# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/WD40.hmm.txt # target sequence database: proteomes/Ciona_intestinalis.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: WD40 [M=38] Accession: PF00400.32 Description: WD domain, G-beta repeat Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.9e-69 225.6 13.5 7.9e-09 35.9 0.0 8.1 8 tr|F6WTM4|F6WTM4_CIOIN dynein assembly factor with WDR 1.7e-62 205.8 14.1 6.7e-10 39.3 0.1 7.3 7 tr|F6ZM65|F6ZM65_CIOIN Uncharacterized protein OS=Ciona 8.1e-62 203.6 33.6 6.4e-09 36.2 0.1 9.0 8 tr|F7AMH0|F7AMH0_CIOIN Uncharacterized protein OS=Ciona 9.8e-62 203.3 21.4 5.2e-10 39.7 0.2 7.3 7 tr|F6SZ54|F6SZ54_CIOIN WD repeat-containing protein 5 O 2.2e-60 199.1 37.7 6.2e-08 33.1 0.3 11.8 11 tr|F6WWW4|F6WWW4_CIOIN Uncharacterized protein OS=Ciona 1.9e-58 193.0 19.1 1.3e-09 38.4 0.2 7.9 7 tr|H2XLI2|H2XLI2_CIOIN Lissencephaly-1 homolog OS=Ciona 1.8e-52 174.0 19.0 1.3e-12 47.9 0.1 5.4 5 tr|F7AWC6|F7AWC6_CIOIN Uncharacterized protein OS=Ciona 6.7e-52 172.2 24.6 6e-10 39.5 0.3 8.5 8 tr|F6QXC2|F6QXC2_CIOIN Uncharacterized protein OS=Ciona 2.8e-49 163.9 14.5 4e-08 33.7 0.0 7.3 7 tr|F6WWK0|F6WWK0_CIOIN Uncharacterized protein OS=Ciona 7.3e-49 162.6 37.1 4.4e-09 36.7 3.6 7.2 7 tr|F6VEB2|F6VEB2_CIOIN Probable cytosolic iron-sulfur p 1.3e-46 155.5 23.8 7.9e-08 32.8 0.1 7.2 7 tr|F6SK29|F6SK29_CIOIN guanine nucleotide-binding prote 2.5e-43 145.1 99.6 0.00083 20.0 0.3 27.8 20 tr|F6UG85|F6UG85_CIOIN Uncharacterized protein OS=Ciona 4.1e-43 144.4 11.8 6.2e-09 36.2 0.0 6.7 6 tr|F6YGZ1|F6YGZ1_CIOIN Uncharacterized protein OS=Ciona 6.7e-43 143.7 27.8 4e-08 33.7 0.0 7.2 7 tr|A0A1W2WII7|A0A1W2WII7_CIOIN WD repeat-containing protein 38 9.7e-43 143.2 18.2 2.8e-09 37.3 0.4 7.4 7 tr|F7A5V7|F7A5V7_CIOIN Uncharacterized protein OS=Ciona 8.7e-42 140.2 27.3 1.1e-08 35.4 0.0 7.1 7 tr|H2XPM6|H2XPM6_CIOIN WD repeat-containing protein 61- 1.5e-41 139.5 20.7 8.7e-08 32.6 0.7 8.0 6 tr|F6W1H2|F6W1H2_CIOIN Coatomer subunit alpha OS=Ciona 5.4e-41 137.7 15.6 3.1e-05 24.5 0.0 11.8 10 tr|F7ASK1|F7ASK1_CIOIN Uncharacterized protein OS=Ciona 8.3e-41 137.1 17.5 4.1e-05 24.2 0.2 9.6 8 tr|L7N0S3|L7N0S3_CIOIN Uncharacterized protein OS=Ciona 1.6e-40 136.2 12.2 2.8e-05 24.7 0.1 7.2 7 tr|F6PW34|F6PW34_CIOIN U5 small nuclear ribonucleoprote 2.6e-38 129.2 10.9 4.9e-09 36.6 0.1 8.3 6 tr|F7BKT8|F7BKT8_CIOIN Coatomer subunit beta' OS=Ciona 3.8e-38 128.7 50.6 0.00023 21.8 0.4 18.6 14 tr|F7AB73|F7AB73_CIOIN Uncharacterized protein OS=Ciona 1.1e-37 127.3 20.5 6.2e-06 26.8 0.0 7.7 7 tr|Q86SD3|Q86SD3_CIOIN Beta-transducin repeat-containin 1.2e-37 127.1 11.3 4.1e-10 40.0 1.1 6.1 5 tr|F6Z7E0|F6Z7E0_CIOIN Katanin p80 WD40 repeat-containi 2.5e-37 126.1 22.8 1.2e-07 32.1 0.0 7.2 7 tr|H2XZV4|H2XZV4_CIOIN guanine nucleotide-binding prote 2.8e-37 125.9 25.2 2.6e-06 28.0 0.9 6.7 6 tr|F6SP32|F6SP32_CIOIN Uncharacterized protein OS=Ciona 9.7e-37 124.2 21.2 3.5e-08 33.9 0.3 7.4 7 tr|H2Y0G9|H2Y0G9_CIOIN Uncharacterized protein OS=Ciona 8.1e-36 121.3 7.6 1.4e-06 28.8 0.0 6.8 6 tr|F6WIG7|F6WIG7_CIOIN WD40 repeat-containing protein S 9.1e-36 121.2 20.9 1.2e-08 35.3 0.0 10.8 9 tr|F6VRH3|F6VRH3_CIOIN Uncharacterized protein OS=Ciona 1.7e-35 120.3 9.1 6.3e-07 29.9 0.1 7.6 7 tr|F7A1R5|F7A1R5_CIOIN Uncharacterized protein OS=Ciona 2e-35 120.1 16.6 3.8e-06 27.4 0.0 7.5 7 tr|F7A7C3|F7A7C3_CIOIN Uncharacterized protein OS=Ciona 2.1e-35 120.0 31.3 0.00026 21.6 0.8 11.2 9 tr|F6Q9C5|F6Q9C5_CIOIN Uncharacterized protein OS=Ciona 3.4e-35 119.4 16.4 8.4e-07 29.5 0.2 8.0 7 tr|F7AE45|F7AE45_CIOIN Uncharacterized protein OS=Ciona 4.5e-35 119.0 21.8 0.00018 22.1 0.1 7.2 7 tr|F7AW67|F7AW67_CIOIN guanine nucleotide-binding prote 6e-34 115.4 34.8 4.3e-06 27.3 4.3 7.7 7 tr|F6TQ79|F6TQ79_CIOIN Uncharacterized protein OS=Ciona 7e-34 115.2 15.8 4e-06 27.4 0.3 7.3 7 tr|F6W8G0|F6W8G0_CIOIN Uncharacterized protein OS=Ciona 1.3e-33 114.4 11.4 2.3e-05 25.0 0.0 8.1 8 tr|F6TFD0|F6TFD0_CIOIN target of rapamycin complex subu 1.8e-31 107.6 1.5 2.6e-06 28.0 0.0 6.4 6 tr|F6SML9|F6SML9_CIOIN Uncharacterized protein OS=Ciona 7.1e-31 105.7 9.9 1.3e-06 28.9 0.1 6.8 6 tr|F6W1C5|F6W1C5_CIOIN Uncharacterized protein OS=Ciona 7.6e-30 102.4 43.7 1.6e-09 38.1 3.8 9.3 8 tr|F6WHS8|F6WHS8_CIOIN Protein HIRA OS=Ciona intestinal 8.5e-30 102.3 27.6 0.00012 22.7 0.2 6.4 6 tr|F6QHS0|F6QHS0_CIOIN Uncharacterized protein OS=Ciona 2.1e-29 101.0 8.9 5.1e-08 33.4 0.2 5.6 5 tr|F6UHI7|F6UHI7_CIOIN Uncharacterized protein OS=Ciona 2.2e-29 101.0 18.6 1.9e-06 28.4 0.3 5.6 5 tr|F6Z465|F6Z465_CIOIN Uncharacterized protein OS=Ciona 2.3e-29 100.9 8.3 3.4e-06 27.6 0.0 6.8 6 tr|F7BQ53|F7BQ53_CIOIN Uncharacterized protein OS=Ciona 1.4e-28 98.4 25.5 7.6e-07 29.6 1.7 8.1 7 tr|F7A3E4|F7A3E4_CIOIN zinc finger protein isoform X1 O 6.2e-28 96.4 29.9 8.8e-06 26.3 0.7 7.4 7 tr|F6RBK2|F6RBK2_CIOIN Ribosome biogenesis protein WDR1 1e-27 95.7 7.9 4.8e-06 27.1 0.1 6.5 6 tr|F6UNP2|F6UNP2_CIOIN Uncharacterized protein OS=Ciona 1.3e-27 95.4 14.7 3.5e-07 30.7 0.0 5.8 5 tr|A0A1W3JEA6|A0A1W3JEA6_CIOIN histone-binding protein RBBP4 OS 1.8e-27 94.9 20.2 0.00028 21.5 0.1 9.2 8 tr|H2XNQ0|H2XNQ0_CIOIN Uncharacterized protein OS=Ciona 9.3e-27 92.7 38.0 6.2e-07 29.9 0.2 12.6 10 tr|F6ZHD7|F6ZHD7_CIOIN Uncharacterized protein OS=Ciona 1.5e-26 92.0 24.0 0.0015 19.2 0.0 11.1 9 tr|F6R3V0|F6R3V0_CIOIN Uncharacterized protein OS=Ciona 8e-26 89.7 1.4 3.3e-06 27.6 0.1 5.7 5 tr|F6QDG1|F6QDG1_CIOIN Uncharacterized protein OS=Ciona 9.3e-26 89.5 13.2 2.6e-05 24.8 0.6 7.5 6 tr|F6TVK8|F6TVK8_CIOIN Uncharacterized protein OS=Ciona 3e-25 87.9 9.7 1.5e-08 35.0 0.2 7.1 6 tr|F6QH89|F6QH89_CIOIN Uncharacterized protein OS=Ciona 4.2e-25 87.4 16.5 0.00043 20.9 0.0 6.8 6 tr|F6ZTE1|F6ZTE1_CIOIN Uncharacterized protein OS=Ciona 9.9e-25 86.2 11.7 2.7e-07 31.1 0.0 5.4 5 tr|F6RKQ2|F6RKQ2_CIOIN Uncharacterized protein OS=Ciona 1e-24 86.2 15.2 0.00027 21.6 0.1 6.7 6 tr|F6TSV6|F6TSV6_CIOIN Uncharacterized protein OS=Ciona 1.5e-24 85.7 11.7 1.6e-06 28.7 1.9 6.6 6 tr|F6TX35|F6TX35_CIOIN chromatin assembly factor 1 subu 3.2e-24 84.6 9.0 2.5e-07 31.1 0.1 6.6 6 tr|H2XZE5|H2XZE5_CIOIN Uncharacterized protein OS=Ciona 1.2e-23 82.9 21.6 5.9e-05 23.7 0.3 8.4 7 tr|F6ZGT0|F6ZGT0_CIOIN WD repeat-containing protein 44- 3e-23 81.6 7.0 3.2e-08 34.0 0.0 6.6 6 tr|F6VQ02|F6VQ02_CIOIN Uncharacterized protein OS=Ciona 4.3e-23 81.1 7.7 3.9e-07 30.6 0.1 7.0 6 tr|F6YXI8|F6YXI8_CIOIN Ribosome biogenesis protein BOP1 6.2e-23 80.5 1.1 7.5e-05 23.3 0.0 5.7 5 tr|F6TIU3|F6TIU3_CIOIN Eukaryotic translation initiatio 8.6e-23 80.1 15.5 5.8e-05 23.7 0.1 8.9 7 tr|F7AV41|F7AV41_CIOIN Uncharacterized protein OS=Ciona 9.2e-23 80.0 11.5 1.3e-07 32.1 0.2 6.4 6 tr|Q4H3S8|Q4H3S8_CIOIN Cockayne syndrome 1 homolog OS=C 9.4e-23 80.0 13.7 0.00057 20.5 0.2 7.2 7 tr|F6Y9U9|F6Y9U9_CIOIN Uncharacterized protein OS=Ciona 1.8e-21 76.0 23.9 1.7e-05 25.3 1.1 7.1 6 tr|F7B1X4|F7B1X4_CIOIN Uncharacterized protein OS=Ciona 1.2e-20 73.4 32.2 1.9e-06 28.4 2.8 10.5 8 tr|F6XCG6|F6XCG6_CIOIN Uncharacterized protein OS=Ciona 1.2e-20 73.4 15.8 2.3e-06 28.1 0.4 6.4 6 tr|F6ZUD0|F6ZUD0_CIOIN Uncharacterized protein OS=Ciona 2.8e-20 72.1 20.6 0.0009 19.9 0.1 8.8 6 tr|F6YFF3|F6YFF3_CIOIN Uncharacterized protein OS=Ciona 2.9e-20 72.1 18.4 0.00052 20.7 0.0 7.6 7 tr|F7ART8|F7ART8_CIOIN Uncharacterized protein OS=Ciona 3e-20 72.1 9.7 3.2e-07 30.8 0.8 6.3 5 tr|Q1RPW9|Q1RPW9_CIOIN Zinc finger protein OS=Ciona int 3.4e-20 71.9 22.2 0.00013 22.6 0.1 6.7 6 tr|F6X2C4|F6X2C4_CIOIN protein SEC13 homolog OS=Ciona i 6.4e-20 71.0 17.7 2.8e-06 27.9 0.3 5.3 4 tr|F6SIX8|F6SIX8_CIOIN Uncharacterized protein OS=Ciona 1.1e-19 70.3 11.5 2.8e-06 27.8 0.2 6.5 5 tr|F7ATG5|F7ATG5_CIOIN Uncharacterized protein OS=Ciona 1.5e-19 69.8 20.7 6.5e-05 23.5 0.1 8.2 5 tr|F7ABS5|F7ABS5_CIOIN Uncharacterized protein OS=Ciona 1.7e-19 69.7 13.1 0.00011 22.8 0.0 7.2 5 tr|F6YNT4|F6YNT4_CIOIN Coronin OS=Ciona intestinalis OX 2e-19 69.5 16.6 0.0038 17.9 0.1 7.6 7 tr|Q1RPU5|Q1RPU5_CIOIN Zinc finger protein OS=Ciona int 2.1e-19 69.4 13.5 0.00018 22.1 0.0 6.7 6 tr|F6RFI3|F6RFI3_CIOIN Uncharacterized protein OS=Ciona 2.2e-19 69.3 15.7 0.003 18.2 0.4 7.5 7 tr|F6WD89|F6WD89_CIOIN Uncharacterized protein OS=Ciona 2.7e-19 69.0 11.8 0.0012 19.5 0.0 10.9 9 tr|F6VRS6|F6VRS6_CIOIN Uncharacterized protein OS=Ciona 6.4e-19 67.8 15.1 0.0054 17.5 0.6 7.8 7 tr|Q4H3F0|Q4H3F0_CIOIN Groucho OS=Ciona intestinalis OX 7.4e-19 67.7 10.8 4.4e-05 24.1 0.2 5.9 5 tr|F6SS00|F6SS00_CIOIN Uncharacterized protein OS=Ciona 1.3e-18 66.8 5.8 3e-05 24.6 0.0 5.9 5 tr|H2XTW5|H2XTW5_CIOIN Uncharacterized protein OS=Ciona 1.1e-17 63.9 15.5 0.0008 20.1 0.1 7.1 6 tr|F6THM1|F6THM1_CIOIN Uncharacterized protein OS=Ciona 1.8e-17 63.2 21.3 0.0076 17.0 0.0 8.4 6 tr|F6QXK6|F6QXK6_CIOIN Uncharacterized protein OS=Ciona 3.4e-17 62.4 26.8 5.8e-05 23.7 0.2 7.2 7 tr|H2XQ91|H2XQ91_CIOIN Uncharacterized protein OS=Ciona 4.9e-17 61.9 6.9 5.4e-06 26.9 0.1 7.2 6 tr|F6TSM0|F6TSM0_CIOIN Uncharacterized protein OS=Ciona 9.4e-17 61.0 0.6 1.1e-05 25.9 0.1 4.1 3 tr|H2XRA7|H2XRA7_CIOIN Uncharacterized protein OS=Ciona 6.4e-16 58.4 13.5 0.00023 21.8 0.1 6.7 5 tr|F6YJE0|F6YJE0_CIOIN Uncharacterized protein OS=Ciona 7.8e-16 58.1 15.4 8.1e-05 23.2 0.0 6.0 4 tr|F6V4K8|F6V4K8_CIOIN Uncharacterized protein OS=Ciona 1.6e-15 57.1 21.7 0.0035 18.1 0.0 9.2 5 tr|F6S7I2|F6S7I2_CIOIN Uncharacterized protein OS=Ciona 1.7e-15 57.0 15.5 0.0056 17.4 0.0 9.4 9 tr|A0A1W3JJK5|A0A1W3JJK5_CIOIN WD repeat-containing protein WRA 6.2e-15 55.2 15.3 0.00065 20.4 0.2 5.0 4 tr|F6QAP0|F6QAP0_CIOIN Uncharacterized protein OS=Ciona 7.2e-15 55.0 19.3 1.2e-05 25.8 0.1 7.0 6 tr|H2XK82|H2XK82_CIOIN Uncharacterized protein OS=Ciona 7.4e-15 55.0 12.5 0.0045 17.7 0.2 7.3 5 tr|F6Z9J5|F6Z9J5_CIOIN Uncharacterized protein OS=Ciona 1.4e-14 54.1 8.2 2e-05 25.1 0.4 3.5 3 tr|F6SHP0|F6SHP0_CIOIN Uncharacterized protein OS=Ciona 1.4e-14 54.1 2.4 0.0054 17.5 0.0 6.2 4 tr|F6WUC3|F6WUC3_CIOIN Uncharacterized protein OS=Ciona 2.6e-14 53.3 12.7 0.0003 21.4 0.0 6.7 6 tr|F6TYU6|F6TYU6_CIOIN Uncharacterized protein OS=Ciona 2.7e-14 53.2 7.8 0.0002 22.0 0.1 7.0 5 tr|F6RZ17|F6RZ17_CIOIN Uncharacterized protein OS=Ciona 3.4e-14 52.9 2.7 1.2e-07 32.2 0.2 3.1 3 tr|H2XZL1|H2XZL1_CIOIN Uncharacterized protein OS=Ciona 3.7e-14 52.8 1.5 0.00018 22.1 0.4 4.2 3 tr|H2XRN7|H2XRN7_CIOIN Uncharacterized protein OS=Ciona 3.9e-14 52.7 9.1 0.038 14.8 0.0 7.5 5 tr|F6TZ23|F6TZ23_CIOIN Uncharacterized protein OS=Ciona 4.1e-14 52.6 14.9 7e-07 29.8 0.0 4.9 3 tr|F6UZU2|F6UZU2_CIOIN polycomb protein eed-like OS=Cio 6.9e-14 51.9 9.5 0.04 14.7 0.1 6.9 5 tr|F6R982|F6R982_CIOIN Uncharacterized protein OS=Ciona 9.5e-14 51.5 8.6 0.0023 18.6 0.0 7.1 6 tr|F6WK69|F6WK69_CIOIN Uncharacterized protein OS=Ciona 1.4e-13 50.9 10.1 0.00015 22.4 0.5 5.6 4 tr|A0A1W5BFR1|A0A1W5BFR1_CIOIN WD repeat-containing protein 13- 1.4e-13 50.9 15.3 0.00014 22.4 0.0 6.6 5 tr|H2Y0Z1|H2Y0Z1_CIOIN Uncharacterized protein OS=Ciona 1.7e-13 50.7 15.0 0.00047 20.8 0.1 5.9 5 tr|F6YBW7|F6YBW7_CIOIN mRNA export factor-like OS=Ciona 9.8e-13 48.3 0.2 5.2e-06 27.0 0.0 3.4 3 tr|H2Y0Y4|H2Y0Y4_CIOIN Coronin OS=Ciona intestinalis OX 1.4e-12 47.8 3.4 1.3e-08 35.3 0.2 2.9 2 tr|F6Y6X2|F6Y6X2_CIOIN Uncharacterized protein OS=Ciona 1.5e-12 47.7 10.9 0.0001 22.9 0.3 6.2 4 tr|F6WY47|F6WY47_CIOIN Uncharacterized protein OS=Ciona 1.8e-12 47.5 20.0 2.3e-07 31.3 1.0 5.4 3 tr|F6YUP9|F6YUP9_CIOIN Uncharacterized protein OS=Ciona 3.6e-12 46.5 12.7 6.8e-05 23.5 0.1 5.4 4 tr|F6U8U5|F6U8U5_CIOIN Uncharacterized protein OS=Ciona 4.1e-12 46.3 8.9 0.0024 18.6 0.2 5.6 5 tr|F6VYZ5|F6VYZ5_CIOIN Uncharacterized protein OS=Ciona 5.1e-12 46.0 16.9 0.0042 17.8 0.0 6.2 5 tr|F6T2X1|F6T2X1_CIOIN Uncharacterized protein OS=Ciona 5.2e-12 46.0 1.2 0.0038 17.9 0.0 7.0 5 tr|F6ZAP9|F6ZAP9_CIOIN Uncharacterized protein OS=Ciona 1.5e-11 44.5 0.1 0.0063 17.2 0.0 4.7 3 tr|F6WAZ5|F6WAZ5_CIOIN Uncharacterized protein OS=Ciona 2.1e-11 44.1 2.1 1.1e-05 25.9 0.0 3.3 2 tr|F6ZML6|F6ZML6_CIOIN Uncharacterized protein OS=Ciona 3.5e-11 43.4 4.5 0.00036 21.2 0.0 4.8 4 tr|F6UT21|F6UT21_CIOIN Uncharacterized protein OS=Ciona 3.7e-11 43.3 11.8 0.24 12.2 0.0 6.8 5 tr|F6QRG3|F6QRG3_CIOIN Uncharacterized protein OS=Ciona 3.7e-11 43.3 9.0 9.4e-05 23.0 0.3 6.4 4 tr|F6XFZ5|F6XFZ5_CIOIN Uncharacterized protein OS=Ciona 8.1e-11 42.2 13.6 0.00015 22.4 0.1 4.3 3 tr|F6VUV2|F6VUV2_CIOIN Uncharacterized protein OS=Ciona 1.4e-10 41.4 3.6 0.00017 22.2 0.1 4.7 3 tr|H2XYB7|H2XYB7_CIOIN Uncharacterized protein OS=Ciona 3.9e-10 40.0 1.8 0.014 16.2 0.5 4.7 4 tr|H2XXT9|H2XXT9_CIOIN Uncharacterized protein OS=Ciona 4.8e-10 39.8 15.0 0.0003 21.4 0.2 5.3 4 tr|F6PM95|F6PM95_CIOIN Uncharacterized protein OS=Ciona 4.8e-10 39.8 14.5 0.0003 21.4 0.8 5.6 4 tr|F6ZSL1|F6ZSL1_CIOIN Uncharacterized protein OS=Ciona 4.9e-10 39.7 15.8 0.072 13.9 0.0 7.8 5 tr|F6Y0M4|F6Y0M4_CIOIN U3 small nucleolar RNA-associate 5.1e-10 39.7 24.4 0.0035 18.0 0.2 6.6 5 tr|F6XQ09|F6XQ09_CIOIN phosphoinositide 3-kinase regula 6e-10 39.5 12.5 3.6e-05 24.3 0.3 3.9 3 tr|H2XZN8|H2XZN8_CIOIN Uncharacterized protein OS=Ciona 6.1e-10 39.4 0.4 0.079 13.8 0.0 4.4 3 tr|F7A8S2|F7A8S2_CIOIN Uncharacterized protein OS=Ciona 6.2e-10 39.4 3.8 0.1 13.4 0.0 5.5 3 tr|F7BBJ6|F7BBJ6_CIOIN Uncharacterized protein OS=Ciona 6.7e-10 