e-08 ESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 8 tGH.ssvtslafspdgawlasGsdDgtvriW 37 +H +s+++++fspdg+++ sGs D++++iW sp|Q93847|WDR52_CAEEL 104 NAHkKSISGIKFSPDGRYMGSGSADCSIKIW 134 58*999************87999******** PP == domain 2 score: 22.8 bits; conditional E-value: 8.9e-07 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +tl GH +++ +++s+d+++++s+sdD+ v+++d sp|Q93847|WDR52_CAEEL 142 KTLMGHrLGINEFSWSSDSKLIVSCSDDKLVKVFD 176 56779*877************************98 PP == domain 3 score: 41.2 bits; conditional E-value: 1.3e-12 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 g+c++tl+GH + v +++f+p+g+++asGs D t+riW sp|Q93847|WDR52_CAEEL 180 GRCVKTLKGHtNYVFCCCFNPSGTLIASGSFDETIRIW 217 68********888************************* PP == domain 4 score: 40.9 bits; conditional E-value: 1.7e-12 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +++ ++ GH ++v+s++f++dga+lasGs+Dg vriWd sp|Q93847|WDR52_CAEEL 223 NTIFSIPGHeDPVSSVCFNRDGAYLASGSYDGIVRIWD 260 6677889**999*************************9 PP == domain 5 score: 25.3 bits; conditional E-value: 1.4e-07 TEEEEEEE..SSSSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 1 gqclrtlt..GHssvtslafspdgawlasGsdDgtvriWd 38 g+c++tl H ++t+++fsp+g++++++ ++t+++Wd sp|Q93847|WDR52_CAEEL 264 GTCVKTLIdeEHPPITHVKFSPNGKYILASNLNNTLKLWD 303 57999995458866**************9988*******9 PP == domain 6 score: 25.2 bits; conditional E-value: 1.6e-07 EEEEEESS.SSEEEEE...EETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtsla...fspdgawlasGsdDgtvriWd 38 l+++tGH +s +++a g+w++sGs+D++v+iW+ sp|Q93847|WDR52_CAEEL 309 VLKEYTGHeNSKYCVAanfSVTGGKWIVSGSEDHKVYIWN 348 5889****9998999999999999***************8 PP == domain 7 score: 15.8 bits; conditional E-value: 0.00014 EEEEEEESS.SSEEEEEEETTSSEEEEEET..TSEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsd..DgtvriW 37 + l+tl+GH + v + + +p ++ +as+ D ++iW sp|Q93847|WDR52_CAEEL 353 EILQTLDGHnTAVMCTDCHPGQNIIASAALepDMRIKIW 391 5789*****666*99999*******9887568******* PP >> tr|Q9TYV3|Q9TYV3_CAEEL Uncharacterized protein OS=Caenorhabditis elegans OX=6239 GN=CELE_W07E6.2 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.9 0.0 2.1e-08 3.1e-06 2 38 .] 96 133 .. 95 133 .. 0.90 2 ! 29.5 0.5 6.6e-09 9.9e-07 3 38 .] 139 175 .. 137 175 .. 0.95 3 ! 22.2 0.1 1.3e-06 0.0002 3 38 .] 182 223 .. 180 223 .. 0.81 4 ! 26.6 0.4 5.7e-08 8.6e-06 3 37 .. 229 263 .. 227 264 .. 0.85 5 ? 9.6 0.2 0.013 1.9 8 38 .] 275 345 .. 269 345 .. 0.68 6 ! 25.0 0.0 1.8e-07 2.7e-05 6 37 .. 355 387 .. 350 388 .. 0.89 7 ! 29.4 0.0 7e-09 1e-06 1 37 [. 392 429 .. 392 430 .. 0.94 8 ! 26.4 0.0 6.3e-08 9.5e-06 6 37 .. 439 471 .. 434 472 .. 0.89 Alignments for each domain: == domain 1 score: 27.9 bits; conditional E-value: 2.1e-08 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +c ++ GH +v s +fspdg+ lasGs D+t riWd tr|Q9TYV3|Q9TYV3_CAEEL 96 RCSASIPGHgEPVISAQFSPDGRGLASGSGDQTMRIWD 133 5888999**77776888***********99*******9 PP == domain 2 score: 29.5 bits; conditional E-value: 6.6e-09 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +l+t++ H s+v ++a+spd + +as++++g + iW+ tr|Q9TYV3|Q9TYV3_CAEEL 139 PLHTCKSHkSWVLCIAWSPDATKIASACKNGEICIWN 175 79******777*************************8 PP == domain 3 score: 22.2 bits; conditional E-value: 1.3e-06 EEEEEESS.SSEEEEE.....EETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtsla.....fspdgawlasGsdDgtvriWd 38 +tl+ H +++tsla +p ++las+++Dg++ iWd tr|Q9TYV3|Q9TYV3_CAEEL 182 IGKTLKRHkQWITSLAwqpmhKDPTCRLLASCGKDGNIFIWD 223 5689999*888****86666666666669************9 PP == domain 4 score: 26.6 bits; conditional E-value: 5.7e-08 EEEEEESS.SSEEEEEEETTSSE.....EEEEETTSEEEEE CS WD40 3 clrtltGH.ssvtslafspdgaw.....lasGsdDgtvriW 37 +r l+GH svt+l +w + sGs D+tv++W tr|Q9TYV3|Q9TYV3_CAEEL 229 VVRCLSGHtASVTCL------RWggeglIYSGSQDRTVKMW 263 6899****888****......777777558*********** PP == domain 5 score: 9.6 bits; conditional E-value: 0.013 ESS.SSEEEEEEETTSSE.......................................EEEEETTSEEEEEE CS WD40 8 tGH.ssvtslafspdgaw.......................................lasGsdDgtvriWd 38 tGH +++ la + d a+ l+sGsdD t+ +W+ tr|Q9TYV3|Q9TYV3_CAEEL 275 TGHaHWINTLALNTDYALrtscfepskrcikpdtveecqkvaqtryeaaleiaggerLVSGSDDFTLFMWN 345 677444777774444444444444444447777777777777777777777777777999**********8 PP == domain 6 score: 25.0 bits; conditional E-value: 1.8e-07 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 6 tltGH.ssvtslafspdgawlasGsdDgtvriW 37 tGH + v+ + fspd +++as+s D++v++W tr|Q9TYV3|Q9TYV3_CAEEL 355 RMTGHmQLVNQVVFSPDTRYIASASFDKSVKLW 387 568**888****************99******* PP == domain 7 score: 29.4 bits; conditional E-value: 7e-09 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 g+ l +l+GH ++v+ +a+s d+++l+sGs D t++++ tr|Q9TYV3|Q9TYV3_CAEEL 392 GKYLASLRGHvGPVYQVAWSADSRLLVSGSADSTLKVF 429 577999****999***********************97 PP == domain 8 score: 26.4 bits; conditional E-value: 6.3e-08 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 6 tltGH.ssvtslafspdgawlasGsdDgtvriW 37 l GH + v +++sp+g+ ++sG++D+ +++W tr|Q9TYV3|Q9TYV3_CAEEL 439 DLPGHgDEVFTVDWSPEGTKVVSGGKDKVLKLW 471 578**666************************* PP >> sp|Q17963|WDR51_CAEEL WD repeat-containing protein wdr-5.1 OS=Caenorhabditis elegans OX=6239 GN=wdr-5.1 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 31.6 0.0 1.5e-09 2.2e-07 2 38 .] 78 115 .. 77 115 .. 0.90 2 ! 31.0 0.1 2.2e-09 3.4e-07 3 37 .. 121 156 .. 119 157 .. 0.93 3 ! 33.2 0.1 4.6e-10 7e-08 4 38 .] 164 199 .. 161 199 .. 0.93 4 ! 38.7 0.1 8.5e-12 1.3e-09 2 38 .] 204 241 .. 203 241 .. 0.94 5 ! 20.5 0.0 4.5e-06 0.00068 1 38 [] 245 284 .. 245 284 .. 0.87 6 ! 22.2 0.2 1.4e-06 0.00021 1 38 [] 288 329 .. 288 329 .. 0.79 7 ! 12.0 0.0 0.0024 0.35 3 37 .. 335 372 .. 333 373 .. 0.85 Alignments for each domain: == domain 1 score: 31.6 bits; conditional E-value: 1.5e-09 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +++ tl+GH +s++s +fsp g++l ++s D+tv+iW+ sp|Q17963|WDR51_CAEEL 78 KLMCTLEGHtKSISSAKFSPCGKYLGTSSADKTVKIWN 115 56789*****99************966778*******8 PP == domain 2 score: 31.0 bits; conditional E-value: 2.2e-09 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 c rtltGH +v+++a+s+d++ ++s+sdD+t++i+ sp|Q17963|WDR51_CAEEL 121 CERTLTGHkLGVNDIAWSSDSRCVVSASDDKTLKIF 156 889*****766***********************97 PP == domain 3 score: 33.2 bits; conditional E-value: 4.6e-10 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++tl+GH + v ++ f+p +++++sGs D +vriWd sp|Q17963|WDR51_CAEEL 164 TKTLKGHnNYVFCCNFNPQSSLVVSGSFDESVRIWD 199 689****777*************************9 PP == domain 4 score: 38.7 bits; conditional E-value: 8.5e-12 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 c++tl +H ++v++++f++dg+++asGs+Dg vriWd sp|Q17963|WDR51_CAEEL 204 MCIKTLPAHsDPVSAVSFNRDGSLIASGSYDGLVRIWD 241 69*******666*************************9 PP == domain 5 score: 20.5 bits; conditional E-value: 4.5e-06 TEEEEEEESS.SS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 1 gqclrtltGH.ss.vtslafspdgawlasGsdDgtvriWd 38 gqc++tl ++ v ++fsp+g++++++ D t+++Wd sp|Q17963|WDR51_CAEEL 245 GQCIKTLVDDeNPpVAFVKFSPNGKYILASNLDSTLKLWD 284 6899998766666799999*********9988*******9 PP == domain 6 score: 22.2 bits; conditional E-value: 1.4e-06 TEEEEEEESS.SS...EEEEE...EETTSSEEEEEETTSEEEEEE CS WD40 1 gqclrtltGH.ss...vtsla...fspdgawlasGsdDgtvriWd 38 g++l+ +tGH +s + g+w++sGs+D++++iW+ sp|Q17963|WDR51_CAEEL 288 GKTLKQYTGHeNSkycI---FanfSVTGGKWIISGSEDCKIYIWN 329 678999****9885663...444455667***************8 PP == domain 7 score: 12.0 bits; conditional E-value: 0.0024 EEEEEESS.SSEEEEEEETTSSEEEEEET..TSEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsd..DgtvriW 37 ++ l+GH ++v + + +p ++ +asG D++++iW sp|Q17963|WDR51_CAEEL 335 IVQCLEGHtQPVLASDCHPVQNIIASGALepDNKIHIW 372 578899**999977777********998568******* PP >> sp|Q9NDC9|LIS1_CAEEL Lissencephaly-1 homolog OS=Caenorhabditis elegans OX=6239 GN=lis-1 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.1 0.0 2.8e-05 0.0042 5 38 .] 100 134 .. 97 134 .. 0.81 2 ! 26.8 0.1 4.9e-08 7.3e-06 1 38 [] 138 176 .. 138 176 .. 0.93 3 ! 35.7 0.3 7.3e-11 1.1e-08 2 38 .] 182 219 .. 181 219 .. 0.93 4 ! 24.5 0.3 2.6e-07 3.9e-05 2 38 .] 224 261 .. 223 261 .. 0.92 5 ! 18.3 0.0 2.3e-05 0.0034 6 38 .] 270 318 .. 266 318 .. 0.90 6 ! 29.4 0.0 7.2e-09 1.1e-06 3 37 .. 324 359 .. 322 360 .. 0.91 7 ! 24.0 0.0 3.7e-07 5.5e-05 2 37 .. 365 401 .. 364 402 .. 0.91 Alignments for each domain: == domain 1 score: 18.1 bits; conditional E-value: 2.8e-05 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++ltGH ++t + f+p + +as+s+D t+++Wd sp|Q9NDC9|LIS1_CAEEL 100 QKLTGHrLPITRVIFHPLWTIMASCSEDATIKVWD 134 6799**888****5554444589***********9 PP == domain 2 score: 26.8 bits; conditional E-value: 4.9e-08 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 gq+ rtl+GH + v+++a + g+ l+s+s D ++++Wd sp|Q9NDC9|LIS1_CAEEL 138 GQLERTLKGHtDAVNDIAIDAAGKQLVSCSSDLSIKLWD 176 68899*****666****************88*******9 PP == domain 3 score: 35.7 bits; conditional E-value: 7.3e-11 EEEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 +cl++l+GH + v+s+ f p g++++s+s+D+t++ Wd sp|Q9NDC9|LIS1_CAEEL 182 DCLKSLKGHEHtVSSVTFLPTGDFVLSASRDHTIKQWD 219 79*******445*************************9 PP == domain 4 score: 24.5 bits; conditional E-value: 2.6e-07 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 c++t++GH ++v+ ++ s dg+++as+s D+tv +W+ sp|Q9NDC9|LIS1_CAEEL 224 YCVYTFRGHnDWVRMIRISNDGTLFASASLDQTVTVWS 261 69*******555**999********************5 PP == domain 5 score: 18.3 bits; conditional E-value: 2.3e-05 EEESS.SSEEEEEEETTSSE...............EEEEETTSEEEEEE CS WD40 6 tltGH.ssvtslafspdgaw...............lasGsdDgtvriWd 38 +l+ H v ++ + pd a+ l+sGs+D++++ W+ sp|Q9NDC9|LIS1_CAEEL 270 VLRDHeHAVECVEWAPDTAYtnvtgqqpegnsthiLFSGSRDRSIKAWN 318 57788445**************************988***********8 PP == domain 6 score: 29.4 bits; conditional E-value: 7.2e-09 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 l tl +H ++v++laf+p g++l+s dD+t+r+W sp|Q9NDC9|LIS1_CAEEL 324 VLFTLLAHeNWVRGLAFHPKGKYLISVADDKTLRVW 359 678899**999**************9999******* PP == domain 7 score: 24.0 bits; conditional E-value: 3.7e-07 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 +c++ +++H +v+ +af++ ++++++Gs D ++++W sp|Q9NDC9|LIS1_CAEEL 365 RCMKAIEAHeHFVSTVAFHQTSPFVITGSVDMSCKVW 401 68999999*656************************* PP >> sp|Q23256|WDR53_CAEEL WD repeat-containing protein wdr-5.3 OS=Caenorhabditis elegans OX=6239 GN=wdr-5.3 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.9 0.2 4.1e-07 6.1e-05 2 38 .] 204 241 .. 203 241 .. 0.93 2 ! 26.3 0.1 6.7e-08 1e-05 4 38 .] 248 283 .. 245 283 .. 0.91 3 ! 34.9 0.1 1.4e-10 2e-08 1 38 [] 287 325 .. 287 325 .. 0.95 4 ! 31.1 0.7 2.1e-09 3.2e-07 3 38 .] 331 367 .. 329 367 .. 0.93 5 ! 25.9 0.1 9e-08 1.4e-05 1 38 [] 371 410 .. 371 410 .. 0.90 6 ! 11.4 0.0 0.0034 0.52 3 38 .] 416 455 .. 414 455 .. 0.73 7 ! 17.2 0.0 5.1e-05 0.0076 2 37 .. 460 498 .. 459 499 .. 0.91 Alignments for each domain: == domain 1 score: 23.9 bits; conditional E-value: 4.1e-07 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++++t++GH +sv+ ++fs g++l +Gs D+ +++W+ sp|Q23256|WDR53_CAEEL 204 SLVKTISGHtKSVSVIKFSYCGKYLGTGSADKQIKVWN 241 57899*****99*9999*******989**********8 PP == domain 2 score: 26.3 bits; conditional E-value: 6.7e-08 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 l+tl H +++++++s++++++as+sdD tv+i+d sp|Q23256|WDR53_CAEEL 248 LQTLASHqLGINDFSWSSNSQFIASASDDTTVKIFD 283 7889999767************************98 PP == domain 3 score: 34.9 bits; conditional E-value: 1.4e-10 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 g clrt +GH + v +++f+p ++++as++ D tvr+Wd sp|Q23256|WDR53_CAEEL 287 GACLRTMRGHtNYVFCCSFNPQSSLIASAGFDETVRVWD 325 57********888**************9988*******9 PP == domain 4 score: 31.1 bits; conditional E-value: 2.1e-09 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 c++ + +H +++ts+++++dg+ +a++s+Dg +r+Wd sp|Q23256|WDR53_CAEEL 331 CVKCIPAHsDPITSISYNHDGNTMATSSYDGCIRVWD 367 889999**666*************************9 PP == domain 5 score: 25.9 bits; conditional E-value: 9e-08 TEEEEEE..ESSSSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 1 gqclrtl..tGHssvtslafspdgawlasGsdDgtvriWd 38 g+cl+tl t H +vt ++fsp+g++l+s+ D ++++Wd sp|Q23256|WDR53_CAEEL 371 GSCLKTLvdTDHAPVTFVCFSPNGKYLLSAQLDSSLKLWD 410 68999995558999**************9967*******9 PP == domain 6 score: 11.4 bits; conditional E-value: 0.0034 EEEEEESS.SSEEEEE...EETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtsla...fspdgawlasGsdDgtvriWd 38 +l+ + GH + ++l p g+ ++sGs+Dg + +W+ sp|Q23256|WDR53_CAEEL 416 PLKYYNGHkNKKYCLFanmSVPLGKHIISGSEDGRILVWS 455 6677788854456665555557777799***********5 PP == domain 7 score: 17.2 bits; conditional E-value: 5.1e-05 EEEEEEESS.SSEEEEEEETTSSEEEEEET..TSEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsd..DgtvriW 37 q +++l+GH ++v + + +p + +asG+ D+ +riW sp|Q23256|WDR53_CAEEL 460 QIVQILEGHtTPVLATDSHPTLNIIASGGLepDNVIRIW 498 67899****999****************9668******* PP >> sp|Q93794|SEL10_CAEEL F-box/WD repeat-containing protein sel-10 OS=Caenorhabditis elegans OX=6239 GN=sel-10 PE=1 SV= # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.5 0.7 2.2e-06 0.00033 6 37 .. 250 281 .. 247 282 .. 0.82 2 ! 25.6 0.5 1.1e-07 1.7e-05 2 38 .] 287 324 .. 286 324 .. 0.87 3 ! 27.4 0.2 3e-08 4.6e-06 1 38 [] 328 364 .. 328 364 .. 0.85 4 ! 28.1 0.6 1.8e-08 2.7e-06 2 38 .] 369 404 .. 368 404 .. 0.91 5 ! 31.2 0.1 1.9e-09 2.9e-07 1 38 [] 408 446 .. 408 446 .. 0.95 6 ! 13.3 0.1 0.00089 0.13 2 38 .] 454 489 .. 453 489 .. 0.74 7 ! 33.4 0.6 3.9e-10 5.9e-08 1 38 [] 493 530 .. 493 530 .. 0.92 Alignments for each domain: == domain 1 score: 21.5 bits; conditional E-value: 2.2e-06 EEESS.SS.EEEEEEETTSSEEEEEETTSEEEEE CS WD40 6 tltGH.ss.vtslafspdgawlasGsdDgtvriW 37 +l+GH ++ +t++ + + + l++GsdD+t+++W sp|Q93794|SEL10_CAEEL 250 VLRGHeDHvITCM--QIHDDVLVTGSDDNTLKVW 281 799**87766***..44555589*********** PP == domain 2 score: 25.6 bits; conditional E-value: 1.1e-07 EEEEEEESS.SSE.EEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssv.tslafspdgawlasGsdDgtvriWd 38 + ++tl GH ++v ts+ s+ g++++sGs D+tv++W+ sp|Q93794|SEL10_CAEEL 287 EVMYTLVGHtGGVwTSQ-ISQCGRYIVSGSTDRTVKVWS 324 66899****88895555.9*******************5 PP == domain 3 score: 27.4 bits; conditional E-value: 3e-08 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 g++l+tl GH s v+++ g+ l++Gs+D t+r+Wd sp|Q93794|SEL10_CAEEL 328 GSLLHTLQGHtSTVRCM--AMAGSILVTGSRDTTLRVWD 364 5789******777****..44555599***********9 PP == domain 4 score: 28.1 bits; conditional E-value: 1.8e-08 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++l tl GH v+++ + dg+ ++sG++D tv+iW+ sp|Q93794|SEL10_CAEEL 369 RHLATLHGHhAAVRCV--QFDGTTVVSGGYDFTVKIWN 404 67899****777****..88*****************8 PP == domain 5 score: 31.2 bits; conditional E-value: 1.9e-09 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 g+c+rtltGH + v+sl f ++ + ++sGs D ++r+Wd sp|Q93794|SEL10_CAEEL 408 GRCIRTLTGHnNRVYSLLFESERSIVCSGSLDTSIRVWD 446 68********777*************************9 PP == domain 6 score: 13.3 bits; conditional E-value: 0.00089 EEEEEEESSSSEE.EEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGHssvt.slafspdgawlasGsdDgtvriWd 38 +c+ l GH+s t ++ + g+ l+s+ D +vr+Wd sp|Q93794|SEL10_CAEEL 454 ECVALLQGHTSLTsGM--QLRGNILVSCNADSHVRVWD 489 6888899996663344..33566699**88*******9 PP == domain 7 score: 33.4 bits; conditional E-value: 3.9e-10 TEEEEEEESS.SSEEEEEEETTSSE.....EEEEETTSEEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgaw.....lasGsdDgtvriWd 38 g+c++ l+GH s +tsl +w +a++sdDgtv++Wd sp|Q93794|SEL10_CAEEL 493 GTCVHMLSGHrSAITSL------QWfgrnmVATSSDDGTVKLWD 530 68********999****......99888878999*********9 PP >> sp|Q21215|GBLP_CAEEL Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Caenorhabditis elegans OX=6239 GN=r # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.5 0.1 5.3e-07 7.9e-05 2 38 .] 7 46 .. 6 46 .. 0.90 2 ! 38.0 0.8 1.4e-11 2.1e-09 1 38 [] 59 97 .. 59 97 .. 0.95 3 ! 31.2 0.2 1.9e-09 2.9e-07 4 38 .] 104 139 .. 101 139 .. 0.93 4 ! 16.8 1.4 6.9e-05 0.01 2 38 .] 143 184 .. 142 184 .. 0.84 5 ! 26.9 0.2 4.6e-08 6.9e-06 8 38 .] 195 226 .. 187 226 .. 0.87 6 ! 20.8 0.1 3.8e-06 0.00057 1 38 [] 230 266 .. 230 266 .. 0.88 7 ! 14.9 0.1 0.00027 0.04 13 37 .. 294 317 .. 281 318 .. 0.82 Alignments for each domain: == domain 1 score: 23.5 bits; conditional E-value: 5.3e-07 EEEEEEESS.SSEEEEE..EETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtsla..fspdgawlasGsdDgtvriWd 38 ++++tl+GH ++vt +a + d++ ++s+s+D+t+ +Wd sp|Q21215|GBLP_CAEEL 7 KLTGTLEGHtGWVTQIAtyTRNDKTTVLSSSRDKTILVWD 46 67899****888*****99888888899***********9 PP == domain 2 score: 38.0 bits; conditional E-value: 1.4e-11 TEEEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 1 gqclrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 g+++r+ltGH++ v+++ s+dg++ +sGs+D+t+r+Wd sp|Q21215|GBLP_CAEEL 59 GRPVRSLTGHNHfVSDVVISSDGQFALSGSWDKTLRLWD 97 689*******777************99***********9 PP == domain 3 score: 31.2 bits; conditional E-value: 1.9e-09 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +r + H ++v s+afs d++ ++sGs+D+++++W+ sp|Q21215|GBLP_CAEEL 104 TRQFISHtKDVLSVAFSADNRQIVSGSRDKSIKLWN 139 677999*999*************************8 PP == domain 4 score: 16.8 bits; conditional E-value: 6.9e-05 EEEEEEE..SS.SSEEEEEEETTSSE..EEEEETTSEEEEEE CS WD40 2 qclrtlt..GH.ssvtslafspdgaw..lasGsdDgtvriWd 38 qc +t+t H ++v+ ++fsp+++ ++s+++D+ v++W+ sp|Q21215|GBLP_CAEEL 143 QCKYTITddCHtDWVSTVRFSPSNRDpvIVSAGWDKVVKVWN 184 56666656699777*****999999998899**********8 PP == domain 5 score: 26.9 bits; conditional E-value: 4.6e-08 ESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 8 tGH.ssvtslafspdgawlasGsdDgtvriWd 38 GH + v+ + +spdg++ asG++Dg ++Wd sp|Q21215|GBLP_CAEEL 195 IGHtGYVNTVTVSPDGSLCASGGKDGQAMLWD 226 49*666*************************9 PP == domain 6 score: 20.8 bits; conditional E-value: 3.8e-06 TEEEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 1 gqclrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 g++l+tl G + +++++fsp+ wl+++ +++iWd sp|Q21215|GBLP_CAEEL 230 GKHLYTLPGN-DvINAMSFSPNRYWLCAAV-GSSIKIWD 266 678999****.747***********97655.*******9 PP == domain 7 score: 14.9 bits; conditional E-value: 0.00027 EEEEEEETTSSEEEEEETTSEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriW 37 + sla+s+dg+ l++G D+ +r++ sp|Q21215|GBLP_CAEEL 294 I-SLAWSQDGQTLFAGYTDNIIRVY 317 6.999***********88*****98 PP >> tr|Q19433|Q19433_CAEEL Uncharacterized protein OS=Caenorhabditis elegans OX=6239 GN=CELE_F13H8.2 PE=1 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 10.2 0.0 0.0083 1.3 11 38 .] 61 88 .. 51 88 .. 0.88 2 ! 31.1 0.0 2.1e-09 3.1e-07 7 38 .] 99 131 .. 95 131 .. 0.95 3 ! 14.0 0.0 0.00053 0.08 6 38 .] 140 173 .. 135 173 .. 0.90 4 ! 14.1 0.2 0.00049 0.074 9 38 .] 407 436 .. 398 436 .. 0.89 5 ? 4.3 0.0 0.61 92 7 34 .. 446 475 .. 440 479 .. 0.79 6 ! 18.8 0.0 1.6e-05 0.0024 6 38 .] 488 521 .. 483 521 .. 0.88 7 ! 25.7 0.2 1e-07 1.6e-05 6 37 .. 581 613 .. 575 613 .. 0.90 8 ! 19.2 0.5 1.2e-05 0.0018 1 38 [] 618 657 .. 618 657 .. 0.92 9 ! 14.5 0.1 0.00037 0.055 5 37 .. 665 698 .. 663 699 .. 0.86 Alignments for each domain: == domain 1 score: 10.2 bits; conditional E-value: 0.0083 SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 11 ssvtslafspdgawlasGsdDgtvriWd 38 +++++++ + ++++la G Dg+v++++ tr|Q19433|Q19433_CAEEL 61 KPISCVRQCENKPLLAIGYADGSVKLFN 88 679***************99******97 PP == domain 2 score: 31.1 bits; conditional E-value: 2.1e-09 EESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 7 ltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++GH + v+++ fs+dg ++a+G++Dg + +Wd tr|Q19433|Q19433_CAEEL 99 FSGHkKAVNCIEFSSDGLLFATGGKDGVIVLWD 131 89**888*************************9 PP == domain 3 score: 14.0 bits; conditional E-value: 0.00053 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 6 tltGH.ssvtslafspdgawlasGsdDgtvriWd 38 l GH svt ++f + ++++s s+D +++W+ tr|Q19433|Q19433_CAEEL 140 RLHGHkESVTQMKFVRGDRFIISTSKDSLIKFWS 173 478**877*************************5 PP == domain 4 score: 14.1 bits; conditional E-value: 0.00049 SS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 9 GH.ssvtslafspdgawlasGsdDgtvriWd 38 GH +v++l++s+++++lasG+ + v +W+ tr|Q19433|Q19433_CAEEL 407 GHrEDVRALCVSSSSSLLASGG-GNEVIVWS 436 9*999*****************.99999995 PP == domain 5 score: 4.3 bits; conditional E-value: 0.61 EESS..SSEEEEEEETTSSEEEEEETTSEE CS WD40 7 ltGH..ssvtslafspdgawlasGsdDgtv 34 lt +++ ++ f p +++++G+++g + tr|Q19433|Q19433_CAEEL 446 LTDNdiKDIVAVNFVPGDNYILTGGKNGEI 475 5555456788999************99877 PP == domain 6 score: 18.8 bits; conditional E-value: 1.6e-05 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 6 tltGH.ssvtslafspdgawlasGsdDgtvriWd 38 t ++H + ++ +++spd+ ++++s D+tvr+W+ tr|Q19433|Q19433_CAEEL 488 TRKAHtGAIWTIQNSPDNEGFITASADKTVRFWS 521 5579*767*************************5 PP == domain 7 score: 25.7 bits; conditional E-value: 1e-07 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 6 tltGH.ssvtslafspdgawlasGsdDgtvriW 37 +l GH +vt+++ p++++ ++Gs D++v++W tr|Q19433|Q19433_CAEEL 581 SLYGHsLPVTCVDIAPSSKLCVTGSVDKSVKVW 613 678**555************************* PP == domain 8 score: 19.2 bits; conditional E-value: 1.2e-05 TEEEEEEESS.SSEEEEEEETTSSEEE.EEETTSEEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgawla.sGsdDgtvriWd 38 g+c +++ +H + vts+ f+p l+ s+++Dg+++ Wd tr|Q19433|Q19433_CAEEL 618 GDCHKSFHAHdDAVTSVLFCPGEEQLFwSAGKDGKIKQWD 657 578999****666*************999999*******9 PP == domain 9 score: 14.5 bits; conditional E-value: 0.00037 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvriW 37 ++l+ H ++++la +g+ ++s+s D+++r W tr|Q19433|Q19433_CAEEL 665 QVLDRHtLDIRCLAQFTNGSVMFSASHDKSIRCW 698 566778667*****999****999999******* PP >> tr|Q19211|Q19211_CAEEL Small Nuclear RibonucleoProtein homolog OS=Caenorhabditis elegans OX=6239 GN=snrp-40.1 PE=1 S # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.0 0.0 3.3e-06 0.00049 3 38 .] 30 66 .. 28 66 .. 0.86 2 ! 28.7 0.6 1.2e-08 1.8e-06 3 38 .] 73 109 .. 71 109 .. 0.90 3 ! 19.6 0.2 8.8e-06 0.0013 1 38 [] 113 152 .. 113 152 .. 0.85 4 ! 13.9 0.0 0.00056 0.084 14 38 .] 169 193 .. 156 193 .. 0.88 5 ! 31.8 0.1 1.3e-09 1.9e-07 4 38 .] 200 235 .. 198 235 .. 0.93 6 ! 17.0 0.1 5.8e-05 0.0087 4 37 .. 246 284 .. 243 285 .. 0.87 7 ! 17.9 0.0 3e-05 0.0046 3 35 .. 291 324 .. 289 325 .. 0.85 Alignments for each domain: == domain 1 score: 21.0 bits; conditional E-value: 3.3e-06 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++ +l GH + ++ afspdg+ la++++D+++ +W+ tr|Q19211|Q19211_CAEEL 30 PTMVLLGHeGEIYTGAFSPDGTCLATSGYDQKIFFWN 66 567788**777*6666*********9999*******8 PP == domain 2 score: 28.7 bits; conditional E-value: 1.2e-08 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 + t++GH + v +l+f d++ l+s++ D++vr+Wd tr|Q19211|Q19211_CAEEL 73 NFSTIKGHsGAVMDLKFTTDSSSLVSCGTDKSVRVWD 109 67899***555**************9999*******9 PP == domain 3 score: 19.6 bits; conditional E-value: 8.8e-06 TEEEEEEESS.SSEEEEEEETTSSEEE.EEETTSEEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgawla.sGsdDgtvriWd 38 g+c r +++H ++v+++ s+ g l+ s+sdDgt+r+ d tr|Q19211|Q19211_CAEEL 113 GTCARRFRTHtDFVNAVHPSRRGVTLVaSASDDGTCRVHD 152 578999****777****99999999863669******966 PP == domain 4 score: 13.9 bits; conditional E-value: 0.00056 EEEEEETTSSEEEEEETTSEEEEEE CS WD40 14 tslafspdgawlasGsdDgtvriWd 38 t++ f+++++ ++sG+ D+ +++Wd tr|Q19211|Q19211_CAEEL 169 TAVTFNDSSDQVISGGIDNVLKVWD 193 7999********************9 PP == domain 5 score: 31.8 bits; conditional E-value: 1.3e-09 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++tltGH + +t+++ sp+g++++s s+D+tvr Wd tr|Q19211|Q19211_CAEEL 200 TYTLTGHrDTITGISLSPSGKFIISNSMDCTVRQWD 235 6799***888*************98899*******9 PP == domain 6 score: 17.0 bits; conditional E-value: 5.8e-05 EEEEESSSS.....EEEEEEETTSSEEEEEETTSEEEEE CS WD40 4 lrtltGHss.....vtslafspdgawlasGsdDgtvriW 37 ++++ GH++ +++sp +++++Gs D+ +++W tr|Q19211|Q19211_CAEEL 246 VGVFAGHNHnfeknLLKCSWSPCERFITAGSSDRFLYVW 284 788999*556699988**************99******* PP == domain 7 score: 17.9 bits; conditional E-value: 3e-05 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvr 35 +++l GH +sv++ +f+p + ++s++ D+ v tr|Q19211|Q19211_CAEEL 291 IVYKLPGHmGSVNCTDFHPKEPIMLSCGSDKRVF 324 578899*****************98776599885 PP >> sp|Q11176|WDR1_CAEEL Actin-interacting protein 1 OS=Caenorhabditis elegans OX=6239 GN=unc-78 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 13.7 0.2 0.00064 0.096 6 38 .] 54 87 .. 49 87 .. 0.89 2 ! 10.9 0.0 0.0051 0.77 6 37 .. 142 175 .. 137 176 .. 0.81 3 ! 23.3 0.0 6.2e-07 9.3e-05 5 38 .] 184 218 .. 180 218 .. 0.88 4 ! 29.6 0.4 6.2e-09 9.3e-07 9 38 .] 237 267 .. 229 267 .. 0.90 5 ! 15.4 0.2 0.0002 0.03 8 38 .] 321 352 .. 314 352 .. 0.91 6 ? 3.8 0.2 0.88 1.3e+02 9 36 .. 365 392 .. 358 393 .. 0.83 7 ? 1.2 0.0 5.7 8.6e+02 15 37 .. 416 437 .. 408 438 .. 0.84 8 ! 10.2 0.0 0.0083 1.2 14 37 .. 452 475 .. 439 476 .. 0.92 9 ! 11.2 0.0 0.0039 0.59 9 31 .. 489 510 .. 482 515 .. 0.79 10 ! 23.7 0.9 4.5e-07 6.8e-05 6 38 .] 531 564 .. 525 564 .. 0.86 11 ! 13.5 0.2 0.00077 0.12 8 38 .] 577 608 .. 571 608 .. 0.78 Alignments for each domain: == domain 1 score: 13.7 bits; conditional E-value: 0.00064 EEESSSSEEEEE.EETTSSEEEEEETTSEEEEEE CS WD40 6 tltGHssvtsla.fspdgawlasGsdDgtvriWd 38 ++t Hs+ t +a +sp+g + asG+ g+vriWd sp|Q11176|WDR1_CAEEL 54 IYTEHSHQTTVAkTSPSGYYCASGDVHGNVRIWD 87 6888977788888***********9********9 PP == domain 2 score: 10.9 bits; conditional E-value: 0.0051 EEESS.SSEEEEEEETTSSE.EEEEETTSEEEEE CS WD40 6 tltGH.ssvtslafspdgaw.lasGsdDgtvriW 37 ltG+ +s++f p+ ++ ++sGsdD+tv i+ sp|Q11176|WDR1_CAEEL 142 NLTGQaRAMNSVDFKPSRPFrIISGSDDNTVAIF 175 56777444799*********989*******9876 PP == domain 3 score: 23.3 bits; conditional E-value: 6.2e-07 EEEESS.SSEEEEEEETTSSEEE.EEETTSEEEEEE CS WD40 5 rtltGH.ssvtslafspdgawla.sGsdDgtvriWd 38 t+ H ++v+s++++pdg+++a +G+ Dgt+ +++ sp|Q11176|WDR1_CAEEL 184 STFGEHtKFVHSVRYNPDGSLFAsTGG-DGTIVLYN 218 68999*999*************94677.*****997 PP == domain 4 score: 29.6 bits; conditional E-value: 6.2e-09 SS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 9 GH.ssvtslafspdgawlasGsdDgtvriWd 38 +H +sv +l +spdg+ +as+s D+t++iW+ sp|Q11176|WDR1_CAEEL 237 AHsGSVFGLTWSPDGTKIASASADKTIKIWN 267 89777*************************8 PP == domain 5 score: 15.4 bits; conditional E-value: 0.0002 ESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 8 tGH.ssvtslafspdgawlasGsdDgtvriWd 38 GH + +t+l+ s dg+ l+s++ g++ Wd sp|Q11176|WDR1_CAEEL 321 YGHnKAITALSSSADGKTLFSADAEGHINSWD 352 39*888****************99*******9 PP == domain 6 score: 3.8 bits; conditional E-value: 0.88 SSSS.EEEEEEETTSSEEEEEETTSEEEE CS WD40 9 GHss.vtslafspdgawlasGsdDgtvri 36 H +t++++ + g+++ + s+D ++++ sp|Q11176|WDR1_CAEEL 365 VHATmITGIKTTSKGDLF-TVSWDDHLKV 392 573359***********8.68*****997 PP == domain 7 score: 1.2 bits; conditional E-value: 5.7 EEEEETTSSEEEEEETTSEEEEE CS WD40 15 slafspdgawlasGsdDgtvriW 37 +la+s dg+ ++++ +++ i+ sp|Q11176|WDR1_CAEEL 416 GLAVSADGDIAVAAC-YKHIAIY 437 6899******99889.8888776 PP == domain 8 score: 10.2 bits; conditional E-value: 0.0083 EEEEEETTSSEEEEEETTSEEEEE CS WD40 14 tslafspdgawlasGsdDgtvriW 37 +++a s d++++a G+ D +v+++ sp|Q11176|WDR1_CAEEL 452 SCVALSNDKQFVAVGGQDSKVHVY 475 499*******************98 PP == domain 9 score: 11.2 bits; conditional E-value: 0.0039 SS.SSEEEEEEETTSSEEEEEETT CS WD40 9 GH.ssvtslafspdgawlasGsdD 31 H +ts+afs +ga+l++ + D sp|Q11176|WDR1_CAEEL 489 VHpAEITSVAFSNNGAFLVA-T-D 510 58667*************95.4.4 PP == domain 10 score: 23.7 bits; conditional E-value: 4.5e-07 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 6 tltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++t H v ++++spd+ la+Gs D++v +W+ sp|Q11176|WDR1_CAEEL 531 SWTFHtAKVACVSWSPDNVRLATGSLDNSVIVWN 564 56678555*************************8 PP == domain 11 score: 13.5 bits; conditional E-value: 0.00077 ESS..SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 8 tGH..ssvtslafspdgawlasGsdDgtvriWd 38 +H ssv+s+ + + + +s++ D ++++W+ sp|Q11176|WDR1_CAEEL 577 GAHamSSVNSVIWLNETTI-VSAGQDSNIKFWN 608 4799899****66666666.57888*******8 PP >> tr|O02097|O02097_CAEEL Small Nuclear RibonucleoProtein homolog OS=Caenorhabditis elegans OX=6239 GN=snrp-40.2 PE=1 S # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.8 0.0 2e-07 3e-05 3 38 .] 28 64 .. 26 64 .. 0.88 2 ! 30.0 0.0 4.7e-09 7.1e-07 3 38 .] 71 107 .. 69 107 .. 0.89 3 ! 21.7 0.3 2e-06 0.0003 1 38 [] 111 150 .. 111 150 .. 0.84 4 ! 11.2 0.1 0.004 0.6 14 38 .] 167 191 .. 160 191 .. 0.91 5 ! 25.3 0.5 1.5e-07 2.2e-05 5 38 .] 199 233 .. 195 233 .. 0.92 6 ! 14.1 0.0 0.00049 0.073 16 38 .] 261 283 .. 243 283 .. 0.84 7 ! 20.8 0.0 3.7e-06 0.00055 2 35 .. 288 322 .. 287 323 .. 0.88 Alignments for each domain: == domain 1 score: 24.8 bits; conditional E-value: 2e-07 EEEEEESS.SSE.EEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssv.tslafspdgawlasGsdDgtvriWd 38 ++ +l GH + + ts+ fs+dg++las+++D+ + +W+ tr|O02097|O02097_CAEEL 28 PTMVLQGHgGEIyTSQ-FSSDGSFLASAGYDQQIFLWN 64 67899***666*7777.*********9999*******8 PP == domain 2 score: 30.0 bits; conditional E-value: 4.7e-09 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 + +l+GH + + ++f+ d++ l+s++ D+tvr+Wd tr|O02097|O02097_CAEEL 71 NFAVLKGHkGAIMEVKFNADSSHLVSAGTDKTVRVWD 107 67899***655**************9888*******9 PP == domain 3 score: 21.7 bits; conditional E-value: 2e-06 TEEEEEEESSSS.EEEEEEETTSSEEE.EEETTSEEEEEE CS WD40 1 gqclrtltGHss.vtslafspdgawla.sGsdDgtvriWd 38 g+c+r ++ H++ v+s+++++ g+ ++ s+sdDgtv++ d tr|O02097|O02097_CAEEL 111 GSCIRNFKSHTDiVNSVDVNRRGPQMIcSASDDGTVMVHD 150 68********7757****9999999762569*****9965 PP == domain 4 score: 11.2 bits; conditional E-value: 0.004 EEEEEETTSSEEEEEETTSEEEEEE CS WD40 14 tslafspdgawlasGsdDgtvriWd 38 t++ f++ + +++G+ D+ +++Wd tr|O02097|O02097_CAEEL 167 TAVTFNDAADNVICGGIDNQIKVWD 191 678899999999************9 PP == domain 5 score: 25.3 bits; conditional E-value: 1.5e-07 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++l+GH + +tsl++s++g++l+s s+D++++ Wd tr|O02097|O02097_CAEEL 199 YVLSGHrDTITSLSVSHNGNFLLSNSMDCSLMSWD 233 689***888**************8899*******9 PP == domain 6 score: 14.1 bits; conditional E-value: 0.00049 EEEETTSSEEEEEETTSEEEEEE CS WD40 16 lafspdgawlasGsdDgtvriWd 38 + +sp +++++Gs D+ v++W+ tr|O02097|O02097_CAEEL 261 CGWSPRDNYITAGSADRFVYVWN 283 45********************8 PP == domain 7 score: 20.8 bits; conditional E-value: 3.7e-06 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvr 35 c+++l GH +sv++ a +p ++ l+s++ D+t+ tr|O02097|O02097_CAEEL 288 ACVYKLPGHlGSVNCTALHPTQQILLSAGSDKTIF 322 699*********************986655***96 PP >> sp|P17343|GBB1_CAEEL Guanine nucleotide-binding protein subunit beta-1 OS=Caenorhabditis elegans OX=6239 GN=gpb-1 PE # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.1 0.0 7.2e-07 0.00011 4 38 .] 