39.3 2.3 0.0034 18.1 0.0 4.8 3 tr|H2XPX9|H2XPX9_CIOIN Uncharacterized protein OS=Ciona 8.9e-10 38.9 18.4 0.04 14.7 1.0 6.5 5 tr|F7BML6|F7BML6_CIOIN Uncharacterized protein OS=Ciona 9.4e-10 38.8 5.8 0.23 12.3 0.0 6.0 4 tr|F6Q6I4|F6Q6I4_CIOIN Uncharacterized protein OS=Ciona 9.6e-10 38.8 11.4 0.013 16.2 0.3 5.2 4 tr|A0A1W3JPZ4|A0A1W3JPZ4_CIOIN prolactin regulatory element-bin 1e-09 38.7 14.6 0.28 12.0 0.3 6.7 6 tr|F6QZI8|F6QZI8_CIOIN Uncharacterized protein OS=Ciona 1.9e-09 37.9 7.4 0.00022 21.8 0.0 3.5 3 tr|F6ZEC7|F6ZEC7_CIOIN Uncharacterized protein OS=Ciona 2.5e-09 37.5 0.0 0.0036 18.0 0.0 4.1 3 tr|H2Y1F1|H2Y1F1_CIOIN Uncharacterized protein OS=Ciona 7.2e-09 36.0 12.5 0.00055 20.6 0.2 5.1 3 tr|F6YUN5|F6YUN5_CIOIN Uncharacterized protein OS=Ciona 7.9e-09 35.9 4.6 0.00032 21.3 0.4 4.7 4 tr|H2XLX0|H2XLX0_CIOIN Uncharacterized protein OS=Ciona 1.4e-08 35.1 24.4 0.00083 20.0 0.7 6.7 5 tr|F6TEZ1|F6TEZ1_CIOIN Actin-related protein 2/3 comple 1.9e-08 34.7 11.0 0.34 11.8 0.1 5.1 4 tr|H2XTJ6|H2XTJ6_CIOIN Uncharacterized protein OS=Ciona 1.9e-08 34.7 0.3 0.0023 18.6 0.1 3.9 3 tr|F7ADJ3|F7ADJ3_CIOIN Uncharacterized protein OS=Ciona 2.3e-08 34.5 1.4 0.003 18.3 0.4 3.5 3 tr|F7BL69|F7BL69_CIOIN Uncharacterized protein OS=Ciona 3.4e-08 33.9 5.2 0.076 13.8 0.6 3.6 3 tr|F6Y5P5|F6Y5P5_CIOIN Uncharacterized protein OS=Ciona 3.8e-08 33.7 6.0 7.1 7.6 0.0 6.5 5 tr|F6UW46|F6UW46_CIOIN Serine/threonine-protein phospha 5.3e-08 33.3 4.8 0.23 12.3 0.4 5.4 4 tr|F6YXX9|F6YXX9_CIOIN Uncharacterized protein OS=Ciona 2.5e-07 31.2 6.7 9.5e-06 26.2 0.0 3.8 2 tr|F6SNN1|F6SNN1_CIOIN nucleoporin Nup37 OS=Ciona intes 3.4e-07 30.8 5.2 0.0048 17.6 0.1 3.9 3 tr|F6SHP7|F6SHP7_CIOIN Uncharacterized protein OS=Ciona 3.4e-07 30.7 5.0 0.85 10.5 0.1 5.1 4 tr|H2XS95|H2XS95_CIOIN Uncharacterized protein OS=Ciona 3.6e-07 30.7 1.7 21 6.1 0.0 7.5 7 tr|F6U8H5|F6U8H5_CIOIN Uncharacterized protein OS=Ciona 3.8e-07 30.6 0.4 0.00022 21.9 0.0 3.6 2 tr|F7AXC6|F7AXC6_CIOIN Uncharacterized protein OS=Ciona 4.1e-07 30.5 7.7 0.067 14.0 0.0 6.2 5 tr|H2Y1I4|H2Y1I4_CIOIN Uncharacterized protein OS=Ciona 6.8e-07 29.8 0.2 4.3e-06 27.3 0.1 2.2 1 tr|H2Y1T2|H2Y1T2_CIOIN Uncharacterized protein OS=Ciona 1.1e-06 29.2 10.8 1.3 9.9 0.4 6.2 4 tr|F6X056|F6X056_CIOIN Uncharacterized protein OS=Ciona 1.3e-06 29.0 16.2 0.88 10.5 0.1 7.3 6 tr|F7A027|F7A027_CIOIN Uncharacterized protein OS=Ciona 1.8e-06 28.4 0.4 0.033 15.0 0.0 3.5 3 tr|F6W7W0|F6W7W0_CIOIN Uncharacterized protein OS=Ciona 2.2e-06 28.2 8.4 0.0066 17.2 1.4 4.7 2 tr|F6Z0E0|F6Z0E0_CIOIN DDB1- and CUL4-associated factor 5.5e-06 26.9 9.0 0.016 16.0 0.2 4.4 3 tr|F7A8L3|F7A8L3_CIOIN Uncharacterized protein OS=Ciona 5.8e-06 26.8 20.2 0.0049 17.6 0.0 9.4 3 tr|H2XU88|H2XU88_CIOIN Uncharacterized protein OS=Ciona 1.2e-05 25.9 13.1 0.083 13.7 1.3 5.5 3 tr|F7B0J8|F7B0J8_CIOIN Uncharacterized protein OS=Ciona 1.2e-05 25.8 13.9 0.048 14.4 0.1 5.9 3 tr|F6RTW0|F6RTW0_CIOIN WD repeat domain phosphoinositid 1.6e-05 25.5 0.2 4.3 8.3 0.0 5.0 3 tr|F6YG27|F6YG27_CIOIN Uncharacterized protein OS=Ciona 3.4e-05 24.4 0.1 5.2 8.0 0.0 5.1 3 tr|H2XTN0|H2XTN0_CIOIN Uncharacterized protein OS=Ciona 4e-05 24.2 3.0 1.8 9.5 0.1 4.9 3 tr|F6WLW9|F6WLW9_CIOIN Uncharacterized protein OS=Ciona 5.3e-05 23.8 1.2 0.6 11.0 0.1 3.3 2 tr|F7BD94|F7BD94_CIOIN Uncharacterized protein OS=Ciona 0.00011 22.8 18.2 0.021 15.6 0.5 5.4 3 tr|F6YIU2|F6YIU2_CIOIN Uncharacterized protein OS=Ciona 0.00014 22.4 0.1 0.00042 20.9 0.1 1.9 1 tr|F6ZEC1|F6ZEC1_CIOIN Uncharacterized protein OS=Ciona 0.00015 22.4 6.5 0.42 11.5 0.1 4.8 3 tr|F7B4Q5|F7B4Q5_CIOIN Uncharacterized protein OS=Ciona 0.00017 22.2 0.0 0.12 13.2 0.0 3.8 2 tr|F6ZN43|F6ZN43_CIOIN Uncharacterized protein OS=Ciona 0.00021 21.9 4.7 0.4 11.5 0.1 5.4 3 tr|F6Q2Q3|F6Q2Q3_CIOIN Uncharacterized protein OS=Ciona 0.00028 21.5 18.6 15 6.6 0.0 8.6 5 tr|F6U441|F6U441_CIOIN Uncharacterized protein OS=Ciona 0.00034 21.3 4.4 0.00045 20.9 1.1 3.0 1 tr|F6SWH7|F6SWH7_CIOIN Vacuolar protein sorting-associa 0.00036 21.2 0.6 0.38 11.6 0.1 3.7 3 tr|H2Y2H8|H2Y2H8_CIOIN Uncharacterized protein OS=Ciona 0.00059 20.5 1.6 0.089 13.6 0.0 4.6 2 tr|F6R815|F6R815_CIOIN Uncharacterized protein OS=Ciona 0.00075 20.2 6.2 2.7 8.9 0.0 5.4 4 tr|F6ZWA3|F6ZWA3_CIOIN Uncharacterized protein OS=Ciona 0.00084 20.0 3.8 0.71 10.7 0.1 3.8 3 tr|F6SFZ3|F6SFZ3_CIOIN Uncharacterized protein OS=Ciona 0.0015 19.2 1.4 1 10.3 0.0 3.8 2 tr|H2XZ64|H2XZ64_CIOIN Uncharacterized protein OS=Ciona 0.002 18.8 0.5 1.6 9.6 0.1 4.3 2 tr|F7A7B2|F7A7B2_CIOIN Uncharacterized protein OS=Ciona 0.0026 18.4 0.0 8 7.4 0.0 3.3 2 tr|F6U4Y8|F6U4Y8_CIOIN Uncharacterized protein OS=Ciona 0.0036 18.0 0.1 0.011 16.5 0.1 1.8 1 tr|H2XN44|H2XN44_CIOIN Uncharacterized protein OS=Ciona 0.0066 17.2 0.4 5.5 7.9 0.1 3.8 3 tr|H2XJV1|H2XJV1_CIOIN WD repeat-containing protein 25 ------ inclusion threshold ------ 0.011 16.4 0.2 1.1 10.1 0.0 2.3 2 tr|H2XJI2|H2XJI2_CIOIN Uncharacterized protein OS=Ciona 0.017 15.9 3.3 0.017 15.9 3.3 5.4 4 tr|F6WEC1|F6WEC1_CIOIN WD repeat-containing protein 43 0.026 15.3 3.0 5.5 7.9 0.0 4.7 3 tr|H2XQY4|H2XQY4_CIOIN Uncharacterized protein OS=Ciona 0.029 15.2 0.3 0.68 10.8 0.1 2.6 2 tr|F7A6H8|F7A6H8_CIOIN Uncharacterized protein OS=Ciona 0.047 14.5 7.0 0.2 12.5 0.0 4.3 2 tr|F7AAA1|F7AAA1_CIOIN Uncharacterized protein OS=Ciona 0.1 13.4 0.0 6.8 7.6 0.0 3.3 2 tr|H2Y2L9|H2Y2L9_CIOIN Uncharacterized protein OS=Ciona 0.24 12.2 4.1 2.4 9.0 0.0 3.1 2 tr|F6T9F6|F6T9F6_CIOIN Uncharacterized protein OS=Ciona 0.3 12.0 9.2 8.3 7.4 0.2 5.2 2 tr|H2XWF9|H2XWF9_CIOIN Uncharacterized protein OS=Ciona 0.32 11.8 2.3 1.3 9.9 0.1 2.8 1 tr|H2XPL4|H2XPL4_CIOIN Uncharacterized protein OS=Ciona 0.62 10.9 8.8 93 4.1 0.2 5.7 3 tr|F6X5V4|F6X5V4_CIOIN Uncharacterized protein OS=Ciona 1.3 9.9 18.9 4.5 8.2 0.1 6.2 4 tr|F7ALA2|F7ALA2_CIOIN Uncharacterized protein OS=Ciona 1.6 9.6 4.1 4.3 8.3 0.2 3.5 1 tr|F7APX0|F7APX0_CIOIN Uncharacterized protein OS=Ciona 2.6 9.0 7.9 1.5 9.7 1.0 4.1 1 tr|F6S7F2|F6S7F2_CIOIN Mediator of RNA polymerase II tr 2.6 9.0 5.8 23 5.9 0.3 3.9 1 tr|H2XRV2|H2XRV2_CIOIN Uncharacterized protein OS=Ciona Domain annotation for each sequence (and alignments): >> tr|F6WTM4|F6WTM4_CIOIN dynein assembly factor with WDR repeat domains 1-like OS=Ciona intestinalis OX=7719 GN=LOC100 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.5 0.0 8.9e-08 7.5e-06 5 38 .] 86 120 .. 83 120 .. 0.93 2 ! 28.8 0.0 1.6e-08 1.4e-06 2 38 .] 125 163 .. 124 163 .. 0.93 3 ! 32.2 0.0 1.4e-09 1.2e-07 1 38 [] 167 205 .. 167 205 .. 0.95 4 ! 27.4 0.1 4.5e-08 3.8e-06 1 38 [] 209 247 .. 209 247 .. 0.91 5 ! 19.1 0.0 1.9e-05 0.0016 2 38 .] 252 289 .. 251 289 .. 0.90 6 ! 24.6 0.1 3.5e-07 3e-05 1 37 [. 293 330 .. 293 331 .. 0.91 7 ! 35.9 0.0 9.4e-11 7.9e-09 2 38 .] 336 373 .. 335 373 .. 0.96 8 ! 33.6 0.1 5e-10 4.2e-08 1 37 [. 377 414 .. 377 415 .] 0.92 Alignments for each domain: == domain 1 score: 26.5 bits; conditional E-value: 8.9e-08 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++l++H + t +af+++g+ +++Gs+D+t++iWd tr|F6WTM4|F6WTM4_CIOIN 86 KVLRAHiLPLTNIAFNKSGSCFITGSYDRTCKIWD 120 7899**8889************************9 PP == domain 2 score: 28.8 bits; conditional E-value: 1.6e-08 EEEEEEESS.SSEEEEE.EETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtsla.fspdgawlasGsdDgtvriWd 38 + l+tl+GH + v+++a ++p+g+ +a+Gs D+t+++W+ tr|F6WTM4|F6WTM4_CIOIN 125 DELQTLEGHrNVVYAIAfNNPYGDKIATGSFDKTCKLWN 163 6799*****7769*************************8 PP == domain 3 score: 32.2 bits; conditional E-value: 1.4e-09 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 gqc t++GH + +l+f+p ++ +a+Gs+D t ++Wd tr|F6WTM4|F6WTM4_CIOIN 167 GQCYFTYRGHtAEIVCLSFNPQSTIVATGSMDATSKLWD 205 7999******76699***********************9 PP == domain 4 score: 27.4 bits; conditional E-value: 4.5e-08 TEEEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 1 gqclrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 g+ l tl+GHs+ + slaf++ g+ +++Gs D+tv +Wd tr|F6WTM4|F6WTM4_CIOIN 209 GNELATLSGHSGeIISLAFNSRGDQMLTGSFDHTVVLWD 247 57899*****55688***********************9 PP == domain 5 score: 19.1 bits; conditional E-value: 1.9e-05 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 q++ tl GH + ++ +f+ d +++a++s+D++ ++Wd tr|F6WTM4|F6WTM4_CIOIN 252 QQTNTLIGHrGEISTAQFNYDCSLIATASMDKSSKLWD 289 5678999**888*8777********************9 PP == domain 6 score: 24.6 bits; conditional E-value: 3.5e-07 TEEEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEE CS WD40 1 gqclrtltGHss.vtslafspdgawlasGsdDgtvriW 37 gqc++tl+GHs+ v ++ f++ g+ ++sGs Dgt r + tr|F6WTM4|F6WTM4_CIOIN 293 GQCIGTLRGHSDeVFDIGFNSTGQQIVSGSADGTARTY 330 79********556*********************9866 PP == domain 7 score: 35.9 bits; conditional E-value: 9.4e-11 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +cl++++GH + v+ ++f+p g+ +++Gs D+t r+Wd tr|F6WTM4|F6WTM4_CIOIN 336 KCLHVFEGHeGEVSKVCFNPQGRRILTGSTDKTARLWD 373 8********888*************************9 PP == domain 8 score: 33.6 bits; conditional E-value: 5e-10 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 g+cl++++GH + + s+ f+ +g+ +++Gs+D+t+riW tr|F6WTM4|F6WTM4_CIOIN 377 GECLQVFEGHtDEIFSCVFNYEGDTILTGSKDNTCRIW 414 69********666*8888******************** PP >> tr|F6ZM65|F6ZM65_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.2 0.0 2.5e-08 2.1e-06 5 38 .] 12 46 .. 9 46 .. 0.94 2 ! 32.8 0.0 8.8e-10 7.5e-08 5 37 .. 52 87 .. 49 87 .. 0.86 3 ! 26.7 0.2 7.5e-08 6.3e-06 5 38 .] 96 130 .. 93 130 .. 0.91 4 ! 39.3 0.1 7.9e-12 6.7e-10 3 38 .] 136 172 .. 134 172 .. 0.95 5 ! 32.6 0.4 1.1e-09 9.1e-08 2 38 .] 177 214 .. 176 214 .. 0.93 6 ! 27.7 0.1 3.7e-08 3.2e-06 2 36 .. 219 254 .. 218 256 .. 0.93 7 ! 22.0 0.0 2.3e-06 0.00019 2 38 .] 261 298 .. 260 298 .. 0.91 Alignments for each domain: == domain 1 score: 28.2 bits; conditional E-value: 2.5e-08 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 r ++GH + +ts++f+p+ + la+Gs+D +++W+ tr|F6ZM65|F6ZM65_CIOIN 12 RQFKGHrDTITSCDFNPNMKQLATGSMDSCLMVWN 46 789***888*************************8 PP == domain 2 score: 32.8 bits; conditional E-value: 8.8e-10 EEEE..SSSS.EEEEEEETTSSEEEEEETTSEEEEE CS WD40 5 rtlt..GHss.vtslafspdgawlasGsdDgtvriW 37 r+++ GH++ + s++fsp+g+++as+s+D+tvr+W tr|F6ZM65|F6ZM65_CIOIN 52 RSYRfvGHKDaILSVQFSPSGHLVASASRDKTVRLW 87 565555**555************************* PP == domain 3 score: 26.7 bits; conditional E-value: 7.5e-08 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +++++H v+s+ fs+dg l+++ dD+t+++W+ tr|F6ZM65|F6ZM65_CIOIN 96 TVFKAHtATVRSVNFSSDGLHLLTAADDKTIKVWS 130 5799**777****************99*******5 PP == domain 4 score: 39.3 bits; conditional E-value: 7.9e-12 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 + +lt H ++v++ +fspd+++++sGsdD+tv++Wd tr|F6ZM65|F6ZM65_CIOIN 136 FQFSLTQHmNWVRCARFSPDNRLIVSGSDDKTVKLWD 172 57899*******************************9 PP == domain 5 score: 32.6 bits; conditional E-value: 1.1e-09 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +c++t+ H ++v+++ f+p+g+ +a+++ D tv++Wd tr|F6ZM65|F6ZM65_CIOIN 177 ECVHTYFQHgGFVNHVEFHPSGTCIAAAGTDSTVKVWD 214 7********777*************98777*******9 PP == domain 6 score: 27.7 bits; conditional E-value: 3.7e-08 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvri 36 ++l+++ H ++v+ l+f+p+g++l+++s D+t++i tr|F6ZM65|F6ZM65_CIOIN 219 KLLQHYQVHsGPVNQLSFHPSGNFLITSSNDCTLKI 254 6899*****777***********************8 PP == domain 7 score: 22.0 bits; conditional E-value: 2.3e-06 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++ tl GH +vt+ fs++g ++asG+ D v +W+ tr|F6ZM65|F6ZM65_CIOIN 261 RLFFTLHGHqEPVTATTFSRNGEYFASGGADEQVIVWK 298 5678999**888*************************6 PP >> tr|F7AMH0|F7AMH0_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 GN=LOC100176561 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 36.2 0.1 7.6e-11 6.4e-09 2 38 .] 111 148 .. 110 148 .. 0.94 2 ! 28.1 1.0 2.7e-08 2.3e-06 5 38 .] 156 190 .. 152 190 .. 0.90 3 ! 26.2 1.0 1.1e-07 9.4e-06 4 38 .] 198 238 .. 195 238 .. 0.79 4 ! 24.1 0.7 5e-07 4.2e-05 2 37 .. 243 278 .. 242 279 .. 0.85 5 ? 9.4 0.2 0.022 1.8 5 38 .] 287 363 .. 283 363 .. 0.56 6 ! 31.6 0.0 2.2e-09 1.8e-07 3 38 .] 370 406 .. 368 406 .. 0.90 7 ! 34.7 0.4 2.3e-10 2e-08 3 38 .] 412 448 .. 410 448 .. 0.93 8 ! 30.3 0.0 5.4e-09 4.6e-07 3 37 .. 454 489 .. 452 490 .. 0.90 Alignments for each domain: == domain 1 score: 36.2 bits; conditional E-value: 7.6e-11 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +c+ +++GH v s++fsp+g +lasGs D tvr+Wd tr|F7AMH0|F7AMH0_CIOIN 111 RCTSSIEGHaEAVLSVKFSPNGGYLASGSGDTTVRFWD 148 69999****777****************99*******9 PP == domain 2 score: 28.1 bits; conditional E-value: 2.7e-08 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +t++ H +v ++ +spdg+ lasG+++g v +Wd tr|F7AMH0|F7AMH0_CIOIN 156 YTCKSHrHWVLCIEWSPDGRTLASGCKNGQVCLWD 190 678899777*************************9 PP == domain 3 score: 26.2 bits; conditional E-value: 1.1e-07 EEEEESS.SSEEEEEEETTSSE...........EEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgaw...........lasGsdDgtvriWd 38 +tltGH +++t+l+ w las+s+D t+riWd tr|F7AMH0|F7AMH0_CIOIN 198 GKTLTGHkQWITHLC------WaplhldgtcrkLASSSKDTTIRIWD 238 689****888****6......444444455588*************9 PP == domain 4 score: 24.1 bits; conditional E-value: 5e-07 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 qc +l+ H +svt++++s + + s+s D+t+++W tr|F7AMH0|F7AMH0_CIOIN 243 QCSIILSSHlQSVTCIRWSGEDL-IYSASQDRTIKVW 278 8999************6666644.589********** PP == domain 5 score: 9.4 bits; conditional E-value: 0.022 EEEESSSS.EEEEE...........EETTSSE...............................EEEEETTSEEEEEE CS WD40 5 rtltGHss.vtsla...........fspdgaw...............................lasGsdDgtvriWd 38 rtl GH++ v+ la f p+ a ++sGsdD t+ +W+ tr|F7AMH0|F7AMH0_CIOIN 287 RTLQGHGHwVNVLAlstdyvmrtgaFEPSTATvvakensnsaaqlqkealkrynivkgntgerMVSGSDDFTLFLWN 363 677777444443333377766666655555554444444444444555555555555555555667**********8 PP == domain 6 score: 31.6 bits; conditional E-value: 2.2e-09 EEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 ++ tGH+ v++++fspd +++as+s D+++++W+ tr|F7AMH0|F7AMH0_CIOIN 370 PIARMTGHQAlVNDVKFSPDARLIASASFDKSIKLWN 406 667789**667****************99*******8 PP == domain 7 score: 34.7 bits; conditional E-value: 2.3e-10 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 + +l+GH +sv+ la+s d+++l+sGs D t+++Wd tr|F7AMH0|F7AMH0_CIOIN 412 FIVSLRGHvNSVYQLAWSADSRLLVSGSGDSTLKVWD 448 56789**********************99*******9 PP == domain 8 score: 30.3 bits; conditional E-value: 5.4e-09 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 +l l GH + v+++++s dg+ +asG++D+ ++iW tr|F7AMH0|F7AMH0_CIOIN 454 LLLDLPGHaDEVYAVDWSTDGQRVASGGKDRVLKIW 489 667799**777************************* PP >> tr|F6SZ54|F6SZ54_CIOIN WD repeat-containing protein 5 OS=Ciona intestinalis OX=7719 GN=LOC100176938 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 36.7 0.0 5.4e-11 4.6e-09 6 37 .. 66 98 .. 59 98 .. 0.90 2 ! 32.8 1.0 9.3e-10 7.9e-08 3 38 .] 105 141 .. 103 141 .. 0.91 3 ! 39.7 0.2 6.2e-12 5.2e-10 1 38 [] 145 183 .. 145 183 .. 0.96 4 ! 37.8 0.3 2.3e-11 2e-09 1 38 [] 187 225 .. 187 225 .. 0.95 5 ! 25.0 0.0 2.5e-07 2.2e-05 1 38 [] 229 268 .. 229 268 .. 0.92 6 ! 21.9 0.1 2.5e-06 0.00021 1 38 [] 272 313 .. 272 313 .. 0.78 7 ! 19.7 0.0 1.3e-05 0.0011 3 38 .] 319 357 .. 317 357 .. 0.85 Alignments for each domain: == domain 1 score: 36.7 bits; conditional E-value: 5.4e-11 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 6 tltGH.ssvtslafspdgawlasGsdDgtvriW 37 t GH + v+s++fspdg+wlas+s D+ ++iW tr|F6SZ54|F6SZ54_CIOIN 66 TMAGHtKAVSSVKFSPDGQWLASSSADKLIKIW 98 445**999************************* PP == domain 2 score: 32.8 bits; conditional E-value: 9.3e-10 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +t++GH +++++a+s d+++l+s+sdD+t++iWd tr|F6SZ54|F6SZ54_CIOIN 105 YEKTISGHkLGISDIAWSTDSHLLCSASDDKTLKIWD 141 568999**766*************************9 PP == domain 3 score: 39.7 bits; conditional E-value: 6.2e-12 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 g+cl+tl+GH + v ++ f+p +++++sGs D +vriWd tr|F6SZ54|F6SZ54_CIOIN 145 GKCLKTLKGHsNYVFCCNFNPQSNLIVSGSFDESVRIWD 183 79********777*************************9 PP == domain 4 score: 37.8 bits; conditional E-value: 2.3e-11 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 g+cl+tl +H ++v+s+ f++dga+++s+s+Dg +riWd tr|F6SZ54|F6SZ54_CIOIN 187 GKCLKTLPAHsDPVSSVHFNRDGALIVSSSYDGLCRIWD 225 79********666*************************9 PP == domain 5 score: 25.0 bits; conditional E-value: 2.5e-07 TEEEEEEESS.SS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 1 gqclrtltGH.ss.vtslafspdgawlasGsdDgtvriWd 38 gqcl+tl ++ v+ ++fsp+g+++++++ D+t+++Wd tr|F6SZ54|F6SZ54_CIOIN 229 GQCLKTLIDDdNPpVSFVKFSPNGKYILAATLDNTLKLWD 268 7999**99776678**************9999*******9 PP == domain 6 score: 21.9 bits; conditional E-value: 2.5e-06 TEEEEEEESS.SS...EEEEE...EETTSSEEEEEETTSEEEEEE CS WD40 1 gqclrtltGH.ss...vtsla...fspdgawlasGsdDgtvriWd 38 g+cl+t+tG+ + + g+w++sGs+D+ ++iW+ tr|F6SZ54|F6SZ54_CIOIN 272 GKCLKTYTGQsNEkycI---FanfSVTGGKWIVSGSEDHMIYIWN 313 79********6556663...333345666***************8 PP == domain 7 score: 19.7 bits; conditional E-value: 1.3e-05 EEEEEESSSS.EEEEEEETTSSEEEEEE..TTSEEEEEE CS WD40 3 clrtltGHss.vtslafspdgawlasGs..dDgtvriWd 38 +++l+GH++ v + a +p + +asG D+++++W+ tr|F6SZ54|F6SZ54_CIOIN 319 IVQKLSGHTDvVLCSACHPTENIIASGAleNDRSIKLWK 357 57899***88569999**********96445*******6 PP >> tr|F6WWW4|F6WWW4_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 12.0 0.0 0.0033 0.28 9 32 .. 63 88 .. 58 94 .. 0.76 2 ! 30.0 0.2 6.8e-09 5.7e-07 2 38 .] 100 138 .. 99 138 .. 0.92 3 ! 28.3 0.1 2.3e-08 2e-06 3 38 .] 144 180 .. 142 180 .. 0.92 4 ! 21.1 0.6 4.3e-06 0.00037 2 38 .] 185 221 .. 184 221 .. 0.88 5 ? 3.8 0.0 1.3 1.1e+02 25 37 .. 267 278 .. 253 279 .. 0.82 6 ! 17.7 0.6 5.4e-05 0.0045 6 37 .. 376 408 .. 372 409 .. 0.89 7 ! 18.5 0.3 3e-05 0.0026 3 37 .. 419 455 .. 417 456 .. 0.76 8 ! 21.5 0.0 3.4e-06 0.00029 5 38 .] 467 501 .. 463 501 .. 0.90 9 ! 33.1 0.3 7.3e-10 6.2e-08 2 38 .] 506 543 .. 505 543 .. 0.91 10 ! 19.6 0.1 1.3e-05 0.0011 2 37 .. 548 584 .. 547 585 .. 0.88 11 ! 12.1 0.1 0.0031 0.26 2 38 .] 590 627 .. 589 627 .. 0.90 Alignments for each domain: == domain 1 score: 12.0 bits; conditional E-value: 0.0033 SS..SSEEEEEEETTSSEEEEEETTS CS WD40 9 GH..ssvtslafspdgawlasGsdDg 32 H ++vt+la+spd ++++++++ tr|F6WWW4|F6WWW4_CIOIN 63 SHdgDDVTCLAVSPDDSMIVTSTKSL 88 486445**************987555 PP == domain 2 score: 30.0 bits; conditional E-value: 6.8e-09 EEEEEEE.SS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtlt.GH.ssvtslafspdgawlasGsdDgtvriWd 38 +c+rt++ H ++v s++f+p +++la+G+ Dgt+++Wd tr|F6WWW4|F6WWW4_CIOIN 100 KCVRTWRaIHmFPVVSMDFDPTSTLLATGGSDGTIKVWD 138 688998878999999**************88*******9 PP == domain 3 score: 28.3 bits; conditional E-value: 2.3e-08 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 c++ ++G + v+++af+p++ l s+ dD ++r+Wd tr|F6WWW4|F6WWW4_CIOIN 144 CTHNFRGSpGIVNCVAFHPNNLTLYSAADDYNIRVWD 180 89999*995559***************99*******9 PP == domain 4 score: 21.1 bits; conditional E-value: 4.3e-06 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +++++l H ssvt+l+fs +++ +++D+ v +W+ tr|F6WWW4|F6WWW4_CIOIN 185 KLVKVLNSHvSSVTCLKFSNVDCLVS-AGRDNVVCLWN 221 678999**********9999999986.556*******8 PP == domain 5 score: 3.8 bits; conditional E-value: 1.3 EEEEETTSEEEEE CS WD40 25 lasGsdDgtvriW 37 +++Gs +g +r+W tr|F6WWW4|F6WWW4_CIOIN 267 ITAGS-KGQLRVW 278 45788.******* PP == domain 6 score: 17.7 bits; conditional E-value: 5.4e-05 EEESSSS.EEEEEEETTSSEEEEEETTSEEEEE CS WD40 6 tltGHss.vtslafspdgawlasGsdDgtvriW 37 +l+ Hs+ v ++++ ++ + ++s+s+D+tv +W tr|F6WWW4|F6WWW4_CIOIN 376 VLKKHSDtVLCVDVFKNRTHFVSSSKDNTVCLW 408 6888*556************************* PP == domain 7 score: 18.5 bits; conditional E-value: 3e-05 EEEEEESSSS....EEEEEEETTSSEEEEEETTSEEEEE CS WD40 3 clrtltGHss....vtslafspdgawlasGsdDgtvriW 37 cl + GH++ vt++ + +l+sGs D+t++iW tr|F6WWW4|F6WWW4_CIOIN 419 CLVVGAGHTHdvgaVTCC--NNKMEFLVSGSQDQTLKIW 455 566666884457789***..4445559************ PP == domain 8 score: 21.5 bits; conditional E-value: 3.4e-06 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +t +H ++++s+ +sp+ +++asGs D+ ++W+ tr|F6WWW4|F6WWW4_CIOIN 467 HTVMAHsKNINSIVVSPNDKLIASGSQDKLAKLWK 501 66679*888*************************6 PP == domain 9 score: 33.1 bits; conditional E-value: 7.3e-10 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 + ++t++GH ++++++fsp + la++s Dg++++W+ tr|F6WWW4|F6WWW4_CIOIN 506 SVVGTFKGHkRGIWCVQFSPMDQVLATSSADGSIKLWS 543 6789*****655*************************5 PP == domain 10 score: 19.6 bits; conditional E-value: 1.3e-05 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 +cl+tl+GH +sv + f g+ ++s++ Dg +++W tr|F6WWW4|F6WWW4_CIOIN 548 TCLKTLEGHdCSVLKVIFIAKGTQMVSCGSDGLLKLW 584 79*******888****99999999887766******* PP == domain 11 score: 12.1 bits; conditional E-value: 0.0031 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +c++t ++H ++l+ + + ++++sG+ D + +W+ tr|F6WWW4|F6WWW4_CIOIN 590 ECIQTVEAHdEKAWALCSDVEDTMIISGGADSIISFWK 627 799******54489***********************6 PP >> tr|H2XLI2|H2XLI2_CIOIN Lissencephaly-1 homolog OS=Ciona intestinalis OX=7719 GN=LOC100180225 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.5 0.0 3.8e-07 3.2e-05 7 38 .] 105 137 .. 101 137 .. 0.95 2 ! 32.5 0.1 1.1e-09 9.4e-08 4 38 .] 144 179 .. 141 179 .. 0.92 3 ! 38.4 0.2 1.5e-11 1.3e-09 2 37 .. 184 220 .. 183 221 .. 0.93 4 ! 24.7 0.1 3.4e-07 2.9e-05 2 37 .. 226 262 .. 225 262 .. 0.94 5 ! 23.1 0.0 1e-06 8.8e-05 2 38 .] 268 325 .. 267 325 .. 0.83 6 ! 36.2 0.1 7.6e-11 6.4e-09 1 38 [] 329 367 .. 329 367 .. 0.96 7 ! 20.9 0.1 5.3e-06 0.00045 2 37 .. 372 408 .. 371 409 .. 0.91 Alignments for each domain: == domain 1 score: 24.5 bits; conditional E-value: 3.8e-07 EESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 7 ltGH.ssvtslafspdgawlasGsdDgtvriWd 38 l+GH +++t + f+p + ++s+ +D t+++Wd tr|H2XLI2|H2XLI2_CIOIN 105 LSGHrNPITRVIFHPVYSVVLSAAEDSTIKVWD 137 78******************************9 PP == domain 2 score: 32.5 bits; conditional E-value: 1.1e-09 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 rtl+GH + v +++f+p g+ las+s D +v+iWd tr|H2XLI2|H2XLI2_CIOIN 144 ERTLKGHtDAVQDISFDPTGKVLASCSADLSVKIWD 179 689****666*************************9 PP == domain 3 score: 38.4 bits; conditional E-value: 1.5e-11 EEEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEE CS WD40 2 qclrtltGHss.vtslafspdgawlasGsdDgtvriW 37 +c++tltGH++ v+s++f pdg+ ++s+s+D+t+++W tr|H2XLI2|H2XLI2_CIOIN 184 ECTKTLTGHDHnVSSVSFMPDGDHIVSASRDKTIKLW 220 79*******556************************* PP == domain 4 score: 24.7 bits; conditional E-value: 3.4e-07 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 c++t+ GH +v+ ++ + dg++las+s D+tvr+W tr|H2XLI2|H2XLI2_CIOIN 226 YCIKTFLGHkEWVRMVRPNMDGSLLASCSNDQTVRVW 262 69*******777************************* PP == domain 5 score: 23.1 bits; conditional E-value: 1e-06 EEEEEEESSSS.EEEEEEETTSSE....................EEEEETTSEEEEEE CS WD40 2 qclrtltGHss.vtslafspdgaw....................lasGsdDgtvriWd 38 +c +l+ H++ v +l++ p++a ++sGs+D+t++iWd tr|H2XLI2|H2XLI2_CIOIN 268 ECKMELREHDHvVECLSWAPESAAanicaaagievrkgekvgpfIVSGSRDKTLKIWD 325 6889999**8866***977777778888888888888888888799***********9 PP == domain 6 score: 36.2 bits; conditional E-value: 7.6e-11 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 gqcl tl GH s++++ f+p g++l+++sdD+t+r+Wd tr|H2XLI2|H2XLI2_CIOIN 329 GQCLFTLIGHdSWIRAAMFHPRGKFLITASDDKTLRVWD 367 79********888*9999********************9 PP == domain 7 score: 20.9 bits; conditional E-value: 5.3e-06 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 +c +tl +H +vt+l+++++ +++++Gs D v++W tr|H2XLI2|H2XLI2_CIOIN 372 RCHKTLAAHeHFVTDLDVHKSAPYIITGSVDLLVKVW 408 57889999*656************************* PP >> tr|F7AWC6|F7AWC6_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 31.3 0.1 2.6e-09 2.2e-07 5 38 .] 11 45 .. 7 45 .. 0.88 2 ! 32.1 1.3 1.5e-09 1.3e-07 2 37 .. 50 86 .. 49 87 .. 0.95 3 ! 40.2 0.7 4.2e-12 3.6e-10 2 38 .] 92 129 .. 91 129 .. 0.97 4 ! 47.9 0.1 1.5e-14 1.3e-12 1 38 [] 133 171 .. 133 171 .. 0.98 5 ! 32.7 0.1 9.4e-10 8e-08 5 38 .] 179 213 .. 175 213 .. 0.92 Alignments for each domain: == domain 1 score: 31.3 bits; conditional E-value: 2.6e-09 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 + l GH + v+sl+fsp ++l+s+s+Dg+vr+W+ tr|F7AWC6|F7AWC6_CIOIN 11 KPLYGHsGTVYSLSFSPCRTLLISSSEDGSVRLWS 45 5688**555*************************5 PP == domain 2 score: 32.1 bits; conditional E-value: 1.5e-09 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 ++l +++GH +v++++fsp+g+++as++ D+ riW tr|F7AWC6|F7AWC6_CIOIN 50 TNLMVYKGHiWPVWGVKFSPHGHYFASCGQDRVARIW 86 6899*****999************************* PP == domain 3 score: 40.2 bits; conditional E-value: 4.2e-12 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 q+lr++ GH s+v ++a++++++++a+Gs D++vr+Wd tr|F7AWC6|F7AWC6_CIOIN 92 QPLRIFAGHlSDVDCVAYHHNSNYIATGSSDRSVRVWD 129 79**************************99*******9 PP == domain 4 score: 47.9 bits; conditional E-value: 1.5e-14 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 g+c+r++tGH ++v +la+spdg++lasG+ D+ v +Wd tr|F7AWC6|F7AWC6_CIOIN 133 GNCVRVFTGHkKPVMCLAWSPDGRYLASGGQDNMVLVWD 171 79********999*************************9 PP == domain 5 score: 32.7 bits; conditional E-value: 9.4e-10 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 + ++GH v+ lafs+dg lasG+ D+ v+iWd tr|F7AWC6|F7AWC6_CIOIN 179 GQFKGHtATVHTLAFSRDGEVLASGGLDNCVKIWD 213 679***777*************************9 PP >> tr|F6QXC2|F6QXC2_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.7 0.2 3.2e-07 2.7e-05 4 38 .] 176 211 .. 173 211 .. 0.89 2 ! 23.1 0.1 1e-06 8.7e-05 10 37 .. 246 273 .. 232 273 .. 0.88 3 ! 19.6 0.0 1.4e-05 0.0012 5 38 .] 284 318 .. 280 318 .. 0.89 4 ? 4.1 0.0 1 88 7 36 .. 328 357 .. 322 357 .. 0.75 5 ! 39.3 0.2 8.2e-12 7e-10 2 38 .] 364 401 .. 363 401 .. 0.94 6 ! 19.8 0.0 1.2e-05 0.00098 3 37 .. 407 451 .. 405 452 .. 0.80 7 ! 39.5 0.3 7.1e-12 6e-10 1 38 [] 456 494 .. 456 494 .. 0.94 8 ! 14.1 0.3 0.00075 0.063 1 36 [. 498 533 .. 498 535 .. 