48 83 .. 45 83 .. 0.94 2 ! 11.4 0.1 0.0034 0.52 12 37 .. 99 124 .. 86 125 .. 0.85 3 ! 18.8 0.1 1.6e-05 0.0024 4 38 .] 136 170 .. 133 170 .. 0.90 4 ! 20.3 0.1 5.5e-06 0.00082 3 38 .] 176 212 .. 174 212 .. 0.89 5 ! 32.8 0.0 6e-10 9e-08 2 38 .] 217 254 .. 216 254 .. 0.95 6 ! 22.7 0.1 9.3e-07 0.00014 9 38 .] 265 298 .. 259 298 .. 0.83 7 ! 18.5 0.2 2e-05 0.003 6 38 .] 307 340 .] 303 340 .] 0.92 Alignments for each domain: == domain 1 score: 23.1 bits; conditional E-value: 7.2e-07 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 rtl+GH ++++ + +d++ l+s+s Dg++ +Wd sp|P17343|GBB1_CAEEL 48 RRTLRGHlAKIYAMHWASDSRNLVSASQDGKLIVWD 83 689****999*************************9 PP == domain 2 score: 11.4 bits; conditional E-value: 0.0034 SEEEEEEETTSSEEEEEETTSEEEEE CS WD40 12 svtslafspdgawlasGsdDgtvriW 37 +v +a+ p+g+++a+G+ D+ + i+ sp|P17343|GBB1_CAEEL 99 WVMTCAYAPSGSFVACGGLDNICSIY 124 488889*****************998 PP == domain 3 score: 18.8 bits; conditional E-value: 1.6e-05 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 r+l GH + ++++f +d++ ++s++ D t+ +Wd sp|P17343|GBB1_CAEEL 136 SRELPGHtGYLSCCRFLDDNQIVTSSG-DMTCALWD 170 57899**666*************9989.*******9 PP == domain 4 score: 20.3 bits; conditional E-value: 5.5e-06 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 + + +tGH ++v sl+ spd + ++sG D + ++Wd sp|P17343|GBB1_CAEEL 176 QCTAFTGHtGDVMSLSLSPDFRTFISGACDASAKLWD 212 45569***888****************77*******9 PP == domain 5 score: 32.8 bits; conditional E-value: 6e-10 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 c +t+ GH s+++++af p+g+ +a+GsdD t+r++d sp|P17343|GBB1_CAEEL 217 MCKQTFPGHeSDINAVAFFPSGNAFATGSDDATCRLFD 254 5899*****999************************98 PP == domain 6 score: 22.7 bits; conditional E-value: 9.3e-07 SS.SS...EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 9 GH.ss...vtslafspdgawlasGsdDgtvriWd 38 H + +ts+afs++g++l++G dD ++ +Wd sp|P17343|GBB1_CAEEL 265 SHdNIicgITSVAFSKSGRLLFAGYDDFNCNVWD 298 474336669************************9 PP == domain 7 score: 18.5 bits; conditional E-value: 2e-05 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 6 tltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +l GH + v++l + dg +++Gs+D ++iW+ sp|P17343|GBB1_CAEEL 307 VLAGHdNRVSCLGVTEDGMAVCTGSWDSFLKIWN 340 688**888****99999999*************8 PP >> tr|Q93339|Q93339_CAEEL Yeast PRP (Splicing factor) related OS=Caenorhabditis elegans OX=6239 GN=prp-4 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.2 0.1 0.037 5.6 17 38 .] 205 232 .. 182 232 .. 0.75 2 ! 12.6 0.1 0.0014 0.22 7 38 .] 242 282 .. 234 282 .. 0.64 3 ! 19.3 0.0 1.1e-05 0.0017 2 38 .] 287 324 .. 286 324 .. 0.92 4 ! 22.5 0.1 1.1e-06 0.00017 8 38 .] 335 366 .. 328 366 .. 0.92 5 ! 25.8 0.0 9.9e-08 1.5e-05 1 38 [] 370 408 .. 370 408 .. 0.95 6 ! 19.0 0.0 1.4e-05 0.0021 3 38 .] 414 450 .. 412 450 .. 0.89 7 ! 33.7 0.2 3.2e-10 4.8e-08 1 37 [. 454 491 .. 454 491 .. 0.93 Alignments for each domain: == domain 1 score: 8.2 bits; conditional E-value: 0.037 E......EETTSSEEEEEETTSEEEEEE CS WD40 17 a......fspdgawlasGsdDgtvriWd 38 + fs d+ ++++++ g+v +W+ tr|Q93339|Q93339_CAEEL 205 RpvafceFSADSEHIVTAGWSGSVAVWK 232 0444446********************6 PP == domain 2 score: 12.6 bits; conditional E-value: 0.0014 EESSSS.EEEEEEETTSSE........EEEEETTSEEEEEE CS WD40 7 ltGHss.vtslafspdgaw........lasGsdDgtvriWd 38 + GHss + +f+p ++s+s+Dgtv +W+ tr|Q93339|Q93339_CAEEL 242 FIGHSSqAGCARFHPGAFTqndysslnVVSCSYDGTVLLWS 282 668844254444444433355556667899**********5 PP == domain 3 score: 19.3 bits; conditional E-value: 1.1e-05 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +++++l+ H + v+ +af+p+g+ la+++ D t r++d tr|Q93339|Q93339_CAEEL 287 SPIGELEQHpQRVSKVAFHPNGHHLATACFDSTWRMYD 324 688999***888**************9988*****998 PP == domain 4 score: 22.5 bits; conditional E-value: 1.1e-06 ESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 8 tGH.ssvtslafspdgawlasGsdDgtvriWd 38 +GH +sv ++af+pdg+ ++G+ D+ r+Wd tr|Q93339|Q93339_CAEEL 335 EGHsKSVADVAFHPDGSVALTGGHDCYGRVWD 366 5**999************99**99*******9 PP == domain 5 score: 25.8 bits; conditional E-value: 9.9e-08 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 g+c+ l+GH + ++s+ + p+g +++Gs D++ ++Wd tr|Q93339|Q93339_CAEEL 370 GRCIMFLDGHtKEIHSVEWMPNGYEMITGSSDNSMKVWD 408 68999*****999****************99*******9 PP == domain 6 score: 19.0 bits; conditional E-value: 1.4e-05 EEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 +++t +H+s vt ++ + g++l+s+s D+t+++W+ tr|Q93339|Q93339_CAEEL 414 NTYTMPAHTSvVTRVRADAAGQYLVSASFDCTLKMWS 450 678889**7757***************99*******5 PP == domain 7 score: 33.7 bits; conditional E-value: 3.2e-10 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 +q+lr l GH + + +++ spdg+w++s+ D+t ++W tr|Q93339|Q93339_CAEEL 454 WQPLRQLQGHdTRILCVDISPDGQWMCSSAFDRTFKLW 491 799*******777************998877******* PP >> tr|U4PCM1|U4PCM1_CAEEL Polyadenylation Factor Subunit homolog OS=Caenorhabditis elegans OX=6239 GN=pfs-2 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 10.5 0.0 0.0069 1 12 38 .] 146 172 .. 136 172 .. 0.87 2 ! 14.8 0.0 0.0003 0.045 5 37 .. 180 213 .. 176 214 .. 0.90 3 ! 24.1 0.0 3.5e-07 5.2e-05 3 38 .] 219 256 .. 217 256 .. 0.91 4 ! 20.5 0.0 4.6e-06 0.0007 5 32 .. 264 292 .. 260 300 .. 0.86 5 ! 30.1 0.0 4.3e-09 6.4e-07 1 38 [] 304 342 .. 304 342 .. 0.96 6 ! 15.1 0.0 0.00024 0.036 2 37 .. 347 384 .. 346 385 .. 0.83 7 ! 17.0 0.2 6.2e-05 0.0093 9 37 .. 398 427 .. 390 427 .. 0.89 Alignments for each domain: == domain 1 score: 10.5 bits; conditional E-value: 0.0069 SEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 12 svtslafspdgawlasGsdDgtvriWd 38 +v+s+++sp+g+ l++G+ g +W+ tr|U4PCM1|U4PCM1_CAEEL 146 PVYSVCWSPEGKRLITGCQTGEFTLWN 172 59***************9888777776 PP == domain 2 score: 14.8 bits; conditional E-value: 0.0003 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvriW 37 ++l +H s +++l++ ++ +wl+s++ g v+ W tr|U4PCM1|U4PCM1_CAEEL 180 TILQAHdSAIRALKWASNEQWLLSADQGGYVKYW 213 5789**777****************99****999 PP == domain 3 score: 24.1 bits; conditional E-value: 3.5e-07 EEEEEESSSS..EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGHss..vtslafspdgawlasGsdDgtvriWd 38 + + +++H++ +++laf p +a++sdDgt r+Wd tr|U4PCM1|U4PCM1_CAEEL 219 NAHMFSAHKDeaIRGLAFAPTDVKFATASDDGTARVWD 256 6689****6678*************************9 PP == domain 4 score: 20.5 bits; conditional E-value: 4.6e-06 EEEESS.SSEEEEEEETTSSEEEEEETTS CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDg 32 r+l+GH v++++++p + ++a+Gs+D tr|U4PCM1|U4PCM1_CAEEL 264 RVLRGHgAEVRCIDWHPTKGLIATGSRDT 292 89****666*****************975 PP == domain 5 score: 30.1 bits; conditional E-value: 4.3e-09 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 g+cl tl H ssv ++ f+++g+wl++G++D+ v+++d tr|U4PCM1|U4PCM1_CAEEL 304 GSCLATLQEHkSSVMAVEFNKNGNWLLTGGRDHLVKMYD 342 68********888************************98 PP == domain 6 score: 15.1 bits; conditional E-value: 0.00024 EEEEEEESS.SSEEEEEEETTSSEE.EEEETTSEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawl.asGsdDgtvriW 37 + +rt+++H + v sla++p + l +sG+ Dg++ W tr|U4PCM1|U4PCM1_CAEEL 347 KEMRTYRAHkKEVISLAWHPIHEGLfVSGGGDGSIVYW 384 6789*****88888**888888886369977****999 PP == domain 7 score: 17.0 bits; conditional E-value: 6.2e-05 SS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 9 GH.ssvtslafspdgawlasGsdDgtvriW 37 +H + ++s++++p g+ la+Gs D++ ++W tr|U4PCM1|U4PCM1_CAEEL 398 AHdQAIWSMKWHPLGHILATGSNDNNTKFW 427 78666************************9 PP >> tr|Q9N4H7|Q9N4H7_CAEEL Coatomer subunit alpha OS=Caenorhabditis elegans OX=6239 GN=copa-1 PE=1 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.9 0.1 0.01 1.6 13 38 .] 14 39 .. 2 39 .. 0.84 2 ! 26.6 0.1 5.6e-08 8.4e-06 5 38 .] 47 81 .. 43 81 .. 0.91 3 ! 26.4 0.4 6.5e-08 9.8e-06 2 38 .] 86 123 .. 85 123 .. 0.90 4 ! 29.5 0.0 6.6e-09 1e-06 3 38 .] 129 165 .. 127 165 .. 0.93 5 ! 27.8 0.6 2.4e-08 3.5e-06 5 37 .. 201 234 .. 198 235 .. 0.92 6 ! 28.1 0.3 1.9e-08 2.8e-06 4 38 .] 244 279 .. 241 279 .. 0.93 7 ? 1.4 0.0 5 7.5e+02 4 34 .. 286 317 .. 283 319 .. 0.68 Alignments for each domain: == domain 1 score: 9.9 bits; conditional E-value: 0.01 EEEEEEETTSSEEEEE.ETTSEEEEEE CS WD40 13 vtslafspdgawlasG.sdDgtvriWd 38 v +++f+p +w++++ + g + +Wd tr|Q9N4H7|Q9N4H7_CAEEL 14 VKGISFHPTRPWVLTSlH-SGVIQLWD 39 899*************66.*******9 PP == domain 2 score: 26.6 bits; conditional E-value: 5.6e-08 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +++ H ++v++++f++d++ ++sG+dD ++++W+ tr|Q9N4H7|Q9N4H7_CAEEL 47 EKFDEHdGPVRGICFHHDQPIFVSGGDDYKIKVWN 81 56889*888*************************8 PP == domain 3 score: 26.4 bits; conditional E-value: 6.5e-08 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +c+ tl GH + ++ f++ +w++s+sdD+tvriW+ tr|Q9N4H7|Q9N4H7_CAEEL 86 RCIFTLLGHlDYIRTTFFHHKYPWIISASDDQTVRIWN 123 6999*****999*5555********************8 PP == domain 4 score: 29.5 bits; conditional E-value: 6.6e-09 EEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 + +ltGH++ v + +f+p +++as+s D+tvr+Wd tr|Q9N4H7|Q9N4H7_CAEEL 129 SIAILTGHNHyVMCAQFHPTEDLVASASLDQTVRVWD 165 6789****888*************************9 PP == domain 5 score: 27.8 bits; conditional E-value: 2.4e-08 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvriW 37 ++l+GH +v+ +af++ ++ l+sGsdD+ v+iW tr|Q9N4H7|Q9N4H7_CAEEL 201 HVLEGHdRGVNWVAFHHTNPILVSGSDDRQVKIW 234 899***666************************* PP == domain 6 score: 28.1 bits; conditional E-value: 1.9e-08 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 l +++GH ++v+s+ f+p+ ++++s s+D+++r+Wd tr|Q9N4H7|Q9N4H7_CAEEL 244 LDSCRGHyNNVSSVIFHPNADLILSNSEDKSIRVWD 279 6789********************88*********9 PP == domain 7 score: 1.4 bits; conditional E-value: 5 EEEEESS.SS...EEEEEEETTSSEEEEEETTSEE CS WD40 4 lrtltGH.ss...vtslafspdgawlasGsdDgtv 34 l++++ H + v la +p+ +++a+G+d+g v tr|Q9N4H7|Q9N4H7_CAEEL 286 LHVFR-HeNErfwV--LAAHPSLNMFAAGHDNGMV 317 66666.65445334..4459999*******88776 PP >> sp|Q20636|GBB2_CAEEL Guanine nucleotide-binding protein subunit beta-2 OS=Caenorhabditis elegans OX=6239 GN=gpb-2 PE # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.8 0.5 4.7e-08 7.1e-06 4 38 .] 61 96 .. 58 96 .. 0.93 2 ! 12.3 0.0 0.0019 0.28 12 35 .. 112 135 .. 99 136 .. 0.82 3 ! 15.2 0.2 0.00022 0.032 7 38 .] 152 184 .. 146 184 .. 0.85 4 ! 15.0 0.5 0.00026 0.039 1 38 [] 188 228 .. 188 228 .. 0.84 5 ! 35.4 0.0 9.1e-11 1.4e-08 1 38 [] 232 270 .. 232 270 .. 0.97 6 ! 10.6 0.0 0.0061 0.92 12 38 .] 288 314 .. 276 314 .. 0.89 7 ! 31.9 0.6 1.2e-09 1.8e-07 6 37 .. 323 355 .. 316 355 .. 0.90 Alignments for each domain: == domain 1 score: 26.8 bits; conditional E-value: 4.7e-08 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 r+l+GH + v ++++s d++ ++s+s Dg+v +Wd sp|Q20636|GBB2_CAEEL 61 RRILKGHvGKVLCMDWSLDKRHIVSSSQDGKVIVWD 96 689****888*************************9 PP == domain 2 score: 12.3 bits; conditional E-value: 0.0019 SEEEEEEETTSSEEEEEETTSEEE CS WD40 12 svtslafspdgawlasGsdDgtvr 35 +v ++afsp+++++a+G+ D+++ sp|Q20636|GBB2_CAEEL 112 WVMACAFSPSSQMIACGGLDNKCS 135 5999**************999885 PP == domain 3 score: 15.2 bits; conditional E-value: 0.00022 EESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 7 ltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +H s +++ f ++ +++++Gs D t+ iWd sp|Q20636|GBB2_CAEEL 152 VATHtSYMSCCTFLRSDNLILTGSGDSTCAIWD 184 557866689**************99*******9 PP == domain 4 score: 15.0 bits; conditional E-value: 0.00026 TEEEEEEESS.SSEEEEE...EETTSSEEEEEETTSEEEEEE CS WD40 1 gqclrtltGH.ssvtsla...fspdgawlasGsdDgtvriWd 38 gq+++ + GH ++v +++ + ++++++G D++ +Wd sp|Q20636|GBB2_CAEEL 188 GQLIQNFHGHtGDVFAIDvpkCDTGNTFISAGA-DKHSLVWD 228 688999****888**999997777777776666.*******9 PP == domain 5 score: 35.4 bits; conditional E-value: 9.1e-11 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 gqc+++++GH +++ ++f+p+g+ +a+GsdD t+r++d sp|Q20636|GBB2_CAEEL 232 GQCVQSFEGHeADINTVRFHPNGDAFATGSDDATCRLFD 270 79********999************************98 PP == domain 6 score: 10.6 bits; conditional E-value: 0.0061 SEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 12 svtslafspdgawlasGsdDgtvriWd 38 +v++++fs +g+ l++G D v +Wd sp|Q20636|GBB2_CAEEL 288 PVNGVDFSLSGRILFAGYGDYRVGVWD 314 59***************55*******9 PP == domain 7 score: 31.9 bits; conditional E-value: 1.2e-09 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 6 tltGH.ssvtslafspdgawlasGsdDgtvriW 37 +l GH + +++l++spdg+ ++s+s+D+t+riW sp|Q20636|GBB2_CAEEL 323 VLYGHeNRISCLRTSPDGTAVCSASWDCTIRIW 355 378**999************************* PP >> tr|O17939|O17939_CAEEL AIP1 (Actin Interacting Protein 1) Like OS=Caenorhabditis elegans OX=6239 GN=aipl-1 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 12.9 0.1 0.0012 0.18 7 38 .] 55 87 .. 50 87 .. 0.78 2 ? 0.9 0.0 7.1 1.1e+03 7 28 .. 102 121 .. 90 127 .. 0.70 3 ! 11.1 0.0 0.0045 0.67 5 37 .. 141 175 .. 137 176 .. 0.85 4 ! 17.8 0.1 3.4e-05 0.005 3 38 .] 182 218 .. 180 218 .. 0.88 5 ! 28.8 0.1 1.2e-08 1.7e-06 9 38 .] 235 265 .. 222 265 .. 0.88 6 ! 12.7 0.0 0.0013 0.2 8 37 .. 319 349 .. 312 350 .. 0.84 7 ? 4.4 0.1 0.58 87 10 36 .. 362 388 .. 353 390 .. 0.82 8 ? 8.9 0.0 0.022 3.2 14 37 .. 440 463 .. 428 464 .. 0.90 9 ? 8.8 0.0 0.023 3.5 9 27 .. 478 497 .. 471 515 .. 0.81 10 ! 23.6 1.0 5.1e-07 7.6e-05 7 38 .] 521 553 .. 516 553 .. 0.91 11 ! 10.4 0.1 0.0072 1.1 8 38 .] 566 597 .. 559 597 .. 0.74 Alignments for each domain: == domain 1 score: 12.9 bits; conditional E-value: 0.0012 EESSSSEEEEE.EETTSSEEEEEETTSEEEEEE CS WD40 7 ltGHssvtsla.fspdgawlasGsdDgtvriWd 38 +t H + t +a sp g + asG+ g++riWd tr|O17939|O17939_CAEEL 55 YTEHAHQTTVAkISPTGFYCASGDTQGNIRIWD 87 6656443444456**********89*******9 PP == domain 2 score: 0.9 bits; conditional E-value: 7.1 EESSSSEEEEEEETTSSEEEEE CS WD40 7 ltGHssvtslafspdgawlasG 28 ++G +v ++a++++++ +a+ tr|O17939|O17939_CAEEL 102 FSG--PVKDIAWDSESKRIAAV 121 333..39*********999864 PP == domain 3 score: 11.1 bits; conditional E-value: 0.0045 EEEESSSS.EEEEEEETTSSE.EEEEETTSEEEEE CS WD40 5 rtltGHss.vtslafspdgaw.lasGsdDgtvriW 37 ++ltG+s +s++f p ++ ++sGsdD+tv i+ tr|O17939|O17939_CAEEL 141 GSLTGQSRtMNSVDFKPTRPFrIISGSDDNTVAIF 175 57889944589**********989*******9876 PP == domain 4 score: 17.8 bits; conditional E-value: 3.4e-05 EEEEEESS.SSEEEEEEETTSSEEE.EEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawla.sGsdDgtvriWd 38 +t++ H ++v s +++ dg+++a +Gs Dgtv +++ tr|O17939|O17939_CAEEL 182 FKHTFDHHkKFVQSTRYNNDGSLFAsTGS-DGTVVLYN 218 5799**99999*************94677.*****997 PP == domain 5 score: 28.8 bits; conditional E-value: 1.2e-08 SS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 9 GH.ssvtslafspdgawlasGsdDgtvriWd 38 +H +s+ +la+spd++ +a++s D++v+iWd tr|O17939|O17939_CAEEL 235 AHtGSIFALAWSPDQSRIATASADKSVKIWD 265 89888*************************9 PP == domain 6 score: 12.7 bits; conditional E-value: 0.0013 ESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 8 tGH.ssvtslafspdgawlasGsdDgtvriW 37 GH + +t+l+ s+dg++l+s++ g++ W tr|O17939|O17939_CAEEL 319 QGHnKAITALSKSSDGKFLFSADAEGHITTW 349 5**888**************99889998655 PP == domain 7 score: 4.4 bits; conditional E-value: 0.58 SSS.EEEEEEETTSSEEEEEETTSEEEE CS WD40 10 Hss.vtslafspdgawlasGsdDgtvri 36 H+ +t+ ++s++g+++ + ++D ++i tr|O17939|O17939_CAEEL 362 HTTmITGAQTSSNGDLF-TVGWDDQLKI 388 633699**********8.689**99998 PP == domain 8 score: 8.9 bits; conditional E-value: 0.022 EEEEEETTSSEEEEEETTSEEEEE CS WD40 14 tslafspdgawlasGsdDgtvriW 37 t++af+ +++++a G++D +v+++ tr|O17939|O17939_CAEEL 440 TCVAFCAEKSLVAVGGKDAKVHVY 463 8********************998 PP == domain 9 score: 8.8 bits; conditional E-value: 0.023 SS.SSEEEEEEETTSSEEEE CS WD40 9 GH.ssvtslafspdgawlas 27 H +t+++fs+dg +la tr|O17939|O17939_CAEEL 478 EHsAEITAVSFSDDGEYLAV 497 59445************974 PP == domain 10 score: 23.6 bits; conditional E-value: 5.1e-07 EESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 7 ltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +t H s v +a+spd++ la+Gs D +v iWd tr|O17939|O17939_CAEEL 521 WTFHtSKVLTVAWSPDNQRLATGSIDTSVIIWD 553 6789666*************************9 PP == domain 11 score: 10.4 bits; conditional E-value: 0.0072 ESS..SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 8 tGH..ssvtslafspdgawlasGsdDgtvriWd 38 +H ssv+ +++ ++ + +s++ D ++++W+ tr|O17939|O17939_CAEEL 566 GAHpmSSVNVVRWLDETTV-VSAGQDSNIKFWN 597 5788888999956666555.57888*******8 PP >> tr|G5EEL2|G5EEL2_CAEEL PLeiotropic ReGulator (Vertebrate) homolog OS=Caenorhabditis elegans OX=6239 GN=plrg-1 PE=1 S # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 31.2 0.5 1.9e-09 2.9e-07 5 38 .] 178 212 .. 174 212 .. 0.89 2 ! 31.0 0.0 2.2e-09 3.3e-07 2 38 .] 217 254 .. 216 254 .. 0.95 3 ! 27.0 0.3 4e-08 6.1e-06 2 38 .] 259 296 .. 258 296 .. 0.95 4 ! 18.4 0.3 2.2e-05 0.0033 3 38 .] 302 338 .. 300 338 .. 0.77 5 ? 8.4 0.0 0.032 4.8 3 37 .. 344 378 .. 342 379 .. 0.87 6 ! 18.6 0.2 1.8e-05 0.0027 2 38 .] 384 420 .. 383 420 .. 0.86 7 ? 3.9 0.0 0.8 1.2e+02 13 37 .. 445 469 .. 431 470 .. 0.82 Alignments for each domain: == domain 1 score: 31.2 bits; conditional E-value: 1.9e-09 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 r+ +GH ++v+++++ p ++w+asG+ D+ ++iWd tr|G5EEL2|G5EEL2_CAEEL 178 RVASGHtGWVRAVDVEPGNQWFASGGADRIIKIWD 212 5568**888*************************9 PP == domain 2 score: 31.0 bits; conditional E-value: 2.2e-09 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 q+ +ltGH ssv+++++sp +++l+sG++D+ v+ Wd tr|G5EEL2|G5EEL2_CAEEL 217 QLKLSLTGHiSSVRAVKVSPRHPFLFSGGEDKQVKCWD 254 677899*******************************9 PP == domain 3 score: 27.0 bits; conditional E-value: 4e-08 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 + +r++ GH s v +l+++p+ + l+++ +D t r+Wd tr|G5EEL2|G5EEL2_CAEEL 259 KVIRHYHGHlSAVQALSVHPSLDVLVTCARDSTARVWD 296 5689*******9*************************9 PP == domain 4 score: 18.4 bits; conditional E-value: 2.2e-05 EEEEEESS.SS...EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ss...vtslafspdgawlasGsdDgtvriWd 38 +++ + GH + v ++ s d + +++++ D tvr+Wd tr|G5EEL2|G5EEL2_CAEEL 302 QVHCFAGHtNTvadVVCQ--SVDPQVITASH-DATVRLWD 338 58999***8776666677..77777776556.*******9 PP == domain 5 score: 8.4 bits; conditional E-value: 0.032 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 + tlt H +sv++l +p +++as+s +++ W tr|G5EEL2|G5EEL2_CAEEL 344 SMCTLTHHkKSVRALTIHPRLNMFASAS-PDNIKQW 378 56799999999***************99.8888888 PP == domain 6 score: 18.6 bits; conditional E-value: 1.8e-05 EEEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 + ++ l+GH+ ++ l+ ++dg + sG d+g++ +Wd tr|G5EEL2|G5EEL2_CAEEL 384 EFMQNLSGHNAiINTLSSNDDGVVV-SGADNGSLCFWD 420 567889***7757***999999996.8*9********9 PP == domain 7 score: 3.9 bits; conditional E-value: 0.8 EEEEEEETTSSEEEEEETTSEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriW 37 +++ +f++ g l+++ D+t++++ tr|G5EEL2|G5EEL2_CAEEL 445 IYASCFDKTGLRLITAEADKTIKMY 469 66667999999999**77*****98 PP >> sp|Q20168|COPB2_CAEEL Probable coatomer subunit beta' OS=Caenorhabditis elegans OX=6239 GN=copb-2 PE=3 SV=3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 11.1 0.0 0.0044 0.67 13 38 .] 18 43 .. 9 43 .. 0.90 2 ! 15.3 0.0 0.0002 0.03 12 38 .] 59 85 .. 47 85 .. 0.82 3 ! 18.6 0.0 1.9e-05 0.0029 4 38 .] 92 127 .. 89 127 .. 0.92 4 ! 16.9 0.0 6.2e-05 0.0094 5 37 .. 136 170 .. 132 171 .. 0.87 5 ! 25.7 0.0 1.1e-07 1.7e-05 4 38 .] 178 215 .. 175 215 .. 0.86 6 ! 34.7 0.1 1.6e-10 2.3e-08 2 37 .. 220 256 .. 219 257 .. 0.96 7 ? 3.7 0.0 0.98 1.5e+02 15 32 .. 360 376 .. 349 377 .. 0.87 8 ? 2.9 0.1 1.7 2.6e+02 15 31 .. 470 486 .. 448 490 .. 0.81 Alignments for each domain: == domain 1 score: 11.1 bits; conditional E-value: 0.0044 EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriWd 38 v +++ +p +wl+++ ++g+v+iW+ sp|Q20168|COPB2_CAEEL 18 VKCVDLHPVETWLLAALYNGNVHIWN 43 99************9977*******8 PP == domain 2 score: 15.3 bits; conditional E-value: 0.0002 SEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 12 svtslafspdgawlasGsdDgtvriWd 38 +v++ +f p ++w+++GsdD ++r+++ sp|Q20168|COPB2_CAEEL 59 PVRAAKFVPRKSWVVTGSDDMHIRVFN 85 478888*******************97 PP == domain 3 score: 18.6 bits; conditional E-value: 1.9e-05 EEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 ++ +++Hs+ +sl ++p ++++s+sdD v++Wd sp|Q20168|COPB2_CAEEL 92 VHQFEAHSDyLRSLVVHPTLPYVISSSDDMLVKMWD 127 799****556*************************9 PP == domain 4 score: 16.9 bits; conditional E-value: 6.2e-05 EEEESSSS.EEEEE.EETTSSEEEEEETTSEEEEE CS WD40 5 rtltGHss.vtsla.fspdgawlasGsdDgtvriW 37 ++++GH++ v +a +++d++ +a++s D+tv++W sp|Q20168|COPB2_CAEEL 136 QSFEGHTHyVMQIAiNPKDNNTFATASLDKTVKVW 170 689***66799999888888889************ PP == domain 5 score: 25.7 bits; conditional E-value: 1.1e-07 EEEEESS.SSEEEEE..EETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtsla..fspdgawlasGsdDgtvriWd 38 tl+GH ++v++++ ++++++sG dD+ v+iWd sp|Q20168|COPB2_CAEEL 178 NFTLEGHeKGVNCVDyyHGGEKPYIISGADDHLVKIWD 215 57899*********9776667777*************9 PP == domain 6 score: 34.7 bits; conditional E-value: 1.6e-10 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 +c++tl+GH ++v+s++f+p+ +++++Gs+D tvr+W sp|Q20168|COPB2_CAEEL 220 TCVQTLDGHaQNVSSVCFHPELPLIITGSEDSTVRLW 256 69*******988************************* PP == domain 7 score: 3.7 bits; conditional E-value: 0.98 EEEEETTSSEEEEEETTS CS WD40 15 slafspdgawlasGsdDg 32 la s++g+++++++ Dg sp|Q20168|COPB2_CAEEL 360 TLAHSSNGRFVVACG-DG 376 6889**********9.97 PP == domain 8 score: 2.9 bits; conditional E-value: 1.7 EEEEETTSSEEEEEETT CS WD40 15 slafspdgawlasGsdD 31 s+ +s++g ++a ++dD sp|Q20168|COPB2_CAEEL 470 SIYWSDNGEMVAICGDD 486 566*********99955 PP >> tr|A0A1D3PDA8|A0A1D3PDA8_CAEEL Uncharacterized protein OS=Caenorhabditis elegans OX=6239 GN=CELE_Y41C4A.32 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.1 0.2 0.00024 0.036 7 38 .] 8 40 .. 4 40 .. 0.88 2 ! 12.6 0.0 0.0014 0.21 18 38 .] 62 82 .. 54 82 .. 0.87 3 ! 30.6 0.0 3.1e-09 4.6e-07 3 38 .] 88 124 .. 86 124 .. 0.91 4 ! 14.2 0.0 0.00045 0.067 6 38 .] 134 168 .. 129 168 .. 0.76 5 ! 30.2 0.2 4e-09 6.1e-07 4 38 .] 175 209 .. 172 209 .. 0.91 6 ! 25.0 0.0 1.7e-07 2.6e-05 2 38 .] 214 250 .. 213 250 .. 0.92 Alignments for each domain: == domain 1 score: 15.1 bits; conditional E-value: 0.00024 EESSSS.EEEEEEETTSSEEEEE.ETTSEEEEEE CS WD40 7 ltGHss.vtslafspdgawlasG.sdDgtvriWd 38 + Hs+ v s++f+++++w++++ + g+v iW+ tr|A0A1D3PDA8|A0A1D3PDA8_CAEEL 8 FVSHSDrVKSVDFHSEKPWILTAlH-TGNVQIWN 40 5679556****************66.*******8 PP == domain 2 score: 12.6 bits; conditional E-value: 0.0014 EETTSSEEEEEETTSEEEEEE CS WD40 18 fspdgawlasGsdDgtvriWd 38 f + ++w+a++sdD+ +ri+d tr|A0A1D3PDA8|A0A1D3PDA8_CAEEL 62 FIHRKNWIATASDDQQIRIFD 82 556689*************98 PP == domain 3 score: 30.6 bits; conditional E-value: 3.1e-09 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++ ++t+H ++++sl ++p ++l+s+sdD+++r+Wd tr|A0A1D3PDA8|A0A1D3PDA8_CAEEL 88 LINEFTAHsDFIRSLTVHPTLPYLISASDDRKIRVWD 124 67789***555*************************9 PP == domain 4 score: 14.2 bits; conditional E-value: 0.00045 EEESSSS.EEEEEEETTSSE.EEEEETTSEEEEEE CS WD40 6 tltGHss.vtslafspdgaw.lasGsdDgtvriWd 38 ++ H + + +a++p+ + ++sGs D+t+++W+ tr|A0A1D3PDA8|A0A1D3PDA8_CAEEL 134 EFQEHAHyIMQIAVNPEDPEmFVSGSLDKTLKVWK 168 567774459999977777773579**********6 PP == domain 5 score: 30.2 bits; conditional E-value: 4e-09 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 + tl+GH ++v+++ f g+ + sGsdD+++ +Wd tr|A0A1D3PDA8|A0A1D3PDA8_CAEEL 175 ICTLEGHeKGVNCVEFLTGGRIV-SGSDDCSICVWD 209 6799**********999999996.8**********9 PP == domain 6 score: 25.0 bits; conditional E-value: 1.7e-07 EEEEEEE.SS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtlt.GH.ssvtslafspdgawlasGsdDgtvriWd 38 +c+ tl+ +H ++vt + p ++w++sG +D tv+iW+ tr|A0A1D3PDA8|A0A1D3PDA8_CAEEL 214 KCIETLKnAHkNNVTFV--TPFKTWIISGAEDSTVKIWN 250 788999779*888****..*******************8 PP >> sp|Q09990|LIN23_CAEEL F-box/WD repeat-containing protein lin-23 OS=Caenorhabditis elegans OX=6239 GN=lin-23 PE=1 SV= # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.1 0.1 0.00011 0.017 11 38 .] 223 248 .. 211 248 .. 0.75 2 ! 27.0 0.7 4.2e-08 6.3e-06 2 38 .] 253 288 .. 252 288 .. 0.91 3 ! 14.7 0.2 0.00032 0.049 1 38 [] 292 328 .. 292 328 .. 0.82 4 ! 18.3 0.1 2.4e-05 0.0036 5 38 .] 339 371 .. 336 371 .. 0.84 5 ! 23.4 0.0 5.8e-07 8.8e-05 3 38 .] 377 411 .. 375 411 .. 0.88 6 ! 25.4 0.0 1.4e-07 2e-05 1 38 [] 415 451 .. 415 451 .. 0.84 7 ! 12.5 0.4 0.0016 0.24 3 38 .] 466 500 .. 464 500 .. 0.75 Alignments for each domain: == domain 1 score: 16.1 bits; conditional E-value: 0.00011 SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 11 ssvtslafspdgawlasGsdDgtvriWd 38 ++v++l + d + ++sG +D+t++iWd sp|Q09990|LIN23_CAEEL 223 KGVYCL--QYDDDKIVSGLRDNTIKIWD 248 459999..555555779*99*******9 PP == domain 2 score: 27.0 bits; conditional E-value: 4.2e-08 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +c r+l+GH +sv +l + d++ ++sGs D tvr+Wd sp|Q09990|LIN23_CAEEL 253 SCSRILSGHtGSVLCL--QYDNRVIISGSSDATVRVWD 288 699******888****..7788889***99*******9 PP == domain 3 score: 14.7 bits; conditional E-value: 0.00032 TEEEEEEESS.SSEEEEEEETTSSE....EEEEETTSEEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgaw....lasGsdDgtvriWd 38 g+c++tl H v +l ++ ++++s+D+++ +Wd sp|Q09990|LIN23_CAEEL 292 GECIKTLIHHcEAVLHL------RFangiMVTCSKDRSIAVWD 328 68******996669999......555554579**********9 PP == domain 4 score: 18.3 bits; conditional E-value: 2.4e-05 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 r+l GH v+ + + d ++++s+s D+t+++W+ sp|Q09990|LIN23_CAEEL 339 RVLVGHrAAVNVV--DFDDRYIVSASGDRTIKVWS 371 7899**8888777..679999999877*******5 PP == domain 5 score: 23.4 bits; conditional E-value: 5.8e-07 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +rtl GH ++ +l + g++++sGs D+t+r+Wd sp|Q09990|LIN23_CAEEL 377 FVRTLAGHrRGIACL--QYRGRLVVSGSSDNTIRLWD 411 5899****888****..66777799**99*******9 PP == domain 6 score: 25.4 bits; conditional E-value: 1.4e-07 TEEEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 1 gqclrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 g clr+l+GH v+++ d + ++sG +Dg++++Wd sp|Q09990|LIN23_CAEEL 415 GVCLRVLEGHEElVRCI--RFDEKRIVSGAYDGKIKVWD 451 57********446****..44666699**99*******9 PP == domain 7 score: 12.5 bits; conditional E-value: 0.0016 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 cl +l H + v l+f++ + ++s+s D t+ iWd sp|Q09990|LIN23_CAEEL 466 CLCSLVQHtGRVFRLQFDDFQ--IVSSSHDDTILIWD 500 888999996669999555444..446666*******9 PP >> tr|O44729|O44729_CAEEL Yeast PRP (Splicing factor) related OS=Caenorhabditis elegans OX=6239 GN=prp-17 PE=1 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 29.1 0.1 8.7e-09 1.3e-06 2 37 .. 266 303 .. 265 304 .. 0.91 2 ! 21.5 0.0 2.3e-06 0.00035 3 38 .] 311 347 .. 309 347 .. 0.93 3 ! 10.5 0.0 0.007 1.1 5 38 .] 356 391 .. 352 391 .. 0.84 4 ! 20.9 0.0 3.6e-06 0.00055 2 37 .. 396 432 .. 395 433 .. 0.87 5 ? 2.5 0.0 2.2 3.3e+02 19 37 .. 457 475 .. 446 476 .. 0.85 6 ! 25.4 0.1 1.3e-07 2e-05 5 38 .] 488 524 .. 484 524 .. 0.87 7 ! 13.0 1.0 0.0011 0.17 4 38 .] 531 567 .] 528 567 .] 0.75 Alignments for each domain: == domain 1 score: 29.1 bits; conditional E-value: 8.7e-09 EEEEEEESS.SSEEEEEEETTSSEEE.EEETTSEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawla.sGsdDgtvriW 37 ++++t++GH ++v+ l++ p +a l+ s+s+D ++++W tr|O44729|O44729_CAEEL 266 KLVHTYRGHnKGVNFLQWFPKSAHLFlSCSMDTKIKLW 303 689******999*****9999999845*********** PP == domain 2 score: 21.5 bits; conditional E-value: 2.3e-06 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +rt+ GH +v+ +af+ +g+ ++s+s D+ v++Wd tr|O44729|O44729_CAEEL 311 VVRTYAGHkLPVREVAFNNEGTEFLSASFDRYVKLWD 347 689*****777**************9999*******9 PP == domain 3 score: 10.5 bits; conditional E-value: 0.007 EEEESSSSE.EEEEEETTSSE....EEEEETTSEEEEEE CS WD40 5 rtltGHssv.tslafspdgaw....lasGsdDgtvriWd 38 r tGH v ++l+++pd + l G+ ++++ Wd tr|O44729|O44729_CAEEL 356 RFHTGH--VpYCLKYHPDDDKnhmfL-VGMQNKKIIQWD 391 445699..*9****999999999954.6**********9 PP == domain 4 score: 20.9 bits; conditional E-value: 3.6e-06 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 + +++++ H + v+s+ f + ++ +as sdD++vriW tr|O44729|O44729_CAEEL 396 EIVQEYDRHlQAVNSITFFDKNRRFASTSDDKSVRIW 432 66889999*999*****8888888899999******* PP == domain 5 score: 2.5 bits; conditional E-value: 2.2 ETTSSEEEEE.ETTSEEEEE CS WD40 19 spdgawlasG.sdDgtvriW 37 sp+ +w++ G ++D+ + ++ tr|O44729|O44729_CAEEL 457 SPNDKWVV-GqCMDNRIVLF 475 9*****98.99889999775 PP == domain 6 score: 25.4 bits; conditional E-value: 1.3e-07 EEEESSSS...EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 5 rtltGHss...vtslafspdgawlasGsdDgtvriWd 38 + ++GH+ + ++fspd+++l+sG+ Dg++ iWd tr|O44729|O44729_CAEEL 488 KAFRGHNAagyACNIDFSPDQSFLISGDADGKLFIWD 524 6699**55567899*************99*******9 PP == domain 7 score: 13.0 bits; conditional E-value: 0.0011 EEEEESSSSEEEEE..EETTSSE.EEEEETTSEEEEEE CS WD40 4 lrtltGHssvtsla..fspdgaw.lasGsdDgtvriWd 38 ++++++H+s t++a ++p+ + ++++++Dg +++W+ tr|O44729|O44729_CAEEL 531 VGKWKAHDS-TCIAalWHPHEKSrMITAGWDGLIKMWN 567 667889933.56666677766666789**********8 PP >> tr|Q95X42|Q95X42_CAEEL Uncharacterized protein OS=Caenorhabditis elegans OX=6239 GN=C05D2.10 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.6 0.2 1.9e-05 0.0029 4 38 .] 133 168 .. 130 168 .. 0.88 2 ! 20.3 0.2 5.5e-06 0.00083 1 38 [] 172 223 .. 172 223 .. 0.75 3 ! 22.9 0.1 8.1e-07 0.00012 3 38 .] 272 308 .. 270 308 .. 0.92 4 ! 24.7 0.2 2.3e-07 3.4e-05 2 38 .] 313 350 .. 312 350 .. 0.93 5 ! 31.4 0.6 1.7e-09 2.6e-07 2 38 .] 356 392 .. 355 392 .. 0.89 6 ? 3.2 0.0 1.3 2e+02 14 38 .] 410 434 .. 398 434 .. 0.87 7 ? 5.3 0.0 0.3 45 9 37 .. 448 479 .. 443 480 .. 