0.91 Alignments for each domain: == domain 1 score: 24.7 bits; conditional E-value: 3.2e-07 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++l+GH s v +a++p +++lasGs D t riW+ tr|F6QXC2|F6QXC2_CIOIN 176 STVLRGHdSEVFICAWNPVQDLLASGSGDSTARIWN 211 6789***77798889***********99*******8 PP == domain 2 score: 23.1 bits; conditional E-value: 1e-06 SSSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 10 HssvtslafspdgawlasGsdDgtvriW 37 ++vtsl+++ dg++la+Gs+Dg r+W tr|F6QXC2|F6QXC2_CIOIN 246 NKDVTSLDWNCDGTLLATGSYDGYARLW 273 467************************* PP == domain 3 score: 19.6 bits; conditional E-value: 1.4e-05 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +l H +++ +l++++ g++++s++ D+t iWd tr|F6QXC2|F6QXC2_CIOIN 284 NVLGQHkGPIFALKWNKKGNYILSAGVDKTTIIWD 318 567889777**************9999*******9 PP == domain 4 score: 4.1 bits; conditional E-value: 1 EESS.SSEEEEEEETTSSEEEEEETTSEEEE CS WD40 7 ltGH.ssvtslafspdgawlasGsdDgtvri 36 + H + +++++ + + as+s D ++++ tr|F6QXC2|F6QXC2_CIOIN 328 FPFHqAPALDVDWQNNTCF-ASCSTDMSIHV 357 5566555568989999999.78988*99986 PP == domain 5 score: 39.3 bits; conditional E-value: 8.2e-12 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++++t++GH + v++++++p+g++las+sdD t+++W+ tr|F6QXC2|F6QXC2_CIOIN 364 RPVKTFDGHsNEVNAIKWDPSGTLLASCSDDMTLKVWS 401 5899*****888*************************5 PP == domain 6 score: 19.8 bits; conditional E-value: 1.2e-05 EEEEEESS.SSEEEEEEETTSSE.........EEEEETTSEEEEE CS WD40 3 clrtltGH.ssvtslafspdgaw.........lasGsdDgtvriW 37 ++ l++H + ++ +++sp g+ las+s D tvr+W tr|F6QXC2|F6QXC2_CIOIN 407 FVHDLRAHsKEIYTIKWSPAGPGsnnpnqnlmLASASFDSTVRLW 451 5899****888*****6666666666666667789999******* PP == domain 7 score: 39.5 bits; conditional E-value: 7.1e-12 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 g cl+tlt H +v+s+afspdg++lasGs D+ v+iW+ tr|F6QXC2|F6QXC2_CIOIN 456 GACLHTLTKHhEPVYSVAFSPDGRLLASGSFDKCVHIWS 494 57******99899*************************5 PP == domain 8 score: 14.1 bits; conditional E-value: 0.00075 TEEEEEEESSSSEEEEEEETTSSEE.EEEETTSEEEE CS WD40 1 gqclrtltGHssvtslafspdgawl.asGsdDgtvri 36 g+++++++G +++ ++++++g+ + as+s Dgtv + tr|F6QXC2|F6QXC2_CIOIN 498 GRLVHSYEGTGGIFEVCWNSSGNKVgASAS-DGTVCV 533 5789******99************988899.****87 PP >> tr|F6WWK0|F6WWK0_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.6 0.3 3.5e-07 3e-05 8 38 .] 214 245 .. 205 245 .. 0.84 2 ! 21.3 0.0 4e-06 0.00034 2 38 .] 250 295 .. 249 295 .. 0.92 3 ! 21.0 0.0 4.9e-06 0.00042 6 38 .] 304 337 .. 300 337 .. 0.87 4 ! 15.6 0.3 0.00025 0.021 4 38 .] 344 379 .. 341 379 .. 0.90 5 ! 33.7 0.0 4.7e-10 4e-08 1 38 [] 383 421 .. 383 421 .. 0.96 6 ! 20.8 0.1 5.7e-06 0.00048 2 37 .. 426 463 .. 425 463 .. 0.92 7 ! 30.9 0.0 3.5e-09 2.9e-07 3 37 .. 470 505 .. 468 505 .. 0.94 Alignments for each domain: == domain 1 score: 24.6 bits; conditional E-value: 3.5e-07 ESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 8 tGH.ssvtslafspdgawlasGsdDgtvriWd 38 GH +++ + fspd+++l+++s+Dg +++W+ tr|F6WWK0|F6WWK0_CIOIN 214 IGHsRPISFCEFSPDSKMLVTSSWDGLCKLWS 245 39*555*8888********************5 PP == domain 2 score: 21.3 bits; conditional E-value: 4e-06 EEEEEEESS.SSEEEEEEETTSSE........EEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgaw........lasGsdDgtvriWd 38 + +rtl+GH s+v ++ f+p + las+s g v++W+ tr|F6WWK0|F6WWK0_CIOIN 250 EEIRTLRGHqSNVGCITFHPFATTqldnsaacLASCSTGGEVKLWN 295 5789*****888*****9999999999999999***99*******8 PP == domain 3 score: 21.0 bits; conditional E-value: 4.9e-06 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 6 tltGH.ssvtslafspdgawlasGsdDgtvriWd 38 l GH v +a++p+g++la+ ++D++ r+Wd tr|F6WWK0|F6WWK0_CIOIN 304 DLNGHeMRVARVAYHPSGRFLATTCYDKSWRLWD 337 68899666**************8888*******9 PP == domain 4 score: 15.6 bits; conditional E-value: 0.00025 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 + + +GH ++v++++f+ dg++ ++G+ D r+Wd tr|F6WWK0|F6WWK0_CIOIN 344 VLHQEGHsKGVHDISFQIDGSLCVTGGLDAYGRVWD 379 55668**999************************98 PP == domain 5 score: 33.7 bits; conditional E-value: 4.7e-10 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 g+c++ ++GH + ++++fsp+g +a+Gs D+tv+iWd tr|F6WWK0|F6WWK0_CIOIN 383 GRCIYFIEGHlKEMYAVCFSPNGYQIATGSADNTVKIWD 421 6899999*******************************9 PP == domain 6 score: 20.8 bits; conditional E-value: 5.7e-06 EEEEEEESS.SSEEEEE.EETTSSEEEEEETTSEEEEE CS WD40 2 qclrtltGH.ssvtsla.fspdgawlasGsdDgtvriW 37 +c++t+ +H + v+ l+ +dg++l++Gs+Dgt +iW tr|F6WWK0|F6WWK0_CIOIN 426 SCVYTIPAHtNLVSRLQyQKSDGNYLVTGSYDGTAKIW 463 699999***5559999999******************* PP == domain 7 score: 30.9 bits; conditional E-value: 3.5e-09 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 +l+tl GH + v +++ spdg ++a++s D+t ++W tr|F6WWK0|F6WWK0_CIOIN 470 PLKTLAGHeGKVMCVDGSPDGEFIATSSFDRTFKLW 505 799*****777****************99******* PP >> tr|F6VEB2|F6VEB2_CIOIN Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog OS=Ciona intestinalis O # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 33.3 0.8 6.2e-10 5.2e-08 2 37 .. 6 42 .. 5 42 .. 0.93 2 ! 20.6 1.1 6.4e-06 0.00054 3 38 .] 51 88 .. 49 88 .. 0.85 3 ! 31.8 0.0 1.9e-09 1.6e-07 5 38 .] 98 132 .. 94 132 .. 0.94 4 ! 22.4 0.0 1.8e-06 0.00015 2 37 .. 141 177 .. 140 178 .. 0.93 5 ! 36.7 3.6 5.2e-11 4.4e-09 5 37 .. 188 221 .. 184 222 .. 0.92 6 ! 17.8 0.6 4.9e-05 0.0042 1 37 [. 241 279 .. 241 280 .. 0.88 7 ! 21.3 0.3 3.9e-06 0.00033 8 38 .] 300 332 .. 292 332 .. 0.85 Alignments for each domain: == domain 1 score: 33.3 bits; conditional E-value: 6.2e-10 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 +c+ +l H + v++++++p g++la+++ D+t+riW tr|F6VEB2|F6VEB2_CIOIN 6 DCVASLNDHgDRVWDVKWNPKGTLLATCGTDKTIRIW 42 6999*****555**************9999******* PP == domain 2 score: 20.6 bits; conditional E-value: 6.4e-06 EEEEEE.SS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtlt.GH.ssvtslafspdgawlasGsdDgtvriWd 38 c +l GH ++ + +sp g+ las+s D t+ iWd tr|F6VEB2|F6VEB2_CIOIN 51 CKSILQdGHqRTIRKVGWSPCGNKLASASFDATICIWD 88 5666644**555****************99*******9 PP == domain 3 score: 31.8 bits; conditional E-value: 1.9e-09 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 tl+GH + v ++a+s++g +la++s+D++v iW+ tr|F6VEB2|F6VEB2_CIOIN 98 ATLEGHeNEVKAVAWSQSGEYLATCSRDKSVWIWS 132 589***999*************************5 PP == domain 4 score: 22.4 bits; conditional E-value: 1.8e-06 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 +c ++lt H ++v ++a++p + +as+s+D t++++ tr|F6VEB2|F6VEB2_CIOIN 141 ECAGVLTVHtQDVKDIAWHPFEPIVASASYDDTIKLF 177 78899****999***********************97 PP == domain 5 score: 36.7 bits; conditional E-value: 5.2e-11 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvriW 37 tl+GH s v+s+++s+dg+ l+sGsdD+t+++W tr|F6VEB2|F6VEB2_CIOIN 188 ATLSGHsSTVWSVSWSKDGRRLVSGSDDKTIKVW 221 689***666************************* PP == domain 6 score: 17.8 bits; conditional E-value: 4.9e-05 TEEEEEEESS..SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 1 gqclrtltGH..ssvtslafspdgawlasGsdDgtvriW 37 ++c+ tl+G ++++++ +++ +++a++s D+++ ++ tr|F6VEB2|F6VEB2_CIOIN 241 WKCVCTLSGYfnQPIYCVTWCHQTDMIAACSGDNSIIVF 279 69********8555**************9988***9876 PP == domain 7 score: 21.3 bits; conditional E-value: 3.9e-06 ESS.SSEEEEEEETTSSEE.EEEETTSEEEEEE CS WD40 8 tGH.ssvtslafspdgawl.asGsdDgtvriWd 38 +H ++v++++++p + l as+sdD +++W+ tr|F6VEB2|F6VEB2_CIOIN 300 QAHdQDVNAVSWNPTTPGLlASCSDDSCIKLWK 332 589888****9999999963699*********6 PP >> tr|F6SK29|F6SK29_CIOIN guanine nucleotide-binding protein subunit beta-2-like 1 isoform X1 OS=Ciona intestinalis OX= # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 13.0 0.0 0.0016 0.14 5 38 .] 10 45 .. 6 45 .. 0.78 2 ! 24.4 1.0 4.2e-07 3.5e-05 6 38 .] 59 92 .. 54 92 .. 0.90 3 ! 32.8 0.1 9.3e-10 7.9e-08 4 38 .] 99 134 .. 96 134 .. 0.93 4 ! 25.4 0.6 2e-07 1.7e-05 3 38 .] 139 179 .. 137 179 .. 0.82 5 ! 28.7 0.2 1.8e-08 1.5e-06 6 38 .] 189 221 .. 183 221 .. 0.88 6 ! 23.7 0.1 6.8e-07 5.8e-05 2 38 .] 226 262 .. 225 262 .. 0.85 7 ! 19.8 0.0 1.1e-05 0.00097 15 37 .. 290 312 .. 279 313 .. 0.89 Alignments for each domain: == domain 1 score: 13.0 bits; conditional E-value: 0.0016 EEEESS.SSEEEEE.EETTSSEEEEEETTSEEEEEE CS WD40 5 rtltGH.ssvtsla.fspdgawlasGsdDgtvriWd 38 +tl+GH ++vt +a ++ +++s+s+D+++ +W+ tr|F6SK29|F6SK29_CIOIN 10 GTLKGHkGWVTKIAtTPAIPEMILSASRDQSLIVWK 45 799***777****654444444889**********6 PP == domain 2 score: 24.4 bits; conditional E-value: 4.2e-07 EEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 6 tltGHss.vtslafspdgawlasGsdDgtvriWd 38 l GHs+ v+++ s+dg++ +sGs+D +r+W+ tr|F6SK29|F6SK29_CIOIN 59 RLCGHSHfVSDVVISSDGQFALSGSWDFDLRLWN 92 5779*667************99***********8 PP == domain 3 score: 32.8 bits; conditional E-value: 9.3e-10 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +r + GH ++v s+afs d++ ++s+s+Dgt+++W+ tr|F6SK29|F6SK29_CIOIN 99 TRRFCGHtKDVMSVAFSGDNRQIISASRDGTIKLWN 134 67789******************************8 PP == domain 4 score: 25.4 bits; conditional E-value: 2e-07 EEEEE..ESS.SSEEEEEEETTSSE..EEEEETTSEEEEEE CS WD40 3 clrtl..tGH.ssvtslafspdgaw..lasGsdDgtvriWd 38 c +t+ + H ++v++++fsp+ + ++s+++D+ v++W+ tr|F6SK29|F6SK29_CIOIN 139 CKYTImeDSHtDWVSCVQFSPNPNTpiIVSSGWDKVVKVWN 179 5555433589777*****9999999988999*********8 PP == domain 5 score: 28.7 bits; conditional E-value: 1.8e-08 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 6 tltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++ GH +++s+ +spdg++ asG++Dg ++Wd tr|F6SK29|F6SK29_CIOIN 189 HY-GHtAFINSVTVSPDGSLCASGGKDGQAMLWD 221 34.9*777*************************9 PP == domain 6 score: 23.7 bits; conditional E-value: 6.8e-07 EEEEEEE.SSSSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtlt.GHssvtslafspdgawlasGsdDgtvriWd 38 ++l+tl+ G s +++lafsp+ wl++++ +t++iWd tr|F6SK29|F6SK29_CIOIN 226 KHLYTLSnGDSEIHALAFSPNRYWLCAAC-GPTIKIWD 262 677888634466*************9999.*******9 PP == domain 7 score: 19.8 bits; conditional E-value: 1.1e-05 EEEEETTSSEEEEEETTSEEEEE CS WD40 15 slafspdgawlasGsdDgtvriW 37 sla+spdg+ l++G D+ +r+W tr|F6SK29|F6SK29_CIOIN 290 SLAWSPDGQTLFAGYTDNLIRVW 312 788***********88******* PP >> tr|F6UG85|F6UG85_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 GN=LOC100176758 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.3 0.0 3.5e-05 0.0029 2 38 .] 52 91 .. 51 91 .. 0.89 2 ? 2.6 0.1 3.1 2.7e+02 5 33 .. 99 129 .. 95 136 .. 0.67 3 ? 5.0 0.1 0.57 48 8 37 .. 147 177 .. 140 178 .. 0.84 4 ? 10.5 0.2 0.01 0.86 9 38 .] 235 263 .. 227 263 .. 0.71 5 ! 16.6 0.0 0.00012 0.01 8 38 .] 321 353 .. 314 353 .. 0.86 6 ? 2.6 0.0 3.2 2.7e+02 10 34 .. 405 432 .. 397 436 .. 0.76 7 ? 2.5 0.1 3.3 2.8e+02 5 25 .. 445 466 .. 441 471 .. 0.76 8 ! 20.0 0.3 9.9e-06 0.00083 3 38 .] 555 592 .. 553 592 .. 0.86 9 ! 11.6 0.0 0.0044 0.37 4 37 .. 726 762 .. 723 763 .. 0.89 10 ? 10.3 0.3 0.011 0.96 4 38 .] 770 808 .. 767 808 .. 0.77 11 ? 9.4 0.1 0.023 1.9 3 38 .] 900 934 .. 898 934 .. 0.73 12 ? 8.1 0.0 0.058 4.9 8 37 .. 999 1030 .. 992 1030 .. 0.85 13 ? 3.4 0.1 1.7 1.5e+02 15 33 .. 1051 1069 .. 1042 1074 .. 0.85 14 ? 2.8 0.0 2.6 2.2e+02 4 26 .. 1124 1147 .. 1121 1172 .. 0.84 15 ! 16.6 1.8 0.00012 0.0098 5 38 .] 1236 1271 .. 1233 1271 .. 0.87 16 ? 6.7 0.1 0.16 14 7 38 .] 1424 1461 .. 1418 1461 .. 0.74 17 ? 9.9 0.1 0.015 1.3 2 37 .. 1466 1505 .. 1465 1506 .. 0.77 18 ! 15.4 0.3 0.00028 0.023 3 38 .] 1688 1725 .. 1686 1725 .. 0.84 19 ? 4.7 0.0 0.69 58 13 31 .. 1783 1801 .. 1774 1805 .. 0.83 20 ! 14.2 0.5 0.00069 0.058 5 38 .] 1931 1966 .. 1927 1966 .. 0.79 Alignments for each domain: == domain 1 score: 18.3 bits; conditional E-value: 3.5e-05 EEEEEEESS.SSEEEEEEETTSSEEEEE..ETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasG..sdDgtvriWd 38 q+++ + GH +++ sla +p+ +++a+G ++D+ + +W+ tr|F6UG85|F6UG85_CIOIN 52 QTQKFFLGHnDDIISLALHPHEQLVATGqvGKDPYICVWN 91 6778899**66688**************999********8 PP == domain 2 score: 2.6 bits; conditional E-value: 3.1 EEEE.SS.SSEEEEEEETTSSEEEEEETTSE CS WD40 5 rtlt.GH.ssvtslafspdgawlasGsdDgt 33 +l+ H +v s+ fs++g las + Dg+ tr|F6UG85|F6UG85_CIOIN 99 SILKdQHtHGVASVMFSHSGERLASVGLDGS 129 555544532699999********98665553 PP == domain 3 score: 5.0 bits; conditional E-value: 0.57 ESS.SSEEEEEEETTSSE.EEEEETTSEEEEE CS WD40 8 tGH.ssvtslafspdgaw.lasGsdDgtvriW 37 +GH + + +++++p + l++++ +++++W tr|F6UG85|F6UG85_CIOIN 147 KGHtDRIFDISWDPTSEQrLVTCG-VKHIKFW 177 7**556*********999989999.8888888 PP == domain 4 score: 10.5 bits; conditional E-value: 0.01 SS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 9 GH.ssvtslafspdgawlasGsdDgtvriWd 38 +H ++v l s dg a+Gs+Dg v++Wd tr|F6UG85|F6UG85_CIOIN 235 AHnGGVFTLHKSTDG--YATGSRDGCVKLWD 263 775558888333333..369**********9 PP == domain 5 score: 16.6 bits; conditional E-value: 0.00012 ESS..SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 8 tGH..ssvtslafspdgawlasGsdDgtvriWd 38 GH + ++l+ +p ++ a++sdD++vr+W+ tr|F6UG85|F6UG85_CIOIN 321 QGHaeGELWGLSIHPRKPIAATASDDCSVRLWS 353 4998444*************************5 PP == domain 6 score: 2.6 bits; conditional E-value: 3.2 S..SSE.EEEEEETTSSEEEEEETTSEE CS WD40 10 H..ssv.tslafspdgawlasGsdDgtv 34 H + v + +++s dg++la +s D+ v tr|F6UG85|F6UG85_CIOIN 405 HdrKEVlHEMKYSADGSYLAVASNDNFV 432 33333668899*********99989866 PP == domain 7 score: 2.5 bits; conditional E-value: 3.3 EEEESS.SSEEEEEEETTSSEE CS WD40 5 rtltGH.ssvtslafspdgawl 25 +t++ s++t++++s d+++l tr|F6UG85|F6UG85_CIOIN 445 GTCSKSsSFITHIDWSADSRYL 466 555544355**********996 PP == domain 8 score: 20.0 bits; conditional E-value: 9.9e-06 EEEEEESS.SSEEEEEEETTSSEEE.EEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawla.sGsdDgtvriWd 38 + r++ GH +vt ++ s+d++w++ +G+ D+ v W+ tr|F6UG85|F6UG85_CIOIN 555 KFRKYVGHsAHVTNVRISSDQQWMLsTGGADHAVFQWK 592 578999**777************6538999******95 PP == domain 9 score: 11.6 bits; conditional E-value: 0.0044 EEEEESS.SSEEEEEEETTSSEEEEE..ETTSEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasG..sdDgtvriW 37 ++ ++ H +++ +l +p ++ +a+G ++D+ +++W