0.74 Alignments for each domain: == domain 1 score: 18.6 bits; conditional E-value: 1.9e-05 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 r l+GH ++v+++a ++ + as+s D+t riW+ tr|Q95X42|Q95X42_CAEEL 133 SRLLEGHkDGVWHVAADSTRNICASASADQTARIWS 168 56789**666**************99*********5 PP == domain 2 score: 20.3 bits; conditional E-value: 5.5e-06 TEEEEEEESS.SSEEEEE.............EETTSSEEEEEETTSEEEEEE CS WD40 1 gqclrtltGH.ssvtsla.............fspdgawlasGsdDgtvriWd 38 g cl t+tGH +sv+++a + +g +la++s D + +iW+ tr|Q95X42|Q95X42_CAEEL 172 GACLATYTGHtGSVNCVAisnncavdstegsGPASGLLLATASGDESTHIWK 223 579*******888*****55555555555555555555998877*******5 PP == domain 3 score: 22.9 bits; conditional E-value: 8.1e-07 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++ ltGH +v+++ + g+ ++++s+D+t +Wd tr|Q95X42|Q95X42_CAEEL 272 PVMRLTGHrAPVSCCEWLAGGQQMVTASWDRTANVWD 308 67789***999****9999999999***********9 PP == domain 4 score: 24.7 bits; conditional E-value: 2.3e-07 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 + + +l+GH s +++++++++++++++s+D t r+Wd tr|Q95X42|Q95X42_CAEEL 313 EVVNILSGHeSELNHCSTHSNQKLVLTSSKDSTFRLWD 350 56789****888*************************9 PP == domain 5 score: 31.4 bits; conditional E-value: 1.7e-09 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 q + ++ GH +svts++f+ d + + s+sdD tv+iWd tr|Q95X42|Q95X42_CAEEL 356 QSVAVFQGHqDSVTSVSFNTDYRIV-SSSDDATVKIWD 392 56789****888************7.6788*******9 PP == domain 6 score: 3.2 bits; conditional E-value: 1.3 EEEEEETTSSEEEEEETTSEEEEEE CS WD40 14 tslafspdgawlasGsdDgtvriWd 38 + +a s++++ +a +d+++vri+d tr|Q95X42|Q95X42_CAEEL 410 NRVAISKSHPVIAIPMDNRHVRIYD 434 56888999999999999*******8 PP == domain 7 score: 5.3 bits; conditional E-value: 0.3 SSSS.EEEEE...EETTSSEEEEEETTSEEEEE CS WD40 9 GHss.vtsla...fspdgawlasGsdDgtvriW 37 H vt++a +p +++l++G D+ v W tr|Q95X42|Q95X42_CAEEL 448 CHERmVTCCAwldEHPANNLLTAGF-DRMVAAW 479 674479***8777777777788777.9988666 PP >> tr|O18215|O18215_CAEEL Uncharacterized protein OS=Caenorhabditis elegans OX=6239 GN=CELE_Y53C12B.1 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.2 0.0 0.0001 0.016 12 38 .] 111 137 .. 101 137 .. 0.84 2 ? 2.2 0.0 2.9 4.3e+02 2 34 .. 142 173 .. 141 177 .. 0.73 3 ? 6.3 0.1 0.14 21 2 35 .. 185 219 .. 184 221 .. 0.84 4 ! 12.5 0.3 0.0015 0.23 6 37 .. 356 388 .. 349 389 .. 0.79 5 ! 16.2 0.0 0.00011 0.016 8 37 .. 409 441 .. 402 441 .. 0.82 6 ! 26.4 0.1 6.5e-08 9.8e-06 3 37 .. 469 504 .. 467 505 .. 0.94 7 ! 23.8 0.2 4.1e-07 6.2e-05 5 38 .] 517 551 .. 515 551 .. 0.94 8 ! 13.4 0.2 0.00085 0.13 2 37 .. 556 592 .. 555 593 .. 0.91 9 ! 14.6 0.4 0.00035 0.052 3 38 .] 599 635 .. 597 635 .. 0.84 Alignments for each domain: == domain 1 score: 16.2 bits; conditional E-value: 0.0001 SEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 12 svtslafspdgawlasGsdDgtvriWd 38 ++ + f+ +g++la+Gs D+ v++W+ tr|O18215|O18215_CAEEL 111 PILVMEFNEEGHLLATGSADHIVKVWN 137 455667999*****************8 PP == domain 2 score: 2.2 bits; conditional E-value: 2.9 EEEEEEESSSS.EEEEEEETTSSEEEEEETTSEE CS WD40 2 qclrtltGHss.vtslafspdgawlasGsdDgtv 34 qc++tl+G s v+++ f ++ ++++ G g + tr|O18215|O18215_CAEEL 142 QCTHTLKGP-SvVSAILFGKHEKLVV-GYIEGQL 173 9*******9.5379998888887775.7655555 PP == domain 3 score: 6.3 bits; conditional E-value: 0.14 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvr 35 +++ t++ H s++t+l pd++ +++ s+D+t tr|O18215|O18215_CAEEL 185 KLVNTWKSHnSHITALLQVPDSRVVVALSRDQTMS 219 5788999**777************98559999865 PP == domain 4 score: 12.5 bits; conditional E-value: 0.0015 EEESS.SSEEEEE.EETTSSEEEEEETTSEEEEE CS WD40 6 tltGH.ssvtsla.fspdgawlasGsdDgtvriW 37 + +GH sv s+ d ++las+s+D+++ +W tr|O18215|O18215_CAEEL 356 I-RGHtESVLSVVsPTWDTSLLASCSKDNSIIFW 388 3.79*8888666557778888************* PP == domain 5 score: 16.2 bits; conditional E-value: 0.00011 ESS.SSEEEEEEETTSSE..EEEEETTSEEEEE CS WD40 8 tGH.ssvtslafspdgaw..lasGsdDgtvriW 37 tGH + vt+la s g+ las s D+t+++W tr|O18215|O18215_CAEEL 409 TGHaNTVTALAISNTGRApfLASVSTDCTIKLW 441 7**999****9555555565998899******* PP == domain 6 score: 26.4 bits; conditional E-value: 6.5e-08 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 c t +H ++v++++ s + a++a+G++D+ v++W tr|O18215|O18215_CAEEL 469 CSSTMVAHgKDVNCVDISESDALIATGGMDKLVKLW 504 788999**999************************* PP == domain 7 score: 23.8 bits; conditional E-value: 4.1e-07 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +tl+GH +v +++f ++++ las+s D t++iW+ tr|O18215|O18215_CAEEL 517 GTLSGHrRGVGDVKFAKNSHKLASCSGDMTIKIWN 551 589***888****************88*******8 PP == domain 8 score: 13.4 bits; conditional E-value: 0.00085 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 +cl+t++GH + v + f ++ + l+s++ g ++iW tr|O18215|O18215_CAEEL 556 SCLQTISGHsCAVFRVIFARNDSQLISADSAGIIKIW 592 79*******666**************9966******* PP == domain 9 score: 14.6 bits; conditional E-value: 0.00035 EEEEEESS.SSEEEEE.EETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtsla.fspdgawlasGsdDgtvriWd 38 c ++++H + ++sl+ ++ ++ ++++G+ Dg + +W+ tr|O18215|O18215_CAEEL 599 CECSIDAHtDKIWSLSkNHNESEFVTAGT-DGRIVVWK 635 6677889*555*****9999999998888.*******6 PP >> tr|G5EE12|G5EE12_CAEEL CKA And Striatin Homolog OS=Caenorhabditis elegans OX=6239 GN=cash-1 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.7 0.0 8.2e-06 0.0012 5 38 .] 353 387 .. 349 387 .. 0.92 2 ! 23.3 0.0 6.3e-07 9.4e-05 2 37 .. 404 440 .. 403 441 .. 0.91 3 ! 27.6 0.3 2.6e-08 3.9e-06 4 37 .. 459 493 .. 456 494 .. 0.84 4 ? 2.3 0.0 2.6 4e+02 25 38 .] 574 586 .. 547 586 .. 0.77 5 ! 28.9 0.1 1e-08 1.5e-06 4 38 .] 593 628 .. 590 628 .. 0.89 6 ! 14.3 0.0 0.00043 0.065 2 37 .. 633 673 .. 632 674 .. 0.79 Alignments for each domain: == domain 1 score: 19.7 bits; conditional E-value: 8.2e-06 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 tl+ H +s+++++f+p + l+++s+Dg +++W+ tr|G5EE12|G5EE12_CAEEL 353 VTLRSHlDSIRAMQFHPVEPVLFTASEDGLIKLWN 387 5799***9**************************8 PP == domain 2 score: 23.3 bits; conditional E-value: 6.3e-07 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 ++++t++GH ++v +l sp g+ l +G+ Dg++ + tr|G5EE12|G5EE12_CAEEL 404 EPVYTFRGHkGPVLCLVLSPTGDHLYTGGIDGNICCF 440 6899*****777*********************9876 PP == domain 3 score: 27.6 bits; conditional E-value: 2.6e-08 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 + tltGH + ++s+a++++++ l+s+s D tvr+W tr|G5EE12|G5EE12_CAEEL 459 TETLTGHtDAIWSVAYHSSNSRLVSASSDSTVRLW 493 5689***666*****8888888888877******* PP == domain 4 score: 2.3 bits; conditional E-value: 2.6 EEEEETTSEEEEEE CS WD40 25 lasGsdDgtvriWd 38 l+ G++D+t+r +d tr|G5EE12|G5EE12_CAEEL 574 LI-GGEDRTIRYFD 586 43.999*****876 PP == domain 5 score: 28.9 bits; conditional E-value: 1e-08 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +++ +H +v+sla +p+g +l+sGs Dg++r+W+ tr|G5EE12|G5EE12_CAEEL 593 IHEAIAHvEGVSSLAIDPNGLYLLSGSHDGSIRMWN 628 5666799999****************99*******8 PP == domain 6 score: 14.3 bits; conditional E-value: 0.00043 EEEEEEESS...SS..EEEEEEETTSSEE.EEEETTSEEEEE CS WD40 2 qclrtltGH...ss..vtslafspdgawl.asGsdDgtvriW 37 +cl+++++H ++ vts+af+p+ +++ ++G D +++ tr|G5EE12|G5EE12_CAEEL 633 SCLQEISAHrkkNDsaVTSVAFHPSRSLIgSAGA-DSLAKVY 673 79*******9743399************844444.9877765 PP >> sp|Q9XW12|CIAO1_CAEEL Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog OS=Caenorhabditis elegan # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.0 0.6 5.9e-05 0.0089 17 38 .] 24 45 .. 6 45 .. 0.85 2 ! 16.2 0.1 0.00011 0.017 3 37 .. 58 94 .. 56 95 .. 0.82 3 ! 23.8 0.0 4.3e-07 6.4e-05 4 37 .. 104 138 .. 101 139 .. 0.91 4 ! 20.6 0.1 4.4e-06 0.00066 6 37 .. 151 183 .. 146 184 .. 0.89 5 ! 10.9 0.2 0.0049 0.74 9 36 .. 199 227 .. 191 229 .. 0.85 6 ! 12.6 0.1 0.0014 0.22 13 37 .. 258 282 .. 249 283 .. 0.90 7 ! 25.5 0.1 1.2e-07 1.9e-05 6 37 .. 298 333 .. 293 334 .. 0.83 Alignments for each domain: == domain 1 score: 17.0 bits; conditional E-value: 5.9e-05 EEETTSSEEEEEETTSEEEEEE CS WD40 17 afspdgawlasGsdDgtvriWd 38 ++++ g+ las++dD+ vr+W+ sp|Q9XW12|CIAO1_CAEEL 24 CWHHGGRILASCGDDKAVRVWS 45 79*******************5 PP == domain 2 score: 16.2 bits; conditional E-value: 0.00011 EEEEEE.SS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 3 clrtlt.GH.ssvtslafspdgawlasGsdDgtvriW 37 c +tl+ H v+s+afs dg+ l+s+s D +v ++ sp|Q9XW12|CIAO1_CAEEL 58 CRTTLDdSHtRAVRSVAFSNDGKCLVSASFDASVVVY 94 666775478445****************99*999987 PP == domain 3 score: 23.8 bits; conditional E-value: 4.3e-07 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 + +l+GH s v + fs++ +la++s+D++v +W sp|Q9XW12|CIAO1_CAEEL 104 VNKLEGHeSEVKCAVFSKSDEFLATCSRDKSVWFW 138 56799**888*9999******************** PP == domain 4 score: 20.6 bits; conditional E-value: 4.4e-06 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 6 tltGH.ssvtslafspdgawlasGsdDgtvriW 37 +l H ++v +a++p ++l+s+s+D ++r++ sp|Q9XW12|CIAO1_CAEEL 151 ILQPHtQDVKQVAWHPTEDLLVSCSYDSSIRFY 183 67789889***********************97 PP == domain 5 score: 10.9 bits; conditional E-value: 0.0049 SS.SSEEEEEEETTSSEEEEEETTSEEEE CS WD40 9 GH.ssvtslafspdgawlasGsdDgtvri 36 H + v+s+af+ +g+ l++ ++D+ + + sp|Q9XW12|CIAO1_CAEEL 199 CHvGTVWSIAFDTEGHRLVTVGEDHCIQL 227 78888**************9999**9977 PP == domain 6 score: 12.6 bits; conditional E-value: 0.0014 EEEEEEETTSSEEEEEETTSEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriW 37 +s+a+++ ++ +a+G+ D+++r++ sp|Q9XW12|CIAO1_CAEEL 258 LYSVAWNSTNDVIATGGGDCKIRLF 282 579*************88*****97 PP == domain 7 score: 25.5 bits; conditional E-value: 1.2e-07 EEESS.SSEEEEEEETTSSE...EEEEETTSEEEEE CS WD40 6 tltGH.ssvtslafspdgaw...lasGsdDgtvriW 37 + H +v+++a++p+ ++ l+s+sdDgt+r+W sp|Q9XW12|CIAO1_CAEEL 298 VVGRHeLDVNHVAWNPNPKFsnlLTSASDDGTIRLW 333 55568667**************77788********* PP >> sp|G5EEG7|SMU1_CAEEL Smu-1 suppressor of mec-8 and unc-52 protein OS=Caenorhabditis elegans OX=6239 GN=smu-1 PE=1 SV # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.1 0.0 6.5e-06 0.00098 17 38 .] 221 242 .. 207 242 .. 0.88 2 ! 24.0 0.0 3.7e-07 5.5e-05 13 38 .] 267 292 .. 253 292 .. 0.90 3 ! 22.3 0.8 1.2e-06 0.00019 1 36 [. 296 333 .. 296 334 .. 0.92 4 ! 36.2 0.5 5.3e-11 7.9e-09 1 37 [. 339 376 .. 339 377 .. 0.94 5 ? 0.9 0.0 7.2 1.1e+03 12 26 .. 440 455 .. 426 477 .. 0.67 6 ? 8.0 0.0 0.041 6.2 15 37 .. 486 508 .. 463 509 .. 0.76 Alignments for each domain: == domain 1 score: 20.1 bits; conditional E-value: 6.5e-06 EEETTSSEEEEEETTSEEEEEE CS WD40 17 afspdgawlasGsdDgtvriWd 38 fspd ++l+sGs+Dg + +W+ sp|G5EEG7|SMU1_CAEEL 221 VFSPDANYLVSGSKDGFIEVWN 242 4********************8 PP == domain 2 score: 24.0 bits; conditional E-value: 3.7e-07 EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriWd 38 v++++fs+d+ +la+Gs Dg++++W+ sp|G5EEG7|SMU1_CAEEL 267 VRCISFSRDSEMLATGSIDGKIKVWK 292 9************************6 PP == domain 3 score: 22.3 bits; conditional E-value: 1.2e-06 TEEEEEEE.SS.SSEEEEEEETTSSEEEEEETTSEEEE CS WD40 1 gqclrtlt.GH.ssvtslafspdgawlasGsdDgtvri 36 g+clr ++ +H ++v++++fs+d++ ++sG+ D+ vr+ sp|G5EEG7|SMU1_CAEEL 296 GDCLRRFDrAHtKGVCAVRFSKDNSHILSGGNDHVVRV 333 689999955**999**********************98 PP == domain 4 score: 36.2 bits; conditional E-value: 5.3e-11 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 g+cl++ +GH s +t++++s++g+ ++s+s Dg++r+W sp|G5EEG7|SMU1_CAEEL 339 GKCLKEMRGHsSYITDVRYSDEGNHIISCSTDGSIRVW 376 79********555************************* PP == domain 5 score: 0.9 bits; conditional E-value: 7.2 S..EEEEEEETTSSEEE CS WD40 12 s..vtslafspdgawla 26 + ++++ sp g w sp|G5EEG7|SMU1_CAEEL 440 GdfINCI-LSPKGEWAY 455 2459999.999999954 PP == domain 6 score: 8.0 bits; conditional E-value: 0.041 EEEEETTSSEEEEEETTSEEEEE CS WD40 15 slafspdgawlasGsdDgtvriW 37 +la +p+++++as +Dg +++W sp|G5EEG7|SMU1_CAEEL 486 GLAHHPHQNLIASYAEDGLLKLW 508 899*******986579******* PP >> tr|O62471|O62471_CAEEL QUInine non-avoider OS=Caenorhabditis elegans OX=6239 GN=qui-1 PE=1 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.6 0.3 1.3e-08 1.9e-06 2 37 .. 902 938 .. 901 939 .. 0.92 2 ? 8.2 0.1 0.037 5.6 3 35 .. 945 978 .. 943 981 .. 0.84 3 ! 15.7 0.1 0.00015 0.022 2 38 .] 986 1023 .. 985 1023 .. 0.93 4 ? 2.1 0.0 3.1 4.7e+02 12 37 .. 1039 1064 .. 1027 1065 .. 0.81 5 ? 3.6 0.0 1.1 1.6e+02 1 25 [. 1069 1094 .. 1069 1106 .. 0.69 6 ? 4.6 0.0 0.5 76 9 38 .] 1119 1148 .. 1110 1148 .. 0.83 7 ? 8.8 0.1 0.024 3.6 12 38 .] 1162 1192 .. 1151 1192 .. 0.82 8 ? 6.2 0.1 0.15 23 2 29 .. 1197 1226 .. 1195 1235 .. 0.75 9 ! 19.1 0.0 1.3e-05 0.0019 9 37 .. 1333 1363 .. 1328 1364 .. 0.81 10 ! 22.0 0.1 1.5e-06 0.00023 4 38 .] 1371 1406 .. 1368 1406 .. 0.90 Alignments for each domain: == domain 1 score: 28.6 bits; conditional E-value: 1.3e-08 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 q+++t++GH vt+l+ s d+++++s s D+tv +W tr|O62471|O62471_CAEEL 902 QLIGTFKGHtAAVTCLCSSNDSSLFVSTSFDKTVNVW 938 7899*****777*************99999******* PP == domain 2 score: 8.2 bits; conditional E-value: 0.037 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvr 35 ++ +lt H vt+ +d ++l+++s D + + tr|O62471|O62471_CAEEL 945 PTMSLTHHtAKVTCAILTSDDQYLITASADSSAK 978 67889999655****9999999999999999877 PP == domain 3 score: 15.7 bits; conditional E-value: 0.00015 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 + +r++ H +sv sl+ +++++l++Gs D v +Wd tr|O62471|O62471_CAEEL 986 EVMRSFNDHtGSVVSLQLTSNNQFLITGSGDFVVQMWD 1023 67899****88899**************99*******9 PP == domain 4 score: 2.1 bits; conditional E-value: 3.1 SEEEEEEETTSSEEEEEETTSEEEEE CS WD40 12 svtslafspdgawlasGsdDgtvriW 37 +v+ la ++ a+++ +++D t++++ tr|O62471|O62471_CAEEL 1039 PVSTLAITSNDAFVVVACEDETLKVF 1064 689999999****998899*****97 PP == domain 5 score: 3.6 bits; conditional E-value: 1.1 TEEEEEEESS.SSEEEEEEETTSSEE CS WD40 1 gqclrtltGH.ssvtslafspdgawl 25 gq l++l GH + v+sl +d l tr|O62471|O62471_CAEEL 1069 GQELHELMGHeGKVNSLVCAQDDCQL 1094 6899******777*999544444444 PP == domain 6 score: 4.6 bits; conditional E-value: 0.5 SS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 9 GH.ssvtslafspdgawlasGsdDgtvriWd 38 ++ ++++sl+ s+d+ +l+s + ++v iW+ tr|O62471|O62471_CAEEL 1119 AQpFPICSLKISSDNYFLISPC-GPKVTIWN 1148 44567**************989.*****998 PP == domain 7 score: 8.8 bits; conditional E-value: 0.024 S....EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 12 s....vtslafspdgawlasGsdDgtvriWd 38 + t++a s d ++ a+G+ +g v +Wd tr|O62471|O62471_CAEEL 1162 DkegfLTAVALSNDDKYAACGTNNGIVALWD 1192 2456689***********99999*******9 PP == domain 8 score: 6.2 bits; conditional E-value: 0.15 EEEEEEESS..SSEEEEEEETTSSEEEEEE CS WD40 2 qclrtltGH..ssvtslafspdgawlasGs 29 qc+ t +++t++++s d+++ +sG tr|O62471|O62471_CAEEL 1197 QCVFTTIQNkgDPITCIRYSVDSQYCISGN 1226 5666666665334************99985 PP == domain 9 score: 19.1 bits; conditional E-value: 1.3e-05 SSSS.EEEEE.EETTSSEEEEEETTSEEEEE CS WD40 9 GHss.vtsla.fspdgawlasGsdDgtvriW 37 Hs+ +t++a ++ g+++a+Gs+D +++iW tr|O62471|O62471_CAEEL 1333 SHSDeITCFAtSPKGGNFIATGSRDMSLKIW 1363 49556*****6666666689*********** PP == domain 10 score: 22.0 bits; conditional E-value: 1.5e-06 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +++l GH + vt+++ s d ++++sG +D ++ +W+ tr|O62471|O62471_CAEEL 1371 TQVLVGHeNVVTCCCISFDERLVVSGARDEKIIVWN 1406 67899**6558************************8 PP >> sp|Q10051|PRP19_CAEEL Pre-mRNA-processing factor 19 OS=Caenorhabditis elegans OX=6239 GN=prp-19 PE=3 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.0 0.1 0.18 27 10 38 .] 207 237 .. 198 237 .. 0.72 2 ! 27.3 0.0 3.2e-08 4.8e-06 2 38 .] 242 279 .. 241 279 .. 0.92 3 ! 10.5 0.1 0.0069 1 8 31 .. 290 314 .. 284 316 .. 0.86 4 ! 13.0 0.1 0.0011 0.16 13 38 .] 341 366 .. 327 366 .. 0.87 5 ! 32.0 0.0 1.1e-09 1.7e-07 7 38 .] 376 408 .. 369 408 .. 0.92 6 ? 1.2 0.0 5.9 8.9e+02 3 25 .. 414 438 .. 412 445 .. 0.70 7 ! 15.9 0.1 0.00014 0.02 3 37 .. 455 490 .. 453 491 .. 0.89 Alignments for each domain: == domain 1 score: 6.0 bits; conditional E-value: 0.18 S.SS...EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 10 H.ss...vtslafspdgawlasGsdDgtvriWd 38 H ++ +t+l + g++ ++G+ D+tv ++d sp|Q10051|PRP19_CAEEL 207 HsTGtpgITAL--DIKGNLSLTGGIDKTVVLYD 237 43224579999..556666669*********98 PP == domain 2 score: 27.3 bits; conditional E-value: 3.2e-08 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 q ++t++GH + ++++ +pd+ +s+s D ++r+W+ sp|Q10051|PRP19_CAEEL 242 QVMQTFKGHnKKINAVVLHPDNITAISASADSHIRVWS 279 7789*****777************999999*******5 PP == domain 3 score: 10.5 bits; conditional E-value: 0.0069 ESS.SSEEEEEEETTSSEEEEEETT CS WD40 8 tGH.ssvtslafspdgawlasGsdD 31 + H +vt+++ + +g++++s+sdD sp|Q10051|PRP19_CAEEL 290 DVHqAPVTDISLNASGDYILSASDD 314 579788*****************77 PP == domain 4 score: 13.0 bits; conditional E-value: 0.0011 EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriWd 38 v+s+ f+pdg + +G D v+iWd sp|Q10051|PRP19_CAEEL 341 VHSIEFHPDGLIFGTGAADAVVKIWD 366 89**********878989*******9 PP == domain 5 score: 32.0 bits; conditional E-value: 1.1e-09 EESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 7 ltGH.ssvtslafspdgawlasGsdDgtvriWd 38 + GH v+s+afs +g +la+Gs+Dg v++Wd sp|Q10051|PRP19_CAEEL 376 FPGHtAAVRSIAFSENGYYLATGSEDGEVKLWD 408 88**777*************************9 PP == domain 6 score: 1.2 bits; conditional E-value: 5.9 EEEEEESS..SSEEEEEEETTSSEE CS WD40 3 clrtltGH..ssvtslafspdgawl 25 +l+t+ ++++sl+f+ g++l sp|Q10051|PRP19_CAEEL 414 NLKTFANEekQPINSLSFDMTGTFL 438 566664334345********99998 PP == domain 7 score: 15.9 bits; conditional E-value: 0.00014 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 + +l+ H ++vt+++f + + l+++s D+++r++ sp|Q10051|PRP19_CAEEL 455 EVVSLSDHsGPVTGVRFGENARSLVTCSLDKSLRVF 490 5678999*777***********************97 PP >> tr|Q19864|Q19864_CAEEL Cleavage and Polyadenylation Factor OS=Caenorhabditis elegans OX=6239 GN=cpf-1 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.0 0.0 6.2e-05 0.0093 7 36 .. 105 135 .. 100 137 .. 0.88 2 ! 21.9 0.1 1.7e-06 0.00025 4 38 .] 163 198 .. 161 198 .. 0.94 3 ? 7.2 0.0 0.073 11 12 38 .] 216 242 .. 207 242 .. 0.89 4 ! 20.9 0.1 3.5e-06 0.00052 10 38 .] 258 287 .. 253 287 .. 0.92 5 ! 23.8 0.0 4.3e-07 6.5e-05 2 37 .. 292 330 .. 291 331 .. 0.88 6 ? 7.8 0.0 0.047 7 9 37 .. 392 421 .. 385 421 .. 0.79 Alignments for each domain: == domain 1 score: 17.0 bits; conditional E-value: 6.2e-05 EESS.SSEEEEEEETTSSEEEEEETTSEEEE CS WD40 7 ltGH.ssvtslafspdgawlasGsdDgtvri 36 lt H + ++ af++dg+++a+Gs D++++i tr|Q19864|Q19864_CAEEL 105 LTVHkAPCRAAAFNSDGSLVATGSADCSIKI 135 577866689999******************9 PP == domain 2 score: 21.9 bits; conditional E-value: 1.7e-06 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +rtl H ++v+ + f+p + l+sGs D+tv+++d tr|Q19864|Q19864_CAEEL 163 IRTLYDHvDDVNTVIFHPRDSILISGSNDKTVKLFD 198 689999*999************************98 PP == domain 3 score: 7.2 bits; conditional E-value: 0.073 SEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 12 svtslafspdgawlasGsdDgtvriWd 38 +v++l+ +p g +l+ ++d +tvr+++ tr|Q19864|Q19864_CAEEL 216 PVRALSCHPGGEFLLVATDHPTVRLYN 242 4899**********99999******97 PP == domain 4 score: 20.9 bits; conditional E-value: 3.5e-06 S.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 10 H.ssvtslafspdgawlasGsdDgtvriWd 38 H svt++ +s + ++ +++s+Dg+v+iWd tr|Q19864|Q19864_CAEEL 258 HtESVTDVHYSENARLYVTASKDGHVKIWD 287 8778************899**********9 PP == domain 5 score: 23.8 bits; conditional E-value: 4.3e-07 EEEEEEE.SS..SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 2 qclrtlt.GH..ssvtslafspdgawlasGsdDgtvriW 37 +c+ t++ +H ss++s +f ++g++++++++D v++W tr|Q19864|Q19864_CAEEL 292 RCVETFKrAHdgSSICSAKFTKNGKYILTSGMDSIVKLW 330 68889966**8666*************99989******* PP == domain 6 score: 7.8 bits; conditional E-value: 0.047 SS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 9 GH.ssvtslafspdgawlasGsdDgtvriW 37 GH s + + sp+ + +++GsdD+ r+W tr|Q19864|Q19864_CAEEL 392 GHtSACRTFVHSPSMPAFMTGSDDHRARFW 421 7855566666788888889*********** PP >> sp|O16519|GAD1_CAEEL Gastrulation defective protein 1 OS=Caenorhabditis elegans OX=6239 GN=gad-1 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.1 0.0 0.079 12 10 38 .] 121 151 .. 114 151 .. 0.85 2 ? 9.5 0.0 0.014 2.1 12 32 .. 171 192 .. 163 204 .. 0.75 3 ! 24.2 0.0 3.3e-07 4.9e-05 6 38 .] 219 253 .. 216 253 .. 0.87 4 ! 20.8 0.1 3.7e-06 0.00056 17 37 .. 286 307 .. 262 308 .. 0.82 5 ! 21.7 0.0 1.9e-06 0.00029 8 38 .] 322 353 .. 316 353 .. 0.86 6 ? 6.5 0.0 0.12 18 14 37 .. 422 445 .. 411 446 .. 0.83 Alignments for each domain: == domain 1 score: 7.1 bits; conditional E-value: 0.079 S..SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 10 H..ssvtslafspdgawlasGsdDgtvriWd 38 H + +++l++ p g +asG+ D v+++d sp|O16519|GAD1_CAEEL 121 HgtQAISALRVEPPGVRFASGGLDYYVKLFD 151 653449***********************98 PP == domain 2 score: 9.5 bits; conditional E-value: 0.014 S.EEEEEEETTSSEEEEEETTS CS WD40 12 s.vtslafspdgawlasGsdDg 32 + ++slafsp+g l+ +s sp|O16519|GAD1_CAEEL 171 HvINSLAFSPNGETLVVASGEA 192 336***********97554344 PP == domain 3 score: 24.2 bits; conditional E-value: 3.3e-07 EEESS.SSEEEEEEETTSSE.EEEEETTSEEEEEE CS WD40 6 tltGH.ssvtslafspdgaw.lasGsdDgtvriWd 38 + +GH v+++ f+p ++ ++s+sdDg++r+W+ sp|O16519|GAD1_CAEEL 219 ITKGHtATVNCVEFNPLNKNeFISCSDDGSLRLWN 253 568**777****999999999889**********8 PP == domain 4 score: 20.8 bits; conditional E-value: 3.7e-06 E.EETTSSEEEEEETTSEEEEE CS WD40 17 a.fspdgawlasGsdDgtvriW 37 + fspdg+w+a+G+dDg+v W sp|O16519|GAD1_CAEEL 286 CtFSPDGKWIAAGCDDGSVQAW 307 349****************988 PP == domain 5 score: 21.7 bits; conditional E-value: 1.9e-06 ESS.SSEEEEEEETTSSEEEE.EETTSEEEEEE CS WD40 8 tGH.ssvtslafspdgawlas.GsdDgtvriWd 38 ++H +s+ts+afspd++ l+s G D t+++W+ sp|O16519|GAD1_CAEEL 322 KAHnGSITSIAFSPDSKRLLSrGF-DDTLKMWS 353 59*777************996477.*******5 PP == domain 6 score: 6.5 bits; conditional E-value: 0.12 EEEEEETTSSEEEEE.ETTSEEEEE CS WD40 14 tslafspdgawlasG.sdDgtvriW 37 + ++++p + +++G s Dgt++++ sp|O16519|GAD1_CAEEL 422 HRIQWHPRLNQIIAGlS-DGTIHVY 445 45669999999****88.****997 PP >> tr|A9D0C3|A9D0C3_CAEEL Uncharacterized protein OS=Caenorhabditis elegans OX=6239 GN=CELE_T02H6.1 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 12.5 0.0 0.0016 0.24 6 33 .. 135 163 .. 131 167 .. 0.79 2 ! 23.4 0.0 5.8e-07 8.7e-05 9 38 .] 194 224 .. 188 224 .. 0.87 3 ! 19.0 0.0 1.4e-05 0.002 3 38 .] 230 266 .. 228 266 .. 0.90 4 ? 7.7 0.0 0.053 7.9 6 38 .] 275 308 .. 271 308 .. 0.71 5 ? 6.9 0.0 0.093 14 24 38 .] 336 350 .. 316 350 .. 0.77 6 ! 14.5 0.0 0.00037 0.056 12 38 .] 369 399 .. 356 399 .. 0.80 7 ? 4.6 0.0 0.48 72 12 29 .. 418 436 .. 407 444 .. 0.72 Alignments for each domain: == domain 1 score: 12.5 bits; conditional E-value: 0.0016 EEESS..SSEEEEEEETTSSEEEEEETTSE CS WD40 6 tltGH..ssvtslafspdgawlasGsdDgt 33 +++ H s+ ++afspd ++++s+++ + tr|A9D0C3|A9D0C3_CAEEL 135 SYKPHrlSPL-CVAFSPDAKYVISCGKESS 163 5777876666.**************97555 PP == domain 2 score: 23.4 bits; conditional E-value: 5.8e-07 SS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 9 GH.ssvtslafspdgawlasGsdDgtvriWd 38 +H + + +a+spd++++asG+ D+ v+iW+ tr|A9D0C3|A9D0C3_CAEEL 194 AHyGVIFTVAVSPDQKFIASGGFDQVVKIWN 224 67333799*************99*******8 PP == domain 3 score: 19.0 bits; conditional E-value: 1.4e-05 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +++ l+GH +++ sl f+ + l s+s D++v++Wd tr|A9D0C3|A9D0C3_CAEEL 230 HIKDLSGHrGPIFSLTFQLKTNNLYSASQDRSVKMWD 266 57789***999****99888888*************9 PP == domain 4 score: 7.7 bits; conditional E-value: 0.053 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 6 tltGH.ssvtslafspdgawlasGsdDgtvriWd 38 t GH ++v + + + ++ + G++D++ r+W+ tr|A9D0C3|A9D0C3_CAEEL 275 TMYGHqDGVQQIGVLSKQRVATVGGRDRSARLWK 308 566996667766555555556679*********6 PP == domain 5 score: 6.9 bits; conditional E-value: 0.093 EEEEEETTSEEEEEE CS WD40 24 wlasGsdDgtvriWd 38 +a+Gs Dg++ +W+ tr|A9D0C3|A9D0C3_CAEEL 336 HFATGSADGSIALWS 350 3699**********5 PP == domain 6 score: 14.5 bits; conditional E-value: 0.00037 S....EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 12 s....vtslafspdgawlasGsdDgtvriWd 38 + + +la+ p++++lasGs g +++W+ tr|A9D0C3|A9D0C3_CAEEL 369 GsgrwIVALAVLPYSDLLASGSNEGELKLWK 399 2457788***********************6 PP == domain 7 score: 4.6 bits; conditional E-value: 0.48 SEEEEEEETTSSEEEEE.E CS WD40 12 svtslafspdgawlasG.s 29 +++s+ f p+g+ ++ G + tr|A9D0C3|A9D0C3_CAEEL 418 FINSINFAPNGKSIVVGaG 436 49***********998843 PP >> sp|P90916|LIN53_CAEEL Probable histone-binding protein lin-53 OS=Caenorhabditis elegans OX=6239 GN=lin-53 PE=1 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 13.8 0.1 0.0006 0.091 2 38 .] 163 201 .. 162 201 .. 0.83 2 ! 14.5 0.6 0.00037 0.056 6 38 .] 217 251 .. 212 251 .. 0.75 3 ! 29.8 0.0 5.4e-09 8.1e-07 4 38 .] 258 294 .. 255 294 .. 0.84 4 ! 21.9 0.1 1.6e-06 0.00025 3 38 .] 301 338 .. 299 338 .. 0.87 5 ! 21.4 0.1 2.4e-06 0.00036 4 37 .. 359 394 .. 356 395 .. 0.85 Alignments for each domain: == domain 1 score: 13.8 bits; conditional E-value: 0.0006 EEEEEEESS..SSEEEEEEETTSSEEE.EEETTSEEEEEE CS WD40 2 qclrtltGH..ssvtslafspdgawla.sGsdDgtvriWd 38 ++l l+GH + ++l+++p++ l+ s+sdD+tv Wd sp|P90916|LIN53_CAEEL 163 NPLIRLKGHtkEG-YGLSWNPNKEGLIlSASDDQTVCHWD 201 6777899997444.79*********7559**********9 PP == domain 2 score: 14.5 bits; conditional E-value: 0.00037 EEESSSS.EEEEEEETTSSEEEEE..ETTSEEEEEE CS WD40 6 tltGHss.vtslafspdgawlasG..sdDgtvriWd 38 +++GH s v ++a++ ++ ++ G +dD+++ iWd sp|P90916|LIN53_CAEEL 217 VFKGHESvVEDVAWHVLHDGVF-GsvGDDKKLLIWD 251 79***6647***7666666677.52458*******9 PP == domain 3 score: 29.8 bits; conditional E-value: 5.4e-09 EEEEESS.SSEEEEEEETTSSEE.EEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawl.asGsdDgtvriWd 38 + +++H v++laf+p++ ++ a+Gs D+tv +Wd sp|P90916|LIN53_CAEEL 258 GHCIDAHsAEVNCLAFNPYSEFIlATGSADKTVALWD 294 5667899444************6379**********9 PP == domain 4 score: 21.9 bits; conditional E-value: 1.6e-06 EEEEEESS.SSEEEEEEETTSSEEE.EEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawla.sGsdDgtvriWd 38 +l++++ H + + +++sp++ ++ s++ D+ +++Wd sp|P90916|LIN53_CAEEL 301 KLHSFESHrDEIFQVQWSPHNETILaSSGTDKRLHVWD 338 68******888************7525567*******9 PP == domain 5 score: 21.4 bits; conditional E-value: 2.4e-06 EEEEESS.SSEEEEEEETTSSEEEEE.ETTSEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasG.sdDgtvriW 37 l + GH +++++++p+ +w++++ s+D+ + +W sp|P90916|LIN53_CAEEL 359 LFIHGGHtAKISDFSWNPNEPWVVCSvSEDNILQVW 394 56667**666*************977799******* PP >> sp|P91341|PWP2_CAEEL Periodic tryptophan protein 2 homolog OS=Caenorhabditis elegans OX=6239 GN=F55F8.3 PE=3 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.9 0.0 0.39 59 4 28 .. 90 114 .. 87 121 .. 0.85 2 ! 13.4 0.1 0.00082 0.12 13 36 .. 149 172 .. 136 173 .. 0.82 3 ? 0.9 0.1 7.5 1.1e+03 11 34 .. 272 297 .. 263 300 .. 0.76 4 ? 3.2 0.0 1.3 2e+02 13 32 .. 318 337 .. 305 342 .. 0.76 5 ! 23.5 0.0 5.1e-07 7.7e-05 9 38 .] 358 388 .. 350 388 .. 0.86 6 ! 16.4 0.3 9.1e-05 0.014 3 35 .. 394 427 .. 392 430 .. 0.92 7 ! 22.3 2.2 1.3e-06 0.00019 3 37 .. 480 513 .. 478 514 .. 0.88 8 ? 8.8 0.0 0.024 3.6 14 35 .. 592 613 .. 574 616 .. 0.77 Alignments for each domain: == domain 1 score: 4.9 bits; conditional E-value: 0.39 EEEEESSSSEEEEEEETTSSEEEEE CS WD40 4 lrtltGHssvtslafspdgawlasG 28 ++t++ +++ sl++spd + +a + sp|P91341|PWP2_CAEEL 90 IYTFRSNKPIGSLQWSPDATRVAIC 114 678999999**********999877 PP == domain 2 score: 13.4 bits; conditional E-value: 0.00082 EEEEEEETTSSEEEEEETTSEEEE CS WD40 13 vtslafspdgawlasGsdDgtvri 36 +++s+d ++l+sG++D+ vr+ sp|P91341|PWP2_CAEEL 149 LKTIDWSDDANLLVSGGEDRVVRV 172 66799*****************97 PP == domain 3 score: 0.9 bits; conditional E-value: 7.5 SS..EEEEEEETTSSEEEEEETTSEE CS WD40 11 ss..vtslafspdgawlasGsdDgtv 34 +s vt+ +f+++ + la++ +g + sp|P91341|PWP2_CAEEL 272 KSvdVTAARFHKETNILATAFNNGVI 297 344589999*********99867766 PP == domain 4 score: 3.2 bits; conditional E-value: 1.3 EEEEEEETTSSEEEEEETTS CS WD40 13 vtslafspdgawlasGsdDg 32 + +a++ g+wla G+ +g sp|P91341|PWP2_CAEEL 318 IQTVAWNLTGDWLAIGCGKG 337 88999*********986455 PP == domain 5 score: 23.5 bits; conditional E-value: 5.1e-07 SSSS..EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 9 GHss..vtslafspdgawlasGsdDgtvriWd 38 +H s +t +spdg+++a+G +Dg+v+iW+ sp|P91341|PWP2_CAEEL 358 AH-SlrITTAEYSPDGSLMATGAEDGKVKIWN 388 67.44699999********************8 PP == domain 6 score: 16.4 bits; conditional E-value: 9.1e-05 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvr 35 c+ t++ H s+vt++++ ++g+ ++s+s Dgtvr sp|P91341|PWP2_CAEEL 394 CTVTFDEHtSGVTAVKWTQSGRAILSASLDGTVR 427 778999**888**********************9 PP == domain 7 score: 22.3 bits; conditional E-value: 1.3e-06 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 +l +l+GH s ++s+ + +g+ ++sGs+D+t+++W sp|P91341|PWP2_CAEEL 480 LLDILSGHeSAISSI--DIHGNHIVSGSWDRTIKMW 513 67899***888*999..77888899*********** PP == domain 8 score: 8.8 bits; conditional E-value: 0.024 EEEEEETTSSEEEEEETTSEEE CS WD40 14 tslafspdgawlasGsdDgtvr 35 t ++fspdg++l++G++ ++ sp|P91341|PWP2_CAEEL 592 TRIRFSPDGNLLLAGGESNNFC 613 6778***********9766655 PP >> tr|H2KZG7|H2KZG7_CAEEL NeMiTiN (Neuronal enriched MAP interacting protein) homolog OS=Caenorhabditis elegans OX=6239 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.9 0.0 2.2e-08 3.3e-06 8 36 .. 677 706 .. 672 706 .. 0.91 2 ! 24.3 0.1 3e-07 4.5e-05 1 38 [] 763 802 .. 763 802 .. 0.95 3 ! 21.0 0.1 3.3e-06 0.0005 8 38 .] 818 850 .. 812 850 .. 0.87 4 ? 9.9 0.0 0.01 1.6 3 36 .. 856 890 .. 854 891 .. 0.89 5 ? 4.1 0.3 0.73 1.1e+02 10 38 .] 909 938 .. 903 938 .. 0.77 Alignments for each domain: == domain 1 score: 27.9 bits; conditional E-value: 2.2e-08 ESS.SSEEEEEEETTSSEEEEEETTSEEEE CS WD40 8 tGH.ssvtslafspdgawlasGsdDgtvri 36 + H +sv++l+f+p+g++la+Gs D+t+r+ tr|H2KZG7|H2KZG7_CAEEL 677 KQHrGSVYCLSFNPNGDLLATGSNDKTIRL 706 679999**********************97 PP == domain 2 score: 24.3 bits; conditional E-value: 3e-07 TEEEEEEESS.SSEEEEE.EETTSSEEEEEETTSEEEEEE CS WD40 1 gqclrtltGH.ssvtsla.fspdgawlasGsdDgtvriWd 38 gq++++ +GH ++ +l +s+ g+ ++s+s D+t+r+Wd tr|H2KZG7|H2KZG7_CAEEL 763 GQLIQSMKGHtAPILGLYtWSQAGNQFVSCSQDKTIRFWD 802 68999*****888**************************9 PP == domain 3 score: 21.0 bits; conditional E-value: 3.3e-06 ESS..SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 8 tGH..ssvtslafspdgawlasGsdDgtvriWd 38 + H s+vts++++p+g++l+sG++D +v ++d tr|H2KZG7|H2KZG7_CAEEL 818 KSHnaSPVTSVCVDPNGKLLVSGHEDASVALFD 850 6797666*******************9998876 PP == domain 4 score: 9.9 bits; conditional E-value: 0.01 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvri 36 l+t++ H + v+ ++fs +l+++s+D+ v i tr|H2KZG7|H2KZG7_CAEEL 856 ILQTFRPHgDEVRTVRFSNAAYYLLTASYDKRVVI 890 6899****666*****************9**9976 PP == domain 5 score: 4.1 bits; conditional E-value: 0.73 SSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 10 Hss.vtslafspdgawlasGsdDgtvriWd 38 Hs+ v ++++p+ ++s s D++ +W+ tr|H2KZG7|H2KZG7_CAEEL 909 HSDkVVQCRWHPHDFSFLSTSADRSAVLWS 938 7455778888887777777777*******5 PP >> tr|G5EEV4|G5EEV4_CAEEL SYM-4 OS=Caenorhabditis elegans OX=6239 GN=sym-4 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.7 0.0 7.2e-05 0.011 9 37 .. 