tr|F6UG85|F6UG85_CIOIN 726 QKFYDKHdDDILCLNLHPLKDIVATGqvGRDPAIHLW 762 567888*778****************9999******* PP == domain 10 score: 10.3 bits; conditional E-value: 0.011 EEEEESS..SSEEEEEEETTSSEEEE.E.ETTSEEEEEE CS WD40 4 lrtltGH..ssvtslafspdgawlas.G.sdDgtvriWd 38 l +l+G +v+s++fs dg+ l+s G + D++ iWd tr|F6UG85|F6UG85_CIOIN 770 LSILKGFhqRGVSSVDFSGDGKKLVSiGlDNDHSMAIWD 808 55666553445************98548656*******9 PP == domain 11 score: 9.4 bits; conditional E-value: 0.023 EEEEEESS.SS...EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ss...vtslafspdgawlasGsdDgtvriWd 38 ++rt ++H ++ ++l d+ ++ +G++Dg v +Wd tr|F6UG85|F6UG85_CIOIN 900 LMRTQKAHdGPcfaMHAL----DKGFV-TGGKDGVVCLWD 934 567778885445555777....66675.8**********9 PP == domain 12 score: 8.1 bits; conditional E-value: 0.058 ESS.SS.EEEEEEETTSSEEEEEETTSEEEEE CS WD40 8 tGH.ss.vtslafspdgawlasGsdDgtvriW 37 GH + ++l+f+p++ a+ s D+t+r W tr|F6UG85|F6UG85_CIOIN 999 QGHgEGeLWGLSFHPSKEECATVSNDRTLRTW 1030 6997336*************99999*****88 PP == domain 13 score: 3.4 bits; conditional E-value: 1.7 EEEEETTSSEEEEEETTSE CS WD40 15 slafspdgawlasGsdDgt 33 ++a+spdg+ +a G+ +g+ tr|F6UG85|F6UG85_CIOIN 1051 CCAYSPDGNAIAVGCNNGS 1069 999*********9997877 PP == domain 14 score: 2.8 bits; conditional E-value: 2.6 EEEEESS.SSEEEEEEETTSSEEE CS WD40 4 lrtltGH.ssvtslafspdgawla 26 +++++G s +t+++++ g++l+ tr|F6UG85|F6UG85_CIOIN 1124 VGICKGAsSYITHIDWDARGKLLC 1147 6789999555***********996 PP == domain 15 score: 16.6 bits; conditional E-value: 0.00012 EEEESS.SSEEEEEEETTSSEEEE.EETTSEEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlas.GsdDgtvriWd 38 +++ GH +vt +++s+d++ l+s G+ D ++ +W+ tr|F6UG85|F6UG85_CIOIN 1236 KKYVGHsAHVTNVRWSHDSSQLCSiGGADTSLCLWS 1271 6789**777************9755888*******5 PP == domain 16 score: 6.7 bits; conditional E-value: 0.16 EESS.SSEEEEEEETTSSE...EEEE...ETTSEEEEEE CS WD40 7 ltGH.ssvtslafspdgaw...lasG...sdDgtvriWd 38 + H +++ sl ++++ ++ +a+G s ++t+++Wd tr|F6UG85|F6UG85_CIOIN 1424 YIEHtDDIISLNVNQHPKFpniIATGqigS-NPTIHVWD 1461 668976677888777777777688877736.*******9 PP == domain 17 score: 9.9 bits; conditional E-value: 0.015 EEEEEEESS..SSEEEEEEETTSSEEEEE..ETTSEEEEE CS WD40 2 qclrtltGH..ssvtslafspdgawlasG..sdDgtvriW 37 q+l +l+G ++v+s+ fs +g++l+s ++ ++v +W tr|F6UG85|F6UG85_CIOIN 1466 QTLSILKGFhvGGVCSVNFSASGKLLLSVglDEQHSVAVW 1505 5677777544888************987515479999999 PP == domain 18 score: 15.4 bits; conditional E-value: 0.00028 EEEEEESS.SS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ss.vtslafspdgawlasGsdDgtvriWd 38 c++ GH + ++la +p + + ++ sdD+t riWd tr|F6UG85|F6UG85_CIOIN 1688 CTTLVYGHtEGeLWGLACHPTSLMCCTTSDDKTARIWD 1725 5555669*7336************99999********9 PP == domain 19 score: 4.7 bits; conditional E-value: 0.69 EEEEEEETTSSEEEEEETT CS WD40 13 vtslafspdgawlasGsdD 31 +++++fspd + la Gs tr|F6UG85|F6UG85_CIOIN 1783 IYDIRFSPDDHILAVGSSE 1801 99************99855 PP == domain 20 score: 14.2 bits; conditional E-value: 0.00069 EEEESS.SSEEEEE.EETTSSEEEEEETTSEEEEEE CS WD40 5 rtltGH.ssvtsla.fspdgawlasGsdDgtvriWd 38 r++ GH +vt + + +d++++++G+dD+ v +W+ tr|F6UG85|F6UG85_CIOIN 1931 RKYVGHsAHVTNARfVKDDSRLITTGGDDCCVFVWK 1966 6789**777**999555555556799*********6 PP >> tr|F6YGZ1|F6YGZ1_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.6 0.0 0.084 7.1 18 37 .. 272 291 .. 252 292 .. 0.81 2 ! 26.5 0.4 8.7e-08 7.4e-06 5 38 .] 341 375 .. 337 375 .. 0.91 3 ! 23.8 0.1 6.5e-07 5.5e-05 5 37 .. 383 416 .. 379 417 .. 0.89 4 ! 24.9 0.0 2.9e-07 2.4e-05 3 38 .] 423 457 .. 421 457 .. 0.93 5 ! 36.2 0.0 7.3e-11 6.2e-09 1 38 [] 461 499 .. 461 499 .. 0.97 6 ! 27.8 0.1 3.4e-08 2.9e-06 1 38 [] 503 541 .. 503 541 .. 0.92 Alignments for each domain: == domain 1 score: 7.6 bits; conditional E-value: 0.084 EETTSSEEEEEETTSEEEEE CS WD40 18 fspdgawlasGsdDgtvriW 37 s+d++ +++G d+ tv++W tr|F6YGZ1|F6YGZ1_CIOIN 272 PSQDHSIFLTGFDNSTVKLW 291 5777788899*99******* PP == domain 2 score: 26.5 bits; conditional E-value: 8.7e-08 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +l GH ++v++ +f +d+++l+++ +D tvr+Wd tr|F6YGZ1|F6YGZ1_CIOIN 341 VSLHGHsGPVYDSCFTSDNKFLITCAEDSTVRLWD 375 5789**777*************************9 PP == domain 3 score: 23.8 bits; conditional E-value: 6.5e-07 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvriW 37 ++++H +v++++ s + ++a+Gs D+t r+W tr|F6YGZ1|F6YGZ1_CIOIN 383 VIYDAHnRPVWCVDISAYDLYFATGSADHTARLW 416 5799**555************************* PP == domain 4 score: 24.9 bits; conditional E-value: 2.9e-07 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +lrt+ GH +sv ++af+ + ++la+ D+ vr+Wd tr|F6YGZ1|F6YGZ1_CIOIN 423 PLRTYAGHqDSVGAIAFHGNCSYLAT-A-DRVVRVWD 457 79******888*************86.6.*******9 PP == domain 5 score: 36.2 bits; conditional E-value: 7.3e-11 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 g+++r+ tGH +v ++afs++g++las+++D +r+Wd tr|F6YGZ1|F6YGZ1_CIOIN 461 GKPVRVMTGHwAPVMCVAFSSNGRMLASAGEDYRIRLWD 499 689*******999*************************9 PP == domain 6 score: 27.8 bits; conditional E-value: 3.4e-08 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 g+++++ ++H + ++slaf+ dg++las++ D++v+ W+ tr|F6YGZ1|F6YGZ1_CIOIN 503 GNLVKEMRAHtDTIYSLAFNYDGSLLASCGADCSVYCWN 541 5789999***666****************99*******8 PP >> tr|A0A1W2WII7|A0A1W2WII7_CIOIN WD repeat-containing protein 38 OS=Ciona intestinalis OX=7719 GN=LOC100181559 PE=4 SV # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.6 0.1 8.2e-08 6.9e-06 3 38 .] 13 49 .. 12 49 .. 0.93 2 ! 33.7 0.0 4.7e-10 4e-08 2 37 .. 54 90 .. 53 91 .. 0.94 3 ! 22.6 2.2 1.5e-06 0.00013 2 38 .] 96 133 .. 95 133 .. 0.95 4 ! 26.3 0.2 1e-07 8.5e-06 3 38 .] 139 175 .. 137 175 .. 0.89 5 ! 24.8 0.1 3.1e-07 2.6e-05 5 38 .] 205 238 .. 203 238 .. 0.91 6 ! 17.4 0.2 6.8e-05 0.0058 4 38 .] 245 280 .. 242 280 .. 0.84 7 ? 7.8 0.1 0.072 6.1 2 29 .. 285 313 .. 284 318 .. 0.76 Alignments for each domain: == domain 1 score: 26.6 bits; conditional E-value: 8.2e-08 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++r+++GH + v+s++ s+d ++l+++sdD + +W+ tr|A0A1W2WII7|A0A1W2WII7_CIOIN 13 NIRIFRGHkGEVNSCCLSSDLQLLVTASDDSRLIVWN 49 589*****555*************************8 PP == domain 2 score: 33.7 bits; conditional E-value: 4.7e-10 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 ++l +l GH ++v+s++f pd++ ++sGs+Dg+vr+W tr|A0A1W2WII7|A0A1W2WII7_CIOIN 54 KPLCELVGHtGPVNSCQFTPDNKAVVSGSYDGSVRVW 90 789999***888************************* PP == domain 3 score: 22.6 bits; conditional E-value: 1.5e-06 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +c +l H +sv ++ +s+dg ++as s+Dg v +W+ tr|A0A1W2WII7|A0A1W2WII7_CIOIN 96 RCSMVLHEHkKSVECVNVSHDGLLVASTSWDGWVIVWN 133 6889999**999*************************8 PP == domain 4 score: 26.3 bits; conditional E-value: 1e-07 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +l++l GH ++v ++fs + +lasG++D tvr+W+ tr|A0A1W2WII7|A0A1W2WII7_CIOIN 139 LLYKLLGHkDCVKTCSFSLHDEYLASGGWDYTVRVWK 175 678889**555*************************6 PP == domain 5 score: 24.8 bits; conditional E-value: 3.1e-07 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +l+GH ++v ++afs g + as+s+D++v +W+ tr|A0A1W2WII7|A0A1W2WII7_CIOIN 205 MVLEGHtGNVQDVAFSTAGLL-ASCSWDRSVCLWN 238 6899**777*******99999.79**********8 PP == domain 6 score: 17.4 bits; conditional E-value: 6.8e-05 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +r GH ++v +++fs+++ las dD t+r+W+ tr|A0A1W2WII7|A0A1W2WII7_CIOIN 245 IRRMLGHtGWVKAISFSSSSLELASFADDDTIRVWS 280 56666**888*************86679*******5 PP == domain 7 score: 7.8 bits; conditional E-value: 0.072 EEEEEEESSSS...EEEEEEETTSSEEEEEE CS WD40 2 qclrtltGHss...vtslafspdgawlasGs 29 +c+ + H++ v +l fs++ga+la+Gs tr|A0A1W2WII7|A0A1W2WII7_CIOIN 285 ECINIHQNHTDlaqV-CL-FSQSGALLACGS 313 677777788663334.55.*********998 PP >> tr|F7A5V7|F7A5V7_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 37.3 0.4 3.3e-11 2.8e-09 2 38 .] 182 219 .. 181 219 .. 0.94 2 ! 27.1 0.0 5.8e-08 4.9e-06 2 38 .] 224 261 .. 223 261 .. 0.94 3 ! 19.2 0.6 1.8e-05 0.0015 2 38 .] 266 303 .. 265 303 .. 0.93 4 ! 20.2 0.1 8.3e-06 0.00071 3 38 .] 309 345 .. 307 345 .. 0.72 5 ? 8.2 0.0 0.052 4.4 5 37 .. 353 385 .. 349 386 .. 0.84 6 ! 27.6 0.4 3.9e-08 3.3e-06 4 38 .] 393 427 .. 390 427 .. 0.87 7 ! 10.5 0.0 0.01 0.84 11 37 .. 450 476 .. 441 477 .. 0.85 Alignments for each domain: == domain 1 score: 37.3 bits; conditional E-value: 3.3e-11 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++ r+++GH ++v+s+af p + w+++Gs D+t++iWd tr|F7A5V7|F7A5V7_CIOIN 182 KLYRVISGHlGWVRSVAFEPGNEWFVTGSNDRTIKIWD 219 6678999******************************9 PP == domain 2 score: 27.1 bits; conditional E-value: 5.8e-08 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++ +ltGH ssv++la+s +++l+s+++D+ v+ Wd tr|F7A5V7|F7A5V7_CIOIN 224 KLKLSLTGHiSSVRGLAVSARNPYLFSCGEDKMVKCWD 261 566799*******************************9 PP == domain 3 score: 19.2 bits; conditional E-value: 1.8e-05 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 + +r++ GH s ++l+ +p + l+++++D + r+Wd tr|F7A5V7|F7A5V7_CIOIN 266 KVIRHYHGHlSACYALDLHPTIDVLVTCGRDSSARVWD 303 5689*****9999***99999999*************9 PP == domain 4 score: 20.2 bits; conditional E-value: 8.3e-06 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++ tl+GH + v +++ + + ++++s D+tvr+Wd tr|F7A5V7|F7A5V7_CIOIN 309 NIMTLSGHtNTVADVKCQAALPEVITASHDCTVRLWD 345 6889****888666633333333788888*******9 PP == domain 5 score: 8.2 bits; conditional E-value: 0.052 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvriW 37 lt H +s++s+a +p + +asG +++ W tr|F7A5V7|F7A5V7_CIOIN 353 SCLTNHkKSIRSIAMHPTQYTFASGA-PDNIKQW 385 56899*999**************999.8888888 PP == domain 6 score: 27.6 bits; conditional E-value: 3.9e-08 EEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 ++ +GH+ v++la s+dg ++ sG d+gtv++Wd tr|F7A5V7|F7A5V7_CIOIN 393 IQNMSGHNAiVNCLALSSDGVLV-SGADNGTVHLWD 427 66789**7757***********7.8*9********9 PP == domain 7 score: 10.5 bits; conditional E-value: 0.01 SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 11 ssvtslafspdgawlasGsdDgtvriW 37 s+v ++af+++ + l+++ D+t++i+ tr|F7A5V7|F7A5V7_CIOIN 450 SGVFAMAFDKSESRLVTCEADKTIKIY 476 45999*************77******8 PP >> tr|H2XPM6|H2XPM6_CIOIN WD repeat-containing protein 61-like OS=Ciona intestinalis OX=7719 GN=LOC100182087 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 12.7 0.4 0.0021 0.18 9 38 .] 14 48 .. 5 48 .. 0.83 2 ! 21.2 0.2 4e-06 0.00034 4 38 .] 57 92 .. 54 92 .. 0.90 3 ! 13.2 0.0 0.0015 0.12 14 36 .. 110 132 .. 96 134 .. 0.81 4 ! 17.2 0.0 7.9e-05 0.0067 15 38 .] 153 176 .. 145 176 .. 0.93 5 ! 35.4 0.0 1.3e-10 1.1e-08 2 38 .] 181 218 .. 180 218 .. 0.95 6 ! 33.5 2.5 5.4e-10 4.6e-08 4 38 .] 225 260 .. 222 260 .. 0.94 7 ! 20.4 1.7 7.7e-06 0.00065 2 38 .] 265 302 .. 264 302 .. 0.95 Alignments for each domain: == domain 1 score: 12.7 bits; conditional E-value: 0.0021 SS.SSEEEEEEETTSSE..........EEEEETTSEEEEEE CS WD40 9 GH.ssvtslafspdgaw..........lasGsdDgtvriWd 38 +H +++++ aw +++Gs D +v+ W+ tr|H2XPM6|H2XPM6_CIOIN 14 AHdEDIWCC------AWgksekdgtehIVTGSLDDKVKCWK 48 89777****......77777777888889***********6 PP == domain 2 score: 21.2 bits; conditional E-value: 4e-06 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++l+GH ++ s++ +++g+ as+s D ++r+Wd tr|H2XPM6|H2XPM6_CIOIN 57 KWILEGHqLGIVSVDINSSGTIAASSSLDAHIRLWD 92 57899**76699***********999*********9 PP == domain 3 score: 13.2 bits; conditional E-value: 0.0015 EEEEEETTSSEEEEEETTSEEEE CS WD40 14 tslafspdgawlasGsdDgtvri 36 + +afspdg+ +a+G+ g + + tr|H2XPM6|H2XPM6_CIOIN 110 WTVAFSPDGNHIATGGQSGQILV 132 689*************9998876 PP == domain 4 score: 17.2 bits; conditional E-value: 7.9e-05 EEEEETTSSEEEEEETTSEEEEEE CS WD40 15 slafspdgawlasGsdDgtvriWd 38 s+a+s++g+++a+G +Dg ++++d tr|H2XPM6|H2XPM6_CIOIN 153 SIAYSDNGKYVACGAMDGIIKVFD 176 799***********99******98 PP == domain 5 score: 35.4 bits; conditional E-value: 1.3e-10 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++l+tl+GH +++slafspd++ l+++sdDg ++++d tr|H2XPM6|H2XPM6_CIOIN 181 RLLHTLEGHaMPIRSLAFSPDSHRLVTASDDGQIKVYD 218 689******888************************98 PP == domain 6 score: 33.5 bits; conditional E-value: 5.4e-10 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++tl+GH s+v+++af++++ +as+s D+tv+iWd tr|H2XPM6|H2XPM6_CIOIN 225 IQTLSGHsSWVHGVAFCHNNLHFASCSADKTVKIWD 260 789****777*************************9 PP == domain 7 score: 20.4 bits; conditional E-value: 7.7e-06 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 qc+ t+ H + v+s++++ +g+ l+s sdD+ ++i+d tr|H2XPM6|H2XPM6_CIOIN 265 QCVNTFYDHrDQVWSCCYNNNGSKLVSVSDDKAIHIYD 302 89*******888**************99********98 PP >> tr|F6W1H2|F6W1H2_CIOIN Coatomer subunit alpha OS=Ciona intestinalis OX=7719 GN=LOC100185196 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 12.3 0.0 0.0027 0.23 13 38 .] 12 37 .. 2 37 .. 0.85 2 ! 26.3 0.1 1.1e-07 9e-06 4 38 .] 44 79 .. 41 79 .. 0.91 3 ! 30.6 0.1 4.4e-09 3.7e-07 2 38 .] 84 121 .. 83 121 .. 0.91 4 ! 27.1 0.1 5.8e-08 4.9e-06 2 38 .] 126 163 .. 125 163 .. 0.95 5 ! 18.4 0.1 3.3e-05 0.0028 5 37 .. 208 241 .. 205 242 .. 0.90 6 ! 32.6 0.7 1e-09 8.7e-08 4 38 .] 251 286 .. 248 286 .. 0.94 Alignments for each domain: == domain 1 score: 12.3 bits; conditional E-value: 0.0027 EEEEEEETTSSEEEEE.ETTSEEEEEE CS WD40 13 vtslafspdgawlasG.sdDgtvriWd 38 v +l+f+p +w++s+ + +g + +Wd tr|F6W1H2|F6W1H2_CIOIN 12 VKGLSFHPKRPWVLSSlH-NGCIQLWD 37 999***********9966.