615 644 .. 608 645 .. 0.89 2 ! 22.8 0.1 8.7e-07 0.00013 5 37 .. 711 743 .. 707 744 .. 0.87 3 ! 19.2 0.1 1.2e-05 0.0018 2 37 .. 749 785 .. 748 786 .. 0.81 4 ? 3.4 0.0 1.2 1.8e+02 12 36 .. 802 826 .. 790 828 .. 0.85 5 ? 7.4 0.0 0.064 9.7 8 38 .] 849 876 .. 841 876 .. 0.76 6 ! 18.5 0.1 2e-05 0.003 10 37 .. 893 919 .. 883 920 .. 0.84 Alignments for each domain: == domain 1 score: 16.7 bits; conditional E-value: 7.2e-05 SS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 9 GH.ssvtslafspdgawlasGsdDgtvriW 37 H + +++++fs g+++a+++ D +r+W tr|G5EEV4|G5EEV4_CAEEL 615 EHtGAIWCIKFSICGKLMATAGQDSILRVW 644 58556************************* PP == domain 2 score: 22.8 bits; conditional E-value: 8.7e-07 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvriW 37 l+GH ++ ++++s++ l+sG+ D+tv++W tr|G5EEV4|G5EEV4_CAEEL 711 ALLKGHtADILDVSWSKNYFILSSGM-DRTVKLW 743 5689**888*********99998888.******* PP == domain 3 score: 19.2 bits; conditional E-value: 1.2e-05 EEEEEEESS.SSEEEEE.EETTSSEEEEEETTSEEEEE CS WD40 2 qclrtltGH.ssvtsla.fspdgawlasGsdDgtvriW 37 +cl + H ++vt++a ++d ++++sGs Dg++r+W tr|G5EEV4|G5EEV4_CAEEL 749 ECLCCF-QHiDFVTCVAfLPKDDRYFLSGSLDGKLRMW 785 577777.59999*****6666666699*********** PP == domain 4 score: 3.4 bits; conditional E-value: 1.2 SEEEEEEETTSSEEEEEETTSEEEE CS WD40 12 svtslafspdgawlasGsdDgtvri 36 +t++ f ++g++ + G++Dg++ + tr|G5EEV4|G5EEV4_CAEEL 802 YITAMTFVKSGKFAVVGTYDGKCIF 826 499**********999*99**9876 PP == domain 5 score: 7.4 bits; conditional E-value: 0.064 ESSSSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 8 tGHssvtslafspdgawlasGsdDgtvriWd 38 +GH vt+l + d ++l+++ D +r++d tr|G5EEV4|G5EEV4_CAEEL 849 RGH-KVTGLTSHGD-KLLVTSN-DSRIRMYD 876 699.7****44444.5556777.******98 PP == domain 6 score: 18.5 bits; conditional E-value: 2e-05 SSSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 10 HssvtslafspdgawlasGsdDgtvriW 37 Hs + afspdg+ +++Gs+D+ v+iW tr|G5EEV4|G5EEV4_CAEEL 893 HSQI-RAAFSPDGRHIICGSEDKFVYIW 919 6557.556******************** PP >> tr|Q09649|Q09649_CAEEL FiZzy Related family OS=Caenorhabditis elegans OX=6239 GN=fzr-1 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.3 0.1 0.068 10 12 38 .] 439 466 .. 426 466 .. 0.80 2 ! 19.5 0.2 1e-05 0.0015 2 35 .. 471 503 .. 470 506 .. 0.80 3 ! 27.2 0.0 3.7e-08 5.6e-06 5 38 .] 516 550 .. 513 550 .. 0.94 4 ! 20.8 0.1 3.8e-06 0.00058 2 38 .] 555 595 .. 554 595 .. 0.83 5 ? 0.5 0.3 9.5 1.4e+03 6 29 .. 607 627 .. 600 638 .. 0.73 6 ! 16.5 0.0 8.6e-05 0.013 2 37 .. 643 679 .. 642 680 .. 0.89 Alignments for each domain: == domain 1 score: 7.3 bits; conditional E-value: 0.068 S.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 12 s.vtslafspdgawlasGsdDgtvriWd 38 + vts+++++ g++la G+ g iWd tr|Q09649|Q09649_CAEEL 439 DqVTSVQWCDKGDLLAVGTSRGVTQIWD 466 25****************6588888887 PP == domain 2 score: 19.5 bits; conditional E-value: 1e-05 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvr 35 +++r+ltGH s v +la++ d ++sGs+D+t++ tr|Q09649|Q09649_CAEEL 471 KKTRELTGHsSRVGCLAWNADT--ICSGSRDRTIM 503 67899****555****775555..559******97 PP == domain 3 score: 27.2 bits; conditional E-value: 3.7e-08 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 r+lt H + v++l++spd+++lasG+ D+ + +W+ tr|Q09649|Q09649_CAEEL 516 RKLTNHrQEVCGLKWSPDKQLLASGGNDNQLLVWN 550 67899*999*************************8 PP == domain 4 score: 20.8 bits; conditional E-value: 3.8e-06 EEEEEEESS.SSEEEEEEETTSSEEE.EEE..TTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawla.sGs..dDgtvriWd 38 ++++t+t H v +la+sp+++ l+ sG+ D+ +r+W+ tr|Q09649|Q09649_CAEEL 555 EPIQTYTQHnAAVKALAWSPHHHGLLvSGGgtADRCLRFWN 595 6899*****555************753875447*******8 PP == domain 5 score: 0.5 bits; conditional E-value: 9.5 EEESSSSEEEEEEETTSSEEEEEE CS WD40 6 tltGHssvtslafspdgawlasGs 29 t G v+ +a+s++++ l+s + tr|Q09649|Q09649_CAEEL 607 T--GS-QVCNVAWSKHSSELVSTH 627 4..33.5999*9**9999998753 PP == domain 6 score: 16.5 bits; conditional E-value: 8.6e-05 EEEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEE CS WD40 2 qclrtltGHss.vtslafspdgawlasGsdDgtvriW 37 q++++l GH+ v la spdg +++G D t+r+W tr|Q09649|Q09649_CAEEL 643 QPVTKLVGHQYrVLYLAMSPDGESIVTGAGDETLRFW 679 789999***556****************66******* PP >> tr|Q19986|Q19986_CAEEL Uncharacterized protein OS=Caenorhabditis elegans OX=6239 GN=CELE_F33G12.2 PE=1 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.2 0.1 2.7e-06 0.00041 13 38 .] 19 44 .. 11 44 .. 0.86 2 ! 12.9 0.0 0.0012 0.18 3 38 .] 50 86 .. 48 86 .. 0.91 3 ! 15.7 0.0 0.00015 0.023 1 33 [. 90 123 .. 90 128 .. 0.90 4 ? 4.4 0.0 0.58 88 3 37 .. 136 169 .. 134 170 .. 0.71 5 ! 11.6 0.0 0.003 0.46 12 38 .] 184 210 .. 175 210 .. 0.88 6 ! 13.2 0.0 0.00095 0.14 1 37 [. 214 253 .. 214 254 .. 0.89 7 ? 1.7 0.0 4.1 6.1e+02 10 37 .. 266 294 .. 258 295 .. 0.74 Alignments for each domain: == domain 1 score: 21.2 bits; conditional E-value: 2.7e-06 EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriWd 38 v++++++ dg++ ++++ D+tv++W+ tr|Q19986|Q19986_CAEEL 19 VRAVRYNVDGNYCVTCGSDKTVKLWN 44 999*********887766*******8 PP == domain 2 score: 12.9 bits; conditional E-value: 0.0012 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +l+t++G + v + a s+d++ +a+G+ D+ + ++d tr|Q19986|Q19986_CAEEL 50 LLKTYSGTgNEVLDAASSSDNSQIAAGGADRACTVFD 86 799*****888*****************9**998877 PP == domain 3 score: 15.7 bits; conditional E-value: 0.00015 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSE CS WD40 1 gqclrtltGH.ssvtslafspdgawlasGsdDgt 33 g++lr +++H v+++af+ +++ ++sGs+D+t tr|Q19986|Q19986_CAEEL 90 GKQLRRWRTHgAQVNAVAFNEESSVVFSGSMDCT 123 5789999***666*******************99 PP == domain 4 score: 4.4 bits; conditional E-value: 0.58 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 +++++ +++ s+ + +g+ +++Gs Dg+ r++ tr|Q19986|Q19986_CAEEL 136 PIQIFNEStDGILSI--DVNGHEIVAGSADGNYRVY 169 556665554457777..778888999*****97776 PP == domain 5 score: 11.6 bits; conditional E-value: 0.003 SEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 12 svtslafspdgawlasGsdDgtvriWd 38 sv+s++f pd++ l++G + g vr+ d tr|Q19986|Q19986_CAEEL 184 SVNSVSFTPDSNCLLAGVMGGIVRLID 210 6****************88**999865 PP == domain 6 score: 13.2 bits; conditional E-value: 0.00095 TEEEEEEESS.SS.......E.EEEEEETTSSEEEEEETTSEEEEE CS WD40 1 gqclrtltGH.ss.......v.tslafspdgawlasGsdDgtvriW 37 g++l +++GH + v s+ +asGs+Dg v+++ tr|Q19986|Q19986_CAEEL 214 GKLLASYKGHqNTeykldcrVlQSI------EHVASGSEDGFVYVY 253 68899*****86689*999966999......99**********998 PP == domain 7 score: 1.7 bits; conditional E-value: 4.1 S.SS.EEEEEEETTSSEEEEEETTSEEEEE CS WD40 10 H.ss.vtslafspdgawlasGsdDgtvriW 37 H s ++sl +p + l+++ + +++W tr|Q19986|Q19986_CAEEL 266 HpSKvIHSLTAHPKKERLMTAA-GQMIYLW 294 7555568888888888888887.8888888 PP >> sp|P90917|RBA1_CAEEL Probable histone-binding protein rba-1 OS=Caenorhabditis elegans OX=6239 GN=rba-1 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.0 0.1 0.041 6.2 16 38 .] 179 200 .. 161 200 .. 0.60 2 ! 16.0 0.2 0.00012 0.019 3 38 .] 213 250 .. 211 250 .. 0.86 3 ! 26.5 0.0 6.2e-08 9.3e-06 4 38 .] 257 293 .. 254 293 .. 0.84 4 ! 20.3 0.1 5.3e-06 0.0008 2 38 .] 299 337 .. 298 337 .. 0.83 5 ? 8.7 0.1 0.024 3.7 8 31 .. 364 387 .. 358 389 .. 0.79 Alignments for each domain: == domain 1 score: 8.0 bits; conditional E-value: 0.041 EEEETTSSEEEEEETTSEEEEEE CS WD40 16 lafspdgawlasGsdDgtvriWd 38 ++ ++g++l++ +dDg + Wd sp|P90917|RBA1_CAEEL 179 WSNTREGHLLTA-GDDGMICHWD 200 345667777765.55*******9 PP == domain 2 score: 16.0 bits; conditional E-value: 0.00012 EEEEEESS.SSEEEEEEETTSSEEEEE..ETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasG..sdDgtvriWd 38 ++ +++GH s+ +++f+ +++++ G +dD+++ +Wd sp|P90917|RBA1_CAEEL 213 PQSKFKGHsSNAEDVSFHALHNFVF-GsvGDDRKLNLWD 250 6889****6669************9.52468*******9 PP == domain 3 score: 26.5 bits; conditional E-value: 6.2e-08 EEEEESS.SSEEEEEEETTSSEE.EEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawl.asGsdDgtvriWd 38 + t GH v+++ f+p + ++ a+Gs D+tv +Wd sp|P90917|RBA1_CAEEL 257 QLTAVGHtAEVNCITFNPFSEYIlATGSVDKTVALWD 293 55556**777************6379**********9 PP == domain 4 score: 20.3 bits; conditional E-value: 5.3e-06 EEEEEEESSSS.EEEEEEETTSSEEE..EEETTSEEEEEE CS WD40 2 qclrtltGHss.vtslafspdgawla..sGsdDgtvriWd 38 ++++tl+ H++ + ++fsp+ ++ sGs D v +Wd sp|P90917|RBA1_CAEEL 299 KKMYTLKHHNDeIFQVSFSPHYETVLasSGS-DDRVIVWD 337 67899**99666************7533556.*******9 PP == domain 5 score: 8.7 bits; conditional E-value: 0.024 ESS.SSEEEEEEETTSSEEEEEETT CS WD40 8 tGH.ssvtslafspdgawlasGsdD 31 GH + v +++++p+ +w +++s D sp|P90917|RBA1_CAEEL 364 AGHtGKVADFSWNPNRPWTICSS-D 387 599666************66667.5 PP >> sp|Q965S8|EIF3I_CAEEL Eukaryotic translation initiation factor 3 subunit I OS=Caenorhabditis elegans OX=6239 GN=eif- # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.3 0.0 0.016 2.4 6 37 .. 5 37 .. 3 37 .. 0.89 2 ! 20.4 2.4 5e-06 0.00075 2 38 .] 43 80 .. 42 80 .. 0.86 3 ! 11.8 0.0 0.0026 0.39 9 33 .. 188 213 .. 180 216 .. 0.82 4 ? 2.1 0.0 3.1 4.7e+02 11 31 .. 232 253 .. 221 254 .. 0.68 5 ! 28.8 0.0 1.1e-08 1.7e-06 5 36 .. 281 313 .. 277 313 .. 0.92 Alignments for each domain: == domain 1 score: 9.3 bits; conditional E-value: 0.016 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 6 tltGH.ssvtslafspdgawlasGsdDgtvriW 37 +l+GH t ++f+++g++ +s+ +D++ +W sp|Q965S8|EIF3I_CAEEL 5 SLKGHeRALTRVRFNREGDLTFSCAKDKKPCVW 37 689**666************889**9*998888 PP == domain 2 score: 20.4 bits; conditional E-value: 5e-06 EEEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 + +++++GH++ v+++++s d + +++s D tv+iWd sp|Q965S8|EIF3I_CAEEL 43 ERIGSYDGHNGaVWDIDVSWDTTKCVTASGDLTVKIWD 80 56889****555*****9999999888877*******9 PP == domain 3 score: 11.8 bits; conditional E-value: 0.0026 SS.SSEEEEEEETTSSEEEEEETTSE CS WD40 9 GH.ssvtslafspdgawlasGsdDgt 33 H sv +l+ sp g++l+s+s+D+t sp|Q965S8|EIF3I_CAEEL 188 VHrYSVQDLQLSPRGDFLISASRDKT 213 5755699*****************98 PP == domain 4 score: 2.1 bits; conditional E-value: 3.1 SSEEEEEEETTSSEEE.EEETT CS WD40 11 ssvtslafspdgawla.sGsdD 31 +v+s + sp+ + ++ G++D sp|Q965S8|EIF3I_CAEEL 232 RPVNSACISPNRDHIClGGGED 253 35999*******9985345655 PP == domain 5 score: 28.8 bits; conditional E-value: 1.1e-08 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvri 36 ++GH ++++ +a++p+g+ +a+G++Dg +ri sp|Q965S8|EIF3I_CAEEL 281 ARFKGHfGPINTMAWHPSGTIIATGGEDGYIRI 313 5699**888***********************8 PP >> sp|Q19124|A16L1_CAEEL Autophagic-related protein 16.1 OS=Caenorhabditis elegans OX=6239 GN=atg-16.1 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.3 0.0 0.00044 0.066 13 38 .] 295 319 .. 286 319 .. 0.72 2 ! 13.0 0.1 0.0011 0.16 7 38 .] 332 364 .. 321 364 .. 0.77 3 ! 29.3 0.5 7.6e-09 1.1e-06 3 38 .] 370 405 .. 368 405 .. 0.88 4 ? 4.6 0.0 0.49 73 23 38 .] 433 448 .. 410 448 .. 0.82 5 ? 0.6 0.1 9.4 1.4e+03 13 36 .. 464 487 .. 453 489 .. 0.74 6 ! 10.2 0.1 0.0083 1.3 12 38 .] 509 535 .. 493 535 .. 0.75 7 ? 6.0 0.0 0.18 27 11 38 .] 551 578 .] 540 578 .] 0.85 Alignments for each domain: == domain 1 score: 14.3 bits; conditional E-value: 0.00044 EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriWd 38 v+++ + + ++ a+G+ D++++iW+ sp|Q19124|A16L1_CAEEL 295 VNDVHWLDGETF-ATGGSDRNIKIWK 319 777755555555.88977*******6 PP == domain 2 score: 13.0 bits; conditional E-value: 0.0011 EESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 7 ltGHss.vtslafspdgawlasGsdDgtvriWd 38 l G + t +++ +d + ++++s D++vriW+ sp|Q19124|A16L1_CAEEL 332 LAGSNAaFTRIDYERDRKHFIASSNDKNVRIWN 364 4455333578889999999999999*******8 PP == domain 3 score: 29.3 bits; conditional E-value: 7.6e-09 EEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 +l tl+GHs+ vt+++f ++++ + sGs D+ ++iWd sp|Q19124|A16L1_CAEEL 370 LLSTLSGHSDqVTCVKFYQSHSAV-SGSADRVIKIWD 405 7899****556****999999996.8**********9 PP == domain 4 score: 4.6 bits; conditional E-value: 0.49 SEEEEEETTSEEEEEE CS WD40 23 awlasGsdDgtvriWd 38 +++asG+ D+++r++d sp|Q19124|A16L1_CAEEL 433 SLFASGHFDKKLRFYD 448 5589**99******98 PP == domain 5 score: 0.6 bits; conditional E-value: 9.4 EEEEEEETTSSEEEEEETTSEEEE CS WD40 13 vtslafspdgawlasGsdDgtvri 36 +tsl++ +g l+ +++D t+ + sp|Q19124|A16L1_CAEEL 464 ITSLDVTMSGCELLVSTRDDTISL 487 899987777777777888999987 PP == domain 6 score: 10.2 bits; conditional E-value: 0.0083 SEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 12 svtslafspdgawlasGsdDgtvriWd 38 + + + s+ + ++a+Gs +g++ +W+ sp|Q19124|A16L1_CAEEL 509 DLSRVVLSSGNEYVAAGSSNGSIFVWN 535 36677789999******99*******8 PP == domain 7 score: 6.0 bits; conditional E-value: 0.18 SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 11 ssvtslafspdgawlasGsdDgtvriWd 38 + + sl+++p g l+s+s+ + v +W+ sp|Q19124|A16L1_CAEEL 551 NAIFSLSWNPTGYGLLSSSKQKFVTLWK 578 4599*******************99995 PP >> sp|Q09589|HIRA_CAEEL Protein HIRA OS=Caenorhabditis elegans OX=6239 GN=hira-1 PE=3 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 11.3 0.3 0.0037 0.55 6 38 .] 10 49 .. 6 49 .. 0.83 2 ! 13.6 0.3 0.00069 0.1 14 37 .. 78 101 .. 69 102 .. 0.90 3 ! 21.4 0.0 2.4e-06 0.00037 6 38 .] 128 161 .. 123 161 .. 0.89 4 ? 8.2 0.0 0.035 5.3 13 37 .. 179 203 .. 173 203 .. 0.87 5 ? 7.0 0.0 0.089 13 2 27 .. 209 241 .. 208 255 .. 0.68 6 ? 7.0 0.0 0.086 13 8 37 .. 267 310 .. 260 311 .. 0.68 7 ? 6.1 0.0 0.17 26 13 36 .. 330 351 .. 319 352 .. 0.74 Alignments for each domain: == domain 1 score: 11.3 bits; conditional E-value: 0.0037 EEESS..SSEEEEEEETTSSEEEEEET.....TSEEEEEE CS WD40 6 tltGH..ssvtslafspdgawlasGsd.....DgtvriWd 38 t+ GH +s+ +++ +p+g+ +++++ +g v +W+ sp|Q09589|HIRA_CAEEL 10 TFVGHdtGSILAIDCHPSGKKFITCGQkartsNGLVVVWN 49 688**8555*************9997445666*******8 PP == domain 2 score: 13.6 bits; conditional E-value: 0.00069 EEEEEETTSSEEEEEETTSEEEEE CS WD40 14 tslafspdgawlasGsdDgtvriW 37 +s+++spdg+ +a GsdD +v +W sp|Q09589|HIRA_CAEEL 78 NSCRWSPDGKRFAFGSDDSSVSVW 101 5788********99********** PP == domain 3 score: 21.4 bits; conditional E-value: 2.4e-06 EEESSSS..EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 6 tltGHss..vtslafspdgawlasGsdDgtvriWd 38 +l+GH s v + +sp+g++lasGs D + i++ sp|Q09589|HIRA_CAEEL 128 VLRGH-SmeVLTVEWSPNGKYLASGSIDYRIIIYN 161 789**.556**********************9997 PP == domain 4 score: 8.2 bits; conditional E-value: 0.035 EEEEEEETTSSEEEEE..ETTSEEEEE CS WD40 13 vtslafspdgawlasG..sdDgtvriW 37 v +l+++p g++la + + D+++r+W sp|Q09589|HIRA_CAEEL 179 VKGLSWDPIGKYLA-SleG-DKKLRFW 203 889*********97.6577.******* PP == domain 5 score: 7.0 bits; conditional E-value: 0.089 EEEEEEESS.SS......EEEEEEETTSSEEEE CS WD40 2 qclrtltGH.ss......vtslafspdgawlas 27 qc+++ t s t l++spdg++l++ sp|Q09589|HIRA_CAEEL 209 QCVKSVTEPfESnieetmLTRLDWSPDGKYLMT 241 677776655422456666799*********986 PP == domain 6 score: 7.0 bits; conditional E-value: 0.086 ESS.SSEEEEE........EETTSSE.....EEEEETTSEEEEE CS WD40 8 tGH.ssvtsla........fspdgaw.....lasGsdDgtvriW 37 GH ++ t+++ + ++g+ a Gs+D+++ iW sp|Q09589|HIRA_CAEEL 267 AGHhKGTTCVRamprlieaNLKNGKRmqltcAAVGSRDKSISIW 310 577666666666666666666666665644445699******** PP == domain 7 score: 6.1 bits; conditional E-value: 0.17 EEEEEEETTSSE....EEEEETTSEEEE CS WD40 13 vtslafspdgaw....lasGsdDgtvri 36 v ++ aw l+++s Dgtv++ sp|Q09589|HIRA_CAEEL 330 VMDF------AWcgrnLLACSQDGTVKV 351 5555......444444778*******98 PP >> sp|Q09406|A16L2_CAEEL Autophagic-related protein 16.2 OS=Caenorhabditis elegans OX=6239 GN=atg-16.2 PE=3 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.7 0.1 7.2e-05 0.011 6 37 .. 240 271 .. 236 272 .. 0.88 2 ! 15.6 0.2 0.00017 0.025 3 38 .] 282 318 .. 280 318 .. 0.84 3 ! 18.5 0.2 2e-05 0.003 2 38 .] 323 359 .. 322 359 .. 0.87 4 ? 8.2 0.2 0.035 5.2 22 38 .] 387 402 .. 361 402 .. 0.64 5 ? 4.5 0.0 0.54 81 12 36 .. 417 441 .. 407 443 .. 0.83 6 ! 10.5 0.1 0.007 1.1 17 38 .] 463 489 .. 451 489 .. 0.85 7 ! 10.2 0.0 0.0083 1.3 12 37 .. 506 533 .. 495 534 .] 0.84 Alignments for each domain: == domain 1 score: 16.7 bits; conditional E-value: 7.2e-05 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 6 tltGH.ssvtslafspdgawlasGsdDgtvriW 37 +l++H + v+++ + +d ++ ++Gs D +v iW sp|Q09406|A16L2_CAEEL 240 KLSTHdGEVHDVEWMSDDTFATAGS-DSKVQIW 271 5889*666************99999.******* PP == domain 2 score: 15.6 bits; conditional E-value: 0.00017 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++ tl+G ++v+ l++++ + +++s D+t+r+W+ sp|Q09406|A16L2_CAEEL 282 KVSTLSGClGPVNRLDYDSQRHVCLASSNDKTCRLWN 318 57899999999****87777777667888*******8 PP == domain 3 score: 18.5 bits; conditional E-value: 2e-05 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++l t++GH + v+s + ++++ + sGs D+t++ Wd sp|Q09406|A16L2_CAEEL 323 RLLSTFSGHtDKVSSARLFQSHNVI-SGSADRTIKNWD 359 5789*****555****988888886.8**********9 PP == domain 4 score: 8.2 bits; conditional E-value: 0.035 SSEEEEEETTSEEEEEE CS WD40 22 gawlasGsdDgtvriWd 38 ++ ++s++ D++vr+Wd sp|Q09406|A16L2_CAEEL 387 SS-FISSHFDKKVRFWD 402 34.457999*******9 PP == domain 5 score: 4.5 bits; conditional E-value: 0.54 SEEEEEEETTSSEEEEEETTSEEEE CS WD40 12 svtslafspdgawlasGsdDgtvri 36 v+sl+ s dg ++++s+D t+ + sp|Q09406|A16L2_CAEEL 417 KVSSLDISMDGLQVLASSRDDTLSL 441 4999**********999*9**9977 PP == domain 6 score: 10.5 bits; conditional E-value: 0.007 E.....EETTSSEEEEEETTSEEEEEE CS WD40 17 a.....fspdgawlasGsdDgtvriWd 38 + fs+ g ++++Gs + +v iW+ sp|Q09406|A16L2_CAEEL 463 DstraiFSSTGEYVLAGSSNSSVFIWN 489 4555559**********99*******8 PP == domain 7 score: 10.2 bits; conditional E-value: 0.0083 S..EEEEEEETTSSEEEEEETTSEEEEE CS WD40 12 s..vtslafspdgawlasGsdDgtvriW 37 s + sla++p+g+ l+++++ +t+ +W sp|Q09406|A16L2_CAEEL 506 SaqIMSLAWNPSGRGLLACDRQKTCTLW 533 14599*********************** PP >> tr|G5EF68|G5EF68_CAEEL TAF (TBP-associated transcription factor) family OS=Caenorhabditis elegans OX=6239 GN=taf-5 P # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.9 0.1 7.1 1.1e+03 13 34 .. 322 343 .. 310 345 .. 0.81 2 ! 30.1 0.1 4.3e-09 6.5e-07 7 38 .] 390 422 .. 383 422 .. 0.86 3 ? 3.2 0.0 1.4 2e+02 13 37 .. 438 462 .. 429 463 .. 0.83 4 ! 25.1 0.1 1.6e-07 2.4e-05 4 38 .] 470 505 .. 467 505 .. 0.84 5 ! 14.3 0.0 0.00042 0.063 3 27 .. 511 536 .. 509 547 .. 0.76 Alignments for each domain: == domain 1 score: 0.9 bits; conditional E-value: 7.1 EEEEEEETTSSEEEEE.ETTSEE CS WD40 13 vtslafspdgawlasG.sdDgtv 34 v s++f +d++++a G s D ++ tr|G5EF68|G5EF68_CAEEL 322 VASCDFTDDSSLIAMGlS-DSSI 343 67999*******999977.9887 PP == domain 2 score: 30.1 bits; conditional E-value: 4.3e-09 EESS.SSEEEEEEETTSSEEEEE.ETTSEEEEEE CS WD40 7 ltGH.ssvtslafspdgawlasG.sdDgtvriWd 38 +tGH ++v s+ fspd ++l+s+ + D+tvr+W+ tr|G5EF68|G5EF68_CAEEL 390 YTGHgGPVFSVNFSPDRRLLISSaG-DRTVRLWS 422 89**888*************97736.*******5 PP == domain 3 score: 3.2 bits; conditional E-value: 1.4 EEEEEEETTSSEEEEEETTSEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriW 37 v+ +f++ g ++a++s D+t +W tr|G5EF68|G5EF68_CAEEL 438 VWQAQFCSRGYYFATASADKTAAMW 462 466668999999*********9999 PP == domain 4 score: 25.1 bits; conditional E-value: 1.6e-07 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 lr++ ++v +++++p+ +++a GsdD+ vr+Wd tr|G5EF68|G5EF68_CAEEL 470 LRIFADPyGDVGCIDYHPNCNYIAGGSDDRYVRVWD 505 55665445679************9889********9 PP == domain 5 score: 14.3 bits; conditional E-value: 0.00042 EEEEEESS.SSEEEEEEETTSSEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlas 27 +r+++GH s+ +++fsp g++++s tr|G5EF68|G5EF68_CAEEL 511 RVRIFSGHkASIIAVKFSPCGRYIVS 536 689*****87788**********986 PP >> tr|Q9N477|Q9N477_CAEEL Uncharacterized protein OS=Caenorhabditis elegans OX=6239 GN=CELE_Y23H5B.5 PE=1 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.4 0.0 9.5e-05 0.014 11 38 .] 83 110 .. 73 110 .. 0.90 2 ? 8.3 0.0 0.033 4.9 9 37 .. 127 156 .. 120 157 .. 0.78 3 ! 16.6 0.1 7.7e-05 0.012 6 38 .] 172 206 .. 168 206 .. 0.66 4 ! 10.0 0.0 0.0098 1.5 10 38 .] 220 246 .. 210 246 .. 0.91 5 ? 7.7 0.0 0.053 8 2 34 .. 251 284 .. 250 286 .. 0.88 Alignments for each domain: == domain 1 score: 16.4 bits; conditional E-value: 9.5e-05 SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 11 ssvtslafspdgawlasGsdDgtvriWd 38 ++v+s++f +dg++la G+d g+vri+d tr|Q9N477|Q9N477_CAEEL 83 KGVCSIDFRHDGRLLAIGGDEGKVRIFD 110 569***********************98 PP == domain 2 score: 8.3 bits; conditional E-value: 0.033 SS.SSEEEEEEETTSSEEEEE.ETTSEEEEE CS WD40 9 GH.ssvtslafspdgawlasG.sdDgtvriW 37 + s v s+ fsp g+ ++ + dDg+++ + tr|Q9N477|Q9N477_CAEEL 127 ASqSTVKSVHFSPRGDTVF-SmADDGKIKQY 156 4545699***********9.5357****976 PP == domain 3 score: 16.6 bits; conditional E-value: 7.7e-05 EEESS.SSEEEEEEET.TSSEEEEEETTSEEEEEE CS WD40 6 tltGH.ssvtslafsp.dgawlasGsdDgtvriWd 38 ++ +H + +++ a+s+ + + +++G++D++vr+Wd tr|Q9N477|Q9N477_CAEEL 172 EIQAHeDAIRCGAVSSiNDHIVLTGGYDHKVRLWD 206 56788655644443440555567***********9 PP == domain 4 score: 10.0 bits; conditional E-value: 0.0098 SSSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 10 HssvtslafspdgawlasGsdDgtvriWd 38 H +v s+ f p +++a++ + v+iWd tr|Q9N477|Q9N477_CAEEL 220 H-PVESVLFLPGEQLIATAA-GPIVKIWD 246 7.8***************99.*******9 PP == domain 5 score: 7.7 bits; conditional E-value: 0.053 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtv 34 ++l+ l +H + vtsl+ +++ l+s++ D+ v tr|Q9N477|Q9N477_CAEEL 251 RQLTALQAHyKTVTSLRLATNSTCLLSAGIDRRV 284 5677899**999***************9999877 PP >> sp|Q9XWH0|BUB3_CAEEL Mitotic checkpoint protein bub-3 OS=Caenorhabditis elegans OX=6239 GN=bub-3 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.3 0.0 0.016 2.5 22 37 .. 37 52 .. 26 53 .. 0.87 2 ? 2.2 0.0 2.8 4.2e+02 10 36 .. 68 94 .. 61 96 .. 0.70 3 ! 25.6 0.1 1.2e-07 1.8e-05 7 38 .] 105 137 .. 100 137 .. 0.87 4 ? 1.5 0.0 4.7 7.1e+02 22 38 .] 164 178 .. 142 178 .. 0.70 5 ! 20.2 0.1 5.7e-06 0.00085 10 38 .] 252 279 .. 234 279 .. 0.85 6 ? 3.7 0.0 0.93 1.4e+02 5 28 .. 290 311 .. 284 322 .. 0.75 Alignments for each domain: == domain 1 score: 9.3 bits; conditional E-value: 0.016 SSEEEEEETTSEEEEE CS WD40 22 gawlasGsdDgtvriW 37 +++la++++Dgt+r++ sp|Q9XWH0|BUB3_CAEEL 37 SRLLAASGWDGTCRVY 52 5679999*******98 PP == domain 2 score: 2.2 bits; conditional E-value: 2.8 S.SSEEEEEEETTSSEEEEEETTSEEEE CS WD40 10 H.ssvtslafspdgawlasGsdDgtvri 36 H ++ + f +++ + G+ D++v++ sp|Q9XWH0|BUB3_CAEEL 68 HgKPLLTCTFAGYNKVAF-GGVDHNVKL 94 766655555666777766.999****98 PP == domain 3 score: 25.6 bits; conditional E-value: 1.2e-07 EESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 7 ltGH.ssvtslafspdgawlasGsdDgtvriWd 38 l H v+++ f+p +++++sG++D +v++Wd sp|Q9XWH0|BUB3_CAEEL 105 LGSHaLAVRCMEFNPMSSLIVSGGWDSSVKLWD 137 5567445*************************9 PP == domain 4 score: 1.5 bits; conditional E-value: 4.7 SSEEEEEETTSEEEEEE CS WD40 22 gawlasGsdDgtvriWd 38 ++ G++D+++ ++d sp|Q9XWH0|BUB3_CAEEL 164 T--ILVGTKDRKIFMYD 178 2..345*******9998 PP == domain 5 score: 20.2 bits; conditional E-value: 5.7e-06 SSSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 10 HssvtslafspdgawlasGsdDgtvriWd 38 H +v+ +af+p +a+G+ Dg v iWd sp|Q9XWH0|BUB3_CAEEL 252 H-PVHTVAFHPKYGTFATGGADGIVNIWD 279 5.69************************9 PP == domain 6 score: 3.7 bits; conditional E-value: 0.93 EEEESSSSEEEEEEETTSSEEEEE CS WD40 5 rtltGHssvtslafspdgawlasG 28 +++++ s++sl+f+ dg+ la + sp|Q9XWH0|BUB3_CAEEL 290 HKFET--SISSLSFNEDGSQLAIA 311 33333..4***********98743 PP >> tr|Q22059|Q22059_CAEEL CDT (S. pombe CDC10 Dependent Transcript) homolog OS=Caenorhabditis elegans OX=6239 GN=cdt-2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.3 0.0 0.016 2.5 3 38 .] 85 122 .. 83 122 .. 0.77 2 ! 25.6 0.1 1.2e-07 1.7e-05 5 38 .] 133 168 .. 129 168 .. 0.89 3 ? 6.3 0.0 0.15 22 13 38 .] 218 244 .. 196 244 .. 0.76 4 ? 5.7 0.0 0.22 33 6 34 .. 262 293 .. 254 294 .. 0.71 5 ! 10.5 0.1 0.0066 1 11 38 .] 316 343 .. 304 343 .. 0.72 6 ! 13.6 0.2 0.00071 0.11 6 38 .] 371 403 .. 367 403 .. 0.92 Alignments for each domain: == domain 1 score: 9.3 bits; conditional E-value: 0.016 EEEEEESS.SSEEEEE..EETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtsla..fspdgawlasGsdDgtvriWd 38 +l+ + +H + + ++ +++++ ++ ++ D t+r Wd tr|Q22059|Q22059_CAEEL 85 QLYFFPAHdGAIMDVVgvPQKESQIVSISG-DSTIRCWD 122 567789995557777766788888888889.*******9 PP == domain 2 score: 25.6 bits; conditional E-value: 1.2e-07 EEEESS.SSEEEEEEETTSSEE.EEEETTSEEEEEE CS WD40 5 rtltGH.ssvtslafspdgawl.asGsdDgtvriWd 38 +++ GH +sv+s++f pd + + ++G++D v+iWd tr|Q22059|Q22059_CAEEL 133 QVFFGHeGSVRSICFAPDDPNVfVTGGRDFQVKIWD 168 5677**999************746***********9 PP == domain 3 score: 6.3 bits; conditional E-value: 0.15 EEEEEEETTSSEEEEEET..TSEEEEEE CS WD40 13 vtslafspdgawlasGsd..DgtvriWd 38 vts+ f ++++ as+s+ D +r+Wd tr|Q22059|Q22059_CAEEL 218 VTSVLFLDEHHV-ASASEnaDSGIRVWD 244 888866666666.7887455*******9 PP == domain 4 score: 5.7 bits; conditional E-value: 0.22 EEESS.SS..EEEEEEETTSSEEEEEETTSEE CS WD40 6 tltGH.ss..vtslafspdgawlasGsdDgtv 34 + t +s vt+l ++ g+ l++++ D ++ tr|Q22059|Q22059_CAEEL 262 VPTSNkKSygVTCLTLDRFGNRLFASCTDSSI 293 4445554478************9765559987 PP == domain 5 score: 10.5 bits; conditional E-value: 0.0066 SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 11 ssvtslafspdgawlasGsdDgtvriWd 38 ++ t +a sp ++ +a+Gs+D +Wd tr|Q22059|Q22059_CAEEL 316 NFYTQVACSPVSDVIACGSEDSRAVVWD 343 33366777777777*************9 PP == domain 6 score: 13.6 bits; conditional E-value: 0.00071 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 6 tltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +++GH + v + +s+ g++++s++ g vriW+ tr|Q22059|Q22059_CAEEL 371 SCDGHlKQVLNVGWSSRGTYFMSCD-EGGVRIWS 403 688*******************988.*******5 PP >> sp|Q20059|WDR48_CAEEL WD repeat-containing protein 48 homolog OS=Caenorhabditis elegans OX=6239 GN=wdr-48 PE=1 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.3 0.0 0.29 44 11 37 .. 30 56 .. 18 57 .. 0.73 2 ! 19.0 0.3 1.4e-05 0.0021 2 38 .] 81 118 .. 80 118 .. 0.92 3 ? 6.8 0.0 0.1 15 7 38 .] 131 163 .. 126 163 .. 0.75 4 ? 5.6 0.0 0.24 36 4 38 .] 171 206 .. 168 206 .. 0.81 5 ! 23.3 0.0 6.3e-07 9.5e-05 3 38 .] 212 248 .. 210 248 .. 0.84 6 ? 6.3 0.0 0.15 22 2 34 .. 253 286 .. 252 287 .. 0.89 Alignments for each domain: == domain 1 score: 5.3 bits; conditional E-value: 0.29 SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 11 ssvtslafspdgawlasGsdDgtvriW 37 s v++l+++ + l++G+ D +r W sp|Q20059|WDR48_CAEEL 30 SAVSALQYDAQNGRLFTGGSDTIIRTW 56 34888887777777788977*****99 PP == domain 2 score: 19.0 bits; conditional E-value: 1.4e-05 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 q +++l+ H ++v+++ + +g+ l+s+s D tv++W+ sp|Q20059|WDR48_CAEEL 81 QYQGSLEQHtDWVNDMILCGHGKILISASNDTTVKVWN 118 568999***777*************************8 PP == domain 3 score: 6.8 bits; conditional E-value: 0.1 EESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 7 ltGHss.vtslafspdgawlasGsdDgtvriWd 38 +++H++ v++la+ p +s+s D+++ ++d sp|Q20059|WDR48_CAEEL 131 IRTHKDyVSCLAYAPIVEKAVSASFDHNIFVYD 163 4679556****55555555778888*****998 PP == domain 4 score: 5.6 bits; conditional E-value: 0.24 EEEEESS.SSEEEEEEETTSSEEE.EEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawla.sGsdDgtvriWd 38 + l G +s++sla+ p+ ++++ +G+ + +r++d sp|Q20059|WDR48_CAEEL 171 VNNLIGCkDSIYSLATTPNLSLVLgAGT-EKCIRLFD 206 5567788566*************94555.*****998 PP == domain 5 score: 23.3 bits; conditional E-value: 6.3e-07 EEEEEESS.SSEEEEEEETTSSEEE.EEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawla.sGsdDgtvriWd 38 ++ +l+GH ++v++l +++dg+ + +Gs D t+r+Wd sp|Q20059|WDR48_CAEEL 212 KIMKLRGHtDNVRALVVNDDGTRALsAGS-DATIRLWD 248 57789***766************651667.*******9 PP == domain 6 score: 6.3 bits; conditional E-value: 0.15 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtv 34 +c+ t+ +H +v+ l+++++ + + s+++D+ v sp|Q20059|WDR48_CAEEL 253 RCIATCIAHeEGVWTLQVDSSFTTVYSAGKDKMV 286 799******888****999999999999*99977 PP >> sp|P90794|DCA11_CAEEL DDB1- and CUL4-associated factor 11 homolog OS=Caenorhabditis elegans OX=6239 GN=wdr-23 PE=3 S # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 10.7 0.1 0.0059 0.89 9 38 .] 267 296 .. 261 296 .. 0.89 2 ! 20.2 0.2 5.9e-06 0.00089 6 38 .] 306 340 .. 301 340 .. 0.86 3 ! 25.0 0.1 1.8e-07 2.7e-05 2 38 .] 350 387 .. 349 387 .. 0.95 4 ? 1.5 0.0 4.6 6.9e+02 4 23 .. 430 452 .. 428 470 .. 0.67 5 ! 13.0 0.4 0.0011 0.17 4 37 .. 477 511 .. 474 512 .. 0.87 Alignments for each domain: == domain 1 score: 10.7 bits; conditional E-value: 0.0059 SSSSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 9 GHssvtslafspdgawlasGsdDgtvriWd 38 H+ v +++fs+++ +++G+ +++++d sp|P90794|DCA11_CAEEL 267 DHCAVFCVKFSDSSEQIVCGTSQYSIHVFD 296 5878****************66****9998 PP == domain 2 score: 20.2 bits; conditional E-value: 5.9e-06 EEESS.SSEEEEEEETTSSEEE.EEETTSEEEEEE CS WD40 6 tltGH.ssvtslafspdgawla.sGsdDgtvriWd 38 + +H ++v+s++f + g+ l+ s++dDg v++Wd sp|P90794|DCA11_CAEEL 306 IVNAHeDDVNSVCFADLGSNLIySAGDDGLVKVWD 340 4579*999*****99999998779999*******9 PP == domain 3 score: 25.0 bits; conditional E-value: 1.8e-07 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++++++ GH ++vt+++ +d ++l+s s+D+t+++Wd sp|P90794|DCA11_CAEEL 350 EPVGVFAGHrDGVTHVDSRQDERYLLSNSKDQTIKVWD 387 58999****999**************98*********9 PP == domain 4 score: 1.5 bits; conditional E-value: 4.6 EEEEESSSSE.EEEE...EETTSS CS WD40 4 lrtltGHssv.tsla...fspdga 23 + tl+GH sv + l fsp+++ sp|P90794|DCA11_CAEEL 430 VMTLRGH-SVlHTLVranFSPEST 452 6799***.7656665666777765 PP == domain 5 score: 13.0 bits; conditional E-value: 0.0011 EEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEE CS WD40 4 lrtltGHss.vtslafspdgawlasGsdDgtvriW 37 r l+GH+ v+ ++++p + ++s+ +Dg +W sp|P90794|DCA11_CAEEL 477 SRRLKGHTAvVRECDWHPTENEIVSSAWDGVTTVW 511 57799**7757*******************99888 PP >> tr|Q9NEW7|Q9NEW7_CAEEL ELongator complex Protein Component OS=Caenorhabditis elegans OX=6239 GN=elpc-2 PE=1 SV=3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.0 0.0 1.6 2.4e+02 25 38 .] 79 92 .. 54 92 .. 0.69 2 ! 18.9 0.4 1.6e-05 0.0023 5 37 .. 201 236 .. 197 236 .. 0.80 3 ! 17.4 3.4 4.4e-05 0.0066 7 38 .] 283 315 .. 276 315 .. 0.87 4 ? 4.9 0.1 0.4 60 8 36 .. 390 423 .. 380 424 .. 0.72 5 ? 8.8 0.1 0.023 3.5 3 33 .. 553 584 .. 551 594 .. 0.76 6 ! 15.9 0.0 0.00013 0.02 6 37 .. 603 635 .. 598 636 .. 0.86 7 ? 8.3 2.8 0.033 4.9 7 37 .. 654 684 .. 647 684 .. 0.79 8 ? 5.2 0.0 0.32 49 13 38 .] 750 775 .. 738 775 .. 0.88 Alignments for each domain: == domain 1 score: 3.0 bits; conditional E-value: 1.6 EEEEETTSEEEEEE CS WD40 25 lasGsdDgtvriWd 38 +++G+ D v +W+ tr|Q9NEW7|Q9NEW7_CAEEL 79 FVTGGVDSRVVLWK 92 569**********6 PP == domain 2 score: 18.9 bits; conditional E-value: 1.6e-05 EEEESS.SSEEEEEEETTSSEE..EEEETTSEEEEE CS WD40 5 rtltGH.ssvtslafspdgawl..asGsdDgtvriW 37 + GH ++++s+af+++ + l as++ D vr+W tr|Q9NEW7|Q9NEW7_CAEEL 201 ISVAGHtDWIHSIAFNDNPDHLlvASAGQDTYVRLW 236 5667**777*****999999962267799******* PP == domain 3 score: 17.4 bits; conditional E-value: 4.4e-05 EESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 7 ltGH.ssvtslafspdgawlasGsdDgtvriWd 38 GH ++v+s +s dg+ l+++s D+t+ iW+ tr|Q9NEW7|Q9NEW7_CAEEL 283 MQGHdDWVHSTVWSNDGRVLLTASSDKTCIIWK 315 67**777*9999********99977*******6 PP == domain 4 score: 4.9 bits; conditional E-value: 0.4 ESS.SSEEEEEEETTSSE....EEEEETTSEEEE CS WD40 8 tGH.ssvtslafspdgaw....lasGsdDgtvri 36 GH + v++++++++ + l+s + D+t r+ tr|Q9NEW7|Q9NEW7_CAEEL 390 GGHvGEVRDVDWHRSDDGdsgfLMSVGQDQTTRV 423 59*888****844444434455888788998887 PP == domain 5 score: 8.8 bits; conditional E-value: 0.023 EEEEEESSSS.EEEEEEETTSSEEEEEETTSE CS WD40 3 clrtltGHss.vtslafspdgawlasGsdDgt 33 +++l GH+ v+++ +p g+ la++++ + tr|Q9NEW7|Q9NEW7_CAEEL 553 EQHKLYGHGYeVYAVTANPTGNVLATACKSSH 584 5899****446**************9875333 PP == domain 6 score: 15.9 bits; conditional E-value: 0.00013 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 6 tltGH.ssvtslafspdgawlasGsdDgtvriW 37 ++ GH vt +a++p+g+ l++ s+D+t +++ tr|Q9NEW7|Q9NEW7_CAEEL 603 EIIGHqLTVTQIAWNPSGTRLLTVSRDRTAKLY 635 5679*655**********************997 PP == domain 7 score: 8.3 bits; conditional E-value: 0.033 EESSSS.EEEEEEETTSSEEEEEETTSEEEEE CS WD40 7 ltGHss.vtslafspdgawlasGsdDgtvriW 37 + H+ ++++++ +d +++ ++s+D++v +W tr|Q9NEW7|Q9NEW7_CAEEL 654 GKQHTRiIWACDWIDDEHFV-TASRDQKVIVW 684 45785557***999999997.6899******* PP == domain 8 score: 5.2 bits; conditional E-value: 0.32 EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriWd 38 v l+fs++g+ la ++ D ++ri++ tr|Q9NEW7|Q9NEW7_CAEEL 750 VLRLRFSKNGRKLAVATTDAKLRIFN 775 77899********98988******97 PP >> sp|O02482|UNC37_CAEEL Transcription factor unc-37 OS=Caenorhabditis elegans OX=6239 GN=unc-37 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 13.7 0.0 0.00065 0.097 10 38 .] 321 349 .. 314 349 .. 0.82 2 ? 3.9 0.0 0.81 1.2e+02 12 38 .] 376 402 .. 366 402 .. 0.87 3 ? 9.0 0.0 0.02 3 14 38 .] 420 444 .. 408 444 .. 0.88 4 ! 16.6 0.8 8.2e-05 0.012 3 38 .] 450 486 .. 448 486 .. 0.89 5 ? 3.0 0.0 1.6 2.4e+02 12 35 .. 499 524 .. 490 525 .. 0.76 6 ! 12.0 0.0 0.0024 0.35 4 37 .. 533 567 .. 530 568 .. 0.86 7 ? 4.6 0.0 0.51 76 7 29 .. 578 600 .. 572 607 .. 0.81 Alignments for each domain: == domain 1 score: 13.7 bits; conditional E-value: 0.00065 SSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 10 Hss.vtslafspdgawlasGsdDgtvriWd 38 H+ v++ s+d++ + +G+ +g v+iWd sp|O02482|UNC37_CAEEL 321 HGEvVCAATISRDNSRVYTGG-KGCVKIWD 349 755345555************.*******9 PP == domain 2 score: 3.9 bits; conditional E-value: 0.81 SEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 12 svtslafspdgawlasGsdDgtvriWd 38 ++s++ dg+ l+ G++ tv +Wd sp|O02482|UNC37_CAEEL 376 YIRSCKLFEDGNTLLIGGEASTVALWD 402 4899999999999999**********9 PP == domain 3 score: 9.0 bits; conditional E-value: 0.02 EEEEEETTSSEEEEEETTSEEEEEE CS WD40 14 tslafspdgawlasGsdDgtvriWd 38 ++la spd ++l+++ Dg++ i+d sp|O02482|UNC37_CAEEL 420 YALAMSPDEKLLFACLADGNILIYD 444 68899**********66******98 PP == domain 4 score: 16.6 bits; conditional E-value: 8.2e-05 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +++tl GH ++ ++l+ s+dg+ l sG+ D++vr Wd sp|O02482|UNC37_CAEEL 450 KVGTLPGHqDGASCLDLSKDGTKLWSGGLDNSVRCWD 486 5789****7779***********747999*******9 PP == domain 5 score: 3.0 bits; conditional E-value: 1.6 S..EEEEEEETTSSEEEEEETTSEEE CS WD40 12 s..vtslafspdgawlasGsdDgtvr 35 v sl +p+ w+a G++++ v sp|O02482|UNC37_CAEEL 499 AsqVFSLGCCPNDEWVAVGMENNYVE 524 1358888899*********9888775 PP == domain 6 score: 12.0 bits; conditional E-value: 0.0024 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 + lt H s+v sl+f ++g++++s ++D+ + W sp|O02482|UNC37_CAEEL 533 KYQLTQHeSCVLSLKFAHSGKFFISTGKDNALNAW 567 567899*999**************9999*988776 PP == domain 7 score: 4.6 bits; conditional E-value: 0.51 EESSSSEEEEEEETTSSEEEEEE CS WD40 7 ltGHssvtslafspdgawlasGs 29 l+ ssv s++ s d +++++Gs sp|O02482|UNC37_CAEEL 578 LKENSSVLSCDISFDDSLIVTGS 600 66667899**************7 PP >> tr|P91040|P91040_CAEEL Mtor (MTOR) associated protein, LST8 homolog OS=Caenorhabditis elegans OX=6239 GN=mlst-8 PE=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.4 0.0 0.031 4.7 21 37 .. 51 66 .. 30 67 .. 0.78 2 ? 4.2 0.0 0.69 1e+02 1 38 [] 71 108 .. 71 108 .. 0.76 3 ! 16.4 0.0 9.3e-05 0.014 13 37 .. 125 149 .. 111 150 .. 0.86 4 ? 0.9 0.5 7.5 1.1e+03 6 38 .] 163 194 .. 159 194 .. 0.76 5 ? 2.8 0.0 1.9 2.9e+02 13 38 .] 215 240 .. 208 240 .. 0.87 6 ! 11.4 0.0 0.0035 0.53 8 38 .] 283 311 .. 274 311 .. 0.77 7 ! 17.1 0.3 5.4e-05 0.0081 17 38 .] 332 353 .. 318 353 .. 0.89 Alignments for each domain: == domain 1 score: 8.4 bits; conditional E-value: 0.031 TSSEEEEEETTSEEEEE CS WD40 21 dgawlasGsdDgtvriW 37 + l+s+s+D t+r+W tr|P91040|P91040_CAEEL 51 HAL-LVSASYDLTIRLW 66 433.568899******* PP == domain 2 score: 4.2 bits; conditional E-value: 0.69 TEEEEEEESS..SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 1 gqclrtltGH..ssvtslafspdgawlasGsdDgtvriWd 38 g+c++t+ H + v++l+ + g+ la G ++vri+d tr|P91040|P91040_CAEEL 71 GKCIGTIP-HneGQVNALSLTSTGRDLAVGA-WQKVRIYD 108 68999986.64444****8777777778899.99999988 PP == domain 3 score: 16.4 bits; conditional E-value: 9.3e-05 EEEEEEETTSSEEEEEETTSEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriW 37 vt + f g+w+ +G+dDg +riW tr|P91040|P91040_CAEEL 125 VTVVGFEAAGRWMYTGGDDGVCRIW 149 555668889**************** PP == domain 4 score: 0.9 bits; conditional E-value: 7.5 EEESSSSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 6 tltGHssvtslafspdgawlasGsdDgtvriWd 38 ++ G vts+ + +++ l+ ++ +v +Wd tr|P91040|P91040_CAEEL 163 SFPGS-TVTSIVPNTHQTHLFVSTNSAHVWVWD 194 55555.699998888888887777799999998 PP == domain 5 score: 2.8 bits; conditional E-value: 1.9 EEEEEEETTSSEEEEE.ETTSEEEEEE CS WD40 13 vtslafspdgawlasG.sdDgtvriWd 38 v la++p+g+ l +G + +g + Wd tr|P91040|P91040_CAEEL 215 VQKLAVHPSGKKL-TGiTNKGRLLCWD 240 77899*******8.7998899999998 PP == domain 6 score: 11.4 bits; conditional E-value: 0.0035 ESSSSEEEEEEETTSSEEE.EEETTSEEEEEE CS WD40 8 tGHssvtslafspdgawla.sGsdDgtvriWd 38 +GH + s+++spdg++++ sGs + v++++ tr|P91040|P91040_CAEEL 283 EGH-GL-SCRYSPDGKYIVaSGS-EKEVYVFN 311 388.77.999*******863677.99998876 PP == domain 7 score: 17.1 bits; conditional E-value: 5.4e-05 EEETTSSEEEEEETTSEEEEEE CS WD40 17 afspdgawlasGsdDgtvriWd 38 fs++g+++++G+ D+ v+iWd tr|P91040|P91040_CAEEL 332 IFSSEGRYIFTGGNDNQVKIWD 353 49*******************9 PP >> sp|Q9N4A7|SEC13_CAEEL Protein SEC13 homolog OS=Caenorhabditis elegans OX=6239 GN=npp-20 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.3 0.0 0.034 5.1 8 37 .. 10 40 .. 4 41 .. 0.81 2 ! 19.7 0.1 8.4e-06 0.0013 3 38 .] 50 88 .. 48 88 .. 0.84 3 ? 7.2 0.0 0.075 11 7 34 .. 100 130 .. 94 132 .. 0.73 4 ! 15.4 0.2 0.0002 0.03 8 37 .. 149 185 .. 142 185 .. 0.83 5 ? 4.8 0.0 0.42 63 5 36 .. 198 234 .. 194 236 .. 0.70 6 ! 11.7 0.1 0.0028 0.42 17 37 .. 261 281 .. 251 282 .. 0.86 Alignments for each domain: == domain 1 score: 8.3 bits; conditional E-value: 0.034 ESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 8 tGH.ssvtslafspdgawlasGsdDgtvriW 37 t H + +++ + + +g+ la+++ D+ v+i+ sp|Q9N4A7|SEC13_CAEEL 10 TQHrDAIHDAQLNIYGSRLATCGSDRLVKIF 40 578777999988899999*98866*****97 PP == domain 2 score: 19.7 bits; conditional E-value: 8.4e-06 EEEEEESS.SSEEEEE..EETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtsla..fspdgawlasGsdDgtvriWd 38 ++ +l GH ++v+ ++ +++g +las+s+D++v iW+ sp|Q9N4A7|SEC13_CAEEL 50 PMAELVGHsGPVWKVSwaHPKYGGLLASASYDKKVIIWN 88 567899**777*9997667777777*************8 PP == domain 3 score: 7.2 bits; conditional E-value: 0.075 EESS.SSEEEEE..EETTSSEEEEEETTSEE CS WD40 7 ltGH.ssvtsla..fspdgawlasGsdDgtv 34 + +H s t++a +++g +las+s Dg + sp|Q9N4A7|SEC13_CAEEL 100 WAAHeASTTCVAfaPHQYGLMLASASADGDI 130 557876667887558888888999999*987 PP == domain 4 score: 15.4 bits; conditional E-value: 0.0002 ESS.SSEEEEEEETTSSE......EEEEETTSEEEEE CS WD40 8 tGH.ssvtslafspdgaw......lasGsdDgtvriW 37 + H ++v+s+++ p +a l+s++ D++v+iW sp|Q9N4A7|SEC13_CAEEL 149 KCHeQGVNSVCWAPGSADpaakkrLVSAGNDKNVKIW 185 689889****97777777999999888888******* PP == domain 5 score: 4.8 bits; conditional E-value: 0.42 EEEESS.SSEEEEEEETTSSE....EEEEETTSEEEE CS WD40 5 rtltGH.ssvtslafspdgaw....lasGsdDgtvri 36 +tl GH ++v+ a++p + ++s+++ g++ + sp|Q9N4A7|SEC13_CAEEL 198 KTLAGHtDFVREAAWCPVTNNgqhtIVSCGMEGNLVL 234 7899**7779999744444445557888887888766 PP == domain 6 score: 11.7 bits; conditional E-value: 0.0028 EEETTSSEEEEEETTSEEEEE CS WD40 17 afspdgawlasGsdDgtvriW 37 +fsp g++l+ ++dD+ + iW sp|Q9N4A7|SEC13_CAEEL 261 SFSPCGSFLSVAGDDNVITIW 281 49*******98888******* PP >> sp|P91343|WDR12_CAEEL Ribosome biogenesis protein WDR12 homolog OS=Caenorhabditis elegans OX=6239 GN=wdr-12 PE=3 SV= # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.2 0.0 3.1e-07 4.7e-05 6 38 .] 206 239 .. 202 239 .. 0.92 2 ! 11.4 2.3 0.0035 0.52 4 38 .] 272 308 .. 269 308 .. 0.77 3 ? 5.5 0.0 0.26 39 9 38 .] 320 349 .. 314 349 .. 0.79 4 ! 15.4 0.1 0.0002 0.029 5 38 .] 360 396 .. 357 396 .. 0.78 5 ! 14.8 0.2 0.0003 0.045 7 37 .. 407 436 .. 401 437 .. 0.83 Alignments for each domain: == domain 1 score: 24.2 bits; conditional E-value: 3.1e-07 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 6 tltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +l+GH v ++++++d++ +sGs D +++iW+ sp|P91343|WDR12_CAEEL 206 ILRGHeRAVECVSVNSDSTRAISGSVDTNLKIWN 239 799**666*************************8 PP == domain 2 score: 11.4 bits; conditional E-value: 0.0035 EEEEESS.SSEEEEEEETTSSEEE.EEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawla.sGsdDgtvriWd 38 + t+ GH + v+++ ++p ++ +a s+s+D+t+ Wd sp|P91343|WDR12_CAEEL 272 MVTIGGHrDKVSAVEWCPWNSGHAfSCSWDHTIVEWD 308 56788**877****855555555559*******9998 PP == domain 3 score: 5.5 bits; conditional E-value: 0.26 SSSSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 9 GHssvtslafspdgawlasGsdDgtvriWd 38 G +s ts++ +p +++l+s++ D r++d sp|P91343|WDR12_CAEEL 320 GPKSFTSIDLHPKSDLLISSCTDAIPRLYD 349 55566999*********9887798777776 PP == domain 4 score: 15.4 bits; conditional E-value: 0.0002 EEEESS.SS.EEEEEEETTSSE.EEEEETTSEEEEEE CS WD40 5 rtltGH.ss.vtslafspdgaw.lasGsdDgtvriWd 38 +++ GH ++ v +++++p + ++s s D+t ++Wd sp|P91343|WDR12_CAEEL 360 QSFIGHqNGwVEAVKWNPLDTNqFVSVSTDKTAKMWD 396 6899**9667****866666667666677*******9 PP == domain 5 score: 14.8 bits; conditional E-value: 0.0003 EESS.SSEEEEEEETTSSE....EEEEETTSEEEEE CS WD40 7 ltGH.ssvtslafspdgaw....lasGsdDgtvriW 37 + GH + + + +w +a+Gs D+t++i+ sp|P91343|WDR12_CAEEL 407 IHGHdDRILCA------TWneglIATGSADCTIKIF 436 579*555****......99999899*********97 PP >> tr|Q23494|Q23494_CAEEL Uncharacterized protein OS=Caenorhabditis elegans OX=6239 GN=CELE_ZK430.7 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.1 0.0 5.7e-05 0.0085 5 38 .] 60 95 .. 57 95 .. 0.87 2 ! 11.1 0.0 0.0045 0.68 2 38 .] 100 138 .. 99 138 .. 0.74 3 ? 1.7 0.1 4.1 6.2e+02 9 31 .. 147 174 .. 140 177 .. 0.63 4 ! 15.3 0.0 0.0002 0.03 5 37 .. 273 306 .. 268 307 .. 0.76 5 ! 14.3 0.0 0.00042 0.063 12 38 .] 324 350 .. 317 350 .. 0.92 Alignments for each domain: == domain 1 score: 17.1 bits; conditional E-value: 5.7e-05 EEEESS.SSEEEEEEETTSSE.EEEEETTSEEEEEE CS WD40 5 rtltGH.ssvtslafspdgaw.lasGsdDgtvriWd 38 +l+GH ++v la +p+ + ++sG +Dg v+iW+ tr|Q23494|Q23494_CAEEL 60 ASLDGHvDGVQVLAKHPNRPStVFSGARDGQVKIWN 95 6899**888999998888888778***********8 PP == domain 2 score: 11.1 bits; conditional E-value: 0.0045 EEEEEEESS.SSEEEEE..EETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtsla..fspdgawlasGsdDgtvriWd 38 +c+ tl++H + v++++ ++ +++ + + D+ ++ W+ tr|Q23494|Q23494_CAEEL 100 ECQATLDAHrGLVNDISidNNNGENFV-TVGQDNQLKYWK 138 8********644887776366666665.6677******95 PP == domain 3 score: 1.7 bits; conditional E-value: 4.1 SSSS......EEEEE.EETTSSEEEEEETT CS WD40 9 GHss......vtsla.fspdgawlasGsdD 31 +H s v++++ s ++++++ +++D tr|Q23494|Q23494_CAEEL 147 AH-SiamdgiVYGVShLSFSSDFVT-CGED 174 66.2245555566666688999975.5556 PP == domain 4 score: 15.3 bits; conditional E-value: 0.0002 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvriW 37 ++ G s v ++++sp g+ ++++++D+++r++ tr|Q23494|Q23494_CAEEL 273 QSHQGFtSAVLDVDYSPTGQEFVAAGYDRSIRLF 306 333344444************998888*****97 PP == domain 5 score: 14.3 bits; conditional E-value: 0.00042 SEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 12 svtslafspdgawlasGsdDgtvriWd 38 sv s+ +s d+++++sGs ++r+W+ tr|Q23494|Q23494_CAEEL 324 SVLSVLWSADSKFVLSGSNEMNIRVWK 350 588999********************6 PP >> tr|Q9BL05|Q9BL05_CAEEL RaBConnectin related OS=Caenorhabditis elegans OX=6239 GN=rbc-2 PE=1 SV=3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 12.9 0.0 0.0012 0.18 13 38 .] 30 55 .. 22 55 .. 0.90 2 ! 12.9 0.0 0.0012 0.18 8 37 .. 67 100 .. 62 101 .. 0.79 3 ! 15.3 0.0 0.0002 0.03 4 38 .] 427 468 .. 424 468 .. 0.79 4 ! 15.7 0.0 0.00016 0.024 3 36 .. 1224 1259 .. 1222 1261 .. 0.87 Alignments for each domain: == domain 1 score: 12.9 bits; conditional E-value: 0.0012 EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriWd 38 ++++++ pdga +++G ++g++ iW+ tr|Q9BL05|Q9BL05_CAEEL 30 ICAIRVLPDGATIITGAENGHIIIWK 55 99999********************6 PP == domain 2 score: 12.9 bits; conditional E-value: 0.0012 ESS.SSEEEEE...EETTSSEEEEEETTSEEEEE CS WD40 8 tGH.ssvtsla...fspdgawlasGsdDgtvriW 37 GH + +t+++ + p ++ ++s+s Dg v +W tr|Q9BL05|Q9BL05_CAEEL 67 IGHsQKITAISqttNTPTNTRFVSASADGRVCLW 100 49*555*****9996666666778899******* PP == domain 3 score: 15.3 bits; conditional E-value: 0.0002 EEEEESS.SSEEEEE..EETTSSE....EEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtsla..fspdgaw....lasGsdDgtvriWd 38 r+ltGH v+s+ f +d ++ ++sGsdD +v +W+ tr|Q9BL05|Q9BL05_CAEEL 427 SRILTGHdAAVRSMFypFEHDTRYdpqyFVSGSDDFSVIVWN 468 689****666****9774444444777799***********8 PP == domain 4 score: 15.7 bits; conditional E-value: 0.00016 EEEEEESS.SSEEEEEEETTSSEEEE.EETTSEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlas.GsdDgtvri 36 ++++l H +++ ++afs dg++la+ G +Dg++ + tr|Q9BL05|Q9BL05_CAEEL 1224 KTHSLPSHnGPIAAVAFSEDGKYLATyGAEDGKINF 1259 6799****777*************997789**9976 PP >> tr|O44856|O44856_CAEEL Uncharacterized protein OS=Caenorhabditis elegans OX=6239 GN=CELE_T05A8.5 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.0 0.0 3.4 5.1e+02 9 33 .. 54 78 .. 46 81 .. 0.71 2 ! 24.4 0.2 2.7e-07 4e-05 6 38 .] 138 170 .. 135 170 .. 0.83 3 ! 11.3 0.0 0.0038 0.58 3 38 .] 176 210 .. 174 210 .. 0.71 4 ! 17.5 0.0 4.2e-05 0.0063 7 38 .] 266 301 .. 260 301 .. 0.88 5 ? 3.3 0.0 1.3 1.9e+02 16 33 .. 327 343 .. 324 347 .. 0.83 Alignments for each domain: == domain 1 score: 2.0 bits; conditional E-value: 3.4 SS.SSEEEEEEETTSSEEEEEETTSE CS WD40 9 GH.ssvtslafspdgawlasGsdDgt 33 GH + v+ l + + g ++sG++Dg tr|O44856|O44856_CAEEL 54 GHvDTVNNLTVIRAGM-ILSGGKDGR 78 8877788774444444.458999996 PP == domain 2 score: 24.4 bits; conditional E-value: 2.7e-07 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 6 tltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +++GH ++vt++ ++++ +sGs+D++v+iWd tr|O44856|O44856_CAEEL 138 VFDGHkFGVTGVVSINENQF-MSGSRDCSVKIWD 170 699**777****66666666.68**********9 PP == domain 3 score: 11.3 bits; conditional E-value: 0.0038 EEEEEESS.SSEEEEEEETTSSEEE.EEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawla.sGsdDgtvriWd 38 c+rt t + vt++ +g+++a + s+D++vr+Wd tr|O44856|O44856_CAEEL 176 CVRTQTINrNLVTHM--AYNGNLVAqT-SEDKSVRLWD 210 556555443448888..6689999866.66*******9 PP == domain 4 score: 17.5 bits; conditional E-value: 4.2e-05 EESS.SSEEEEE...EETTSSEEEEEETTSEEEEEE CS WD40 7 ltGH.ssvtsla...fspdgawlasGsdDgtvriWd 38 +GH ++vtsl+ ++ +++las s D+ +r+W+ tr|O44856|O44856_CAEEL 266 ARGHeGNVTSLSivqMDQTKRLLASVSADRQIRLWK 301 58**888*****9999999999*99999*******6 PP == domain 5 score: 3.3 bits; conditional E-value: 1.3 EEEETTSSEEEEEETTSE CS WD40 16 lafspdgawlasGsdDgt 33 ++ pdg+ ++sG+ +g tr|O44856|O44856_CAEEL 327 VCSYPDGHIIVSGG-KGR 343 6788*********9.664 PP >> tr|Q9N393|Q9N393_CAEEL Uncharacterized protein OS=Caenorhabditis elegans OX=6239 GN=CELE_Y54H5A.1 PE=1 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.9 0.3 1.7 2.5e+02 10 38 .] 164 195 .. 156 195 .. 0.75 2 ! 29.5 0.1 7e-09 1e-06 7 38 .] 271 304 .. 268 304 .. 0.90 3 ! 23.2 0.4 6.4e-07 9.6e-05 8 38 .] 319 350 .. 312 350 .. 0.88 4 ! 14.8 0.1 0.00029 0.043 1 38 [] 357 396 .. 357 396 .. 0.80 Alignments for each domain: == domain 1 score: 2.9 bits; conditional E-value: 1.7 S.SSEEEEEEETTSSE.EEEE.ETTSEEEEEE CS WD40 10 H.ssvtslafspdgaw.lasG.sdDgtvriWd 38 H ++++ ++ ++ g+ ++++ sd g v +W+ tr|Q9N393|Q9N393_CAEEL 164 HyGGINRIRSDRLGDStVCACwSDQGRVQVWN 195 656677777666666645667999*******8 PP == domain 2 score: 29.5 bits; conditional E-value: 7e-09 EESS.SSEEEEEEETTSSEE.EEEETTSEEEEEE CS WD40 7 ltGH.ssvtslafspdgawl.asGsdDgtvriWd 38 ltGH +sv +la+sp + l as+s Dg++++Wd tr|Q9N393|Q9N393_CAEEL 271 LTGHkKSVEDLAWSPTETGLlASCSADGSIKLWD 304 89**999************7368999*******9 PP == domain 3 score: 23.2 bits; conditional E-value: 6.4e-07 ESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 8 tGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++H s+v+ ++++++ ++++sG+dDg ++iW+ tr|Q9N393|Q9N393_CAEEL 319 KAHeSDVNVISWNRHENLIVSGGDDGELKIWS 350 69*999*************************5 PP == domain 4 score: 14.8 bits; conditional E-value: 0.00029 TEEEEEEESS.SSEEEEEEETTSSE..EEEEETTSEEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgaw..lasGsdDgtvriWd 38 gq++ ++ H s++ts++++p+ + +a +++D iWd tr|Q9N393|Q9N393_CAEEL 357 GQPVALFKYHnSPITSVDWHPHETTtfMA-SGEDDQTTIWD 396 577888899*777*****99999999555.55588888887 PP >> sp|O45487|EMAL_CAEEL Echinoderm microtubule-associated protein-like elp-1 OS=Caenorhabditis elegans OX=6239 GN=elp-1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.4 0.4 0.00039 0.058 3 29 .. 324 352 .. 322 358 .. 0.86 2 ! 11.4 0.0 0.0035 0.53 4 38 .] 492 528 .. 489 528 .. 0.81 3 ? 8.6 0.1 0.027 4 8 38 .] 540 570 .. 530 570 .. 0.78 4 ? 5.9 0.0 0.2 30 20 38 .] 638 655 .. 618 655 .. 0.74 5 ? 9.6 0.0 0.013 1.9 9 37 .. 709 737 .. 699 738 .. 0.85 6 ? 2.1 0.0 3.1 4.6e+02 10 25 .. 753 770 .. 745 783 .. 0.78 7 ? 6.9 0.0 0.092 14 8 37 .. 813 843 .. 808 844 .. 0.70 8 ? 1.9 0.0 3.6 5.4e+02 7 34 .. 857 885 .. 848 888 .. 0.73 Alignments for each domain: == domain 1 score: 14.4 bits; conditional E-value: 0.00039 EEEEEESS.SSEEEEEEETTSSEEEEE.E CS WD40 3 clrtltGH.ssvtslafspdgawlasG.s 29 +r++ GH ++v ++ +p++ ++asG s sp|O45487|EMAL_CAEEL 324 SQRIYHGHtCDVKCITLHPNKILVASGqS 352 5899****999**************9864 PP == domain 2 score: 11.4 bits; conditional E-value: 0.0035 EEEEESS.SS..EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ss..vtslafspdgawlasGsdDgtvriWd 38 + t++G ++ v s++f + + + +G+ +gt+ iWd sp|O45487|EMAL_CAEEL 492 VATFEGRdKPktVLSMCFGENDQVV-TGDSNGTISIWD 528 6778888755779999999999996.8*66*******9 PP == domain 3 score: 8.6 bits; conditional E-value: 0.027 ESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 8 tGH.ssvtslafspdgawlasGsdDgtvriWd 38 + H ++v+sl ++g+ l sG++D+ v Wd sp|O45487|EMAL_CAEEL 540 SVHpGGVYSLTLAKSGKIL-SGGKDRMVSEWD 570 346666****999999998.7*******9998 PP == domain 4 score: 5.9 bits; conditional E-value: 0.2 TTSSEEEEEETTSEEEEEE CS WD40 20 pdgawlasGsdDgtvriWd 38 +++++ +++s gt+riW+ sp|O45487|EMAL_CAEEL 638 SSNQL-ITSSQCGTLRIWN 655 34445.57899*******8 PP == domain 5 score: 9.6 bits; conditional E-value: 0.013 SSSSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 9 GHssvtslafspdgawlasGsdDgtvriW 37 G ++t+++f p+ga +a +++D+++ i+ sp|O45487|EMAL_CAEEL 709 GTAPITAVKFAPSGATFAVATKDPHLTIY 737 5557**************9******9887 PP == domain 6 score: 2.1 bits; conditional E-value: 3.1 S..SSEEEEEEETTSSEE CS WD40 10 H..ssvtslafspdgawl 25 H ++ +l+fs+d+++l sp|O45487|EMAL_CAEEL 753 HipAPIVALDFSSDSQYL 770 5555699*********97 PP == domain 7 score: 6.9 bits; conditional E-value: 0.092 ESSSS...EEEEEEETTSSEEEEEETTSEEEEE CS WD40 8 tGHss...vtslafspdgawlasGsdDgtvriW 37 +Hss vt++ + + a+G+++gt+ri+ sp|O45487|EMAL_CAEEL 813 VAHSSngqVTAV--AQCEDISACGMENGTIRIY 843 578334689999..444444577889******8 PP == domain 8 score: 1.9 bits; conditional E-value: 3.6 EESSSS.EEEEEEETTSSEEEEEE.TTSEE CS WD40 7 ltGHss.vtslafspdgawlasGs.dDgtv 34 l GH+ + s+afs +++ s+s D++v sp|O45487|EMAL_CAEEL 857 LLGHGRiIKSVAFSNKIQLF-SCSpTDNSV 885 559*5557***998877776.565448887 PP >> tr|G5EFD7|G5EFD7_CAEEL Uncharacterized protein OS=Caenorhabditis elegans OX=6239 GN=CELE_F46C5.9 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.0 0.2 1.8e-07 2.7e-05 3 38 .] 83 119 .. 81 119 .. 0.88 2 ? 2.8 0.0 1.9 2.8e+02 10 38 .] 191 220 .. 173 220 .. 0.71 3 ? 5.0 0.0 0.38 57 2 28 .. 224 252 .. 223 269 .. 0.78 4 ! 14.8 0.1 0.0003 0.045 3 38 .] 275 311 .. 273 311 .. 0.93 5 ! 16.7 0.1 7.6e-05 0.011 13 36 .. 383 405 .. 374 407 .. 0.89 Alignments for each domain: == domain 1 score: 25.0 bits; conditional E-value: 1.8e-07 EEEEEESS.SSEEEEEEETTSSEEEE.EETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlas.GsdDgtvriWd 38 ++ +l+GH + vt++af +dg+ ++s ++ D++v +Wd tr|G5EFD7|G5EFD7_CAEEL 83 NVSVLKGHkKEVTDVAFASDGKKFVSiSG-DRSVILWD 119 7889****888************874367.*******9 PP == domain 2 score: 2.8 bits; conditional E-value: 1.9 SSSEEEEE.....EETTSSEEEEEETTSEEEEEE CS WD40 10 Hssvtsla.....fspdgawlasGsdDgtvriWd 38 H ++ + ++l+s+ D+++ ++d tr|G5EFD7|G5EFD7_CAEEL 191 H----QVDiqnigIAGNAKYLMSAALDNKICLYD 220 3....33333444788999***9999******98 PP == domain 3 score: 5.0 bits; conditional E-value: 0.38 EEEEEEESS.SSEEEEEEETTSSEEE.EE CS WD40 2 qclrtltGH.ssvtslafspdgawla.sG 28 q+l+++++ ss ++++ spdg++++ sG tr|G5EFD7|G5EFD7_CAEEL 224 QLLQSIDAKvSSLYDCRLSPDGRFIIvSG 252 66777777777789999*******86255 PP == domain 4 score: 14.8 bits; conditional E-value: 0.0003 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++ +l+GH s+v + af+ +++ ++ s+Dg+ ri+d tr|G5EFD7|G5EFD7_CAEEL 275 KVFSLSGHqSGVLAAAFNNSSTRAVTVSRDGKWRIFD 311 67899***888************9999********98 PP == domain 5 score: 16.7 bits; conditional E-value: 7.6e-05 EEEEEEETTSSEEEEEETTSEEEE CS WD40 13 vtslafspdgawlasGsdDgtvri 36 ++s+a+s+dg+++a+++ D+ vr+ tr|G5EFD7|G5EFD7_CAEEL 383 ISSIAYSSDGKYIATCG-DKYVRV 405 99***************.*****8 PP >> sp|Q9U2A9|BOP1_CAEEL Ribosome biogenesis protein BOP1 homolog OS=Caenorhabditis elegans OX=6239 GN=Y48B6A.1 PE=3 SV= # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.0 0.0 1.4e-05 0.0021 8 37 .. 341 372 .. 334 373 .. 0.76 2 ? 2.3 0.0 2.7 4.1e+02 1 22 [. 377 398 .. 377 422 .. 0.76 3 ? 2.3 0.0 2.6 3.9e+02 7 27 .. 504 522 .. 498 532 .. 0.80 4 ! 13.8 0.0 0.0006 0.09 5 37 .. 583 616 .. 579 616 .. 0.86 5 ! 17.0 0.0 6e-05 0.009 3 36 .. 632 671 .. 630 673 .. 0.89 Alignments for each domain: == domain 1 score: 19.0 bits; conditional E-value: 1.4e-05 ESS.SSEEEEEEETTSSE.EEEEETTSEEEEE CS WD40 8 tGH.ssvtslafspdgaw.lasGsdDgtvriW 37 +GH + v+++ + p+ lasG++DgtvriW sp|Q9U2A9|BOP1_CAEEL 341 RGHtGQVRAITVEPERGElLASGGEDGTVRIW 372 79966699998444444437899********* PP == domain 2 score: 2.3 bits; conditional E-value: 2.7 TEEEEEEE..SSSSEEEEEEETTS CS WD40 1 gqclrtlt..GHssvtslafspdg 22 g+c++t+ G vts++fsp sp|Q9U2A9|BOP1_CAEEL 377 GRCIKTFQmdGE--VTSVSFSPVA 398 578888863344..*****99955 PP == domain 3 score: 2.3 bits; conditional E-value: 2.6 EESSSSEEEEEEETTSSEEEE CS WD40 7 ltGHssvtslafspdgawlas 27 +GH v ++ f+p +a l+ sp|Q9U2A9|BOP1_CAEEL 504 RKGH--VQAVTFHPTQARLFV 522 579*..********9998764 PP == domain 4 score: 13.8 bits; conditional E-value: 0.0006 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvriW 37 ++l+ H v+s+a+++ ++la+ sdDgt +++ sp|Q9U2A9|BOP1_CAEEL 583 KKLKHHtAAVRSVAYHKKYPLLATVSDDGTAMVY 616 567788666*********************9986 PP == domain 5 score: 17.0 bits; conditional E-value: 6e-05 EEEEEESS.SSEEEEE.....EETTSSEEEEEETTSEEEE CS WD40 3 clrtltGH.ssvtsla.....fspdgawlasGsdDgtvri 36 +++ l++H + ++l+ ++p ++wl++++ Dgt+ + sp|Q9U2A9|BOP1_CAEEL 632 PVKRLRAHeKTPNDLCmlhttWHPTQPWLITAGADGTIAL 671 678899**9889999999************9988***965 PP >> sp|Q18964|WDFY2_CAEEL WD repeat and FYVE domain-containing protein 2 OS=Caenorhabditis elegans OX=6239 GN=wdfy-2 PE= # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 11.4 0.0 0.0035 0.53 3 37 .. 23 58 .. 22 58 .. 0.83 2 ? 8.2 0.1 0.035 5.3 5 34 .. 115 145 .. 111 147 .. 0.89 3 ! 24.3 0.3 2.9e-07 4.4e-05 3 38 .] 196 232 .. 194 232 .. 0.93 4 ? 7.9 0.0 0.044 6.7 6 38 .] 242 275 .. 239 275 .. 0.90 5 ? 7.7 0.0 0.051 7.7 10 38 .] 375 403 .. 367 403 .. 0.76 Alignments for each domain: == domain 1 score: 11.4 bits; conditional E-value: 0.0035 EEEEEESS.SSEEEEE..EETTSSEEEEEETTSEEEEE CS WD40 3 clrtltGH.ssvtsla..fspdgawlasGsdDgtvriW 37 +l+ +tGH ++++ ++g w ++sdD++vr++ sp|Q18964|WDFY2_CAEEL 23 LLHRITGHvARINDVIllSKDEGVW--TASDDRSVRLY 58 57889***888****7777777777..6899*****97 PP == domain 2 score: 8.2 bits; conditional E-value: 0.035 EEEESS.SSEEEEEEETTSSEEEEEETTSEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtv 34 r++t H +++++l f ++ +++s+s+D+++ sp|Q18964|WDFY2_CAEEL 115 RKWTCHaGPISGLGFALSSELIFSCSRDKSI 145 77899*889****999999**********98 PP == domain 3 score: 24.3 bits; conditional E-value: 2.9e-07 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++ +l++H + +tsl ++ +++ l sGs D+ + +Wd sp|Q18964|WDFY2_CAEEL 196 LVSKLSAHtNAITSLTWDGNKKVLYSGSSDHLIIMWD 232 67889***999****************99*******9 PP == domain 4 score: 7.9 bits; conditional E-value: 0.044 EEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 6 tltGHss.vtslafspdgawlasGsdDgtvriWd 38 +l GH++ vt l+ p + l+s+++ g+++ Wd sp|Q18964|WDFY2_CAEEL 242 ELNGHNGkVTTLCAAPAAKRLFSADEHGKLMCWD 275 689**666***************999*******8 PP == domain 5 score: 7.7 bits; conditional E-value: 0.051 SSSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 10 HssvtslafspdgawlasGsdDgtvriWd 38 H+++t++ + +l++++ ++ ++iWd sp|Q18964|WDFY2_CAEEL 375 HTGITAMHLQETLGLLVTSGQNRVIMIWD 403 566777744444455999999*******9 PP >> tr|G5EGS3|G5EGS3_CAEEL Kinesin-like protein OS=Caenorhabditis elegans OX=6239 GN=klp-12 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.9 0.0 7.1e-06 0.0011 4 38 .] 1277 1310 .. 1274 1310 .. 0.91 2 ? 4.9 0.0 0.4 61 13 38 .] 1394 1418 .. 1384 1418 .. 0.91 3 ? 6.1 0.0 0.16 24 9 35 .. 1432 1464 .. 1422 1466 .. 0.79 4 ! 16.3 0.0 9.7e-05 0.015 6 38 .] 1522 1557 .. 1518 1557 .. 0.81 5 ? 3.7 0.0 0.97 1.5e+02 8 38 .] 1572 1601 .. 1564 1601 .. 0.73 Alignments for each domain: == domain 1 score: 19.9 bits; conditional E-value: 7.1e-06 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++tl+GH +v s+ + + +++++Gs+D+t ++Wd tr|G5EGS3|G5EGS3_CAEEL 1277 THTLEGHaRGVLSV--DVNEKLMVTGSKDRTAKLWD 1310 799****7779999..889999*************9 PP == domain 2 score: 4.9 bits; conditional E-value: 0.4 EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriWd 38 +t+ +++p g++l+++ vr+W+ tr|G5EGS3|G5EGS3_CAEEL 1394 ITAADVDPTGQLLFTSF-SAYVRVWN 1418 89999*********999.*******8 PP == domain 3 score: 6.1 bits; conditional E-value: 0.16 SSSS...EEEEE..EETTSSEEE.EEETTSEEE CS WD40 9 GHss...vtsla..fspdgawla.sGsdDgtvr 35 Hs+ v++l+ p+g+ la +Gs+D+ v+ tr|G5EGS3|G5EGS3_CAEEL 1432 SHSPkseVSCLRttMTPEGSILAyTGSRDHYVK 1464 5733558*******99*****988******997 PP == domain 4 score: 16.3 bits; conditional E-value: 9.7e-05 EEESS.SSEEEEE.EETTSSE.EEEEETTSEEEEEE CS WD40 6 tltGH.ssvtsla.fspdgaw.lasGsdDgtvriWd 38 +l++H + + sl f p g+ l+s+++Dgt+r+Wd tr|G5EGS3|G5EGS3_CAEEL 1522 ELRAHqQYIQSLTgFGPKGKElLVSACKDGTIRFWD 1557 578997779999997777777257999********9 PP == domain 5 score: 3.7 bits; conditional E-value: 0.97 ESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 8 tGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++H +++++ ++ +++l+++s D tv +W+ tr|G5EGS3|G5EGS3_CAEEL 1572 KAHqEGINDM--CSTKSMLFTASGDSTVGFWK 1601 4897779999..666666777766****9995 PP >> sp|G5EFW7|IF122_CAEEL Intraflagellar transport protein 122 homolog OS=Caenorhabditis elegans OX=6239 GN=daf-10 PE=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.1 0.0 1.4 2.2e+02 13 38 .] 22 46 .. 10 46 .. 0.81 2 ! 28.1 0.1 1.8e-08 2.8e-06 3 38 .] 52 88 .. 50 88 .. 0.94 3 ? 2.1 0.0 3.1 4.6e+02 6 29 .. 94 119 .. 89 135 .. 0.76 4 ? 7.4 0.8 0.065 9.8 14 34 .. 143 163 .. 128 165 .. 0.81 5 ? 7.3 0.0 0.07 10 8 37 .. 240 265 .. 233 266 .. 0.79 6 ? 6.3 0.1 0.15 22 10 36 .. 280 305 .. 270 307 .. 0.86 Alignments for each domain: == domain 1 score: 3.1 bits; conditional E-value: 1.4 EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriWd 38 +++laf pdg+ l+ + D++v+++d sp|G5EFW7|IF122_CAEEL 22 IYDLAFKPDGSELLLAA-DNKVYLFD 46 89**********86467.99999987 PP == domain 2 score: 28.1 bits; conditional E-value: 1.8e-08 EEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 +++tl+GH++ v+ +a+s++g ++asG+ D+ v +W+ sp|G5EFW7|IF122_CAEEL 52 QMQTLKGHKDlVYTVAWSHNGELFASGGADKLVILWN 88 5789****8889************************8 PP == domain 3 score: 2.1 bits; conditional E-value: 3.1 EEE.SSSS.EEEEEEETTSSEEEEEE CS WD40 6 tlt.GHss.vtslafspdgawlasGs 29 tl+ H++ + ++ f+p ++ l+++ sp|G5EFW7|IF122_CAEEL 94 TLRySHTDvIQCMMFNPCNQILLTCA 119 5544797756************9975 PP == domain 4 score: 7.4 bits; conditional E-value: 0.065 EEEEEETTSSEEEEEETTSEE CS WD40 14 tslafspdgawlasGsdDgtv 34 +s+a++ dg+ +a G+ Dgt+ sp|G5EFW7|IF122_CAEEL 143 CSCAWNTDGTIFAIGHGDGTI 163 4555***********88***9 PP == domain 5 score: 7.3 bits; conditional E-value: 0.07 ESSSSE.EEEEEETTSSEEEEEETTSEEEEE CS WD40 8 tGHssv.tslafspdgawlasGsdDgtvriW 37 + H ++ ++l +g +l+ G+ D+ ++i+ sp|G5EFW7|IF122_CAEEL 240 EPH-CIsYCL----NGEYLLIGGSDKILKIY 265 556.666777....****998977*****98 PP == domain 6 score: 6.3 bits; conditional E-value: 0.15 SSSEEEEEEETTSSEEEEEETTSEEEE CS WD40 10 HssvtslafspdgawlasGsdDgtvri 36 H +++s+ + p+++ +a G+ Dgt+ sp|G5EFW7|IF122_CAEEL 280 H-WIWSVTVRPNSQTVAMGCVDGTIAC 305 6.7*************99*9****965 PP >> sp|G5EES6|UFD3_CAEEL Ubiquitin fusion degradation protein 3 homolog OS=Caenorhabditis elegans OX=6239 GN=ufd-3 PE=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.9 0.1 0.011 1.6 4 37 .. 