*******9 PP == domain 2 score: 26.3 bits; conditional E-value: 1.1e-07 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 + +++ H ++v++++f++ +++++sG+dD +++iW+ tr|F6W1H2|F6W1H2_CIOIN 44 IDKFEEHdGPVRGVCFHSQQPLFVSGGDDYKIKIWN 79 557899*888*************************8 PP == domain 3 score: 30.6 bits; conditional E-value: 4.4e-09 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +cl tl GH + ++ f+++ +w++s+sdD+t+riW+ tr|F6W1H2|F6W1H2_CIOIN 84 RCLFTLLGHlDYIRTAVFHHEYPWILSASDDQTIRIWN 121 79*******999*5555********************8 PP == domain 4 score: 27.1 bits; conditional E-value: 5.8e-08 EEEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 +c+ +ltGH++ v s +f+p ++++s+s D+t r+Wd tr|F6W1H2|F6W1H2_CIOIN 126 NCIAVLTGHNHyVMSAQFHPTDDLIVSASLDQTARVWD 163 8********888*************************9 PP == domain 5 score: 18.4 bits; conditional E-value: 3.3e-05 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvriW 37 ++l+GH +v+ +f+p+ + ++++ dD+ v++W tr|F6W1H2|F6W1H2_CIOIN 208 HVLEGHdRGVNWACFHPSLPVVVTAADDRLVKLW 241 889***666*9999***********99******* PP == domain 6 score: 32.6 bits; conditional E-value: 1e-09 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 + +++GH ++v++++f+p +++++s+s+D+++r+Wd tr|F6W1H2|F6W1H2_CIOIN 251 VDSCRGHyNNVSCCSFHPRQDLIISASEDKSIRVWD 286 6689*******************************9 PP >> tr|F7ASK1|F7ASK1_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 GN=LOC100177721 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.3 0.1 7.2e-05 0.0061 6 38 .] 56 94 .. 51 94 .. 0.78 2 ! 17.2 0.0 7.5e-05 0.0064 5 38 .] 102 138 .. 98 138 .. 0.81 3 ? 4.8 0.0 0.62 53 19 37 .. 166 182 .. 153 183 .. 0.78 4 ? 2.5 0.0 3.5 2.9e+02 13 34 .. 250 270 .. 235 272 .. 0.79 5 ? 4.1 0.0 1.1 90 7 37 .. 328 359 .. 324 360 .. 0.73 6 ! 16.4 0.1 0.00013 0.011 9 38 .] 415 445 .. 406 445 .. 0.85 7 ! 22.1 0.0 2.2e-06 0.00019 8 38 .] 460 491 .. 454 491 .. 0.91 8 ? 6.7 0.0 0.16 14 14 37 .. 508 531 .. 503 532 .. 0.87 9 ! 24.5 0.0 3.7e-07 3.1e-05 2 38 .] 537 575 .. 536 575 .. 0.88 10 ! 18.5 0.2 3e-05 0.0026 8 37 .. 586 616 .. 581 617 .. 0.90 Alignments for each domain: == domain 1 score: 17.3 bits; conditional E-value: 7.2e-05 EEESS.SSEEEEEEETTSSEEEEE...ET..TSEEEEEE CS WD40 6 tltGH.ssvtslafspdgawlasG...sd..DgtvriWd 38 ltGH ++v++l +s++g++lasG ++ + + +Wd tr|F7ASK1|F7ASK1_CIOIN 56 FLTGHkNNVSCLTVSKSGKYLASGqvtHMgfKADIIVWD 94 489**888**************98654223488888887 PP == domain 2 score: 17.2 bits; conditional E-value: 7.5e-05 EEEESS.SSEEEEEEETTSSEEEE.EE.TTSEEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlas.Gs.dDgtvriWd 38 + lt H v +lafsp+ +l+s G+ dDg+v +W+ tr|F7ASK1|F7ASK1_CIOIN 102 YRLTLHkVKVEALAFSPNELYLVSlGGqDDGSVVVWN 138 5566785559************9875558*******8 PP == domain 3 score: 4.8 bits; conditional E-value: 0.62 ETTSSEEEEEETTSEEEEE CS WD40 19 spdgawlasGsdDgtvriW 37 ++d + ++++ gt+r+W tr|F7ASK1|F7ASK1_CIOIN 166 NSDDIF-VTAG-EGTLRVW 182 555556.5789.******* PP == domain 4 score: 2.5 bits; conditional E-value: 3.5 EEEEEEETTSSEEEEEETTSEE CS WD40 13 vtslafspdgawlasGsdDgtv 34 + +++ + g++l+ ++ Dgtv tr|F7ASK1|F7ASK1_CIOIN 250 IADIKILKTGDLLVGAG-DGTV 270 677888999****9447.***9 PP == domain 5 score: 4.1 bits; conditional E-value: 1.1 EESS.SSEEEEEEETTSSE.EEEEETTSEEEEE CS WD40 7 ltGH.ssvtslafspdgaw.lasGsdDgtvriW 37 ++H +v ++af+ + +a++s +r+W tr|F7ASK1|F7ASK1_CIOIN 328 VSAHyEPVADVAFPVGCSElFATCS-GDDIRVW 359 5688888888875544444358999.******* PP == domain 6 score: 16.4 bits; conditional E-value: 0.00013 SS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 9 GH.ssvtslafspdgawlasGsdDgtvriWd 38 +H s+vt++a+ d + ++sG+ g vr+Wd tr|F7ASK1|F7ASK1_CIOIN 415 AHnSGVTAIATTEDCKKIISGGGEGQVRVWD 445 8*777***************988*******9 PP == domain 7 score: 22.1 bits; conditional E-value: 2.2e-06 ESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 8 tGH.ssvtslafspdgawlasGsdDgtvriWd 38 + H s +t++++ p+g +++sdDgt+ iWd tr|F7ASK1|F7ASK1_CIOIN 460 KEHkSAITCIKVRPNGGECVTASDDGTCIIWD 491 579666*************************9 PP == domain 8 score: 6.7 bits; conditional E-value: 0.16 EEEEEETTSSEEEEEETTSEEEEE CS WD40 14 tslafspdgawlasGsdDgtvriW 37 ++++++p g +++++ D++v W tr|F7ASK1|F7ASK1_CIOIN 508 RCVCYHPMGIQIITSGTDRKVAYW 531 6**********998877***9888 PP == domain 9 score: 24.5 bits; conditional E-value: 3.7e-07 EEEEEEESS..SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH..ssvtslafspdgawlasGsdDgtvriWd 38 +++r+ +G +s+++++ spdg+ +++G+dD+ +++Wd tr|F7ASK1|F7ASK1_CIOIN 537 SQIREVEGSktGSINGMDISPDGTAVITGGDDKLIKLWD 575 5678888887455*************************9 PP == domain 10 score: 18.5 bits; conditional E-value: 3e-05 ESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 8 tGH.ssvtslafspdgawlasGsdDgtvriW 37 +GH ++vt ++ +p+ a+++s s Dg + iW tr|F7ASK1|F7ASK1_CIOIN 586 EGHsGNVTRVKMCPNRAYIVSVSQDGAILIW 616 6**655**************99********* PP >> tr|L7N0S3|L7N0S3_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 22.3 0.0 1.8e-06 0.00015 8 37 .. 11 41 .. 4 42 .. 0.84 2 ! 24.2 0.2 4.9e-07 4.1e-05 6 38 .] 51 84 .. 47 84 .. 0.95 3 ! 16.8 0.1 0.0001 0.0085 4 38 .] 91 126 .. 88 126 .. 0.90 4 ! 22.8 0.1 1.3e-06 0.00011 2 38 .] 131 168 .. 130 168 .. 0.93 5 ? 3.8 0.0 1.3 1.1e+02 13 36 .. 237 260 .. 221 262 .. 0.76 6 ! 18.7 0.0 2.5e-05 0.0021 3 37 .. 439 474 .. 437 475 .. 0.90 7 ? 10.1 0.0 0.013 1.1 12 37 .. 503 529 .. 490 529 .. 0.77 8 ! 20.7 0.1 6.1e-06 0.00052 6 37 .. 539 571 .. 534 571 .. 0.87 Alignments for each domain: == domain 1 score: 22.3 bits; conditional E-value: 1.8e-06 ESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 8 tGH.ssvtslafspdgawlasGsdDgtvriW 37 G + vt+++ sp+++ la G Dgt+ri+ tr|L7N0S3|L7N0S3_CIOIN 11 QGDnQEVTCIKSSPNSQHLAVGYVDGTIRIF 41 566345************************7 PP == domain 2 score: 24.2 bits; conditional E-value: 4.9e-07 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 6 tltGH.ssvtslafspdgawlasGsdDgtvriWd 38 t++GH + +++laf++ g lasGs D v +Wd tr|L7N0S3|L7N0S3_CIOIN 51 TFSGHrTAISCLAFDKAGMKLASGSHDTEVVVWD 84 79***999****************99*******9 PP == domain 3 score: 16.8 bits; conditional E-value: 0.0001 EEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 l+ l+GH++ +t++ f + ++l+++s+D v+ Wd tr|L7N0S3|L7N0S3_CIOIN 91 LYRLKGHKGiITDCYFVKQRNMLITSSKDTYVKWWD 126 66799**7757************************9 PP == domain 4 score: 22.8 bits; conditional E-value: 1.3e-06 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 c +t GH s v+s++ pd + +++Gs D +riW+ tr|L7N0S3|L7N0S3_CIOIN 131 HCFKTMVGHrSEVWSFCLTPDERRIITGSGDSELRIWS 168 5889999**999****************99*******5 PP == domain 5 score: 3.8 bits; conditional E-value: 1.3 EEEEEEETTSSEEEEE.ETTSEEEE CS WD40 13 vtslafspdgawlasG.sdDgtvri 36 v l++s+dg++l ++ + D+ v + tr|L7N0S3|L7N0S3_CIOIN 237 VVTLKVSKDGRLL-TChGNDKMVEF 260 77899*******8.69547998876 PP == domain 6 score: 18.7 bits; conditional E-value: 2.5e-05 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 +l t+ +H + v+++a p+++ ++sG+ D+++++W tr|L7N0S3|L7N0S3_CIOIN 439 LLETIQAHeGAVSCVALFPNKRGIVSGGPDKKIKFW 474 677889**888************************* PP == domain 7 score: 10.1 bits; conditional E-value: 0.013 S.EEEEEEETTSSEEEEEETTSEEEEE CS WD40 12 s.vtslafspdgawlasGsdDgtvriW 37 + + ++ f p+++++a++ D++v+i+ tr|L7N0S3|L7N0S3_CIOIN 503 DqILDVEFTPNNRFIAASLLDCSVKIF 529 25999**********98767*****96 PP == domain 8 score: 20.7 bits; conditional E-value: 6.1e-06 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 6 tltGH.ssvtslafspdgawlasGsdDgtvriW 37 +l GH + ++++ s+d+++++sGs D++v+iW tr|L7N0S3|L7N0S3_CIOIN 539 SLYGHsLPPSCVSISSDSTLIVSGSPDRNVKIW 571 6789*43369*********************** PP >> tr|F6PW34|F6PW34_CIOIN U5 small nuclear ribonucleoprotein 40 kDa protein-like OS=Ciona intestinalis OX=7719 GN=LOC10 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.0 0.0 9.1e-05 0.0077 4 38 .] 52 87 .. 49 87 .. 0.87 2 ! 16.2 0.2 0.00016 0.014 4 38 .] 95 131 .. 92 131 .. 0.84 3 ! 24.7 0.1 3.3e-07 2.8e-05 4 38 .] 138 174 .. 135 174 .. 0.80 4 ! 16.2 0.1 0.00016 0.014 13 38 .] 190 215 .. 178 215 .. 0.89 5 ! 21.3 0.0 3.8e-06 0.00032 6 38 .] 224 257 .. 219 257 .. 0.90 6 ! 20.7 0.3 5.9e-06 0.0005 3 38 .] 267 307 .. 265 307 .. 0.82 7 ! 22.1 0.0 2.1e-06 0.00018 2 36 .. 312 347 .. 311 347 .. 0.90 Alignments for each domain: == domain 1 score: 17.0 bits; conditional E-value: 9.1e-05 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 + ltGH + ++s +f+p+g+++as + + +++W+ tr|F6PW34|F6PW34_CIOIN 52 IMLLTGHeGEIYSSKFHPEGNMIASTGFERLIYLWN 87 56689**888*************97666*******8 PP == domain 2 score: 16.2 bits; conditional E-value: 0.00016 EEEEE.SS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtlt.GH.ssvtslafspdgawlasGsdDgtvriWd 38 ++++ GH + v +l+f+ dg+ ++++s D+tv ++d tr|F6PW34|F6PW34_CIOIN 95 FHVIKgGHkGAVLDLQFNTDGSNIITASTDKTVGLFD 131 566656**555****************99***98776 PP == domain 3 score: 24.7 bits; conditional E-value: 3.3e-07 EEEEESSSS.E.EEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGHss.v.tslafspdgawlasGsdDgtvriWd 38 ++ +GH++ v t+ + +++asGsdD+tv+iWd tr|F6PW34|F6PW34_CIOIN 138 IKRMKGHNGiVnTCTTARRGDPLVASGSDDCTVKIWD 174 56679**885666776888888899***********9 PP == domain 4 score: 16.2 bits; conditional E-value: 0.00016 EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriWd 38 +t+++f++ + +++G+ D+ +++Wd tr|F6PW34|F6PW34_CIOIN 190 ITAVSFNDTSESVITGGIDNVIKVWD 215 9************************9 PP == domain 5 score: 21.3 bits; conditional E-value: 3.8e-06 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 6 tltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +l GH + vt+l +s+dg++++s s+D+t r Wd tr|F6PW34|F6PW34_CIOIN 224 ELQGHaDTVTGLTVSKDGSFVLSNSMDCTMRKWD 257 689**777**************8899*******9 PP == domain 6 score: 20.7 bits; conditional E-value: 5.9e-06 EEEEEESSSS.....EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGHss.....vtslafspdgawlasGsdDgtvriWd 38 c+ + GH++ +++spd + +a+Gs D+ v +W+ tr|F6PW34|F6PW34_CIOIN 267 CTNLYMGHKHnfeknLLRCSWSPDDSKIAAGSSDRDVCVWN 307 5555668844458888899************99*******8 PP == domain 7 score: 22.1 bits; conditional E-value: 2.1e-06 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvri 36 q++++l GH +sv++++f+p ++ ++s+s D+ +++ tr|F6PW34|F6PW34_CIOIN 312 QLIYKLPGHdGSVNDVQFHPFQPIVMSCSSDKQIYL 347 6788999**888***************988**9975 PP >> tr|F7BKT8|F7BKT8_CIOIN Coatomer subunit beta' OS=Ciona intestinalis OX=7719 GN=LOC100178403 PE=3 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 12.7 0.0 0.0021 0.17 12 38 .] 16 43 .. 7 43 .. 0.86 2 ! 12.2 0.0 0.003 0.25 13 38 .] 60 85 .. 49 85 .. 0.81 3 ! 24.4 0.0 4.2e-07 3.6e-05 4 38 .] 92 127 .. 89 127 .. 0.91 4 ! 15.5 0.1 0.00026 0.022 1 37 [. 132 170 .. 132 171 .. 0.85 5 ! 25.1 0.1 2.4e-07 2e-05 3 38 .] 177 215 .. 175 215 .. 0.92 6 ! 36.6 0.1 5.8e-11 4.9e-09 2 37 .. 220 256 .. 219 257 .. 0.93 Alignments for each domain: == domain 1 score: 12.7 bits; conditional E-value: 0.0021 S.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 12 s.vtslafspdgawlasGsdDgtvriWd 38 + v +++ +p+ +w++ + ++g+v+iW+ tr|F7BKT8|F7BKT8_CIOIN 16 DrVKCVDLHPSEPWMLVSLYNGNVHIWN 43 3599**********998977*******8 PP == domain 2 score: 12.2 bits; conditional E-value: 0.003 EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriWd 38 v++ +f p ++w+++GsdD +r+++ tr|F7BKT8|F7BKT8_CIOIN 60 VRATRFVPRKNWVITGSDDMQIRVFN 85 445559999***************97 PP == domain 3 score: 24.4 bits; conditional E-value: 4.2e-07 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 + +++H + ++s+a++p +++++++sdD +++Wd tr|F7BKT8|F7BKT8_CIOIN 92 SHAFEAHtDYIRSIAVHPTQPYILTSSDDMLIKLWD 127 57799**555*************************9 PP == domain 4 score: 15.5 bits; conditional E-value: 0.00026 TEEEEEEESSSS.EEEEE.EETTSSEEEEEETTSEEEEE CS WD40 1 gqclrtltGHss.vtsla.fspdgawlasGsdDgtvriW 37 ++c ++++GH++ v + +++d++ +as+s D+++++W tr|F7BKT8|F7BKT8_CIOIN 132 WSCAQVFEGHTHyVMQIViNPKDNNQFASASLDCSIKVW 170 57999*****66797777688888889************ PP == domain 5 score: 25.1 bits; conditional E-value: 2.4e-07 EEEEEESS.SSEEEEE..EETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtsla..fspdgawlasGsdDgtvriWd 38 + tltGH ++v++++ + d+++l+sG dD+ +iWd tr|F7BKT8|F7BKT8_CIOIN 177 PNFTLTGHdKGVNCVDyyNGGDKPYLISGADDRLTKIWD 215 56799***999*****999999999*************9 PP == domain 6 score: 36.6 bits; conditional E-value: 5.8e-11 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 +c++tl+GH +++ +++f+p+ + +++Gs+Dgtv+iW tr|F7BKT8|F7BKT8_CIOIN 220 TCVQTLEGHsQNIVCVSFHPELPIIMTGSEDGTVKIW 256 69*******76699*********************** PP >> tr|F7AB73|F7AB73_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.2 0.1 0.026 2.2 4 37 .. 444 484 .. 442 485 .. 0.72 2 ? 8.9 0.1 0.033 2.8 21 37 .. 674 690 .. 635 690 .. 0.82 3 ! 15.4 0.6 0.00029 0.024 8 38 .] 743 774 .. 736 774 .. 0.73 4 ? 2.1 0.0 4.5 3.8e+02 8 38 .] 828 860 .. 819 860 .. 0.79 5 ? 10.2 0.7 0.012 1 8 38 .] 985 1012 .. 978 1012 .. 0.81 6 ! 10.9 0.1 0.0077 0.65 7 38 .] 1024 1055 .. 1019 1055 .. 0.93 7 ? 8.5 0.0 0.044 3.7 9 38 .] 1273 1308 .. 1266 1308 .. 0.75 8 ? 6.2 0.0 0.23 19 2 37 .. 1313 1351 .. 1312 1352 .. 0.76 9 ? 1.6 0.1 6.5 5.5e+02 8 37 .. 1368 1397 .. 1363 1398 .. 0.81 10 ! 21.8 0.4 2.7e-06 0.00023 5 38 .] 1554 1587 .. 1550 1587 .. 0.86 11 ? 9.5 0.0 0.021 1.8 12 38 .] 1603 1637 .. 1594 1637 .. 0.84 12 ! 14.7 0.0 0.00046 0.039 9 34 .. 1649 1675 .. 1642 1677 .. 0.82 13 ? 9.3 0.0 0.024 2 3 38 .] 1685 1735 .. 1683 1735 .. 0.79 14 ! 16.9 0.0 9.4e-05 0.0079 6 38 .] 1851 1883 .. 1847 1883 .. 0.90 Alignments for each domain: == domain 1 score: 9.2 bits; conditional E-value: 0.026 EEEEESS.SSEEEEEEETTSSE..........EEEE..ETTSEEEEE CS WD40 4 lrtltGH.ssvtslafspdgaw..........lasG..sdDgtvriW 37 ++ + GH svt++a + las+ + g vriW tr|F7AB73|F7AB73_CIOIN 444 QHFFIGHtESVTAIA------FnqmhgaapciLASAqsGAGGIVRIW 484 7889***888****6......4444455677666645456******* PP == domain 2 score: 8.9 bits; conditional E-value: 0.033 TSSEEEEEETTSEEEEE CS WD40 21 dgawlasGsdDgtvriW 37 +++a+GsdDg +r+W tr|F7AB73|F7AB73_CIOIN 674 TDSYVATGSDDGFLRLW 690 45679************ PP == domain 3 score: 15.4 bits; conditional E-value: 0.00029 ESSSS.E..EEEEEETTSSEEEEEETTSEEEEEE CS WD40 8 tGHss.v..tslafspdgawlasGsdDgtvriWd 38 + H+s + t++ + + ++++sdD+t+r+Wd tr|F7AB73|F7AB73_CIOIN 743 RSHTSvIrdTCI--DGLRRTISTCSDDHTIRVWD 774 578664555555..55556699***********9 PP == domain 4 score: 2.1 bits; conditional E-value: 4.5 ESS.SS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 8 tGH.ss.vtslafspdgawlasGsdDgtvriWd 38 H +s v ++ f +g l+s++++gt+ ++d tr|F7AB73|F7AB73_CIOIN 828 QVHsGSkVAAIVFTASGERLISACEKGTLALFD 860 456433799999************9***98876 PP == domain 5 score: 10.2 bits; conditional E-value: 0.012 ESSSSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 8 tGHssvtslafspdgawlasGsdDgtvriWd 38 +G ++v ++ +d + l+s++ D+ +++Wd tr|F7AB73|F7AB73_CIOIN 985 RGNTNVVCV--TDDCSHLVSAG-DKLIKVWD 1012 455558888..8888889999*.*******9 PP == domain 6 score: 10.9 bits; conditional E-value: 0.0077 EESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 7 ltGH.ssvtslafspdgawlasGsdDgtvriWd 38 + GH s+v+ + f pd l+++s g + iWd tr|F7AB73|F7AB73_CIOIN 1024 FIGHsSPVHRIMFTPDRLSLITAS-EGAIFIWD 1055 78**888*****************.*******9 PP == domain 7 score: 8.5 bits; conditional E-value: 0.044 SS.SSEEEEEEETTSSEEEEEE.....TTSEEEEEE CS WD40 9 GH.ssvtslafspdgawlasGs.....dDgtvriWd 38 H +++la ++dg las+s + +Wd tr|F7AB73|F7AB73_CIOIN 1273 EHeEEISCLAIQHDGEILASASgsnglVQSIICLWD 1308 48666*************865422444499999998 PP == domain 8 score: 6.2 bits; conditional E-value: 0.23 EEEEEEESS.SSEEEEEEETTSSEEEEEET..TSEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsd..DgtvriW 37 c +l+ H sv s+a+s+d ++l++ +d +++ +W tr|F7AB73|F7AB73_CIOIN 1313 VCRAKLKHHeYSVVSMAYSRDDRFLVTVGDyqENSLAVW 1351 57788999976699***********98774336666666 PP == domain 9 score: 1.6 bits; conditional E-value: 6.5 ESSSSEEEEEEETTSSE..EEEEETTSEEEEE CS WD40 8 tGHssvtslafspdgaw..lasGsdDgtvriW 37 t H s++ + ++p+++ ++ Gs ++ +W tr|F7AB73|F7AB73_CIOIN 1368 TNH-SINQVTWDPSNPNefVTVGS-SSSLLFW 1397 467.8*****99999999776788.8888888 PP == domain 10 score: 21.8 bits; conditional E-value: 2.7e-06 EEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 5 rtltGHss.vtslafspdgawlasGsdDgtvriWd 38 + +GH++ +++++f+ +g++ a++s+Dg v +W+ tr|F7AB73|F7AB73_CIOIN 1554 KLVSGHKDkINGISFDNNGHF-ATCSEDGVVQLWS 1587 5578**666************.79**********5 PP == domain 11 score: 9.5 bits; conditional E-value: 0.021 SEEEEEEETTSSE........EEEEETTSEEEEEE CS WD40 12 svtslafspdgaw........lasGsdDgtvriWd 38 s ts+ fs+++a +a+G Dgt+r++d tr|F7AB73|F7AB73_CIOIN 1603 SCTSVVFSHSSATqtvgppnmVAAGYSDGTIRVFD 1637 568899999999999999998999955******98 PP == domain 12 score: 14.7 bits; conditional E-value: 0.00046 SSSS..EEEEEEETTSSEEEEEETTSEE CS WD40 9 GHss..vtslafspdgawlasGsdDgtv 34 H + vtsl+fs+d++ l+sG Dgt+ tr|F7AB73|F7AB73_CIOIN 1649 PH-PtvVTSLQFSSDNNTLLSGASDGTI 1675 57.4448***************66***9 PP == domain 13 score: 9.3 bits; conditional E-value: 0.024 EEEEEESSSS..EEEEE........EETTSSE......EEEEETTSEEEEEE CS WD40 3 clrtltGHss..vtsla........fspdgaw......lasGsdDgtvriWd 38 +lr+l+ H++ ++ ++ +sp+g l+ +s D+ v +Wd tr|F7AB73|F7AB73_CIOIN 1685 TLRVLRDHKGapINNISvsareltkNSPSGENhsprlsLF-CSADRRVSVWD 1735 7899****4446998888899*99*888888877776666.566*******9 PP == domain 14 score: 16.9 bits; conditional E-value: 9.4e-05 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 6 tltGH.ssvtslafspdgawlasGsdDgtvriWd 38 + GH +vt afsp+g++l+++s g + +Wd tr|F7AB73|F7AB73_CIOIN 1851 DYVGHgRDVTQAAFSPSGKLLLTAS-GGELFVWD 1883 578**777*****************.*******9 PP >> tr|Q86SD3|Q86SD3_CIOIN Beta-transducin repeat-containing HOMOLOGUE protein OS=Ciona intestinalis OX=7719 GN=Ci-betaT # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.7 0.2 0.00048 0.04 11 38 .] 320 345 .. 308 345 .. 0.78 2 ! 26.3 0.1 1e-07 8.5e-06 2 38 .] 350 385 .. 349 385 .. 0.87 3 ! 12.1 0.3 0.0031 0.26 2 38 .] 390 425 .. 389 425 .. 0.78 4 ! 20.1 0.1 9e-06 0.00076 5 38 .] 436 468 .. 432 468 .. 0.84 5 ! 23.2 0.1 9.6e-07 8.1e-05 3 38 .] 474 508 .. 472 508 .. 0.86 6 ! 26.8 0.0 7.3e-08 6.2e-06 1 38 [] 512 548 .. 512 548 .. 0.87 7 ! 13.5 0.1 0.0012 0.099 3 38 .] 563 597 .. 562 597 .. 0.80 Alignments for each domain: == domain 1 score: 14.7 bits; conditional E-value: 0.00048 SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 11 ssvtslafspdgawlasGsdDgtvriWd 38 ++v++l + d + ++sG +D+t+++Wd tr|Q86SD3|Q86SD3_CIOIN 320 KGVYCL--QYDDDKIVSGLRDNTIKLWD 345 5599**..555555779*99*******9 PP == domain 2 score: 26.3 bits; conditional E-value: 1e-07 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +++++ltGH +sv +l + d + +++Gs D tvr+Wd tr|Q86SD3|Q86SD3_CIOIN 350 ENTKVLTGHtGSVLCL--QYDERVIITGSSDSTVRVWD 385 57899****888****..66666699**99*******9 PP == domain 3 score: 12.1 bits; conditional E-value: 0.0031 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +++ tl H v +l d+ +++++s+D+++ +Wd tr|Q86SD3|Q86SD3_CIOIN 390 DLVNTLVHHcEAVLHL--RFDNGLMVTCSKDRSIAVWD 425 5677888885559999..44677789***********9 PP == domain 4 score: 20.1 bits; conditional E-value: 9e-06 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 r+l GH v+ + + d ++++s+s D+t+++W+ tr|Q86SD3|Q86SD3_CIOIN 436 RVLVGHrAAVNVV--DFDDKYIVSASGDRTIKVWN 468 7899**8888777..669999998877*******8 PP == domain 5 score: 23.2 bits; conditional E-value: 9.6e-07 EEEEEESS.SSEEEEEEETTSSE....EEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgaw....lasGsdDgtvriWd 38 +rtl GH ++ +l ++ ++sGs D+t+r+Wd tr|Q86SD3|Q86SD3_CIOIN 474 FVRTLNGHrRGIACL------QYrdrlVVSGSSDNTIRLWD 508 689*****888****......66666589**99*******9 PP == domain 6 score: 26.8 bits; conditional E-value: 7.3e-08 TEEEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 1 gqclrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 g clr+l+GH v+++ d++ ++sG +Dg++++Wd tr|Q86SD3|Q86SD3_CIOIN 512 GACLRILEGHEElVRCI--RFDNKRIVSGAYDGKIKVWD 548 57********446****..55777799**99*******9 PP == domain 7 score: 13.5 bits; conditional E-value: 0.0012 EEEEEESS.SSEEEEEEETTSSE....EEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgaw....lasGsdDgtvriWd 38 clrtl H + v l ++ ++s+s D ++ iWd tr|Q86SD3|Q86SD3_CIOIN 563 CLRTLVEHtGRVFRL------QFdefqIVSSSHDDSILIWD 597 99******666****......555555556766*******9 PP >> tr|F6Z7E0|F6Z7E0_CIOIN Katanin p80 WD40 repeat-containing subunit B1 OS=Ciona intestinalis OX=7719 GN=KATNB1 PE=3 SV # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.8 0.1 0.00044 0.038 3 37 .. 10 46 .. 8 47 .. 0.86 2 ! 12.9 0.0 0.0017 0.15 3 38 .] 53 89 .. 51 89 .. 0.80 3 ! 37.7 0.6 2.5e-11 2.1e-09 3 38 .] 95 131 .. 93 131 .. 0.92 4 ! 40.0 1.1 4.9e-12 4.1e-10 3 38 .] 137 173 .. 135 173 .. 0.89 5 ! 23.3 0.0 9.1e-07 7.7e-05 1 38 [] 177 215 .. 177 215 .. 0.93 Alignments for each domain: == domain 1 score: 14.8 bits; conditional E-value: 0.00044 EEEEEESSSS.EEEEE.EETTSSEEEEEETTSEEEEE CS WD40 3 clrtltGHss.vtsla.fspdgawlasGsdDgtvriW 37 +l+++ GH+s vts ++g+ +a+G++Dg+v +W tr|F6Z7E0|F6Z7E0_CIOIN 10 KLQEFVGHGSvVTSATlGKKSGRVMATGGEDGKVNMW 46 688999**7757999888888888************* PP == domain 2 score: 12.9 bits; conditional E-value: 0.0017 EEEEEESS..SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH..ssvtslafspdgawlasGsdDgtvriWd 38 c+ tl+ s v l+f+++ ++++Gs+ g +riW+ tr|F6Z7E0|F6Z7E0_CIOIN 53 CIMTLS-PltSAVETLQFNSSEEFVCAGSRSGALRIWN 89 555654.2223499999********************8 PP == domain 3 score: 37.7 bits; conditional E-value: 2.5e-11 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +r ltGH v+s++f+++g++++sGsdD++vr+Wd tr|F6Z7E0|F6Z7E0_CIOIN 95 VVRQLTGHkAAVRSVDFHSYGDFVTSGSDDHKVRMWD 131 6899****666*************************9 PP == domain 4 score: 40.0 bits; conditional E-value: 4.9e-12 EEEEEESS.SSEEEEEEETTSSEEEEE..ETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasG..sdDgtvriWd 38 c+ t++GH +sv++++fspdg+w+ G s D+t+++Wd tr|F6Z7E0|F6Z7E0_CIOIN 137 CIFTYKGHeDSVNCVQFSPDGRWI--GsvSNDKTCKLWD 173 999*****999************8..62357*******9 PP == domain 5 score: 23.3 bits; conditional E-value: 9.1e-07 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 g++l++l H +vt+l f+p +la+Gs D+t i+d tr|F6Z7E0|F6Z7E0_CIOIN 177 GKLLHELNDHsAGVTCLTFHPRELLLATGSTDRTTNIYD 215 6899******666*********************99998 PP >> tr|H2XZV4|H2XZV4_CIOIN guanine nucleotide-binding protein subunit beta-5 OS=Ciona intestinalis OX=7719 GN=LOC1001857 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.2 0.3 1.1e-07 9.6e-06 2 38 .] 55 92 .. 54 92 .. 0.93 2 ? 7.2 0.1 0.11 9.1 12 36 .. 108 132 .. 99 133 .. 0.88 3 ? 9.8 0.1 0.017 1.4 10 38 .] 175 204 .. 167 204 .. 0.75 4 ! 19.1 0.2 2e-05 0.0017 1 38 [] 208 248 .. 208 248 .. 0.88 5 ! 32.1 0.0 1.5e-09 1.2e-07 2 38 .] 253 290 .. 252 290 .. 0.95 6 ! 12.8 0.2 0.0019 0.16 12 38 .] 308 334 .. 302 334 .. 0.91 7 ! 31.0 0.1 3.3e-09 2.8e-07 3 37 .. 340 375 .. 338 375 .. 0.90 Alignments for each domain: == domain 1 score: 26.2 bits; conditional E-value: 1.1e-07 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +c r+l+GH + v ++++s d++ ++s+s Dg++ +Wd tr|H2XZV4|H2XZV4_CIOIN 55 RCRRILKGHtGKVLDMDWSLDKRRIVSSSQDGKILVWD 92 699******666*************************9 PP == domain 2 score: 7.2 bits; conditional E-value: 0.11 SEEEEEEETTSSEEEEEETTSEEEE CS WD40 12 svtslafspdgawlasGsdDgtvri 36 +v+++a+ p+g +a+G+ D+++ + tr|H2XZV4|H2XZV4_CIOIN 108 WVNACAYAPSGGSIACGGLDNKCSV 132 69****************9*99876 PP == domain 3 score: 9.8 bits; conditional E-value: 0.017 S.SSEEEEE.EETTSSEEEEEETTSEEEEEE CS WD40 10 H.ssvtsla.fspdgawlasGsdDgtvriWd 38 H s ++++ +++d + l++++ D t+ +Wd tr|H2XZV4|H2XZV4_CIOIN 175 HtSYISACTfTHSDYQILTASG-DSTCALWD 204 7555877775677777776667.*******9 PP == domain 4 score: 19.1 bits; conditional E-value: 2e-05 TEEEEEEESS.SSE..EEEEEETTSSEEEEEETTSEEEEEE CS WD40 1 gqclrtltGH.ssv..tslafspdgawlasGsdDgtvriWd 38 gq+l+++ GH s+v +l+ + g++++sG+ D++ +Wd tr|H2XZV4|H2XZV4_CIOIN 208 GQLLQSFHGHqSDVmdAALSPCETGNLFISGGCDKNACVWD 248 689*******999*5556669999999****88*******9 PP == domain 5 score: 32.1 bits; conditional E-value: 1.5e-09 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +c++++ +H s+++ +++ p g +a+GsdDgt++++d tr|H2XZV4|H2XZV4_CIOIN 253 KCIQSFQTHnSDINTVKWFPTGEAFATGSDDGTIKMYD 290 79*******888************************98 PP == domain 6 score: 12.8 bits; conditional E-value: 0.0019 SEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 12 svtslafspdgawlasGsdDgtvriWd 38 +v+s++fs +g+ ++ G D v++Wd tr|H2XZV4|H2XZV4_CIOIN 308 GVNSVDFSVSGRIVLGGYNDYLVHVWD 334 59*************7778*******9 PP == domain 7 score: 31.0 bits; conditional E-value: 3.3e-09 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 +l+ l GH + +++l+ spdg+ +++Gs+D t+riW tr|H2XZV4|H2XZV4_CIOIN 340 KLTALFGHeNRISCLKMSPDGTSFCTGSWDTTLRIW 375 556666**999************************* PP >> tr|F6SP32|F6SP32_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 GN=LOC100180728 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.1 0.2 1.1e-06 9e-05 5 37 .. 131 164 .. 128 164 .. 0.89 2 ! 24.5 0.4 3.7e-07 3.2e-05 5 38 .] 186 217 .. 178 217 .. 0.84 3 ! 28.0 0.9 3e-08 2.6e-06 3 38 .] 223 259 .. 221 259 .. 0.95 4 ! 20.9 0.1 5.3e-06 0.00045 5 38 .] 267 301 .. 264 301 .. 0.81 5 ! 22.0 0.2 2.4e-06 0.0002 3 37 .. 306 340 .. 304 340 .. 0.88 6 ! 21.6 0.1 3.1e-06 0.00026 12 38 .] 360 391 .. 346 391 .. 0.79 Alignments for each domain: == domain 1 score: 23.1 bits; conditional E-value: 1.1e-06 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvriW 37 +l+GH vt++a+s++g+++++Gs+D+++ W tr|F6SP32|F6SP32_CIOIN 131 SVLKGHrLTVTCMAVSQNGDMVFTGSKDCSIIKW 164 689***766*********************9766 PP == domain 2 score: 24.5 bits; conditional E-value: 3.7e-07 EEEESSSSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 5 rtltGHssvtslafspdgawlasGsdDgtvriWd 38 ++ tGH v +la +dg++lasGs D+ + iW+ tr|F6SP32|F6SP32_CIOIN 186 KHHTGH--VLCLALTSDGTYLASGSIDKLILIWS 217 455677..*************************5 PP == domain 3 score: 28.0 bits; conditional E-value: 3e-08 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +++t+ GH ++v +laf +++ l+s+s D+tv++Wd tr|F6SP32|F6SP32_CIOIN 223 HIHTFAGHrDGVLGLAFRTNSHQLFSSSQDRTVKVWD 259 789*****999*************************9 PP == domain 4 score: 20.9 bits; conditional E-value: 5.3e-06 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 tl GH +svt+++ + +++G++Dgt+r+W+ tr|F6SP32|F6SP32_CIOIN 267 ETLYGHqDSVTACDSLIRERCVTAGGRDGTIRVWK 301 5789**888****55555555999**********6 PP == domain 5 score: 22.0 bits; conditional E-value: 2.4e-06 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 + ++ GH +sv +++f + +++ sGsdDg++ +W tr|F6SP32|F6SP32_CIOIN 306 SQLVYHGHtGSVDCVKFINEEHMI-SGSDDGSICLW 340 567899**888****999999997.8********** PP == domain 6 score: 21.6 bits; conditional E-value: 3.1e-06 S.....EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 12 s.....vtslafspdgawlasGsdDgtvriWd 38 s +t+++ ++++++a+Gs Dg +r+W+ tr|F6SP32|F6SP32_CIOIN 360 SsrqtwITAVCSMRNSDLVATGSSDGYIRLWK 391 145666****************99*******6 PP >> tr|H2Y0G9|H2Y0G9_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.4 0.0 8.5e-07 7.2e-05 1 38 [] 370 408 .. 