22 55 .. 19 55 .. 0.75 2 ! 14.6 0.1 0.00033 0.05 5 37 .. 111 144 .. 107 144 .. 0.90 3 ! 13.9 0.0 0.00055 0.083 6 37 .. 160 193 .. 155 193 .. 0.80 4 ! 16.0 1.7 0.00012 0.018 3 38 .] 198 233 .. 196 233 .. 0.89 5 ? 6.5 0.0 0.12 18 9 37 .. 247 273 .. 238 273 .. 0.70 6 ? 0.6 0.0 9 1.4e+03 22 36 .. 307 320 .. 295 320 .. 0.80 Alignments for each domain: == domain 1 score: 9.9 bits; conditional E-value: 0.011 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 +++++H s+ +la+ + g ++ sG++D tv++W sp|G5EES6|UFD3_CAEEL 22 SHVIEAHkSDTKALAVTQGGCLI-SGGRDETVKFW 55 57788997665566666666666.8********** PP == domain 2 score: 14.6 bits; conditional E-value: 0.00033 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvriW 37 ++ H ++v++l + + ++sGs+D +v iW sp|G5EES6|UFD3_CAEEL 111 AIFNEHkQNVCCLHINEKATHMLSGSWDSNVIIW 144 57889*777*****99999*************** PP == domain 3 score: 13.9 bits; conditional E-value: 0.00055 EEESS.SSEEEEEEETTSSE..EEEEETTSEEEEE CS WD40 6 tltGH.ssvtslafspdgaw..lasGsdDgtvriW 37 ++ GH sv++la pd + l s+s D+t+r+W sp|G5EES6|UFD3_CAEEL 160 VCPGHtLSVWALASFPDLPNtyL-SASADKTIRMW 193 578**777*****8888888667.5667******* PP == domain 4 score: 16.0 bits; conditional E-value: 0.00012 EEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 +l +++GH++ v++l + +++++l++G Dg++ Wd sp|G5EES6|UFD3_CAEEL 198 TLSVFKGHTDvVRALVVLSSSHFLSAGN-DGHIIHWD 233 5789****8857***********98777.*******9 PP == domain 5 score: 6.5 bits; conditional E-value: 0.12 SSSSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 9 GHssvtslafspdgawlasGsdDgtvriW 37 +H +++s+ + +d++ l++G Dgt+ +W sp|G5EES6|UFD3_CAEEL 247 AHEFIYSM-TLSDSHILTTGE-DGTLEFW 273 77779999.445555567766.******* PP == domain 6 score: 0.6 bits; conditional E-value: 9 SSEEEEEETTSEEEE CS WD40 22 gawlasGsdDgtvri 36 ++ ++Gs Dg ++i sp|G5EES6|UFD3_CAEEL 307 SDIAVAGS-DGRIYI 320 5557799*.***987 PP >> tr|E0R7L2|E0R7L2_CAEEL Uncharacterized protein OS=Caenorhabditis elegans OX=6239 GN=CELE_Y111B2A.12 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.5 0.0 0.25 38 5 37 .. 52 84 .. 49 85 .. 0.65 2 ? 6.6 0.0 0.12 18 9 36 .. 98 126 .. 92 126 .. 0.85 3 ? 5.3 0.7 0.3 45 16 37 .. 147 168 .. 138 168 .. 0.89 4 ! 12.7 0.1 0.0014 0.2 7 37 .. 181 212 .. 176 212 .. 0.73 5 ? 4.1 0.1 0.72 1.1e+02 4 36 .. 219 251 .. 216 253 .. 0.79 6 ? 9.8 0.0 0.011 1.7 12 37 .. 301 326 .. 295 327 .. 0.89 7 ! 10.8 0.0 0.0053 0.79 19 38 .] 353 372 .. 338 372 .. 0.85 8 ? 1.8 0.0 3.7 5.5e+02 20 38 .] 398 415 .. 379 415 .. 0.74 Alignments for each domain: == domain 1 score: 5.5 bits; conditional E-value: 0.25 EEEESS.SS...EEEEEEETTSSEEEEEETTSEEEEE CS WD40 5 rtltGH.ss...vtslafspdgawlasGsdDgtvriW 37 +l +H ++ v +l +++wla+G++D ++ tr|E0R7L2|E0R7L2_CAEEL 52 MSLQAHaQDcftV-AL---ASNRWLATGGEDDVAFLF 84 5666776553333.33...5679******99876665 PP == domain 2 score: 6.6 bits; conditional E-value: 0.12 SS.SSEEEEEEETTSSEEEEEETTSEEEE CS WD40 9 GH.ssvtslafspdgawlasGsdDgtvri 36 H +svt + f+++ ++la+G+ g+++i tr|E0R7L2|E0R7L2_CAEEL 98 EHkDSVTQVMFNHSETLLATGDLSGKIMI 126 59667****************88888876 PP == domain 3 score: 5.3 bits; conditional E-value: 0.3 EEEETTSSEEEEEETTSEEEEE CS WD40 16 lafspdgawlasGsdDgtvriW 37 +++++ + l++G++Dg + +W tr|E0R7L2|E0R7L2_CAEEL 147 MCWHQTADILFAGDKDGILWMW 168 579999*************999 PP == domain 4 score: 12.7 bits; conditional E-value: 0.0014 EESS.SSEE..EEEEETTSSEEEEEETTSEEEEE CS WD40 7 ltGH.ssvt..slafspdgawlasGsdDgtvriW 37 + G ss t +l pdg+ +++G Dg vr+W tr|E0R7L2|E0R7L2_CAEEL 181 YAGNgSSCTtgCL--MPDGKRIMCGYSDGIVRLW 212 5566555532244..9*********55******* PP == domain 5 score: 4.1 bits; conditional E-value: 0.72 EEEEESSSSEEEEEEETTSSEEEEEETTSEEEE CS WD40 4 lrtltGHssvtslafspdgawlasGsdDgtvri 36 ++l Hs++t+++ + ++ + G+ gtv + tr|E0R7L2|E0R7L2_CAEEL 219 STHLYFHSPITAIDHHVTQTVAIIGTQSGTVNV 251 567889999****88888888777988888866 PP == domain 6 score: 9.8 bits; conditional E-value: 0.011 SEEEEEEETTSSEEEEEETTSEEEEE CS WD40 12 svtslafspdgawlasGsdDgtvriW 37 +v sla p+++w+a G Dgt i+ tr|E0R7L2|E0R7L2_CAEEL 301 CVESLAMAPSHPWFAVGRNDGTMCIY 326 699999***********88***9997 PP == domain 7 score: 10.8 bits; conditional E-value: 0.0053 ETTSSEEEEEETTSEEEEEE CS WD40 19 spdgawlasGsdDgtvriWd 38 + +++++Gs Dgt+ri+d tr|E0R7L2|E0R7L2_CAEEL 353 EGNAPYVTAGSIDGTIRIFD 372 567899************98 PP == domain 8 score: 1.8 bits; conditional E-value: 3.7 TTSSEEEEEETTSEEEEEE CS WD40 20 pdgawlasGsdDgtvriWd 38 ++++++Gs g vr++d tr|E0R7L2|E0R7L2_CAEEL 398 NPHRFMTAGS-GGIVRVFD 415 4456688899.******98 PP >> sp|Q93454|RAE1_CAEEL mRNA export factor rae-1 OS=Caenorhabditis elegans OX=6239 GN=rae-1 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.4 0.0 2.2e-05 0.0034 19 37 .. 54 72 .. 39 73 .. 0.89 2 ? 7.9 0.0 0.046 6.9 13 38 .] 92 117 .. 78 117 .. 0.72 3 ! 16.4 0.4 9e-05 0.014 4 38 .] 123 160 .. 120 160 .. 0.74 4 ? 9.7 0.1 0.012 1.8 6 38 .] 262 306 .. 258 306 .. 0.77 5 ? 3.7 0.0 0.94 1.4e+02 8 26 .. 317 336 .. 310 349 .. 0.77 Alignments for each domain: == domain 1 score: 18.4 bits; conditional E-value: 2.2e-05 ETTSSEEEEEETTSEEEEE CS WD40 19 spdgawlasGsdDgtvriW 37 ++d+++la+Gs+Dgt+r+W sp|Q93454|RAE1_CAEEL 54 PQDKPMLACGSWDGTIRVW 72 678999************* PP == domain 2 score: 7.9 bits; conditional E-value: 0.046 EEEEEEETTSSEEE.EEETTSEEEEEE CS WD40 13 vtslafspdgawla.sGsdDgtvriWd 38 + ++a+ d++ ++ ++ D+ r+Wd sp|Q93454|RAE1_CAEEL 92 ILDIAWIEDSSKIFiACA-DKEARLWD 117 788887777777651566.*******9 PP == domain 3 score: 16.4 bits; conditional E-value: 9e-05 EEEEESS.SSEEEEEEETTSSE..EEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgaw..lasGsdDgtvriWd 38 + + +H ++v + + +++ l++Gs D+t+r+Wd sp|Q93454|RAE1_CAEEL 123 VAVVGTHdGPVKTCHWINGNNYqcLMTGSFDKTLRFWD 160 56677897779666444444556799***********9 PP == domain 4 score: 9.7 bits; conditional E-value: 0.012 EEESS.SS...........EEEEEEETTSSEEE.EEETTSEEEEEE CS WD40 6 tltGH.ss...........vtslafspdgawla.sGsdDgtvriWd 38 t++ H s v++++f+p + l+ Gs Dg +Wd sp|Q93454|RAE1_CAEEL 262 TFKCHrSAelvngfqeiyaVNDICFHPQHGTLVtIGS-DGRYSMWD 306 677776556766677777789999999999987359*.**999998 PP == domain 5 score: 3.7 bits; conditional E-value: 0.94 ESS.SSEEEEEEETTSSEEE CS WD40 8 tGH.ssvtslafspdgawla 26 + H + t+++++++ga+l+ sp|Q93454|RAE1_CAEEL 317 EPHpMPLTCCDVHSSGAFLV 336 5575559***********86 PP >> tr|P91867|P91867_CAEEL THO Complex (Transcription factor/nuclear export) subunit OS=Caenorhabditis elegans OX=6239 G # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.9 0.0 0.19 28 14 36 .. 40 62 .. 29 64 .. 0.86 2 ! 14.2 0.2 0.00045 0.067 7 38 .] 76 109 .. 70 109 .. 0.78 3 ! 18.4 0.1 2.2e-05 0.0033 2 38 .] 198 237 .. 197 237 .. 0.89 4 ! 18.1 0.1 2.6e-05 0.0039 4 34 .. 244 275 .. 242 277 .. 0.85 5 ? 5.5 0.0 0.26 39 13 31 .. 295 313 .. 283 318 .. 0.76 Alignments for each domain: == domain 1 score: 5.9 bits; conditional E-value: 0.19 EEEEEETTSSEEEEEETTSEEEE CS WD40 14 tslafspdgawlasGsdDgtvri 36 s+af+ dg+ l++G D++v + tr|P91867|P91867_CAEEL 40 QSIAFNCDGTKLVCGAFDKKVSV 62 4788***********88**9976 PP == domain 2 score: 14.2 bits; conditional E-value: 0.00045 EESS.SSEEEEEEETTSSEE.EEEETTSEEEEEE CS WD40 7 ltGH.ssvtslafspdgawl.asGsdDgtvriWd 38 + H ssv +a s ++ l as+s D+++ +Wd tr|P91867|P91867_CAEEL 76 GSSHsSSVEQVACSEKQPNLfASASADRNICVWD 109 4689777*999966666666267899*******9 PP == domain 3 score: 18.4 bits; conditional E-value: 2.2e-05 EEEEEEESSSS.EEEEE..EETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGHss.vtsla..fspdgawlasGsdDgtvriWd 38 ++++++ +Hs+ v +la s+dg+ la G D ++ +Wd tr|P91867|P91867_CAEEL 198 EPVTSIQAHSHqVECLAvsISKDGRKLAVGASDASCSLWD 237 57889999*778*999999***********55*******9 PP == domain 4 score: 18.1 bits; conditional E-value: 2.6e-05 EEEEESS.SSEEEEEEETTSSEEEEEETTSEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtv 34 r++ H ++++++fs +g++lasGs+D+++ tr|P91867|P91867_CAEEL 244 ERVIPRHdYGIRAVSFSCNGQLLASGSEDHSI 275 5666779444********************98 PP == domain 5 score: 5.5 bits; conditional E-value: 0.26 EEEEEEETTSSEEE.EEETT CS WD40 13 vtslafspdgawla.sGsdD 31 +s+a++p++ +la ++s D tr|P91867|P91867_CAEEL 295 TYSVAWHPNSLLLAyTAS-D 313 579**********88887.4 PP >> tr|Q4W5Q8|Q4W5Q8_CAEEL ADiPose (Drosophila obesity gene) Related OS=Caenorhabditis elegans OX=6239 GN=adpr-1 PE=1 SV # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 34.2 0.1 2.2e-10 3.3e-08 4 38 .] 34 69 .. 31 69 .. 0.91 2 ? 7.2 0.0 0.077 12 4 35 .. 74 109 .. 71 112 .. 0.69 3 ? 5.6 0.0 0.24 36 18 38 .] 446 466 .. 428 466 .. 0.72 4 ? 4.4 0.0 0.58 87 6 37 .. 475 507 .. 470 508 .. 0.75 Alignments for each domain: == domain 1 score: 34.2 bits; conditional E-value: 2.2e-10 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 + l+GH ++v+ l++++ ga+lasGsdD++v+iW+ tr|Q4W5Q8|Q4W5Q8_CAEEL 34 FHMLEGHsGCVNTLRWNKTGALLASGSDDRNVKIWK 69 6889***666*************************6 PP == domain 2 score: 7.2 bits; conditional E-value: 0.077 EEEE.ESS.SSEEEEE...EETTSSEEEEEETTSEEE CS WD40 4 lrtl.tGH.ssvtsla...fspdgawlasGsdDgtvr 35 ++ l tGH ++v ++ +s d++++ +G D+ v tr|Q4W5Q8|Q4W5Q8_CAEEL 74 IHNLvTGHeGNVFAVEflqNSGDQKLV-TGAADRVVA 109 566437**7666555555499999996.7988*9885 PP == domain 3 score: 5.6 bits; conditional E-value: 0.24 EETTSSEEEEEETTSEEEEEE CS WD40 18 fspdgawlasGsdDgtvriWd 38 f + +++++Gsd g+ +iW+ tr|Q4W5Q8|Q4W5Q8_CAEEL 446 FGSRDQYIIAGSDCGHMYIWN 466 4455567889**********8 PP == domain 4 score: 4.4 bits; conditional E-value: 0.58 EEESSSSEEEEE.EETTSSEEEEEETTSEEEEE CS WD40 6 tltGHssvtsla.fspdgawlasGsdDgtvriW 37 ++++ +++ ++ +pd+ ++a+++ D + +W tr|Q4W5Q8|Q4W5Q8_CAEEL 475 IFEADDHILNICqPHPDQFMIATAGIDDDILLW 507 55544447556659999999************* PP >> sp|Q09373|FZY1_CAEEL WD repeat-containing protein fzy-1 OS=Caenorhabditis elegans OX=6239 GN=fzy-1 PE=1 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.4 0.0 0.031 4.7 13 38 .] 224 249 .. 210 249 .. 0.85 2 ! 23.9 2.3 4.1e-07 6.2e-05 9 38 .] 313 343 .. 301 343 .. 0.88 3 ! 14.4 0.0 0.00039 0.058 3 38 .] 358 397 .. 356 397 .. 0.66 4 ? 4.7 0.0 0.47 70 19 37 .. 423 440 .. 403 441 .. 0.72 Alignments for each domain: == domain 1 score: 8.4 bits; conditional E-value: 0.031 EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriWd 38 +ts+++s++g++++ G g v+i+d sp|Q09373|FZY1_CAEEL 224 ITSVRWSQEGRYISLGYASGAVKIYD 249 9***********966988******98 PP == domain 2 score: 23.9 bits; conditional E-value: 4.1e-07 SS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 9 GH.ssvtslafspdgawlasGsdDgtvriWd 38 GH +vt+l +s d ++ +sGs D+t +iWd sp|Q09373|FZY1_CAEEL 313 GHcRDVTALEWSADENMCVSGSSDRTAKIWD 343 99767****************99*******9 PP == domain 3 score: 14.4 bits; conditional E-value: 0.00039 EEEEEESS.SSE.EEEE.EETTSSEEEEEE..TTSEEEEEE CS WD40 3 clrtltGH.ssv.tsla.fspdgawlasGs..dDgtvriWd 38 ++ t++ H + v t++ +dg + a+G+ Dgtv++Wd sp|Q09373|FZY1_CAEEL 358 PMFTIDEHtGQVrTAQFcSFRDGIL-ATGGgiNDGTVKLWD 397 5667778855595444325555555.8897466*******9 PP == domain 4 score: 4.7 bits; conditional E-value: 0.47 ETTSSEEEEEETTSEEEEE CS WD40 19 spdgawlasGsdDgtvriW 37 p++ +l ++sdDg +ri+ sp|Q09373|FZY1_CAEEL 423 RPYSEML-TASDDGFLRIY 440 4555665.7899******8 PP >> tr|H2L0C5|H2L0C5_CAEEL Uncharacterized protein OS=Caenorhabditis elegans OX=6239 GN=CELE_H24G06.1 PE=1 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.6 0.0 0.057 8.5 7 37 .. 53 91 .. 48 92 .. 0.81 2 ? 4.2 0.2 0.66 1e+02 2 38 .] 103 142 .. 102 142 .. 0.78 3 ? 1.6 0.1 4.4 6.6e+02 12 37 .. 152 181 .. 144 181 .. 0.76 4 ? 4.1 0.0 0.71 1.1e+02 6 37 .. 234 277 .. 230 278 .. 0.75 5 ! 20.4 0.1 4.9e-06 0.00074 9 38 .] 360 396 .. 348 396 .. 0.76 6 ? 1.0 0.0 6.9 1e+03 11 31 .. 450 470 .. 443 477 .. 0.75 7 ? 9.4 1.7 0.015 2.2 8 37 .. 490 528 .. 485 529 .. 0.76 8 ! 11.5 0.1 0.0034 0.51 6 38 .] 542 577 .. 537 577 .. 0.74 9 ? 1.8 0.0 3.9 5.9e+02 13 38 .] 606 625 .. 594 625 .. 0.71 10 ? 3.4 0.2 1.2 1.8e+02 9 36 .. 642 670 .. 628 672 .. 0.70 11 ? 2.6 0.1 2.1 3.2e+02 3 37 .. 678 713 .. 676 714 .. 0.65 Alignments for each domain: == domain 1 score: 7.6 bits; conditional E-value: 0.057 EESS..SS....EEEEEEETTSSEEEEE..ETTSEEEEE CS WD40 7 ltGH..ss....vtslafspdgawlasG..sdDgtvriW 37 ++GH s t++a+ + g++ a+G + + vr+W tr|H2L0C5|H2L0C5_CAEEL 53 FEGHliSQtkqqFTCVAVTSCGKYAATGetGHQPAVRLW 91 667776445667799**********9987756******* PP == domain 2 score: 4.2 bits; conditional E-value: 0.66 EEEEEEESS.SSEEEEEEETTSSEEEE.EE.TTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlas.Gs.dDgtvriWd 38 +++r+ H s+t ++f pd + l+s G+ D + Wd tr|H2L0C5|H2L0C5_CAEEL 103 RLVRSMQSHtVSITIVRFTPDDSTLISiGCqHDAQIFTWD 142 67899999*8889**********99854642388887776 PP == domain 3 score: 1.6 bits; conditional E-value: 4.4 S.....EEEEEEETTSSEEEEEETTSEEEEE CS WD40 12 s.....vtslafspdgawlasGsdDgtvriW 37 + v++l s d+++ ++ + ++v+ W tr|H2L0C5|H2L0C5_CAEEL 152 GklmspVNALTISFDSSMCVTVG-SKSVKYW 181 145555************99999.9999998 PP == domain 4 score: 4.1 bits; conditional E-value: 0.71 EEESS.SSEEEEEEETTSSE............EEEEETTSEEEEE CS WD40 6 tltGH.ssvtslafspdgaw............lasGsdDgtvriW 37 ++ G + v + + +g++ l+ G+ Dg vr++ tr|H2L0C5|H2L0C5_CAEEL 234 EFNGNkKYVKCYTWKESGDFkaiciarvpeglLV-GCSDGLVRLF 277 5778867799998888888888888887777444.644*****96 PP == domain 5 score: 20.4 bits; conditional E-value: 4.9e-06 SS.SSEEEEE.EETTSSE.....EEEEETTSEEEEEE CS WD40 9 GH.ssvtsla.fspdgaw.....lasGsdDgtvriWd 38 GH +sv+++ f+++++ l++G+ Dgt+r+W+ tr|H2L0C5|H2L0C5_CAEEL 360 GHtGSVNCIEpFPSSSPClpigtLITGGSDGTIRFWN 396 9*888*****9666666667677788977*******8 PP == domain 6 score: 1.0 bits; conditional E-value: 6.9 SSEEEEEEETTSSEEEEEETT CS WD40 11 ssvtslafspdgawlasGsdD 31 s+v + ++s+dg++l++G+ tr|H2L0C5|H2L0C5_CAEEL 450 SGVLCTRVSHDGRMLIAGTAT 470 34888889********99755 PP == domain 7 score: 9.4 bits; conditional E-value: 0.015 ESS.SSEEEEEEETTSSE........EEEEETTSEEEEE CS WD40 8 tGH.ssvtslafspdgaw........lasGsdDgtvriW 37 +H +vts++fs++ + lasG++D+ v+++ tr|H2L0C5|H2L0C5_CAEEL 490 NAHdHDVTSIDFSDHASTsshdhpifLASGGRDRFVHVF 528 578446*****66666666666676799*******9986 PP == domain 8 score: 11.5 bits; conditional E-value: 0.0034 EEESS.SSEEEEE.EETTSSEE.E.EEETTSEEEEEE CS WD40 6 tltGH.ssvtsla.fspdgawl.a.sGsdDgtvriWd 38 +l+GH s + s++ s +g+++ ++s D+++ iW+ tr|H2L0C5|H2L0C5_CAEEL 542 VLDGHqSAIKSIKfASNNGQLHlYtAAS-DRSLIIWK 577 789**877*****666666664342557.*******6 PP == domain 9 score: 1.8 bits; conditional E-value: 3.9 EEEEEEETTSSE.EEEEETTSEEEEEE CS WD40 13 vtslafspdgaw.lasGsdDgtvriWd 38 + ++ ++ +++G+ D+ +r +d tr|H2L0C5|H2L0C5_CAEEL 606 IKHV------DLfVVAGH-DRMLRQFD 625 5555......55256888.*****987 PP == domain 10 score: 3.4 bits; conditional E-value: 1.2 SSSS.EEEEEEETTSSEEE.EEETTSEEEE CS WD40 9 GHss.vtslafspdgawla.sGsdDgtvri 36 +Hs+ + +a +++g++ + +s D+ v++ tr|H2L0C5|H2L0C5_CAEEL 642 AHSGkILKVAIDHSGSYAIsVCS-DKFVYV 670 57336999*********662578.998876 PP == domain 11 score: 2.6 bits; conditional E-value: 2.1 EEEEEESS.SSEEEEEEETTSSEE.EEEETTSEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawl.asGsdDgtvriW 37 cl +l G + t+ fs+d + + ++ s +g++ iW tr|H2L0C5|H2L0C5_CAEEL 678 CLAVLCGFgAPATDATFSDDFKNViVTTS-NGSIFIW 713 55555555444566667777777515778.******* PP >> sp|G5EDR3|2AB1_CAEEL Serine/threonine-protein phosphatase 2A regulatory subunit sur-6 OS=Caenorhabditis elegans OX=6 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.7 0.0 0.00032 0.049 10 37 .. 63 93 .. 54 94 .. 0.82 2 ? 6.5 0.0 0.13 19 23 38 .] 148 162 .. 115 162 .. 0.81 3 ? 9.6 0.0 0.013 2 6 38 .] 211 244 .. 206 244 .. 0.81 4 ? 2.3 0.0 2.6 3.9e+02 14 36 .. 277 293 .. 263 295 .. 0.73 5 ! 11.3 0.1 0.0038 0.57 12 38 .] 327 352 .. 318 352 .. 0.90 6 ? 3.3 0.0 1.3 1.9e+02 3 32 .. 359 403 .. 357 406 .. 0.68 Alignments for each domain: == domain 1 score: 14.7 bits; conditional E-value: 0.00032 S..SS.EEEEEEETTSSEEEEEETTSEEEEE CS WD40 10 H..ss.vtslafspdgawlasGsdDgtvriW 37 H + ++++ fs+dg +la+G++ g v i+ sp|G5EDR3|2AB1_CAEEL 63 HteADvISCVEFSHDGEYLATGDKGGRVVIF 93 6433467***************988888875 PP == domain 2 score: 6.5 bits; conditional E-value: 0.13 SEEEEEETTSEEEEEE CS WD40 23 awlasGsdDgtvriWd 38 ++++s D+t+++W+ sp|G5EDR3|2AB1_CAEEL 148 NFILSTN-DKTIKLWK 162 5688666.*******6 PP == domain 3 score: 9.6 bits; conditional E-value: 0.013 EEE.SS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 6 tlt.GH.ssvtslafspdgawlasGsdDgtvriWd 38 ++ +H +v+s+++++d+ ++s++ D v +W+ sp|G5EDR3|2AB1_CAEEL 211 VYGnAHtYHVNSISVNSDQETFLSAD-DLRVNLWN 244 553377555*****9******99878.*******8 PP == domain 4 score: 2.3 bits; conditional E-value: 2.6 EEEEEETTSSEEE.EEETTSEEEE CS WD40 14 tslafspdgawla.sGsdDgtvri 36 t + +w++ s+s +g++r+ sp|G5EDR3|2AB1_CAEEL 277 TQC------NWFVySSS-KGSIRL 293 445......77655999.*****8 PP == domain 5 score: 11.3 bits; conditional E-value: 0.0038 SEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 12 svtslafspdgawlasGsdDgtvriWd 38 sv++++fs++g++l++ d tv++Wd sp|G5EDR3|2AB1_CAEEL 327 SVSDVKFSHNGRYLLT-RDYLTVKVWD 352 4999***********6.99*******9 PP == domain 6 score: 3.3 bits; conditional E-value: 1.3 EEEEEESSSSE.EEEE...............EETTSSEEEEEETTS CS WD40 3 clrtltGHssv.tsla...............fspdgawlasGsdDg 32 ++ t+ H+ t l+ +s d + +++Gs + sp|G5EDR3|2AB1_CAEEL 359 PVETYPVHNYLrTKLCalyendsifdkfecdWSGDDKHILTGS-YH 403 5666666666555555556666666666667999999999999.65 PP >> tr|O62477|O62477_CAEEL Uncharacterized protein OS=Caenorhabditis elegans OX=6239 GN=CELE_Y45F10D.7 PE=1 SV=6 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.6 0.1 4.5 6.7e+02 5 21 .. 77 94 .. 73 94 .. 0.80 2 ? 5.4 0.1 0.27 41 5 38 .] 225 259 .. 221 259 .. 0.83 3 ! 12.7 0.0 0.0014 0.21 10 37 .. 273 301 .. 264 301 .. 0.88 4 ? 6.9 0.0 0.091 14 7 38 .] 316 347 .. 311 347 .. 0.70 5 ? 1.9 0.0 3.5 5.2e+02 14 29 .. 431 446 .. 421 453 .. 0.81 6 ? 5.0 0.1 0.37 55 11 38 .] 500 527 .. 489 527 .. 0.85 7 ! 14.1 0.0 0.00049 0.073 12 38 .] 589 615 .. 576 615 .. 0.88 Alignments for each domain: == domain 1 score: 1.6 bits; conditional E-value: 4.5 EEEESS.SSEEEEEEETT CS WD40 5 rtltGH.ssvtslafspd 21 ++ +H +++tslaf++d tr|O62477|O62477_CAEEL 77 SVFAAHgTNITSLAFCRD 94 67889*878****99775 PP == domain 2 score: 5.4 bits; conditional E-value: 0.27 EEEESS.SSEEEEEEETTSSE.EEEEETTSEEEEEE CS WD40 5 rtltGH.ssvtslafspdgaw.lasGsdDgtvriWd 38 ++++ H +t +af +dg +++++++gt +Wd tr|O62477|O62477_CAEEL 225 TSFR-HdAKITNVAFRDDGEStMVTADKNGTMAVWD 259 5666.8455*****999999987899*********9 PP == domain 3 score: 12.7 bits; conditional E-value: 0.0014 SSS.EEEEEEETTSSEEEEEETTSEEEEE CS WD40 10 Hss.vtslafspdgawlasGsdDgtvriW 37 Hs+ +++l f p + ++s+s D+++r+W tr|O62477|O62477_CAEEL 273 HSDeINCLYFVPGEPIMLSASLDNSLRLW 301 8556************************* PP == domain 4 score: 6.9 bits; conditional E-value: 0.091 EESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 7 ltGH.ssvtslafspdgawlasGsdDgtvriWd 38 l+GH ++ s++f + +s+++Dg++r +d tr|O62477|O62477_CAEEL 316 LEGHsKPCASIKFVGKDHV-LSAGKDGSIRKYD 347 789*888667755555555.57888****9665 PP == domain 5 score: 1.9 bits; conditional E-value: 3.5 EEEEEETTSSEEEEEE CS WD40 14 tslafspdgawlasGs 29 t+l++sp g++++ G tr|O62477|O62477_CAEEL 431 TALCVSPCGNFVFIGY 446 78999******98773 PP == domain 6 score: 5.0 bits; conditional E-value: 0.37 SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 11 ssvtslafspdgawlasGsdDgtvriWd 38 s++tsl++++ g+ l+s + g++ +W+ tr|O62477|O62477_CAEEL 500 SPITSLSVDQRGKELMSTDAQGHILFWS 527 45**************9989*******5 PP == domain 7 score: 14.1 bits; conditional E-value: 0.00049 SEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 12 svtslafspdgawlasGsdDgtvriWd 38 v+++ fs+dg+wl+ ++ D +r++d tr|O62477|O62477_CAEEL 589 KVNAMTFSSDGKWLLVADNDSYIRVFD 615 599***********99999******98 PP >> tr|Q18403|Q18403_CAEEL Set1 WD40 repeat protein OS=Caenorhabditis elegans OX=6239 GN=swd-2.2 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.0 0.0 7.5e-07 0.00011 4 38 .] 105 140 .. 102 140 .. 0.88 2 ? 7.6 0.0 0.055 8.3 15 38 .] 151 180 .. 141 180 .. 0.74 3 ? 2.6 0.0 2.2 3.3e+02 14 29 .. 204 219 .. 188 226 .. 0.80 4 ? 7.2 0.0 0.073 11 17 38 .] 252 273 .. 234 273 .. 0.78 Alignments for each domain: == domain 1 score: 23.0 bits; conditional E-value: 7.5e-07 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +r + GH + vt++ +sp ++++s +D+t+r+Wd tr|Q18403|Q18403_CAEEL 105 IRYFQGHdKLVTGINVSPMDDMFLSVAEDKTIRLWD 140 67799**555**************9999*******9 PP == domain 2 score: 7.6 bits; conditional E-value: 0.055 EEE......EETTSSEEEEEETTSEEEEEE CS WD40 15 sla......fspdgawlasGsdDgtvriWd 38 l+ f+p+g ++a+G d++ ++++d tr|Q18403|Q18403_CAEEL 151 NLSatpiatFDPEGLLFAAGLDNNIIKLYD 180 4446677779**********88******98 PP == domain 3 score: 2.6 bits; conditional E-value: 2.2 EEEEEETTSSEEEEEE CS WD40 14 tslafspdgawlasGs 29 t+++fsp g++++ ++ tr|Q18403|Q18403_CAEEL 204 TAMRFSPCGKYIMICT 219 8999*******98775 PP == domain 4 score: 7.2 bits; conditional E-value: 0.073 EEETTSSEEEEEETTSEEEEEE CS WD40 17 afspdgawlasGsdDgtvriWd 38 +f p+++ ++ Gs Dg ++++d tr|Q18403|Q18403_CAEEL 252 SFTPESSHIMVGSSDGYIYFYD 273 4999****999*88*****998 PP >> tr|Q965W8|Q965W8_CAEEL Uncharacterized protein OS=Caenorhabditis elegans OX=6239 GN=CELE_Y39H10A.6 PE=1 SV=4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.5 0.2 2.1e-05 0.0031 8 38 .] 252 283 .. 245 283 .. 0.85 2 ! 24.9 0.1 1.9e-07 2.8e-05 3 38 .] 545 582 .. 543 582 .. 0.85 Alignments for each domain: == domain 1 score: 18.5 bits; conditional E-value: 2.1e-05 ESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 8 tGHss.vtslafspdgawlasGsdDgtvriWd 38 + H++ + +++fs++g+++asG++ +++ +W+ tr|Q965W8|Q965W8_CAEEL 252 DHHKFeIFCVKFSRNGKMMASGGKSNSITLWK 283 457555*************************6 PP == domain 2 score: 24.9 bits; conditional E-value: 1.9e-07 EEEEEESS.SSEEEEEEETTSSE.EEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgaw.lasGsdDgtvriWd 38 + ++l GH ++v+++a++p + l+s++ D t+r+W+ tr|Q965W8|Q965W8_CAEEL 545 PRYSLVGHrGHVNAVAWNPADPTmLVSCGADATIRVWS 582 56788999999*****99999995678999*******5 PP >> sp|Q21624|CORO_CAEEL Coronin-like protein cor-1 OS=Caenorhabditis elegans OX=6239 GN=cor-1 PE=2 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.4 0.1 9e-05 0.013 9 37 .. 77 107 .. 71 108 .. 0.82 2 ? 9.8 0.0 0.012 1.7 6 38 .] 124 158 .. 119 158 .. 0.79 3 ! 17.9 0.0 3.2e-05 0.0048 4 36 .. 165 198 .. 162 200 .. 0.89 Alignments for each domain: == domain 1 score: 16.4 bits; conditional E-value: 9e-05 SS.SSEEEEEEETTSSEE.EEEETTSEEEEE CS WD40 9 GH.ssvtslafspdgawl.asGsdDgtvriW 37 +H + +a+sp ++ + as+s+D t+++W sp|Q21624|CORO_CAEEL 77 AHkAPCLEVAWSPFNDNViASCSEDTTCKVW 107 6755567899*******72589********* PP == domain 2 score: 9.8 bits; conditional E-value: 0.012 EEESS.SSEEEEEEETTSSE..EEEEETTSEEEEEE CS WD40 6 tltGH.ssvtslafspdgaw..lasGsdDgtvriWd 38 +ltGH + v+ +a++p + l++G+ + +W+ sp|Q21624|CORO_CAEEL 124 ELTGHqKRVNTIAWHPVANNvlLTAGG-ENVMFMWN 158 699**999****999999994334777.88888886 PP == domain 3 score: 17.9 bits; conditional E-value: 3.2e-05 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvri 36 l +++GH + ++s+ f+ dg+ +++ ++D+++ri sp|Q21624|CORO_CAEEL 165 LLEISGHpDQIWSINFNFDGSQFVTTCKDKKIRI 198 66789**888**************9999*****9 PP >> tr|A5Z2V7|A5Z2V7_CAEEL Uncharacterized protein OS=Caenorhabditis elegans OX=6239 GN=CELE_F02E9.10 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.4 0.0 0.062 9.4 7 34 .. 136 183 .. 130 185 .. 0.68 2 ? 8.5 0.0 0.029 4.4 2 36 .. 192 227 .. 191 229 .. 0.87 3 ? 7.7 0.1 0.052 7.8 3 37 .. 244 281 .. 242 282 .. 0.75 4 ! 17.1 0.0 5.6e-05 0.0085 8 37 .. 294 324 .. 287 325 .. 0.85 Alignments for each domain: == domain 1 score: 7.4 bits; conditional E-value: 0.062 EESS.SS...................EEEEEEETTSSEEEEEETTSEE CS WD40 7 ltGH.ss...................vtslafspdgawlasGsdDgtv 34 ++GH + +++l++s+d ++la G Dg + tr|A5Z2V7|A5Z2V7_CAEEL 136 YSGHlNEiqhssneiirqepfptvkqISCLKYSRDAKYLAIGQLDGAI 183 5555544444445555555555555589************99668877 PP == domain 2 score: 8.5 bits; conditional E-value: 0.029 EEEEEEESSSS..EEEEEEETTSSEEEEEETTSEEEE CS WD40 2 qclrtltGHss..vtslafspdgawlasGsdDgtvri 36 ++ ++++ H s ++ + f p+ ++s++dD+ +++ tr|A5Z2V7|A5Z2V7_CAEEL 192 KNYHKYEVH-SmrIRKIEFLPNEERFLSACDDRLIKL 227 567899999.556************999999***997 PP == domain 3 score: 7.7 bits; conditional E-value: 0.052 EEEEEESS.SSEEEEE..EETTSSEEEEEETTSEEEEE CS WD40 3 clrtltGH.ssvtsla..fspdgawlasGsdDgtvriW 37 +r++++H +vt+l + g+ +as+s + iW tr|A5Z2V7|A5Z2V7_CAEEL 244 AIRVYSAHdAPVTGLTidEKSGGTRFASSSASSQIFIW 281 5799****888**9976533333447888889999999 PP == domain 4 score: 17.1 bits; conditional E-value: 5.6e-05 ESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 8 tGH.ssvtslafspdgawlasGsdDgtvriW 37 H s +++l+fsp ++ l+sG+dD + i+ tr|A5Z2V7|A5Z2V7_CAEEL 294 NEHtSTISALSFSPTSRHLLSGGDDAMILIY 324 479777*******************999887 PP >> tr|Q21934|Q21934_CAEEL Uncharacterized protein OS=Caenorhabditis elegans OX=6239 GN=CELE_R11D1.1 PE=1 SV=3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.9 0.2 3.9e-07 5.9e-05 3 38 .] 58 94 .. 57 94 .. 0.93 2 ? 0.8 0.0 8.1 1.2e+03 10 30 .. 114 135 .. 105 142 .. 0.79 3 ? 0.8 0.5 7.8 1.2e+03 13 37 .. 306 329 .. 288 330 .. 0.65 4 ! 18.2 0.0 2.5e-05 0.0037 2 38 .] 358 395 .. 357 395 .. 0.92 Alignments for each domain: == domain 1 score: 23.9 bits; conditional E-value: 3.9e-07 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 c++ + H +++++l+fs++ ++lasG+dD + r+W+ tr|Q21934|Q21934_CAEEL 58 CQKDVREHtGCINALQFSHNDRFLASGGDDMHGRVWN 94 7888999*777*************************8 PP == domain 2 score: 0.8 bits; conditional E-value: 8.1 S.SSEEEEEEETTSSEEEEEET CS WD40 10 H.ssvtslafspdgawlasGsd 30 H s++ sl f+ ++++l sG + tr|Q21934|Q21934_CAEEL 114 HrSNIFSLEFDLENRFLYSGER 135 7777**************9954 PP == domain 3 score: 0.8 bits; conditional E-value: 7.8 EEEEEEETTSSEEEEEETTSEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriW 37 + s+ f +d + a+Gsd ++iW tr|Q21934|Q21934_CAEEL 306 IKSMTFIDDYTV-ATGSDHWGIHIW 329 566656666666.89**87777777 PP == domain 4 score: 18.2 bits; conditional E-value: 2.5e-05 EEEEEEESSSSE.EEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGHssv.tslafspdgawlasGsdDgtvriWd 38 + l++l+GH sv + ++fs+++++l+s++ ++ ++W+ tr|Q21934|Q21934_CAEEL 358 KELTVLRGHRSVpNQVRFSQHNNLLVSSGVENSFKLWS 395 67899****8899*************9999*******5 PP >> sp|Q09309|RBBP5_CAEEL Retinoblastoma-binding protein homolog 5 OS=Caenorhabditis elegans OX=6239 GN=rbbp-5 PE=3 SV=3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.2 0.0 0.017 2.6 13 38 .] 28 53 .. 15 53 .. 0.84 2 ! 21.8 0.1 1.8e-06 0.00027 4 38 .] 60 95 .. 57 95 .. 0.89 3 ? 6.9 0.0 0.095 14 14 38 .] 159 183 .. 148 183 .. 0.88 4 ? 1.1 0.1 6.3 9.5e+02 16 37 .. 256 278 .. 249 279 .. 0.79 5 ? 4.4 0.0 0.56 85 2 37 .. 284 320 .. 283 321 .. 0.83 Alignments for each domain: == domain 1 score: 9.2 bits; conditional E-value: 0.017 EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriWd 38 ++++f++ g+ +a G+ Dg v i+d sp|Q09309|RBBP5_CAEEL 28 ANCCKFNRWGSIVAVGCTDGRVLIYD 53 589*************99******98 PP == domain 2 score: 21.8 bits; conditional E-value: 1.8e-06 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 rt+++H +v++l++s+dg+ l+++s D+++ ++d sp|Q09309|RBBP5_CAEEL 60 ARTFSAHcLPVSCLSWSRDGRKLLTSSADNSIAMFD 95 589****777****************99***98776 PP == domain 3 score: 6.9 bits; conditional E-value: 0.095 EEEEEETTSSEEEEEETTSEEEEEE CS WD40 14 tslafspdgawlasGsdDgtvriWd 38 +++++++ g+++++G+ +g++ i++ sp|Q09309|RBBP5_CAEEL 159 SCVSYDRKGKYIIAGTGKGKLLIYN 183 69*************66****9997 PP == domain 4 score: 1.1 bits; conditional E-value: 6.3 EEEETTSSEEEEE..ETTSEEEEE CS WD40 16 lafspdgawlasG..sdDgtvriW 37 +++++dg +++ G ++ ++++iW sp|Q09309|RBBP5_CAEEL 256 VCTDSDGLYVC-GasTKAHSLYIW 278 78999999*85.532589999999 PP == domain 5 score: 4.4 bits; conditional E-value: 0.56 EEEEEEESSSS..EEEEEEETTSSEEEEEETTSEEEEE CS WD40 2 qclrtltGHss..vtslafspdgawlasGsdDgtvriW 37 +++++l G ++ +++++p + ++s gtv +W sp|Q09309|RBBP5_CAEEL 284 SLIKILHGNKGeaLLDVQWHPTRPIILSIA-QGTVSMW 320 678889999555789**********99659.9999999 PP >> sp|P42000|UTP18_CAEEL U3 small nucleolar RNA-associated protein 18 homolog OS=Caenorhabditis elegans OX=6239 GN=B028 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.3 0.0 1.3 2e+02 17 36 .. 218 237 .. 197 237 .. 0.78 2 ! 10.0 0.4 0.0098 1.5 4 36 .. 291 325 .. 288 327 .. 0.76 3 ? 8.5 0.0 0.03 4.5 13 36 .. 350 375 .. 337 376 .. 0.84 4 ! 13.6 0.0 0.00073 0.11 13 37 .. 397 421 .. 381 422 .. 0.84 Alignments for each domain: == domain 1 score: 3.3 bits; conditional E-value: 1.3 EEETTSSEEE.EEETTSEEEE CS WD40 17 afspdgawla.sGsdDgtvri 36 a s+d+++la +G+ + ++++ sp|P42000|UTP18_CAEEL 218 AISHDSQFLAiAGH-NSHIYV 237 589*****985667.999975 PP == domain 2 score: 10.0 bits; conditional E-value: 0.0098 EEEEESSSSE..EEEEEETTSSEEEEEETTSEEEE CS WD40 4 lrtltGHssv..tslafspdgawlasGsdDgtvri 36 ++t+t + v t la s++g+++a+Gsd g v + sp|P42000|UTP18_CAEEL 291 QHTFTDDGAVhgTTLAISQHGDYFATGSDTGIVNV 325 67776333388899**************7776666 PP == domain 3 score: 8.5 bits; conditional E-value: 0.03 EEEEEEETTSSEEEEEE..TTSEEEE CS WD40 13 vtslafspdgawlasGs..dDgtvri 36 v+s+af++d +++a +s +D+++r+ sp|P42000|UTP18_CAEEL 350 VSSIAFNSDAQLMAICSnvKDNHLRL 375 88999*********999667****97 PP == domain 4 score: 13.6 bits; conditional E-value: 0.00073 EEEEEEETTSSEEEEEETTSEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriW 37 +++ fsp+g ++a G dDg ++++ sp|P42000|UTP18_CAEEL 397 ARCVEFSPNGGYMAVGNDDGRLHVF 421 479*************99***9986 PP >> tr|J7S122|J7S122_CAEEL RaBConnectin related OS=Caenorhabditis elegans OX=6239 GN=rbc-1 PE=1 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.0 0.0 0.18 27 17 37 .. 186 207 .. 153 207 .. 0.85 2 ? 0.9 0.0 7.2 1.1e+03 10 38 .] 226 264 .. 220 264 .. 0.74 3 ? 0.8 0.0 7.6 1.1e+03 24 37 .. 574 587 .. 561 588 .. 0.82 4 ? 2.2 0.0 2.8 4.2e+02 23 37 .. 939 954 .. 918 955 .. 0.74 5 ! 14.2 0.0 0.00045 0.068 10 38 .] 2746 2775 .. 2739 2775 .. 0.87 6 ? 5.5 0.0 0.27 40 10 37 .. 2791 2818 .. 2781 2819 .. 0.83 7 ? 1.2 0.1 5.8 8.8e+02 6 38 .] 2832 2869 .. 2827 2869 .. 0.67 8 ? 7.3 0.1 0.069 10 3 38 .] 2878 2914 .. 2876 2914 .. 0.92 9 ? 8.7 0.1 0.025 3.8 12 38 .] 2929 2958 .. 2918 2958 .. 0.76 Alignments for each domain: == domain 1 score: 6.0 bits; conditional E-value: 0.18 EEETTSSEEE.EEETTSEEEEE CS WD40 17 afspdgawla.sGsdDgtvriW 37 ++spdg +la sG++D+ ++i+ tr|J7S122|J7S122_CAEEL 186 RYSPDGYYLAlSGDRDCFIKIF 207 49******988*********96 PP == domain 2 score: 0.9 bits; conditional E-value: 7.2 S.SSEEEEEEETTSSE.........EEEE.ETTSEEEEEE CS WD40 10 H.ssvtslafspdgaw.........lasG.sdDgtvriWd 38 H +v+++ + + g++ l+ + ++D+t riW+ tr|J7S122|J7S122_CAEEL 226 HpAPVCGFEWRKTGRYmprkcispiLM-SwCEDRTSRIWK 264 766788888888888888876666555.5567*******6 PP == domain 3 score: 0.8 bits; conditional E-value: 7.6 EEEEEETTSEEEEE CS WD40 24 wlasGsdDgtvriW 37 +++++d+gt+ +W tr|J7S122|J7S122_CAEEL 574 HVLTSHDNGTLNLW 587 46699********* PP == domain 4 score: 2.2 bits; conditional E-value: 2.8 SE.EEEEETTSEEEEE CS WD40 23 aw.lasGsdDgtvriW 37 ++ l+s++ D +vr+W tr|J7S122|J7S122_CAEEL 939 PYvLVSSDNDDSVRFW 954 452456667******* PP == domain 5 score: 14.2 bits; conditional E-value: 0.00045 S.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 10 H.ssvtslafspdgawlasGsdDgtvriWd 38 H +v+ ++ +p+ ++ ++Gs Dg++++W+ tr|J7S122|J7S122_CAEEL 2746 HiPGVRRIDSHPHAPFYVTGSSDGSIKVWK 2775 655699**********999*99*******6 PP == domain 6 score: 5.5 bits; conditional E-value: 0.27 SSSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 10 HssvtslafspdgawlasGsdDgtvriW 37 H v+ +afs +g+ +a+ + Dg + +W tr|J7S122|J7S122_CAEEL 2791 HAKVSKIAFSCNGNKFAAVDGDGMLCLW 2818 55599***********97755******* PP == domain 7 score: 1.2 bits; conditional E-value: 5.8 EEESS.SSEEEEEEETTSSE..EEEE..ETTSEEEEEE CS WD40 6 tltGH.ssvtslafspdgaw..lasG..sdDgtvriWd 38 + + H +s t+++f ++a l++G s D ++ +Wd tr|J7S122|J7S122_CAEEL 2832 SQRCHnKSATDVRFLGHSASvlLTAGssSLDYNLGLWD 2869 557898888888866666663245673246****9998 PP == domain 8 score: 7.3 bits; conditional E-value: 0.069 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +++++ +H + t+ + p+++ ++sG++ g + +Wd tr|J7S122|J7S122_CAEEL 2878 LVHSWVAHpEGATCALYVPNQQTIFSGGRHGEICLWD 2914 6899999987799999********************9 PP == domain 9 score: 8.7 bits; conditional E-value: 0.025 S...EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 12 s...vtslafspdgawlasGsdDgtvriWd 38 v la+++ +++++sGs g ++iW+ tr|J7S122|J7S122_CAEEL 2929 QmhvVKTLATDSAQDLIVSGSSEGDIKIWS 2958 24546899999999******99*******5 PP >> tr|Q95XR3|Q95XR3_CAEEL Uncharacterized protein OS=Caenorhabditis elegans OX=6239 GN=CELE_Y39G10AR.9 PE=1 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.7 0.0 0.00031 0.046 3 37 .. 163 198 .. 161 198 .. 0.88 2 ! 17.6 0.1 3.9e-05 0.0059 4 38 .] 206 241 .. 205 241 .. 0.78 3 ? 2.9 0.0 1.8 2.6e+02 7 35 .. 383 411 .. 378 414 .. 0.67 Alignments for each domain: == domain 1 score: 14.7 bits; conditional E-value: 0.00031 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 +l++ltGH +++ + + p+g ++ G++D +r+W tr|Q95XR3|Q95XR3_CAEEL 163 TLTELTGHtMDIYRCMYFPSGLVVIGGGMDMAIRVW 198 6889****888*6666********98899******* PP == domain 2 score: 17.6 bits; conditional E-value: 3.9e-05 EEEEESS.SSEEEEEEETTSSE.....EEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgaw.....lasGsdDgtvriWd 38 ++t+ GH + vt++ ++s+s Dgtvr+W+ tr|Q95XR3|Q95XR3_CAEEL 206 QKTFVGHtKAVTGFGI-----IgvgreFLSCSNDGTVRFWS 241 6899***999998843.....244444779999*******5 PP == domain 3 score: 2.9 bits; conditional E-value: 1.8 EESS..SSEEEEEEETTSSEEEEEETTSEEE CS WD40 7 ltGH..ssvtslafspdgawlasGsdDgtvr 35 ltG +v+++a + + + ++++Dg++r tr|Q95XR3|Q95XR3_CAEEL 383 LTGAdcEPVYDMAIYQKNIY--TCCRDGKIR 411 56664333777765555555..8999****9 PP >> tr|O45087|O45087_CAEEL DYnein Chain, light Intermediate OS=Caenorhabditis elegans OX=6239 GN=dyci-1 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.9 0.0 0.044 6.6 11 38 .] 336 364 .. 327 364 .. 0.81 2 ? 4.1 0.1 0.74 1.1e+02 8 38 .] 382 415 .. 376 415 .. 0.70 3 ! 11.9 2.0 0.0025 0.38 7 38 .] 479 517 .. 474 517 .. 0.66 4 ! 11.5 0.1 0.0033 0.49 5 38 .] 525 560 .. 521 560 .. 0.85 5 ? 9.0 0.0 0.021 3.1 14 38 .] 584 608 .. 570 608 .. 0.87 Alignments for each domain: == domain 1 score: 7.9 bits; conditional E-value: 0.044 SSEEEEEEETTSSEEE.EEETTSEEEEEE CS WD40 11 ssvtslafspdgawla.sGsdDgtvriWd 38 s + s+af + +a l+ +G++ g + +Wd tr|O45087|O45087_CAEEL 336 SEIQSVAFARFHAHLLlAGCESGQICVWD 364 448899899999996449**********9 PP == domain 2 score: 4.1 bits; conditional E-value: 0.74 ESSSS.EEEEE..EETTSSEEEEEETTSEEEEEE CS WD40 8 tGHss.vtsla..fspdgawlasGsdDgtvriWd 38 +H+ v++la ++ + ++s s+Dg + W+ tr|O45087|O45087_CAEEL 382 QAHTYtVSCLAvvGTKNAHNFVSLSRDGRICSWN 415 57833599998875555555665588*****998 PP == domain 3 score: 11.9 bits; conditional E-value: 0.0025 EESS.SSEEEEE.......EETTSSEEEEEETTSEEEEEE CS WD40 7 ltGH.ssvtsla.......fspdgawlasGsdDgtvriWd 38 ++GH + t++ ++ ++ ++ s+s D tv++W+ tr|O45087|O45087_CAEEL 479 YKGHsGTLTGIEfhrasgvVDFSHLFI-SSSHDWTVKLWS 517 899944489998555555444444445.5555*******5 PP == domain 4 score: 11.5 bits; conditional E-value: 0.0033 EEEESSSS..EEEEEEETTSSEEEEE.ETTSEEEEEE CS WD40 5 rtltGHss..vtslafspdgawlasG.sdDgtvriWd 38 +++ H + v ++a+sp ++ ++++ + Dg++ +W+ tr|O45087|O45087_CAEEL 525 FSFESH-PdlVLDVAWSPVHPAVFASiDADGNIFVWN 560 678999.3469************988877*******8 PP == domain 5 score: 9.0 bits; conditional E-value: 0.021 EEEEEETTSSEEEEEETTSEEEEEE CS WD40 14 tslafspdgawlasGsdDgtvriWd 38 + l +spdg+ ++ G+d g v+++d tr|O45087|O45087_CAEEL 584 NRLIWSPDGKHVFVGDDEGRVHMYD 608 6788******************998 PP >> tr|Q9U1R7|Q9U1R7_CAEEL Actin-related protein 2/3 complex subunit OS=Caenorhabditis elegans OX=6239 GN=arx-3 PE=1 SV= # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.4 0.5 0.27 41 12 37 .. 12 41 .. 5 43 .. 0.74 2 ! 17.1 0.9 5.5e-05 0.0083 1 37 [. 48 85 .. 48 86 .. 0.89 3 ! 16.2 0.1 0.00011 0.016 12 37 .. 150 175 .. 141 176 .. 0.89 4 ? 7.7 0.2 0.052 7.8 6 35 .. 203 232 .. 198 235 .. 0.74 5 ? 6.2 0.1 0.15 23 24 38 .] 346 360 .. 323 360 .. 0.64 Alignments for each domain: == domain 1 score: 5.4 bits; conditional E-value: 0.27 S....EEEEEEETTSSEEE.EEETTSEEEEE CS WD40 12 s....vtslafspdgawla.sGsdDgtvriW 37 + +t+ a+++d + +a s+s + ++i+ tr|Q9U1R7|Q9U1R7_CAEEL 12 FgigpITCHAWNKDRTQIAvSAS-SNDIHIF 41 334459***********984556.7777775 PP == domain 2 score: 17.1 bits; conditional E-value: 5.5e-05 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 +q ++tl+ H +vt+l++ + ++s+s D++ +W tr|Q9U1R7|Q9U1R7_CAEEL 48 WQSIHTLSEHdLPVTGLDWGTKTNRIVSCSQDKNAFVW 85 6889******666****88888888************9 PP == domain 3 score: 16.2 bits; conditional E-value: 0.00011 SEEEEEEETTSSEEEEEETTSEEEEE CS WD40 12 svtslafspdgawlasGsdDgtvriW 37 vt+l++++++ +la Gs D ++r++ tr|Q9U1R7|Q9U1R7_CAEEL 150 TVTCLDWHSNNVLLAVGSCDFKCRVF 175 49***************99*****97 PP == domain 4 score: 7.7 bits; conditional E-value: 0.052 EEESSSSEEEEEEETTSSEEE.EEETTSEEE CS WD40 6 tltGHssvtslafspdgawla.sGsdDgtvr 35 +++ ++v+ +afsp+g la ++ D +v tr|Q9U1R7|Q9U1R7_CAEEL 203 EYSVGGWVHRVAFSPSGCRLAfVSH-DSSVS 232 55533369***********986677.99986 PP == domain 5 score: 6.2 bits; conditional E-value: 0.15 EEEEEETTSEEEEEE CS WD40 24 wlasGsdDgtvriWd 38 +++++ Dg v +Wd tr|Q9U1R7|Q9U1R7_CAEEL 346 KFTTCGTDGIVALWD 360 2467777*******9 PP >> tr|G5EFY6|G5EFY6_CAEEL Yeast SEC homolog OS=Caenorhabditis elegans OX=6239 GN=sec-31 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.2 0.0 0.66 1e+02 14 38 .] 76 101 .. 62 101 .. 0.68 2 ! 19.5 0.5 9.6e-06 0.0014 10 38 .] 120 149 .. 112 149 .. 0.86 3 ! 20.0 0.4 6.8e-06 0.001 3 38 .] 248 285 .. 246 285 .. 0.79 Alignments for each domain: == domain 1 score: 4.2 bits; conditional E-value: 0.66 EEEEEETTSSEEEEE.ETTSEEEEEE CS WD40 14 tslafspdgawlasG.sdDgtvriWd 38 tsl+ + + + +++G ++Dgtv ++d tr|G5EFY6|G5EFY6_CAEEL 76 TSLCSDAHPNGIIAGgTEDGTVVFFD 101 666644444444456269****9987 PP == domain 2 score: 19.5 bits; conditional E-value: 9.6e-06 S.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 10 H.ssvtslafspdgawlasGsdDgtvriWd 38 H ++v +++s+dg+w+asG+ g + +Wd tr|G5EFY6|G5EFY6_CAEEL 120 HhGHVLTIDVSRDGRWMASGGGSGQILLWD 149 3355****************88*******9 PP == domain 3 score: 20.0 bits; conditional E-value: 6.8e-06 EEEEEESS.SSEEEEEEETTSSEEE..EEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawla..sGsdDgtvriWd 38 ++++++ H ++ts+++++ + l+ sG+ Dg v iW+ tr|G5EFY6|G5EFY6_CAEEL 248 PVKEYRHHnMGITSVDWNKADDRLVisSGC-DGQVVIWN 285 7899**99666****877777776543667.*******8 PP >> tr|Q18404|Q18404_CAEEL Set1 WD40 repeat protein OS=Caenorhabditis elegans OX=6239 GN=swd-2.1 PE=1 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.0 0.0 3.3 5e+02 13 36 .. 31 53 .. 19 55 .. 0.73 2 ? 8.5 0.0 0.029 4.4 4 38 .] 104 140 .. 101 140 .. 0.77 3 ? 7.3 0.0 0.07 11 16 38 .] 158 180 .. 146 180 .. 0.86 4 ? 3.2 0.1 1.4 2.1e+02 14 29 .. 203 222 .. 188 233 .. 0.64 5 ! 13.7 0.0 0.00067 0.1 2 37 .. 232 271 .. 231 272 .. 0.89 Alignments for each domain: == domain 1 score: 2.0 bits; conditional E-value: 3.3 EEEEEEETTSSEEEEEETTSEEEE CS WD40 13 vtslafspdgawlasGsdDgtvri 36 +la+s+dg+ l+ + v + tr|Q18404|Q18404_CAEEL 31 LLDLAYSDDGNNLIVSA-EDVVLV 53 56899*******98766.555555 PP == domain 2 score: 8.5 bits; conditional E-value: 0.029 EEEEESS.SSEEEEEEETTSSE.EEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgaw.lasGsdDgtvriWd 38 +r ++GH +v+ ++++p + ++s+s Dg +r++d tr|Q18404|Q18404_CAEEL 104 VRYFDGHrMPVNFIRTNPKDREkFLSSSVDGEIRMFD 140 66789998889999955555554779999*****998 PP == domain 3 score: 7.3 bits; conditional E-value: 0.07 EEEETTSSEEEEEETTSEEEEEE CS WD40 16 lafspdgawlasGsdDgtvriWd 38 +af+pdg ++a +++ t++++d tr|Q18404|Q18404_CAEEL 158 IAFDPDGILFAVATKSDTIKLFD 180 478********9********998 PP == domain 4 score: 3.2 bits; conditional E-value: 1.4 EEEEEETTSSEEE....EEE CS WD40 14 tslafspdgawla....sGs 29 +++ fsp g++++ +Gs tr|Q18404|Q18404_CAEEL 203 SDIEFSPCGKFIListtAGS 222 5788*******852221244 PP == domain 5 score: 13.7 bits; conditional E-value: 0.00067 EEEEEEESS.SS..E.EEEEEETTSSEEEEEETTSEEEEE CS WD40 2 qclrtltGH.ss..v.tslafspdgawlasGsdDgtvriW 37 +++++++ H ++ + ++s d+ +++ Gs D++v+i+ tr|Q18404|Q18404_CAEEL 232 TLIHSFSQHkNPnkIpLRASVSTDSGFVMVGSADRNVYIY 271 689******877888888889*****************98 PP >> sp|O45933|SEH1_CAEEL Nucleoporin SEH1 OS=Caenorhabditis elegans OX=6239 GN=npp-18 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.6 0.1 2.1e-06 0.00031 3 38 .] 9 45 .. 7 45 .. 0.87 2 ! 14.8 2.0 0.0003 0.045 5 37 .. 56 91 .. 51 92 .. 0.78 3 ? 4.1 0.0 0.71 1.1e+02 10 37 .. 118 148 .. 110 149 .. 0.72 4 ? 4.8 0.1 0.43 64 23 38 .] 302 317 .. 282 317 .. 0.73 Alignments for each domain: == domain 1 score: 21.6 bits; conditional E-value: 2.1e-06 EEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 + +t +H + +++++f+p+g+ +a++ D t iWd sp|O45933|SEH1_CAEEL 9 PFQTVGAHRDlIHCVSFDPHGRRMATCASDMTMAIWD 45 6788999*445**************9955*******9 PP == domain 2 score: 14.8 bits; conditional E-value: 0.0003 EEEESS.SSEEEEEEETTSSE........EEEEETTSEEEEE CS WD40 5 rtltGH.ssvtslafspdgaw........lasGsdDgtvriW 37 +++ H + v+ + w +a++s+D+t+ iW sp|O45933|SEH1_CAEEL 56 AHWKCHgGAVWRV------IWahpefgqiVATCSYDRTIVIW 91 5788996669999......666666666599*********** PP == domain 3 score: 4.1 bits; conditional E-value: 0.71 S.SSEEEEEEETTSSEE..EEEETTSEEEEE CS WD40 10 H.ssvtslafspdgawl..asGsdDgtvriW 37 s+vt+++fsp + l as+ gtvri+ sp|O45933|SEH1_CAEEL 118 NrSDVTDICFSPRHLGLmmASCNVLGTVRIY 148 5578*******98887633566677787776 PP == domain 4 score: 4.8 bits; conditional E-value: 0.43 SEEEEEETTSEEEEEE CS WD40 23 awlasGsdDgtvriWd 38 + ++s s Dgt+r W+ sp|O45933|SEH1_CAEEL 302 SVISSTSLDGTLRSWK 317 33666689*******5 PP >> tr|G5EGF0|G5EGF0_CAEEL CHE-2 protein OS=Caenorhabditis elegans OX=6239 GN=che-2 PE=2 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 13.2 0.1 0.00093 0.14 8 38 .] 101 132 .. 94 132 .. 0.83 2 ! 21.9 0.6 1.8e-06 0.00026 7 38 .] 182 214 .. 178 214 .. 0.90 3 ? 9.9 0.2 0.01 1.6 8 35 .. 224 251 .. 217 256 .. 0.77 4 ? 6.1 0.0 0.16 25 12 29 .. 269 286 .. 259 294 .. 0.83 Alignments for each domain: == domain 1 score: 13.2 bits; conditional E-value: 0.00093 ESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 8 tGHss.vtslafspdgawlasGsdDgtvriWd 38 ++H++ + ++++dg+ l+s+++Dg v++W+ tr|G5EGF0|G5EGF0_CAEEL 101 DAHNGaALCARWNSDGTGLLSSGEDGFVKMWS 132 57855346889********************5 PP == domain 2 score: 21.9 bits; conditional E-value: 1.8e-06 EESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 7 ltGHss.vtslafspdgawlasGsdDgtvriWd 38 +++H++ + +++++p ++++++G++D + ++Wd tr|G5EGF0|G5EGF0_CAEEL 182 WKAHDGiILCCDWNPTSDLIVTGGEDLKFKVWD 214 579*5547************************9 PP == domain 3 score: 9.9 bits; conditional E-value: 0.01 ESS.SSEEEEEEETTSSEEEEEETTSEEE CS WD40 8 tGH.ssvtslafspdgawlasGsdDgtvr 35 + H ++ts++++ dg+++a Gs + +r tr|G5EGF0|G5EGF0_CAEEL 224 SVHdYPITSISWNTDGTLFAVGS-HNILR 251 568445****************9.55555 PP == domain 4 score: 6.1 bits; conditional E-value: 0.16 SEEEEEEETTSSEEEEEE CS WD40 12 svtslafspdgawlasGs 29 sv +l++spdg+ la G+ tr|G5EGF0|G5EGF0_CAEEL 269 SVMALSWSPDGTQLAVGT 286 5999**********9885 PP >> sp|Q19317|NBEA_CAEEL Putative neurobeachin homolog OS=Caenorhabditis elegans OX=6239 GN=sel-2 PE=2 SV=3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.0 0.3 6e-05 0.009 7 37 .. 2264 2298 .. 2258 2299 .. 0.79 2 ! 15.1 0.1 0.00023 0.035 4 36 .. 2321 2354 .. 2318 2355 .. 0.91 3 ? 8.0 0.0 0.043 6.5 13 37 .. 2410 2434 .. 2359 2435 .. 0.91 Alignments for each domain: == domain 1 score: 17.0 bits; conditional E-value: 6e-05 EESSSS.EEEEE....EETTSSEEEEEETTSEEEEE CS WD40 7 ltGHss.vtsla....fspdgawlasGsdDgtvriW 37 + GH++ vt++a + ++++Gs+D+tv +W sp|Q19317|NBEA_CAEEL 2264 Y-GHGDvVTCIArsetSLFSDCYVVTGSMDCTVVLW 2298 4.9*7757****7777666666699*********** PP == domain 2 score: 15.1 bits; conditional E-value: 0.00023 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvri 36 +ltGH s+++l++s ++ +++sG++Dg + i sp|Q19317|NBEA_CAEEL 2321 RSILTGHeASISALCVSAEHGLVVSGCEDGVILI 2354 5789***999********************9987 PP == domain 3 score: 8.0 bits; conditional E-value: 0.043 EEEEEEETTSSEEEEEETTSEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriW 37 + ++ + +dg + ++G +g + iW sp|Q19317|NBEA_CAEEL 2410 IECVTVTRDGEFAVTGAVNGRINIW 2434 89999******************** PP >> sp|Q9U1Q0|EIPR1_CAEEL EARP-interacting protein 1 OS=Caenorhabditis elegans OX=6239 GN=eipr-1 PE=2 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.7 0.1 0.94 1.4e+02 6 38 .] 58 99 .. 55 99 .. 0.62 2 ! 21.5 0.1 2.2e-06 0.00033 8 38 .] 205 237 .. 198 237 .. 0.75 3 ? 9.2 0.7 0.017 2.6 7 35 .. 250 278 .. 243 279 .. 0.74 4 ? 6.4 0.0 0.13 20 8 33 .. 318 345 .. 312 348 .. 0.79 Alignments for each domain: == domain 1 score: 3.7 bits; conditional E-value: 0.94 EEESS..SSEEEEEEETTSSEEE.E........EETTSEEEEEE CS WD40 6 tltGH..ssvtslafspdgawla.s........GsdDgtvriWd 38 t++ H + v+++a +p ++ ++ + G+ +++ iW+ sp|Q9U1Q0|EIPR1_CAEEL 58 TFR-HpaGEVRAIAAHPTKSTILaTctadfsslGG-THSITIWN 99 565.653449****999999965254444444444.77777775 PP == domain 2 score: 21.5 bits; conditional E-value: 2.2e-06 ESS..SSEEEEEEETTSSEE.EEEETTSEEEEEE CS WD40 8 tGH..ssvtslafspdgawl.asGsdDgtvriWd 38 ++H + s++f+p+ + + a+++dDg vriWd sp|Q9U1Q0|EIPR1_CAEEL 205 DAHihRTI-SMDFNPNLQHViATCGDDGYVRIWD 237 56732236.888*******736999********9 PP == domain 3 score: 9.2 bits; conditional E-value: 0.017 EESSSSEEEEEEETTSSEEE.EEETTSEEE CS WD40 7 ltGHssvtslafspdgawla.sGsdDgtvr 35 +H +v+s++f+p ++ l+ +G+ D +v sp|Q9U1Q0|EIPR1_CAEEL 250 PHAH-WVWSVRFHPVHDQLLlTGGSDASVV 278 2355.8***********9754997798885 PP == domain 4 score: 6.4 bits; conditional E-value: 0.13 ESS.SSEEEEEEETTSSEEEEE.ETTSE CS WD40 8 tGH.ssvtslafspdgawlasG.sdDgt 33 + H +sv+++a+s+ +w +++ s+Dg sp|Q9U1Q0|EIPR1_CAEEL 318 DEHeDSVYACAWSSADPWTFASlSYDGR 345 579888************5556677885 PP >> tr|Q95XL8|Q95XL8_CAEEL CHromatin Assembly Factor OS=Caenorhabditis elegans OX=6239 GN=chaf-2 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 11.4 0.0 0.0034 0.51 8 38 .] 74 107 .. 69 107 .. 0.82 2 ! 17.2 0.3 5.1e-05 0.0077 9 36 .. 134 162 .. 129 164 .. 0.86 3 ? 4.6 0.0 0.5 75 14 27 .. 181 194 .. 172 201 .. 0.87 4 ? 2.5 0.0 2.3 3.5e+02 17 27 .. 251 265 .. 235 276 .. 0.67 5 ? 3.4 0.2 1.2 1.7e+02 10 29 .. 359 379 .. 346 386 .. 0.82 Alignments for each domain: == domain 1 score: 11.4 bits; conditional E-value: 0.0034 ESSSS.EEEEEEETTSSE..EEEEETTSEEEEEE CS WD40 8 tGHss.vtslafspdgaw..lasGsdDgtvriWd 38 H++ ++ ++fsp++ lasG+ g + iW+ tr|Q95XL8|Q95XL8_CAEEL 74 VFHNHaINQVKFSPSKEHelLASGDCEGRITIWK 107 457555************98899966*******5 PP == domain 2 score: 17.2 bits; conditional E-value: 5.1e-05 SS.SSEEEEEEETTSSEEEEEETTSEEEE CS WD40 9 GH.ssvtslafspdgawlasGsdDgtvri 36 H s+v++l+++p+g+ las s D+t+ + tr|Q95XL8|Q95XL8_CAEEL 134 NHnSDVNALCWDPSGTQLASVSNDHTLAV 162 49778**************9999**9855 PP == domain 3 score: 4.6 bits; conditional E-value: 0.5 EEEEEETTSSEEEE CS WD40 14 tslafspdgawlas 27 ++++++p+g+++a+ tr|Q95XL8|Q95XL8_CAEEL 181 NGVCWDPSGKYIAT 194 79*********985 PP == domain 4 score: 2.5 bits; conditional E-value: 2.3 E....EETTSSEEEE CS WD40 17 a....fspdgawlas 27 + fsp+g ++a+ tr|Q95XL8|Q95XL8_CAEEL 251 QralgFSPNGEFIAA 265 34444*******986 PP == domain 5 score: 3.4 bits; conditional E-value: 1.2 S.SSEEEEEEETTSSEEEEEE CS WD40 10 H.ssvtslafspdgawlasGs 29 H + t+ +fs+dg+ l+ +s tr|Q95XL8|Q95XL8_CAEEL 359 HlNALTDASFSHDGRVLVVSS 379 777889999*******98776 PP >> tr|O16302|O16302_CAEEL Uncharacterized protein OS=Caenorhabditis elegans OX=6239 GN=CELE_T05C3.2 PE=4 SV=4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.3 0.2 2.4e-05 0.0036 2 38 .] 1325 1364 .. 1324 1364 .. 0.80 2 ? 2.3 0.0 2.7 4e+02 4 28 .. 1636 1667 .. 1633 1675 .. 0.70 3 ! 11.9 0.1 0.0025 0.37 2 34 .. 1680 1712 .. 1679 1713 .. 0.92 Alignments for each domain: == domain 1 score: 18.3 bits; conditional E-value: 2.4e-05 EEEEEEESS.SSEEEEE..EETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtsla..fspdgawlasGsdDgtvriWd 38 ++lr+l++H + + l+ ++ ++ l+s+s D+t++iW+ tr|O16302|O16302_CAEEL 1325 ELLRSLDAHfGRILNLDsvSHQGQNILISSSLDHTIKIWN 1364 5799*****66698888855556666789999*******8 PP == domain 2 score: 2.3 bits; conditional E-value: 2.7 EEEEESS..SSEEEEE..EETTSSEEE...EE CS WD40 4 lrtltGH..ssvtsla..fspdgawla...sG 28 +tl G +v+++ fsp+ ++++ sG tr|O16302|O16302_CAEEL 1636 AKTLIGNvtEGVNDVTcsFSPNAQYVFynhSG 1667 578888874447777777*******8655555 PP == domain 3 score: 11.9 bits; conditional E-value: 0.0025 EEEEEEESSSSEEEEEEETTSSEEEEEETTSEE CS WD40 2 qclrtltGHssvtslafspdgawlasGsdDgtv 34 q+++t++ H +t+ +++pdg +++ G Dg++ tr|O16302|O16302_CAEEL 1680 QLIGTFRPHATITCWSYDPDGFFVIIGAQDGSL 1712 7899*****88********************97 PP >> tr|O16466|O16466_CAEEL AuTophaGy (Yeast Atg homolog) OS=Caenorhabditis elegans OX=6239 GN=atg-18 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.9 0.0 3.6 5.5e+02 13 32 .. 13 32 .. 4 34 .. 0.82 2 ! 16.2 0.0 0.00011 0.017 4 34 .. 181 212 .. 178 217 .. 0.88 3 ! 10.4 0.1 0.0075 1.1 12 30 .. 226 254 .. 213 262 .. 0.68 4 ? 1.2 0.0 5.9 8.9e+02 13 34 .. 325 345 .. 313 348 .. 0.76 Alignments for each domain: == domain 1 score: 1.9 bits; conditional E-value: 3.6 EEEEEEETTSSEEEEEETTS CS WD40 13 vtslafspdgawlasGsdDg 32 ++ + f++d++ ++ G++Dg tr|O16466|O16466_CAEEL 13 INYIGFNQDSKVICVGHKDG 32 66677999*****99***98 PP == domain 2 score: 16.2 bits; conditional E-value: 0.00011 EEEEESS.SSEEEEEEETTSSEEEEEETTSEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtv 34 + t+ +H + + +l+f+++g+++a++s +gtv tr|O16466|O16466_CAEEL 181 VSTFNAHeGTIACLKFNQEGNMIATASTKGTV 212 7899***888**************99988887 PP == domain 3 score: 10.4 bits; conditional E-value: 0.0075 S..........EEEEEEETTSSEEEEEET CS WD40 12 s..........vtslafspdgawlasGsd 30 ++sl+fs+d+++l+s+s tr|O16466|O16466_CAEEL 226 EfrrgvtrcvnIYSLCFSSDSKYLTSSSN 254 2455555555588999********98884 PP == domain 4 score: 1.2 bits; conditional E-value: 5.9 EEEEEEETTSSEEEEEETTSEE CS WD40 13 vtslafspdgawlasGsdDgtv 34 v sl +++++++++++ Dg v tr|O16466|O16466_CAEEL 325 V-SLVSHKNQQYVMAATSDGFV 345 5.77799999**9877549977 PP >> tr|Q21115|Q21115_CAEEL Yeast SEC homolog OS=Caenorhabditis elegans OX=6239 GN=sec-12 PE=1 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.5 0.1 4.2e-05 0.0063 16 38 .] 150 172 .. 130 172 .. 0.74 2 ? 7.8 0.0 0.047 7 2 28 .. 185 212 .. 184 218 .. 0.85 3 ? 6.3 0.0 0.14 22 9 38 .] 301 329 .. 293 329 .. 0.88 Alignments for each domain: == domain 1 score: 17.5 bits; conditional E-value: 4.2e-05 EEEETTSSEEEEEETTSEEEEEE CS WD40 16 lafspdgawlasGsdDgtvriWd 38 ++ s+ g+ +a+G+ Dg++riW+ tr|Q21115|Q21115_CAEEL 150 FDKSSRGKIFATGGADGHIRIWN 172 33455566689***********8 PP == domain 2 score: 7.8 bits; conditional E-value: 0.047 EEEEEEESS.SSEEEEEEETTSSEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasG 28 q++ t+ +H +v +++fs+d++ ++s tr|Q21115|Q21115_CAEEL 185 QPILTIQAHkADVDDIDFSKDSKTIISV 212 6888999**888************9874 PP == domain 3 score: 6.3 bits; conditional E-value: 0.14 SSSSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 9 GHssvtslafspdgawlasGsdDgtvriWd 38 G+ s++sla+s+ g++ a G++ g+v ++d tr|Q21115|Q21115_CAEEL 301 GQ-SISSLAVSDCGNFTAVGTMSGSVLVFD 329 66.8************999*99****9998 PP >> tr|Q23669|Q23669_CAEEL Related to yeast Vacuolar Protein Sorting factor OS=Caenorhabditis elegans OX=6239 GN=vps-15 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 22.6 0.2 1e-06 0.00015 4 38 .] 961 996 .. 958 996 .. 0.89 2 ! 10.1 0.0 0.0089 1.3 21 38 .] 1337 1354 .] 1323 1354 .] 0.70 Alignments for each domain: == domain 1 score: 22.6 bits; conditional E-value: 1e-06 EEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 +++l Hs+ +t l+ ++++++++sGs Dgtv++W+ tr|Q23669|Q23669_CAEEL 961 ITHLHEHSGkITKLCANRESDLFLSGSTDGTVKVWK 996 5688899556*************************6 PP == domain 2 score: 10.1 bits; conditional E-value: 0.0089 TSSEEEEEETTSEEEEEE CS WD40 21 dgawlasGsdDgtvriWd 38 ++ +l+s+++Dg ++iW+ tr|Q23669|Q23669_CAEEL 1337 NSELLVSSGYDGVIKIWK 1354 4555777777*******6 PP >> tr|Q9N533|Q9N533_CAEEL Uncharacterized protein OS=Caenorhabditis elegans OX=6239 GN=CELE_Y32H12A.8 PE=1 SV=3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.9 0.2 0.00013 0.02 3 38 .] 136 173 .. 134 173 .. 0.85 2 ? 3.1 0.1 1.5 2.2e+02 13 38 .] 192 220 .. 179 220 .. 0.72 3 ! 13.5 0.0 0.00077 0.12 9 37 .. 233 264 .. 226 265 .. 0.80 4 ? 2.3 0.0 2.7 4e+02 15 38 .] 285 311 .. 274 311 .. 0.80 5 ? 3.3 0.2 1.3 1.9e+02 6 36 .. 321 353 .. 318 355 .. 0.83 Alignments for each domain: == domain 1 score: 15.9 bits; conditional E-value: 0.00013 EEEEEESS.SSEEEEEEETTSSEE.EEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawl.asGsdDgtvriWd 38 + +++ H s t+l+++ +++ +sGs+D+tv+ +d tr|Q9N533|Q9N533_CAEEL 136 NKSVFKSHeRSATCLDWHATTPYIlVSGSRDCTVKSYD 173 5678999*8779***********6269********887 PP == domain 2 score: 3.1 bits; conditional E-value: 1.5 EEEEE...EETTSSEEEEEETTSEEEEEE CS WD40 13 vtsla...fspdgawlasGsdDgtvriWd 38 ++++a + +++++G+d g +r+Wd tr|Q9N533|Q9N533_CAEEL 192 IRDVAmckAPGFDDYFFTGDDGGVLRLWD 220 555555554444577889**********9 PP == domain 3 score: 13.5 bits; conditional E-value: 0.00077 SS.SSEEEEEEETTSSEE.EEE.ETTSEEEEE CS WD40 9 GH.ssvtslafspdgawl.asG.sdDgtvriW 37 +H s+v+ l+ +p+++ l a+G ++D+ v+iW tr|Q9N533|Q9N533_CAEEL 233 AHrSFVSTLSLNPHNRTLiATGgGRDKMVKIW 264 89999*****888888872577579******* PP == domain 4 score: 2.3 bits; conditional E-value: 2.7 EEEEETTSSE.EEEE.E.TTSEEEEEE CS WD40 15 slafspdgaw.lasG.s.dDgtvriWd 38 +a+ pd ++ la++ s +v++Wd tr|Q9N533|Q9N533_CAEEL 285 RVAWRPDRPYhLATCaSvNETSVHVWD 311 689*******546664445*******9 PP == domain 5 score: 3.3 bits; conditional E-value: 1.3 EEESS.SSEEEEE.EETTSSEEEEEETTSEEEE CS WD40 6 tltGH.ssvtsla.fspdgawlasGsdDgtvri 36 t++ H +svt+ + s d + ++++++Dg v + tr|Q9N533|Q9N533_CAEEL 321 TYDEHrDSVTDACwPSTDFDVFMTCGKDGLVVL 353 7889*999**9987777777799******9876 PP >> tr|G5EBG2|G5EBG2_CAEEL Uncharacterized protein OS=Caenorhabditis elegans OX=6239 GN=CELE_Y43F4B.9 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.5 0.4 2.3e-06 0.00034 11 38 .] 155 182 .. 118 182 .. 0.88 2 ? 7.5 0.0 0.06 9 21 38 .] 208 225 .. 186 225 .. 0.79 Alignments for each domain: == domain 1 score: 21.5 bits; conditional E-value: 2.3e-06 SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 11 ssvtslafspdgawlasGsdDgtvriWd 38 + v+s+a s+d + +++G++Dg+ ++Wd tr|G5EBG2|G5EBG2_CAEEL 155 CEVWSCAISKDAQTVVTGGEDGSMKLWD 182 34*************************9 PP == domain 2 score: 7.5 bits; conditional E-value: 0.06 TSSEEEEEETTSEEEEEE CS WD40 21 dgawlasGsdDgtvriWd 38 + + +++Gs+D +vri+d tr|G5EBG2|G5EBG2_CAEEL 208 NEDQILTGSYDEHVRIFD 225 4445789*********98 PP >> tr|O16318|O16318_CAEEL Uncharacterized protein OS=Caenorhabditis elegans OX=6239 GN=C10B5.1 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.0 0.0 3.3 4.9e+02 12 29 .. 197 212 .. 185 214 .. 0.79 2 ! 16.3 0.1 9.9e-05 0.015 14 37 .. 240 263 .. 234 264 .. 0.91 3 ! 11.5 0.1 0.0032 0.48 8 38 .] 276 309 .. 269 309 .. 0.79 Alignments for each domain: == domain 1 score: 2.0 bits; conditional E-value: 3.3 SEEEEEEETTSSEEEEEE CS WD40 12 svtslafspdgawlasGs 29 ++ ++ ++++w+a+G+ tr|O16318|O16318_CAEEL 197 PIFCI--ASSSKWVAAGC 212 47777..8899***9996 PP == domain 2 score: 16.3 bits; conditional E-value: 9.9e-05 EEEEEETTSSEEEEEETTSEEEEE CS WD40 14 tslafspdgawlasGsdDgtvriW 37 ++++fsp+++ +++G +Dg++r++ tr|O16318|O16318_CAEEL 240 SAISFSPNSKQIIAGFWDGSIRVF 263 5789******************97 PP == domain 3 score: 11.5 bits; conditional E-value: 0.0032 ESS.SSEEEEEEETTSSE.........EEEEETTSEEEEEE CS WD40 8 tGH.ssvtslafspdgaw.........lasGsdDgtvriWd 38 +H s ++s+ w +a++s D tv +W+ tr|O16318|O16318_CAEEL 276 NAHsSTISSI------IWlppeqgeivIATSS-DSTVSLWK 309 489566****......8877777798778889.*******6 PP >> tr|Q19520|Q19520_CAEEL Chromosome Transmission Fidelity factor homolog OS=Caenorhabditis elegans OX=6239 GN=ctf-4 PE # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.8 0.0 0.21 31 9 36 .. 151 176 .. 143 178 .. 0.82 2 ? 4.3 0.0 0.63 94 16 35 .. 207 225 .. 196 228 .. 0.84 3 ! 15.6 0.0 0.00017 0.026 6 38 .] 239 273 .. 234 273 .. 0.81 Alignments for each domain: == domain 1 score: 5.8 bits; conditional E-value: 0.21 SSSSEEEEEEETTSSEEEEEETTSEEEE CS WD40 9 GHssvtslafspdgawlasGsdDgtvri 36 + v +++ +p + ++a ++ Dg+v i tr|Q19520|Q19520_CAEEL 151 AE--VLCVKLDPKNEFVAVSTVDGNVTI 176 43..99************9999***977 PP == domain 2 score: 4.3 bits; conditional E-value: 0.63 EEEETTSSEEEEEETTSEEE CS WD40 16 lafspdgawlasGsdDgtvr 35 l++s+dg+wl+ s +g v+ tr|Q19520|Q19520_CAEEL 207 LSWSKDGQWLFVPS-KGCVK 225 78********9888.88887 PP == domain 3 score: 15.6 bits; conditional E-value: 0.00017 EEESSSS....EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 6 tltGHss....vtslafspdgawlasGsdDgtvriWd 38 l+ H s vt+l sp g++las+++D+ + +W+ tr|Q19520|Q19520_CAEEL 239 RLKDHASvdfsVTAL--SPCGKYLASSTMDNQIAVWN 273 567883334569999..*********999*******8 PP >> tr|Q93759|Q93759_CAEEL Seven WD repeats, AN11 family OS=Caenorhabditis elegans OX=6239 GN=swan-2 PE=1 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.4 0.0 0.0004 0.061 6 38 .] 307 341 .. 302 341 .. 0.84 2 ! 12.5 0.2 0.0015 0.23 3 38 .] 394 431 .. 392 431 .. 0.81 3 ? 2.2 0.0 2.8 4.2e+02 8 36 .. 447 475 .. 440 475 .. 0.71 Alignments for each domain: == domain 1 score: 14.4 bits; conditional E-value: 0.0004 EEESS.SSEEEEEEETTSSEEEEE.ETTSEEEEEE CS WD40 6 tltGH.ssvtslafspdgawlasG.sdDgtvriWd 38 l +H + v +++fs+ +a ++++ + Dg++r++d tr|Q93759|Q93759_CAEEL 307 QLIAHdKEVFDISFSRGSAQIFASvGADGSLRLFD 341 3789*888************9765577******98 PP == domain 2 score: 12.5 bits; conditional E-value: 0.0015 EEEEEESS.SSEEEEEEETTSSEEE.EEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawla.sGsdDgtvriWd 38 ++ l+ H +++l++ p++ ++ +++dD iWd tr|Q93759|Q93759_CAEEL 394 PVARLRNHeATINGLSWAPHSGSHIcTAGDDYQALIWD 431 6677899*777****988888886527799*******9 PP == domain 3 score: 2.2 bits; conditional E-value: 2.8 ESSSSEEEEE.EETTSSEEEEEETTSEEEE CS WD40 8 tGHssvtsla.fspdgawlasGsdDgtvri 36 +++ v+ + s+ +w++ +s D+++ i tr|Q93759|Q93759_CAEEL 447 RAQAEVNQIHwSSSFPDWISICS-DNKLEI 475 555446666667888899999**.998765 PP >> tr|Q19873|Q19873_CAEEL WD Repeat protein OS=Caenorhabditis elegans OX=6239 GN=wdr-46 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.9 0.0 0.41 61 13 38 .] 295 318 .. 280 318 .. 0.74 2 ! 19.9 0.0 7.1e-06 0.0011 4 38 .] 326 360 .. 323 360 .. 0.88 Alignments for each domain: == domain 1 score: 4.9 bits; conditional E-value: 0.41 EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriWd 38 v ++ +p +a + +G+ +gtv +W+ tr|Q19873|Q19873_CAEEL 295 VMCQ--NPANAIIHTGHTNGTVSLWS 318 6777..777777669*99*******5 PP == domain 2 score: 19.9 bits; conditional E-value: 7.1e-06 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +++l +H s v ++a+++ g+++a+ + D+++riWd tr|Q19873|Q19873_CAEEL 326 VKIL-THlSAVKGIAVDDQGNYMATTGLDRKCRIWD 360 4556.59999**************8888*******9 PP >> sp|Q22071|MEC15_CAEEL F-box/WD repeat-containing protein mec-15 OS=Caenorhabditis elegans OX=6239 GN=mec-15 PE=1 SV= # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.6 0.0 7.8e-05 0.012 8 38 .] 100 133 .. 91 133 .. 0.65 2 ? 3.9 3.7 0.8 1.2e+02 8 37 .. 155 185 .. 148 186 .. 0.87 3 ? 6.3 0.0 0.14 21 22 38 .] 296 311 .. 284 311 .. 0.77 4 ? 1.8 0.0 3.9 5.9e+02 16 34 .. 375 393 .. 357 395 .. 0.84 Alignments for each domain: == domain 1 score: 16.6 bits; conditional E-value: 7.8e-05 ESS.SSEEEEE..EETTSSEEEEEETTSEEEEEE CS WD40 8 tGH.ssvtsla..fspdgawlasGsdDgtvriWd 38 GH v s+ + ++++ +sGs+D+t+r+W+ sp|Q22071|MEC15_CAEEL 100 PGHsATVDSVMlfENNNKQFCLSGSRDRTIRLWS 133 4884447666663344455557***********5 PP == domain 2 score: 3.9 bits; conditional E-value: 0.8 ESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 8 tGH.ssvtslafspdgawlasGsdDgtvriW 37 t+H ++++ +a + ++ + + s+D tv+ W sp|Q22071|MEC15_CAEEL 155 TAHsGWIWNMAQESTSTNFYTTSWDSTVKSW 185 5896669*999888888899*********99 PP == domain 3 score: 6.3 bits; conditional E-value: 0.14 SSEEEEEETTSEEEEEE CS WD40 22 gawlasGsdDgtvriWd 38 +++l+s s Dg+v+++d sp|Q22071|MEC15_CAEEL 296 NQLLTSTS-DGKVKLYD 311 45576668.******98 PP == domain 4 score: 1.8 bits; conditional E-value: 3.9 EEEETTSSEEEEE.ETTSEE CS WD40 16 lafspdgawlasG.sdDgtv 34 +++sp+++ la G + D ++ sp|Q22071|MEC15_CAEEL 375 FDYSPSSRTLAIGnG-DSSI 393 469**********66.9988 PP >> tr|Q9U1Q3|Q9U1Q3_CAEEL CYclophyliN OS=Caenorhabditis elegans OX=6239 GN=cyn-15 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.3 0.1 0.016 2.4 21 38 .] 64 81 .. 48 81 .. 0.77 2 ! 10.8 0.1 0.0056 0.84 4 38 .] 91 127 .. 89 127 .. 0.84 3 ? 5.9 0.0 0.19 29 14 38 .] 251 275 .. 241 275 .. 0.86 Alignments for each domain: == domain 1 score: 9.3 bits; conditional E-value: 0.016 TSSEEEEEETTSEEEEEE CS WD40 21 dgawlasGsdDgtvriWd 38 ++++++s Dg++++W+ tr|Q9U1Q3|Q9U1Q3_CAEEL 64 KTDFIITASVDGHLKFWK 81 447899***********6 PP == domain 2 score: 10.8 bits; conditional E-value: 0.0056 EEEEESS.SSEEEEEEETTSSEEEEEE.TTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGs.dDgtvriWd 38 +++++ H s ++++ + dg++la+ + D++v+++d tr|Q9U1Q3|Q9U1Q3_CAEEL 91 VKHFRCHlSEFSHICANIDGTLLATVCeADKSVKVFD 127 799****98888888899*****976526******98 PP == domain 3 score: 5.9 bits; conditional E-value: 0.19 EEEEEETTSSEEEEEETTSEEEEEE CS WD40 14 tslafspdgawlasGsdDgtvriWd 38 + f+p+g la+ +D+++ri++ tr|Q9U1Q3|Q9U1Q3_CAEEL 251 VCATFDPSGLKLATFAEDRKIRIFN 275 3788********98789******97 PP >> tr|G5EEZ4|G5EEZ4_CAEEL 3E324 OS=Caenorhabditis elegans OX=6239 GN=3E324 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 10.0 0.0 0.0095 1.4 15 38 .] 11 34 .. 6 34 .. 0.93 2 ? 2.8 0.0 1.8 2.7e+02 6 38 .] 89 126 .. 84 126 .. 0.84 3 ? 9.2 0.0 0.017 2.6 8 34 .. 142 168 .. 135 172 .. 0.82 4 ? 2.0 0.0 3.2 4.8e+02 13 38 .] 189 212 .. 183 212 .. 0.70 Alignments for each domain: == domain 1 score: 10.0 bits; conditional E-value: 0.0095 EEEEETTSSEEEEEETTSEEEEEE CS WD40 15 slafspdgawlasGsdDgtvriWd 38 +++ ++dg+ l+ G Dg++r++d tr|G5EEZ4|G5EEZ4_CAEEL 11 CMKSNKDGSRLVVGFVDGSIRFYD 34 88999*********99******98 PP == domain 2 score: 2.8 bits; conditional E-value: 1.8 EEESSSSE.EEEEEETTSSE....EEEEETTSEEEEEE CS WD40 6 tltGHssv.tslafspdgaw....lasGsdDgtvriWd 38 +l+ H sv t++++ p a+ la++++ g v+ W+ tr|G5EEZ4|G5EEZ4_CAEEL 89 ILKCHRSVpTAICTLPPTALksqqLATADESGEVKTWN 126 57899778899998888888888899999999999997 PP == domain 3 score: 9.2 bits; conditional E-value: 0.017 ESS.SSEEEEEEETTSSEEEEEETTSEE CS WD40 8 tGH.ssvtslafspdgawlasGsdDgtv 34 + ++++l+++ +++la++s Dgt+ tr|G5EEZ4|G5EEZ4_CAEEL 142 QEQdEDINDLKVDVKSNLLATSS-DGTL 168 555456*****************.**97 PP == domain 4 score: 2.0 bits; conditional E-value: 3.2 EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriWd 38 +s++ + + G++Dg v +++ tr|G5EEZ4|G5EEZ4_CAEEL 189 LYSVCGTNRSVY--VGGEDGYVEVFN 212 556655555555..4999****9987 PP >> sp|Q9GYS1|MES6_CAEEL Polycomb protein mes-6 OS=Caenorhabditis elegans OX=6239 GN=mes-6 PE=1 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.5 0.1 0.061 9.2 13 36 .. 151 175 .. 140 177 .. 0.72 2 ! 20.4 0.7 5.1e-06 0.00077 7 38 .] 190 222 .. 182 222 .. 0.88 3 ? 7.1 0.0 0.082 12 16 38 .] 378 400 .. 361 400 .. 0.83 Alignments for each domain: == domain 1 score: 7.5 bits; conditional E-value: 0.061 EEEEE.EETTSSEEEEEETTSEEEE CS WD40 13 vtsla.fspdgawlasGsdDgtvri 36 +++++ + ++++++++s D+++ri sp|Q9GYS1|MES6_CAEEL 151 INDIRtCPANSNLIVCASSDQSIRI 175 4555533677777787777*****9 PP == domain 2 score: 20.4 bits; conditional E-value: 5.1e-06 EESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 7 ltGH.ssvtslafspdgawlasGsdDgtvriWd 38 l+ H + + s+++s dg++++s++ D+ ++ Wd sp|Q9GYS1|MES6_CAEEL 190 LECHaGTILSVDWSTDGDFILSCGFDHQLMEWD 222 6799777**************9999*****998 PP == domain 3 score: 7.1 bits; conditional E-value: 0.082 EEEETTSSEEEEEETTSEEEEEE CS WD40 16 lafspdgawlasGsdDgtvriWd 38 +a++p +wl++G+ g+v+++d sp|Q9GYS1|MES6_CAEEL 378 FAVDPRRRWLVCGGAGGSVMFFD 400 568999********9*****998 PP >> tr|Q93758|Q93758_CAEEL Seven WD repeats, AN11 family OS=Caenorhabditis elegans OX=6239 GN=swan-1 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.1 0.0 6.4 9.7e+02 25 37 .. 39 51 .. 4 52 .. 0.69 2 ? 5.9 0.0 0.19 29 6 38 .] 215 251 .. 210 251 .. 0.74 3 ! 17.5 0.8 4e-05 0.006 5 38 .] 306 341 .. 302 341 .. 0.85 Alignments for each domain: == domain 1 score: 1.1 bits; conditional E-value: 6.4 EEEEETTSEEEEE CS WD40 25 lasGsdDgtvriW 37 ++ G++D+ + i+ tr|Q93758|Q93758_CAEEL 39 IVIGGRDRRCEIY 51 566999****998 PP == domain 2 score: 5.9 bits; conditional E-value: 0.19 EEESS.SSEEEEE...EETTSSEEEEEETTSEEEEEE CS WD40 6 tltGH.ssvtsla...fspdgawlasGsdDgtvriWd 38 l +H ++v+++ + + +a+ + Dg+ r++d tr|Q93758|Q93758_CAEEL 215 QLIAHdKPVHDIEfakINGGRDHFATVGADGSARMFD 251 4779*999999966666666666887666****9988 PP == domain 3 score: 17.5 bits; conditional E-value: 4e-05 EEEESS.SSEEEEEEETTSSEEE.EEETTSEEEEEE CS WD40 5 rtltGH.ssvtslafspdgawla.sGsdDgtvriWd 38 l+ H ++v+++a+ p+++ ++ +++dD iWd tr|Q93758|Q93758_CAEEL 306 CRLRNHtGPVNGIAWAPHSPHHIcTAGDDSQALIWD 341 56889*888************7636789*******9 PP >> tr|A0A0K3ATN9|A0A0K3ATN9_CAEEL TOMosyn synaptic protein OS=Caenorhabditis elegans OX=6239 GN=tom-1 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.0 0.0 1.6 2.4e+02 12 35 .. 133 156 .. 122 157 .. 0.81 2 ? 1.2 0.0 5.8 8.8e+02 7 38 .] 180 213 .. 177 213 .. 0.80 3 ! 10.0 0.0 0.0098 1.5 13 38 .] 228 253 .. 222 253 .. 0.92 4 ? 9.1 0.1 0.018 2.7 22 37 .. 429 444 .. 370 445 .. 0.67 Alignments for each domain: == domain 1 score: 3.0 bits; conditional E-value: 1.6 SEEEEEEETTSSEEEEEETTSEEE CS WD40 12 svtslafspdgawlasGsdDgtvr 35 sv+++ + g+wl+ G+d+g+v+ tr|A0A0K3ATN9|A0A0K3ATN9_CAEEL 133 SVSCIHLPVAGKWLFIGTDKGNVY 156 499999************999886 PP == domain 2 score: 1.2 bits; conditional E-value: 5.8 EESS.SSEEEEEEETTSSE.EEEEETTSEEEEEE CS WD40 7 ltGH.ssvtslafspdgaw.lasGsdDgtvriWd 38 ++ H ++v+ la+sp + l+ d+g v W+ tr|A0A0K3ATN9|A0A0K3ATN9_CAEEL 180 CRVHpGPVRQLAVSPAENTkLLIVYDKGIVVQWN 213 6789889*99998888888744578899999997 PP == domain 3 score: 10.0 bits; conditional E-value: 0.0098 EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriWd 38 + s+ ++ dg+ +++G Dg++ +++ tr|A0A0K3ATN9|A0A0K3ATN9_CAEEL 228 IKSVNWHFDGRQILTGNVDGSISLYN 253 889*************99*****997 PP == domain 4 score: 9.1 bits; conditional E-value: 0.018 SSEEEEEETTSEEEEE CS WD40 22 gawlasGsdDgtvriW 37 + ++++G++Dg++++W tr|A0A0K3ATN9|A0A0K3ATN9_CAEEL 429 QELVVTGHKDGSLKFW 444 23489*********** PP >> sp|Q22830|OSM1_CAEEL Intraflagellar transport protein osm-1 OS=Caenorhabditis elegans OX=6239 GN=osm-1 PE=1 SV=4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.7 0.0 2 3e+02 12 34 .. 16 40 .. 5 43 .. 0.75 2 ? 7.3 0.0 0.072 11 12 37 .. 67 93 .. 58 94 .. 0.85 3 ? 8.2 0.0 0.037 5.6 11 36 .. 113 137 .. 104 137 .. 0.87 4 ? 4.2 0.0 0.68 1e+02 12 38 .] 154 180 .. 143 180 .. 0.82 Alignments for each domain: == domain 1 score: 2.7 bits; conditional E-value: 2 S..EEEEEEETTSSEEE.EEETTSEE CS WD40 12 s..vtslafspdgawla.sGsdDgtv 34 ++ ++ sp+g+ a ++s D++v sp|Q22830|OSM1_CAEEL 16 EakISNISCSPNGSRAAiACS-DRSV 40 145888999******764789.**98 PP == domain 2 score: 7.3 bits; conditional E-value: 0.072 S.EEEEEEETTSSEEEEE.ETTSEEEEE CS WD40 12 s.vtslafspdgawlasG.sdDgtvriW 37 + v ++ fspd++ +a G s D+ + i+ sp|Q22830|OSM1_CAEEL 67 FtVLCMTFSPDSSRIAIGqS-DNVLFIY 93 2499**************88.*999987 PP == domain 3 score: 8.2 bits; conditional E-value: 0.037 SSEEEEEEETTSSEEEEEETTSEEEE CS WD40 11 ssvtslafspdgawlasGsdDgtvri 36 s vt+l+++ d + l+ G Dg+vri sp|Q22830|OSM1_CAEEL 113 SAVTCLSWPFDDKILV-GQLDGKVRI 137 45************98.*77*****8 PP == domain 4 score: 4.2 bits; conditional E-value: 0.68 SEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 12 svtslafspdgawlasGsdDgtvriWd 38 v s++++p + ++s++ Dg++ +++ sp|Q22830|OSM1_CAEEL 154 TVVSIQTHPKRTSFVSAHQDGSIILYN 180 37899999999************9997 PP >> tr|Q9NAQ2|Q9NAQ2_CAEEL Uncharacterized protein OS=Caenorhabditis elegans OX=6239 GN=CELE_JC8.2 PE=1 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.6 0.0 0.5 75 22 38 .] 194 210 .. 191 210 .. 0.91 2 ! 17.4 0.5 4.6e-05 0.0069 8 38 .] 243 275 .. 238 275 .. 0.77 3 ? 3.7 0.1 0.96 1.4e+02 7 35 .. 332 359 .. 306 360 .. 0.72 Alignments for each domain: == domain 1 score: 4.6 bits; conditional E-value: 0.5 SSEEEEEETTSEEEEEE CS WD40 22 gawlasGsdDgtvriWd 38 g++la G+++ ++iWd tr|Q9NAQ2|Q9NAQ2_CAEEL 194 GNLLAVGTMNSEIHIWD 210 889****99*******9 PP == domain 2 score: 17.4 bits; conditional E-value: 4.6e-05 ESS.SSEEEEEEETTSSE.EEEEETTSEEEEEE CS WD40 8 tGH.ssvtslafspdgaw.lasGsdDgtvriWd 38 GH + v sla+++ + lasG+ D+tv +Wd tr|Q9NAQ2|Q9NAQ2_CAEEL 243 QGHtDAVISLAWNRITTHvLASGGADKTVVLWD 275 4995557799666666665689999*******9 PP == domain 3 score: 3.7 bits; conditional E-value: 0.96 EESSSSEEEEEEETTSSE.EEEEETTSEEE CS WD40 7 ltGHssvtslafspdgaw.lasGsdDgtvr 35 ++G+ + + +++ +++ +++sdDg +r tr|Q9NAQ2|Q9NAQ2_CAEEL 332 FDGQ--IEKVIWNHFNPFtAFCSSDDGRLR 359 4444..6666666666664236788*9987 PP >> tr|Q9XTS1|Q9XTS1_CAEEL Uncharacterized protein OS=Caenorhabditis elegans OX=6239 GN=CELE_F47G4.4 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.1 0.7 0.019 2.9 3 38 .] 85 122 .. 83 122 .. 0.82 2 ? 9.5 0.0 0.014 2.1 6 38 .] 130 163 .. 125 163 .. 0.80 3 ? 4.3 0.0 0.62 93 8 37 .. 176 201 .. 167 202 .. 0.72 Alignments for each domain: == domain 1 score: 9.1 bits; conditional E-value: 0.019 EEEEEESS.SSEEEEEEETTSSEE.EEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawl.asGsdDgtvriWd 38 +r ltGH ++tsla s+ +++ +Gs D+ Wd tr|Q9XTS1|Q9XTS1_CAEEL 85 EVRNLTGHtLPITSLAASKFNPYCwYTGSSDCDWTQWD 122 6899****777*****8888888557998899888887 PP == domain 2 score: 9.5 bits; conditional E-value: 0.014 EEESS.SS..EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 6 tltGH.ss..vtslafspdgawlasGsdDgtvriWd 38 ++ G ++ v+s+a sp +++a G+ D t+ i+d tr|Q9XTS1|Q9XTS1_CAEEL 130 IF-GSkTPgvVRSIALSPGDRYVAVGT-DETIQIFD 163 55.44344668****************.*****998 PP == domain 3 score: 4.3 bits; conditional E-value: 0.62 ESSSSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 8 tGHssvtslafspdgawlasGsdDgtvriW 37 +GH +l +p+ +l+s + D+ vr++ tr|Q9XTS1|Q9XTS1_CAEEL 176 SGH----ALELHPSDVLLSSVGHDRIVRFF 201 577....6667888889876455*****85 PP >> tr|H2FLM3|H2FLM3_CAEEL WD40 and FYVE domain protein OS=Caenorhabditis elegans OX=6239 GN=wdfy-3 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.2 0.4 5e-05 0.0076 2 37 .. 3003 3039 .. 3002 3040 .. 0.90 2 ? 5.5 0.0 0.26 40 15 37 .. 3107 3134 .. 3092 3135 .. 0.82 3 ? 1.3 0.0 5.5 8.2e+02 10 37 .. 3247 3273 .. 3238 3274 .. 0.88 Alignments for each domain: == domain 1 score: 17.2 bits; conditional E-value: 5e-05 EEEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEE CS WD40 2 qclrtltGHss.vtslafspdgawlasGsdDgtvriW 37 ++l +l GHs+ +t+l ++++a l+s+s+D tv +W tr|H2FLM3|H2FLM3_CAEEL 3003 KKLSVLNGHSDaITCLVSCQSHAVLVSASRDLTVLVW 3039 678999***556************************* PP == domain 2 score: 5.5 bits; conditional E-value: 0.26 EEEEETTSSE.....EEEEETTSEEEEE CS WD40 15 slafspdgaw.....lasGsdDgtvriW 37 slafs + w +++G+ Dg v+i+ tr|H2FLM3|H2FLM3_CAEEL 3107 SLAFSTMNEWdndnvIMCGTSDGIVKIY 3134 788888888888887779966******8 PP == domain 3 score: 1.3 bits; conditional E-value: 5.5 S.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 10 H.ssvtslafspdgawlasGsdDgtvriW 37 H ++t++a s+d++ l + Dg r+W tr|H2FLM3|H2FLM3_CAEEL 3247 HpAPITAIAPSRDHRSLYV-G-DGIGRVW 3273 8788*************96.5.9999988 PP >> sp|Q22006|PRO1_CAEEL Pre-rRNA-processing protein pro-1 OS=Caenorhabditis elegans OX=6239 GN=pro-1 PE=2 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 10.3 0.3 0.008 1.2 2 34 .. 129 162 .. 128 180 .. 0.93 2 ! 15.4 0.0 0.00019 0.028 4 37 .. 282 316 .. 279 317 .. 0.85 Alignments for each domain: == domain 1 score: 10.3 bits; conditional E-value: 0.008 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtv 34 ++l ++++H +++t + s+d ++++++s+Dg v sp|Q22006|PRO1_CAEEL 129 ELLSVIDAHyQNITKIVISDDDSMIFTASKDGAV 162 6788999**999*******************988 PP == domain 2 score: 15.4 bits; conditional E-value: 0.00019 EEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEE CS WD40 4 lrtltGHss.vtslafspdgawlasGsdDgtvriW 37 r+l GHs+ ++ la + dg++lasG+ g+ iW sp|Q22006|PRO1_CAEEL 282 FRVLNGHSDeISRLAINTDGTLLASGDASGKYCIW 316 6899***556***************9878887777 PP >> tr|Q86MP3|Q86MP3_CAEEL Ectopic P Granules OS=Caenorhabditis elegans OX=6239 GN=epg-6 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.6 0.0 0.055 8.2 7 34 .. 215 243 .. 210 248 .. 0.80 2 ! 14.5 0.0 0.00036 0.054 6 36 .. 262 290 .. 254 291 .. 0.86 Alignments for each domain: == domain 1 score: 7.6 bits; conditional E-value: 0.055 EESS.SSEEEEEEETTSSEEEEEETTSEE CS WD40 7 ltGH.ssvtslafspdgawlasGsdDgtv 34 +++H +++ +a + g+++a+Gs +gtv tr|Q86MP3|Q86MP3_CAEEL 215 IEAHlTDIAQVALNCQGTLVATGSTKGTV 243 5789989888888888*******977776 PP == domain 2 score: 14.5 bits; conditional E-value: 0.00036 EEESSSSEEEEEEETTSSEEEEEETTSEEEE CS WD40 6 tltGHssvtslafspdgawlasGsdDgtvri 36 t +H ++afsp +++la +sd+gt+++ tr|Q86MP3|Q86MP3_CAEEL 262 TVQAH--LQCMAFSPCSSYLAVASDKGTLHM 290 45577..99************9**9***986 PP >> tr|Q20197|Q20197_CAEEL Uncharacterized protein OS=Caenorhabditis elegans OX=6239 GN=CELE_F39H12.2 PE=4 SV=3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.2 0.0 0.33 49 5 37 .. 171 204 .. 167 205 .. 0.83 2 ! 15.9 0.0 0.00013 0.02 4 34 .. 251 282 .. 248 284 .. 0.84 Alignments for each domain: == domain 1 score: 5.2 bits; conditional E-value: 0.33 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvriW 37 + l+ H + +t++a++++ +s++ +g + iW tr|Q20197|Q20197_CAEEL 171 KNLKEHrCAITDIATCRYDEITVSADSNGELIIW 204 568899888****999999997788559999999 PP == domain 2 score: 15.9 bits; conditional E-value: 0.00013 EEEEESS.SSEEEEEEETTSSEEEEEETTSEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtv 34 + ++ +H +v+s+++ p++a+++++s+Dgt tr|Q20197|Q20197_CAEEL 251 MCEINAHsRPVNSVSVAPESAYVLTSSEDGTF 282 556779*555********************96 PP >> tr|K8ESK9|K8ESK9_CAEEL Uncharacterized protein OS=Caenorhabditis elegans OX=6239 GN=pod-1 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.3 0.1 0.033 5 13 38 .] 217 243 .. 185 243 .. 0.73 2 ? 1.9 0.1 3.5 5.3e+02 13 37 .. 675 700 .. 667 701 .. 0.81 3 ? 3.5 0.0 1.1 1.7e+02 13 38 .] 725 751 .. 715 751 .. 0.67 4 ? 8.4 0.1 0.032 4.7 7 35 .. 761 790 .. 756 792 .. 0.85 Alignments for each domain: == domain 1 score: 8.3 bits; conditional E-value: 0.033 EEEEEEETTSSEEE.EEETTSEEEEEE CS WD40 13 vtslafspdgawla.sGsdDgtvriWd 38 v s+++s dg++la sG++ + + ++d tr|K8ESK9|K8ESK9_CAEEL 217 VQSMDWSEDGKLLAvSGDKGRQIVVYD 243 67778********84666677777776 PP == domain 2 score: 1.9 bits; conditional E-value: 3.5 EEEEEEETTSSE.EEEEETTSEEEEE CS WD40 13 vtslafspdgaw.lasGsdDgtvriW 37 vt+l ++p + la G+d g + +W tr|K8ESK9|K8ESK9_CAEEL 675 VTDLHWNPFDDEqLAVGTDCGQINLW 700 8999877776668999*99****999 PP == domain 3 score: 3.5 bits; conditional E-value: 1.1 EEEEEEETTSSE.EEEE.ETTSEEEEEE CS WD40 13 vtslafspdgaw.lasG.sdDgtvriWd 38 +tsl+++p + la + s + t+ +Wd tr|K8ESK9|K8ESK9_CAEEL 725 ITSLRWHPLASDlLAVAlS-NSTIELWD 751 7788444444443556677.*******9 PP == domain 4 score: 8.4 bits; conditional E-value: 0.032 EESS.SSEEEEEEETTSSEEEEEETTSEEE CS WD40 7 ltGH.ssvtslafspdgawlasGsdDgtvr 35 + H +++ ++a+s dg+ +as ++D t+ tr|K8ESK9|K8ESK9_CAEEL 761 FVNHtGGILGIAWSADGRRIASVGKDATLF 790 5579777**************999998875 PP >> tr|Q18859|Q18859_CAEEL IntraFlagellar Transport Associated OS=Caenorhabditis elegans OX=6239 GN=ifta-1 PE=4 SV=4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.1 0.0 3 4.5e+02 7 37 .. 85 116 .. 80 116 .. 0.84 2 ? 7.0 0.0 0.085 13 15 38 .] 178 201 .. 157 201 .. 0.76 3 ? 9.9 0.1 0.011 1.6 13 31 .. 335 353 .. 325 357 .. 0.81 Alignments for each domain: == domain 1 score: 2.1 bits; conditional E-value: 3 EESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 7 ltGH.ssvtslafspdgawlasGsdDgtvriW 37 l+GH v ++ +++ l++++ g + +W tr|Q18859|Q18859_CAEEL 85 LEGHnATVMNATWNENNQKLTTSDTSGLIIVW 116 89**555*9999********998779999998 PP == domain 2 score: 7.0 bits; conditional E-value: 0.085 EEEEETTSSEEEEEETTSEEEEEE CS WD40 15 slafspdgawlasGsdDgtvriWd 38 ++ + pdg++l+ G+ Dg+v ++d tr|Q18859|Q18859_CAEEL 178 ACEWAPDGDMLIFGTADGKVSVFD 201 556*******998*99*****998 PP == domain 3 score: 9.9 bits; conditional E-value: 0.011 EEEEEEETTSSEEEEEETT CS WD40 13 vtslafspdgawlasGsdD 31 +t+ ++sp+ga+la ++ D tr|Q18859|Q18859_CAEEL 335 ITGAKWSPNGAFLAVCGND 353 999**********987645 PP >> tr|Q18968|Q18968_CAEEL SREBP Cleavage activating Protein (SCAP) homolog OS=Caenorhabditis elegans OX=6239 GN=scp-1 P # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 13.0 0.0 0.0011 0.17 6 38 .] 727 761 .. 723 761 .. 0.87 2 ! 14.8 0.0 0.0003 0.046 3 38 .] 870 904 .. 868 904 .. 0.81 3 ? 0.8 0.1 7.7 1.2e+03 6 38 .] 917 950 .. 913 950 .. 0.84 Alignments for each domain: == domain 1 score: 13.0 bits; conditional E-value: 0.0011 EEESS.SSEEEEEEETTSSE.EEEEETTSEEEEEE CS WD40 6 tltGH.ssvtslafspdgaw.lasGsdDgtvriWd 38 ++ GH +++ s+a +p+ + ++s++ g v++W+ tr|Q18968|Q18968_CAEEL 727 VYQGHrFPIESVAIDPEDTStFVSCCQEGVVYVWN 761 699**999*****77777777779999*******8 PP == domain 2 score: 14.8 bits; conditional E-value: 0.0003 EEEEEESS.SSEEEEEEETTSSE...EEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgaw...lasGsdDgtvriWd 38 +l++ ++H ++v+ + w l+++s D+++++W+ tr|Q18968|Q18968_CAEEL 870 LLKSVRAHqKPVCRI-----AIWksqLITSSFDRSIKMWN 904 78999***9999988.....344666778888*******8 PP == domain 3 score: 0.8 bits; conditional E-value: 7.7 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 6 tltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++ +H s+v la++ + + s+++ g + W+ tr|Q18968|Q18968_CAEEL 917 VFLAHnSPVVNLAVDEATSIMYSSCEEGVICWWN 950 56689777889999999999999999****9998 PP >> sp|Q10122|SORF2_CAEEL Suppressor of organelle fusion 2 OS=Caenorhabditis elegans OX=6239 GN=sorf-2 PE=1 SV=3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.6 0.0 1.9e-05 0.0029 6 38 .] 1131 1164 .. 1128 1164 .. 0.86 2 ? 8.7 1.1 0.026 3.9 3 38 .] 1174 1207 .. 1172 1207 .. 0.81 Alignments for each domain: == domain 1 score: 18.6 bits; conditional E-value: 1.9e-05 EEESS.SSEEEEE.EETTSSEEEEEETTSEEEEEE CS WD40 6 tltGH.ssvtsla.fspdgawlasGsdDgtvriWd 38 +tGH ++ la s ++++++++s D+tv++W+ sp|Q10122|SORF2_CAEEL 1131 NYTGHqEKIRKLAaISNENSFVSASS-DKTVKLWS 1164 699**666*****9999999998778.*******5 PP == domain 2 score: 8.7 bits; conditional E-value: 0.026 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 c++t+ H +v+++ d++ +++ Dg +++Wd sp|Q10122|SORF2_CAEEL 1174 CQWTYQKHtRPVHDITILADNSI--AST-DGVLHVWD 1207 999*****777****66666666..456.*******9 PP >> sp|D9N129|WDR20_CAEEL WD repeat-containing protein 20 homolog OS=Caenorhabditis elegans OX=6239 GN=wdr-20 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.3 0.0 2.7 4.1e+02 12 38 .] 228 255 .. 222 255 .. 0.72 2 ? 3.8 0.1 0.87 1.3e+02 18 38 .] 313 333 .. 286 333 .. 0.75 3 ? 9.2 0.0 0.017 2.6 15 34 .. 352 371 .. 338 375 .. 0.82 Alignments for each domain: == domain 1 score: 2.3 bits; conditional E-value: 2.7 SEEEEEEETTSSEE.EEEETTSEEEEEE CS WD40 12 svtslafspdgawl.asGsdDgtvriWd 38 svt++++ p + + +++ g+++++d sp|D9N129|WDR20_CAEEL 228 SVTCIRWLPGDSNIfLASYVSGNLYVYD 255 69***86666666425777788888887 PP == domain 2 score: 3.8 bits; conditional E-value: 0.87 EETTSSEEEEEETTSEEEEEE CS WD40 18 fspdgawlasGsdDgtvriWd 38 +dg+++a+ s Dg +ri++ sp|D9N129|WDR20_CAEEL 313 SGSDGKMMATVSHDGFLRIFN 333 4467777888788******97 PP == domain 3 score: 9.2 bits; conditional E-value: 0.017 EEEEETTSSEEEEEETTSEE CS WD40 15 slafspdgawlasGsdDgtv 34 l++spd +++a+G++D + sp|D9N129|WDR20_CAEEL 352 TLSWSPDAKLIATGGEDDLL 371 689************99765 PP >> sp|Q09392|YR49_CAEEL Uncharacterized WD repeat-containing protein F47D12.9 OS=Caenorhabditis elegans OX=6239 GN=F47D # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.8 0.0 0.91 1.4e+02 28 38 .] 438 447 .. 405 447 .. 0.82 2 ! 11.2 0.0 0.0042 0.63 2 37 .. 453 491 .. 452 492 .. 0.81 Alignments for each domain: == domain 1 score: 3.8 bits; conditional E-value: 0.91 EETTSEEEEEE CS WD40 28 GsdDgtvriWd 38 G D +riWd sp|Q09392|YR49_CAEEL 438 GF-DSIIRIWD 447 55.*******9 PP == domain 2 score: 11.2 bits; conditional E-value: 0.0042 EEEEEEESS.SSEEEEE..EETTSSEE.EEEETTSEEEEE CS WD40 2 qclrtltGH.ssvtsla..fspdgawl.asGsdDgtvriW 37 +++ + GH ++ + l f+++ +++ a+Gs Dg vr W sp|Q09392|YR49_CAEEL 453 NPMMEMHGHsNNCNRLNvfFDKEERFVfAAGS-DGYVRGW 491 5677889**87799888889999999835778.*****88 PP >> sp|G5ECZ4|DYF2_CAEEL WD repeat-containing protein dyf-2 OS=Caenorhabditis elegans OX=6239 GN=dyf-2 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.6 0.1 1 1.5e+02 15 38 .] 79 103 .. 69 103 .. 0.84 2 ? 4.5 0.0 0.52 78 14 37 .. 124 147 .. 109 148 .. 0.75 3 ? 4.2 0.0 0.68 1e+02 10 35 .. 161 186 .. 153 187 .. 0.73 Alignments for each domain: == domain 1 score: 3.6 bits; conditional E-value: 1 EEEEETTSSEEEEE.ETTSEEEEEE CS WD40 15 slafspdgawlasG.sdDgtvriWd 38 ++a++++g+ la + gt+++Wd sp|G5ECZ4|DYF2_CAEEL 79 DIAWDKEGDVLAIAvANTGTIYLWD 103 799*******9855456*******9 PP == domain 2 score: 4.5 bits; conditional E-value: 0.52 EEEEEETTSSEEEEEETTSEEEEE CS WD40 14 tslafspdgawlasGsdDgtvriW 37 t+la+sp+ + l+ G g++ ++ sp|G5ECZ4|DYF2_CAEEL 124 TCLAWSPSTPTLVIGNNAGNIVVY 147 9***********999656666555 PP == domain 3 score: 4.2 bits; conditional E-value: 0.68 S.SSEEEEEEETTSSEEEEEETTSEEE CS WD40 10 H.ssvtslafspdgawlasGsdDgtvr 35 H svt + + p+ +s+sdD+t+ sp|G5ECZ4|DYF2_CAEEL 161 HqRSVTQITVTPEDYV-ISCSDDNTLS 186 6455888877777555.689*9**986 PP >> tr|Q22540|Q22540_CAEEL Uncharacterized protein OS=Caenorhabditis elegans OX=6239 GN=CELE_T18D3.1 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.2 0.0 0.00047 0.07 2 35 .. 304 336 .. 303 337 .. 0.87 Alignments for each domain: == domain 1 score: 14.2 bits; conditional E-value: 0.00047 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvr 35 +++ +++GH + v ++ +++l++G++Dg+v tr|Q22540|Q22540_CAEEL 304 KPMLSYKGHkGEVKCM--AATKDLLLTGGEDGKVI 336 7899*****555****..999999********995 PP >> tr|A5A8P6|A5A8P6_CAEEL Uncharacterized protein OS=Caenorhabditis elegans OX=6239 GN=CELE_Y54G2A.12 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.3 0.1 5.5 8.3e+02 29 37 .. 194 202 .. 190 203 .. 0.87 2 ! 13.4 0.0 0.0008 0.12 3 34 .. 210 242 .. 208 243 .. 0.90 Alignments for each domain: == domain 1 score: 1.3 bits; conditional E-value: 5.5 ETTSEEEEE CS WD40 29 sdDgtvriW 37 s+D ++++W tr|A5A8P6|A5A8P6_CAEEL 194 SMDTKIKLW 202 56******* PP == domain 2 score: 13.4 bits; conditional E-value: 0.0008 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtv 34 +rt++GH +v+ +af+ +g+ ++s+s D+ v tr|A5A8P6|A5A8P6_CAEEL 210 VVRTYSGHkLPVREVAFNNEGTEFLSASFDRYV 242 689*****777*************999999987 PP >> tr|Q17872|Q17872_CAEEL Nuclear Pore complex Protein OS=Caenorhabditis elegans OX=6239 GN=npp-23 PE=1 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 10.6 0.0 0.0064 0.96 4 38 .] 162 196 .. 159 196 .. 0.91 2 ? 8.8 0.1 0.023 3.5 12 34 .. 222 245 .. 207 249 .. 0.73 Alignments for each domain: == domain 1 score: 10.6 bits; conditional E-value: 0.0064 EEEEESSSSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGHssvtslafspdgawlasGsdDgtvriWd 38 +++tG+ +++s+++ + +++G+ +g + +Wd tr|Q17872|Q17872_CAEEL 162 RTIFTGQAGIRSVCTTFGTNVVMAGDANGQITMWD 196 5689***99****************99*******9 PP == domain 2 score: 8.8 bits; conditional E-value: 0.023 SEEEEEEETTSSEEEEE.ETTSEE CS WD40 12 svtslafspdgawlasG.sdDgtv 34 vt+l+ +p ++ l+++ +dDg v tr|Q17872|Q17872_CAEEL 222 AVTALCSHPAQSNLVCCgTDDGIV 245 39****999999988662699987 PP >> tr|Q68TI8|Q68TI8_CAEEL DAF-15 OS=Caenorhabditis elegans OX=6239 GN=daf-15 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.7 0.0 0.1 16 23 38 .] 1456 1471 .. 1438 1471 .. 0.81 2 ? 3.4 0.1 1.2 1.8e+02 19 38 .] 1513 1530 .. 1505 1530 .. 0.78 Alignments for each domain: == domain 1 score: 6.7 bits; conditional E-value: 0.1 SEEEEEETTSEEEEEE CS WD40 23 awlasGsdDgtvriWd 38 +++++s +g vriWd tr|Q68TI8|Q68TI8_CAEEL 1456 EMVIACSTNGVVRIWD 1471 45778988*******9 PP == domain 2 score: 3.4 bits; conditional E-value: 1.2 ETTSSEEEEEETTSEEEEEE CS WD40 19 spdgawlasGsdDgtvriWd 38 +++g++l++ + ++vriWd tr|Q68TI8|Q68TI8_CAEEL 1513 QQNGKLLCT-G-TRSVRIWD 1530 567888865.5.9******9 PP >> sp|P34441|EMB30_CAEEL Abnormal embryogenesis protein 30 OS=Caenorhabditis elegans OX=6239 GN=emb-30 PE=1 SV=4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.0 0.0 3.3 5e+02 3 29 .. 13 39 .. 11 46 .. 0.79 2 ? 11.6 0.0 0.0029 0.44 11 36 .. 73 98 .. 65 100 .. 0.85 Alignments for each domain: == domain 1 score: 2.0 bits; conditional E-value: 3.3 EEEEEESSSSEEEEEEETTSSEEEEEE CS WD40 3 clrtltGHssvtslafspdgawlasGs 29 + rt+++ + v+s++fs+ ++++a Gs sp|P34441|EMB30_CAEEL 13 NRRTFRTPFKVSSMCFSSQNDLIALGS 39 5678887756************97566 PP == domain 2 score: 11.6 bits; conditional E-value: 0.0029 SSEEEEEEETTSSEEEEEETTSEEEE CS WD40 11 ssvtslafspdgawlasGsdDgtvri 36 ssv++l fspdg++la+++ +g +++ sp|P34441|EMB30_CAEEL 73 SSVSALHFSPDGRFLAAATSKGIIHL 98 45999**********98855999986 PP >> sp|Q9XWI6|EIF3B_CAEEL Eukaryotic translation initiation factor 3 subunit B OS=Caenorhabditis elegans OX=6239 GN=eif- # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.1 0.0 0.039 5.9 9 38 .] 242 282 .. 235 282 .. 0.85 2 ? 0.9 0.0 7.2 1.1e+03 17 29 .. 555 576 .. 536 580 .. 0.72 Alignments for each domain: == domain 1 score: 8.1 bits; conditional E-value: 0.039 SSSSEEEEEEETTSSEEEE..........E.ETTSEEEEEE CS WD40 9 GHssvtslafspdgawlas..........G.sdDgtvriWd 38 +H++v ++fsp ++l++ G +++ ++riWd sp|Q9XWI6|EIF3B_CAEEL 242 AHTNVQYIDFSPCETYLVTyaapeesnswGdCEKDSLRIWD 282 56669999*********9999999999886557*******9 PP == domain 2 score: 0.9 bits; conditional E-value: 7.2 E.........EETTSSEEEEEE CS WD40 17 a.........fspdgawlasGs 29 ++p g++++++s sp|Q9XWI6|EIF3B_CAEEL 555 IehplfnkgyWDPTGRYFVTCS 576 05555556669********998 PP >> sp|Q23232|WDR4_CAEEL tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit OS=Caenorhabditis elegans OX=6239 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.0 0.0 0.37 56 13 34 .. 158 179 .. 141 180 .. 0.80 2 ? 6.1 0.2 0.17 26 7 37 .. 194 224 .. 189 225 .. 0.74 Alignments for each domain: == domain 1 score: 5.0 bits; conditional E-value: 0.37 EEEEEEETTSSEEEEEETTSEE CS WD40 13 vtslafspdgawlasGsdDgtv 34 + ++afspdg+ l+ +++D +v sp|Q23232|WDR4_CAEEL 158 ILDVAFSPDGKRLLMADRDEKV 179 789********98766777666 PP == domain 2 score: 6.1 bits; conditional E-value: 0.17 EESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 7 ltGH.ssvtslafspdgawlasGsdDgtvriW 37 + GH v la++++ ++ +sG+ D++++ W sp|Q23232|WDR4_CAEEL 194 FLGHtEYVKTLAVQDNDSLWSSGG-DKNLYNW 224 5599666999995555555589**.**99877 PP >> tr|Q9N4T4|Q9N4T4_CAEEL Uncharacterized protein OS=Caenorhabditis elegans OX=6239 GN=CELE_Y50C1A.2 PE=4 SV=3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.0 0.3 0.0023 0.35 10 37 .. 203 226 .. 157 227 .. 0.87 Alignments for each domain: == domain 1 score: 12.0 bits; conditional E-value: 0.0023 SSSEEEEEEETTSSE....EEEEETTSEEEEE CS WD40 10 Hssvtslafspdgaw....lasGsdDgtvriW 37 vt+l + l+sGsdDg++ +W tr|Q9N4T4|Q9N4T4_CAEEL 203 A--VTCLE------McrhgLLSGSDDGNIILW 226 3..99994......44444559********** PP >> tr|Q18963|Q18963_CAEEL Cockayne Syndrome complementation group A homolog OS=Caenorhabditis elegans OX=6239 GN=csa-1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.9 0.2 0.19 28 3 35 .. 42 75 .. 40 77 .. 0.82 2 ? 2.6 0.0 2.1 3.2e+02 21 38 .] 196 213 .. 182 213 .. 0.76 3 ? 6.7 0.1 0.11 16 10 36 .. 227 254 .. 223 259 .. 0.84 Alignments for each domain: == domain 1 score: 5.9 bits; conditional E-value: 0.19 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvr 35 c +t +GH ++++++ ++ ++l+ Gs g+v tr|Q18963|Q18963_CAEEL 42 CDQTGKGHqEDISAIDIDDGDQMLLFGSHSGSVS 75 667889**888*****999999987688788886 PP == domain 2 score: 2.6 bits; conditional E-value: 2.1 TSSEEEEEETTSEEEEEE CS WD40 21 dgawlasGsdDgtvriWd 38 +++l +G +Dgt+ ++d tr|Q18963|Q18963_CAEEL 196 KHHYLYAGRRDGTIGLFD 213 4456999*99****8876 PP == domain 3 score: 6.7 bits; conditional E-value: 0.11 S.SSEEEEEEETTSSEEEEEETTSEEEE CS WD40 10 H.ssvtslafspdgawlasGsdDgtvri 36 H s +++l+ s dg+ l+s+++ g +++ tr|Q18963|Q18963_CAEEL 227 HkSQIYGLKISADGHRLISADRSGYIHV 254 8555**************9998998887 PP >> tr|P91364|P91364_CAEEL Uncharacterized protein OS=Caenorhabditis elegans OX=6239 GN=CELE_K06A9.2 PE=1 SV=3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.2 0.0 0.036 5.5 12 32 .. 128 149 .. 117 163 .. 0.75 2 ? 2.4 0.0 2.4 3.6e+02 12 34 .. 382 407 .. 370 413 .. 0.67 3 ? 2.1 0.7 3 4.5e+02 12 24 .. 478 494 .. 451 506 .. 0.69 Alignments for each domain: == domain 1 score: 8.2 bits; conditional E-value: 0.036 SEEEEEEETTSSEE.EEEETTS CS WD40 12 svtslafspdgawl.asGsdDg 32 + s+ fspd + l ++Gs+D+ tr|P91364|P91364_CAEEL 128 KILSVEFSPDDSHLlVTGSRDQ 149 3999*********7369*9874 PP == domain 2 score: 2.4 bits; conditional E-value: 2.4 S.E.EEEEEETTSSEE.EEEETTSEE CS WD40 12 s.v.tslafspdgawl.asGsdDgtv 34 s v +s++ pd+++l ++G+ +++v tr|P91364|P91364_CAEEL 382 SlVdSSMCLTPDNKYLyVTGTTKRSV 407 347788999******95599544433 PP == domain 3 score: 2.1 bits; conditional E-value: 3 S....EEEEEEETTSSE CS WD40 12 s....vtslafspdgaw 24 + v+++a +p+++ tr|P91364|P91364_CAEEL 478 HfdgpVSCVALHPYQNS 494 03345888888888775 PP >> tr|Q9BL53|Q9BL53_CAEEL TUBby-related OS=Caenorhabditis elegans OX=6239 GN=tub-2 PE=1 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.9 0.1 0.0052 0.78 6 37 .. 64 96 .. 60 97 .. 0.92 2 ? 1.3 0.2 5.4 8.1e+02 13 35 .. 115 137 .. 109 138 .. 0.82 Alignments for each domain: == domain 1 score: 10.9 bits; conditional E-value: 0.0052 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 6 tltGH.ssvtslafspdgawlasGsdDgtvriW 37 l+GH + ++ + ++++++ las++ g +++W tr|Q9BL53|Q9BL53_CAEEL 64 NLRGHhNAIRMVTWNKSQSKLASCDASGIIYVW 96 589**999****************99******* PP == domain 2 score: 1.3 bits; conditional E-value: 5.4 EEEEEEETTSSEEEEEETTSEEE CS WD40 13 vtslafspdgawlasGsdDgtvr 35 v++l++sp g + + dD+ v tr|Q9BL53|Q9BL53_CAEEL 115 VSDLSWSPCGGSALICYDDNFVL 137 899********988899898776 PP >> tr|O17001|O17001_CAEEL Uncharacterized protein OS=Caenorhabditis elegans OX=6239 GN=CELE_T23B12.6 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.2 0.1 0.16 24 5 38 .] 435 468 .. 431 468 .. 0.69 2 ? 5.2 0.0 0.32 49 4 38 .] 557 586 .. 545 586 .. 0.67 Alignments for each domain: == domain 1 score: 6.2 bits; conditional E-value: 0.16 EEEESS.SSEEEEEEETTSSE.EEEEETTSEEEEEE CS WD40 5 rtltGH.ssvtslafspdgaw.lasGsdDgtvriWd 38 +++ H s+v ++ + + ++ +s+ ++vr W+ tr|O17001|O17001_CAEEL 435 QSYNIHnSPVQRVSL--NTSHlISVCSEYNHVRSWN 468 567779677877722..3333145699********8 PP == domain 2 score: 5.2 bits; conditional E-value: 0.32 EEEEESSSSEEEEE.EETTSSEEEEE.ETTSEEEEEE CS WD40 4 lrtltGHssvtsla.fspdgawlasG.sdDgtvriWd 38 +++l+G+ + s+ ++l++G + +g+v +Wd tr|O17001|O17001_CAEEL 557 VHELDGQ------KlGSRLRKYLFCGnG-NGSVQVWD 586 3333333......033444566999*66.*******9 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (38 nodes) Target sequences: 20008 (8229220 residues searched) Passed MSV filter: 571 (0.0285386); expected 400.2 (0.02) Passed bias filter: 500 (0.02499); expected 400.2 (0.02) Passed Vit filter: 169 (0.00844662); expected 20.0 (0.001) Passed Fwd filter: 136 (0.00679728); expected 0.2 (1e-05) Initial search space (Z): 20008 [actual number of targets] Domain search space (domZ): 133 [number of targets reported over threshold] # CPU time: 0.17u 0.01s 00:00:00.18 Elapsed: 00:00:00.08 # Mc/sec: 3908.88 // [ok]