370 408 .. 0.94 2 ! 21.4 0.1 3.5e-06 0.0003 2 38 .] 424 461 .. 423 461 .. 0.91 3 ! 23.8 0.5 6.5e-07 5.5e-05 4 38 .] 479 514 .. 476 514 .. 0.89 4 ? 6.3 0.4 0.21 18 9 38 .] 529 557 .. 521 557 .. 0.70 5 ? 8.6 0.1 0.041 3.5 12 38 .] 578 604 .. 566 604 .. 0.88 6 ! 33.9 0.3 4.1e-10 3.5e-08 1 38 [] 609 647 .. 609 647 .. 0.96 7 ! 16.9 0.0 9.6e-05 0.0081 2 32 .. 652 687 .. 651 692 .] 0.84 Alignments for each domain: == domain 1 score: 23.4 bits; conditional E-value: 8.5e-07 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +++ +tl+ H +++++++f p+ + ++++s+D+t ++W+ tr|H2Y0G9|H2Y0G9_CIOIN 370 WNPKYTLRSHfDGIRAIRFLPNESSVITASEDHTMKLWN 408 57889*****777*************************8 PP == domain 2 score: 21.4 bits; conditional E-value: 3.5e-06 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +++++++GH + v sl + +g+ +sG+ D tvr+W+ tr|H2Y0G9|H2Y0G9_CIOIN 424 EPIYSFRGHsGAVLSLEIDTEGSSCFSGGLDSTVRVWS 461 5899*****555*************************5 PP == domain 3 score: 23.8 bits; conditional E-value: 6.5e-07 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +++l GH + v+sl++s + l+s+s D++vr+W+ tr|H2Y0G9|H2Y0G9_CIOIN 479 QKILVGHtDAVWSLSYSGTRQQLLSASSDCSVRLWN 514 78999**666************999988*******8 PP == domain 4 score: 6.3 bits; conditional E-value: 0.21 SSSSEEEEE.EETTSSEEEEEETTSEEEEEE CS WD40 9 GHssvtsla.fspdgawlasGsdDgtvriWd 38 G ts++ ++ d++ ++ ++ Dg+v ++d tr|H2Y0G9|H2Y0G9_CIOIN 529 GT--PTSVCfVHCDSNHVVVSHTDGKVNLYD 557 44..3455556889999999999******98 PP == domain 5 score: 8.6 bits; conditional E-value: 0.041 SEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 12 svtslafspdgawlasGsdDgtvriWd 38 s++++ +p + ++++dD++++++d tr|H2Y0G9|H2Y0G9_CIOIN 578 SINCVVSHPTMPVTMTAHDDKHIKFYD 604 49***99999999889*********98 PP == domain 6 score: 33.9 bits; conditional E-value: 4.1e-10 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 g+++++ +H +svtsl+++p+g +l+sGs D ++r+W+ tr|H2Y0G9|H2Y0G9_CIOIN 609 GKLIHSMVAHlDSVTSLSVDPNGLYLLSGSHDSSIRLWN 647 6889*************************99*******8 PP == domain 7 score: 16.9 bits; conditional E-value: 9.6e-05 EEEEEEESS..SS...EEEEEEETTSSEEEEEETTS CS WD40 2 qclrtltGH..ss...vtslafspdgawlasGsdDg 32 +c+++lt H ++ ++s+af+p+ +++as++ D tr|H2Y0G9|H2Y0G9_CIOIN 652 TCIQELTSHrkKFdesIYSVAFHPSATYIASAGADA 687 699******9644899**************998886 PP >> tr|F6WIG7|F6WIG7_CIOIN WD40 repeat-containing protein SMU1 OS=Ciona intestinalis OX=7719 GN=LOC100180093 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.8 0.0 1.6e-08 1.4e-06 9 38 .] 213 243 .. 205 243 .. 0.86 2 ! 18.4 0.0 3.1e-05 0.0026 13 38 .] 268 293 .. 255 293 .. 0.93 3 ! 25.9 0.1 1.4e-07 1.2e-05 1 36 [. 297 334 .. 297 335 .. 0.94 4 ! 23.1 0.1 1.1e-06 9e-05 1 38 [] 340 378 .. 340 378 .. 0.89 5 ? 5.0 0.0 0.53 45 2 35 .. 430 467 .. 429 470 .. 0.68 6 ! 18.4 0.0 3.2e-05 0.0027 1 38 [] 474 512 .. 474 512 .. 0.93 Alignments for each domain: == domain 1 score: 28.8 bits; conditional E-value: 1.6e-08 SS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 9 GH.ssvtslafspdgawlasGsdDgtvriWd 38 G+ s+v + +fspdg++l++Gs Dg + +W+ tr|F6WIG7|F6WIG7_CIOIN 213 GQkSHVECARFSPDGQYLVTGSVDGFIEVWN 243 67566*************************8 PP == domain 2 score: 18.4 bits; conditional E-value: 3.1e-05 EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriWd 38 v +lafs+d+ +lasG+ g++++W+ tr|F6WIG7|F6WIG7_CIOIN 268 VLCLAFSRDSEMLASGDQEGKIKVWK 293 89***********************6 PP == domain 3 score: 25.9 bits; conditional E-value: 1.4e-07 TEEEEEEE.SS.SSEEEEEEETTSSEEEEEETTSEEEE CS WD40 1 gqclrtlt.GH.ssvtslafspdgawlasGsdDgtvri 36 gqclr ++ +H ++vts++fs+dg+ ++s+s D+t+++ tr|F6WIG7|F6WIG7_CIOIN 297 GQCLRRFErAHtKGVTSVSFSKDGSQVLSASFDQTIKV 334 79*****55**999****************99****98 PP == domain 4 score: 23.1 bits; conditional E-value: 1.1e-06 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 g++l++ +GH s+v+ f dg+ ++s+s Dg+v+iW+ tr|F6WIG7|F6WIG7_CIOIN 340 GKTLKEMRGHsSFVNEAVFMLDGHHVISASSDGNVKIWN 378 5789999***777*8888999****999988*******8 PP == domain 5 score: 5.0 bits; conditional E-value: 0.53 EEEEEEE.SS.SS...EEEEEEETTSSEEEEEETTSEEE CS WD40 2 qclrtlt.GH.ss...vtslafspdgawlasGsdDgtvr 35 q++r+++ G + v + +sp g w+ + ++D+ ++ tr|F6WIG7|F6WIG7_CIOIN 430 QTVRSFSsGKrEGgdfV-CATVSPRGEWIYCVGEDKVLY 467 56666653333113447.8889*******9889999876 PP == domain 6 score: 18.4 bits; conditional E-value: 3.2e-05 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 g++ rtlt H ++v +++ +p+ +++a+ s+Dg +r+W+ tr|F6WIG7|F6WIG7_CIOIN 474 GKLERTLTVHeKDVIGISHHPHTNLIATYSEDGLLRLWK 512 57789********99***********9989********6 PP >> tr|F6VRH3|F6VRH3_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.0 0.0 0.029 2.5 8 37 .. 94 124 .. 88 125 .. 0.79 2 ? 5.9 0.0 0.29 24 2 37 .. 137 173 .. 136 173 .. 0.85 3 ? 6.1 0.0 0.24 20 4 37 .. 183 217 .. 180 218 .. 0.75 4 ? 9.7 0.0 0.018 1.5 3 37 .. 307 343 .. 305 344 .. 0.77 5 ! 35.3 0.0 1.5e-10 1.2e-08 8 38 .] 355 386 .. 347 386 .. 0.90 6 ! 21.4 0.8 3.7e-06 0.00031 3 37 .. 392 427 .. 390 428 .. 0.89 7 ? 6.2 0.0 0.24 20 5 31 .. 436 464 .. 432 471 .. 0.75 8 ! 27.9 0.1 3.3e-08 2.8e-06 2 37 .. 477 513 .. 476 514 .. 0.92 9 ? 3.6 0.0 1.5 1.3e+02 13 37 .. 686 710 .. 675 711 .. 0.80 Alignments for each domain: == domain 1 score: 9.0 bits; conditional E-value: 0.029 ESS..SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 8 tGH..ssvtslafspdgawlasGsdDgtvriW 37 + H +++ ++++spdg+ +a ++D+ v ++ tr|F6VRH3|F6VRH3_CIOIN 94 RHHfrKPIKCIKYSPDGRKFA-VTKDNLVLVY 124 3567778************97.5779888776 PP == domain 2 score: 5.9 bits; conditional E-value: 0.29 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 q++rt+ G + t++++ d++ +a G+ D + r++ tr|F6VRH3|F6VRH3_CIOIN 137 QLQRTFYGAyGETTCIDWTTDSRAFAVGGSDMNTRVY 173 7899999998889****99999999999779888875 PP == domain 3 score: 6.1 bits; conditional E-value: 0.24 EEEEESSSS..EEEEEEETTSSEEEEEETTSEEEEE CS WD40 4 lrtltGHss..vtslafspdgawlasGsdDgtvriW 37 +++l +H++ + ++ f ++ + + s+Dgt+ +W tr|F6VRH3|F6VRH3_CIOIN 183 VYSLGAHKDeiIGCF-FEANSLDIYTVSRDGTLNVW 217 567889966655555.66666668999********* PP == domain 4 score: 9.7 bits; conditional E-value: 0.018 EEEEEE..SSSSEEEEEEETTSSEEE.EEETTSEEEEE CS WD40 3 clrtlt..GHssvtslafspdgawla.sGsdDgtvriW 37 ++++l+ H +t+ af+ g+wla ++s g + +W tr|F6VRH3|F6VRH3_CIOIN 307 LIHSLSisEH-RITAAAFNNTGDWLAlASSALGQLLVW 343 5677653388.8************86667768888888 PP == domain 5 score: 35.3 bits; conditional E-value: 1.5e-10 ESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 8 tGH.ssvtslafspdgawlasGsdDgtvriWd 38 GH s+ t+l++spdg+++++G++Dg+v++W+ tr|F6VRH3|F6VRH3_CIOIN 355 QGHySGMTCLDYSPDGRYIVTGGEDGKVKVWN 386 49*999*************************8 PP == domain 6 score: 21.4 bits; conditional E-value: 3.7e-06 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 c t++ H s+vt+++f ++g+ ++s+s Dgtvr + tr|F6VRH3|F6VRH3_CIOIN 392 CFVTFSEHkSNVTGVCFTSSGHVIISSSLDGTVRAF 427 7889****777**********************965 PP == domain 7 score: 6.2 bits; conditional E-value: 0.24 EEEESS...SSEEEEEEETTSSEEEEEETT CS WD40 5 rtltGH...ssvtslafspdgawlasGsdD 31 rt+t ++v +l+++ +g ++a+Gs+D tr|F6VRH3|F6VRH3_CIOIN 436 RTFTSPrptQFV-CLSVDGSGELVAAGSRD 464 555544332237.***************98 PP == domain 8 score: 27.9 bits; conditional E-value: 3.3e-08 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 ++l +l +H +v+slafsp + lasGs+D++v +W tr|F6VRH3|F6VRH3_CIOIN 477 RLLDILAAHeAPVSSLAFSPTESILASGSWDHSVIVW 513 6778899**999************************* PP == domain 9 score: 3.6 bits; conditional E-value: 1.5 EEEEEEETTSSEEE.EEETTSEEEEE CS WD40 13 vtslafspdgawla.sGsdDgtvriW 37 v + +fsp g++l+ + +++++++ tr|F6VRH3|F6VRH3_CIOIN 686 VFDAKFSPTGKYLLiICL-KKHIKVF 710 66778*******753788.9999997 PP >> tr|F7A1R5|F7A1R5_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.6 0.0 0.00012 0.01 6 37 .. 9 42 .. 4 43 .. 0.87 2 ! 18.3 0.0 3.4e-05 0.0029 2 37 .. 52 94 .. 51 94 .. 0.91 3 ! 21.9 0.1 2.5e-06 0.00021 2 37 .. 100 135 .. 99 135 .. 0.93 4 ! 11.3 0.0 0.0055 0.47 1 37 [. 145 183 .. 145 184 .. 0.83 5 ! 18.4 0.1 3.2e-05 0.0027 1 37 [. 186 222 .. 186 223 .. 0.90 6 ! 29.9 0.1 7.4e-09 6.3e-07 1 37 [. 226 263 .. 226 264 .. 0.96 7 ? 2.3 0.0 3.9 3.3e+02 12 37 .. 280 304 .. 269 305 .. 0.75 Alignments for each domain: == domain 1 score: 16.6 bits; conditional E-value: 0.00012 EEESS.SSEEEEE..EETTSSEEEEEETTSEEEEE CS WD40 6 tltGH.ssvtsla..fspdgawlasGsdDgtvriW 37 t++GH +v++l+ +p +++l s+s+D+t ++W tr|F7A1R5|F7A1R5_CIOIN 9 TIRGHeADVRGLCptSNPPNSFL-SSSRDQTAKLW 42 779**999*****9999999998.6788******* PP == domain 2 score: 18.3 bits; conditional E-value: 3.4e-05 EEEEEEESS.SSEEEEE.......EETTSSEEEEEETTSEEEEE CS WD40 2 qclrtltGH.ssvtsla.......fspdgawlasGsdDgtvriW 37 q++++++GH ++v+++a pdg + +Gs D++++++ tr|F7A1R5|F7A1R5_CIOIN 52 QQQQVFKGHkNFVSCIAvmnaaneIYPDGLIF-TGSNDHNIHVY 94 7899*****999*******9999999999997.7*******996 PP == domain 3 score: 21.9 bits; conditional E-value: 2.5e-06 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 +++ +l GH +sv+sla+ + g+++ sGs+D++ r+W tr|F7A1R5|F7A1R5_CIOIN 100 EPIMVLAGHsNSVSSLAVGKFGTLV-SGSWDKSARLW 135 578899***999************7.8********** PP == domain 4 score: 11.3 bits; conditional E-value: 0.0055 TEEEEEEESS.SSEEEEEEETTSSEEE.EEETTSEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgawla.sGsdDgtvriW 37 g+c + GH v+++ p+++ l+ ++ D+t+r W tr|F7A1R5|F7A1R5_CIOIN 145 GKCAMVMQGHiAAVWDVIIMPEQQGLViTAAADKTIRSW 183 68889999**999****988888886547777******* PP == domain 5 score: 18.4 bits; conditional E-value: 3.2e-05 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 g+cl +++GH ++v++la ++ ++l s+s D t+r W tr|F7A1R5|F7A1R5_CIOIN 186 GKCLNVFKGHtDCVRGLAALSSEQFL-SCSNDATIRRW 222 79********777************8.6888*****98 PP == domain 6 score: 29.9 bits; conditional E-value: 7.4e-09 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 gqcl+t+ GH ++v+s+ + dg+ ++++s+D++v++W tr|F7A1R5|F7A1R5_CIOIN 226 GQCLQTYYGHsNFVYSVTVLNDGQEFVTSSEDRSVKVW 263 79********888************************* PP == domain 7 score: 2.3 bits; conditional E-value: 3.9 SEEEEEEETTSSEEEEEETTSEEEEE CS WD40 12 svtslafspdgawlasGsdDgtvriW 37 sv+++ + + + + Gs D t+ri+ tr|F7A1R5|F7A1R5_CIOIN 280 SVWDVVTLENDDIAF-GSSDATIRIF 304 588887777888877.766*****96 PP >> tr|F7A7C3|F7A7C3_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.3 0.0 0.051 4.3 12 38 .] 164 190 .. 151 190 .. 0.87 2 ! 21.1 0.1 4.5e-06 0.00038 5 37 .. 198 231 .. 194 232 .. 0.91 3 ! 27.4 0.0 4.5e-08 3.8e-06 2 38 .] 236 274 .. 235 274 .. 0.91 4 ! 15.2 0.1 0.00032 0.027 2 31 .. 279 309 .. 278 312 .. 0.91 5 ! 25.1 0.2 2.4e-07 2e-05 1 38 [] 322 360 .. 322 360 .. 0.91 6 ? 7.3 0.0 0.1 8.8 4 37 .. 368 403 .. 365 404 .. 0.80 7 ! 20.4 1.5 7.2e-06 0.00061 4 37 .. 411 446 .. 408 447 .. 0.85 Alignments for each domain: == domain 1 score: 8.3 bits; conditional E-value: 0.051 SEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 12 svtslafspdgawlasGsdDgtvriWd 38 +v+ + + pdg+ l++Gs g +W+ tr|F7A7C3|F7A7C3_CIOIN 164 PVYKVVWTPDGRRLVTGSASGEFTLWN 190 489999************999999997 PP == domain 2 score: 21.1 bits; conditional E-value: 4.5e-06 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvriW 37 ++l +H s+v+++++s++ awl++G+ g ++ W tr|F7A7C3|F7A7C3_CIOIN 198 TILQAHdSPVRAMSWSKNDAWLITGDNQGYIKYW 231 5789**888****************99*****99 PP == domain 3 score: 27.4 bits; conditional E-value: 4.5e-08 EEEEEEESSSS..EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGHss..vtslafspdgawlasGsdDgtvriWd 38 ++++ + +H++ +s++f p a +a++sdDgtvriWd tr|F7A7C3|F7A7C3_CIOIN 236 NNVKMYQAHKDqaCRSVCFGPTDAKFATASDDGTVRIWD 274 68899****66679************************9 PP == domain 4 score: 15.2 bits; conditional E-value: 0.00032 EEEEEEESS.SSEEEEEEETTSSEEEEEETT CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdD 31 q ++l+GH +v ++++p + +las+s+D tr|F7A7C3|F7A7C3_CIOIN 279 QEEHILKGHgADVKQVDWHPQKGLLASASKD 309 66799****888*****************88 PP == domain 5 score: 25.1 bits; conditional E-value: 2.4e-07 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 gq l t +H + v +++++++g+w++++s+D+ v+++d tr|F7A7C3|F7A7C3_CIOIN 322 GQSLATVHAHkGTVMDIKWNRNGNWFLTASRDHLVKLYD 360 57889999**555************************98 PP == domain 6 score: 7.3 bits; conditional E-value: 0.1 EEEEESS.SSEEEEEEETTSSE.EEEEETTSEEEEE CS WD40 4 lrtltGH.ssvtslafspdgaw.lasGsdDgtvriW 37 ++ ++GH + s+a++p + +asG+ g+++ W tr|F7A7C3|F7A7C3_CIOIN 368 VQYFRGHkKEAFSVAWHPIHEEmFASGGSEGSIMYW 403 56699**88899**888888884578977*****99 PP == domain 7 score: 20.4 bits; conditional E-value: 7.2e-06 EEEEE.SSSS.EEEEEEETTSSEEEEEETTSEEEEE CS WD40 4 lrtlt.GHss.vtslafspdgawlasGsdDgtvriW 37 +++l+ +H+s ++sla++p g+ l+sGs D++ ++W tr|F7A7C3|F7A7C3_CIOIN 411 IGSLEgAHDSlIWSLAWHPLGHILVSGSNDHSTKFW 446 567763566679************************ PP >> tr|F6Q9C5|F6Q9C5_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.1 0.7 0.00036 0.03 4 38 .] 57 100 .. 54 100 .. 0.90 2 ! 15.4 0.0 0.00028 0.024 3 37 .. 114 151 .. 112 151 .. 0.83 3 ! 21.6 0.8 3.1e-06 0.00026 5 38 .] 219 255 .. 215 255 .. 0.84 4 ! 17.3 0.2 7e-05 0.006 6 37 .. 291 324 .. 287 325 .. 0.84 5 ? 7.1 0.0 0.12 10 5 36 .. 385 418 .. 381 422 .. 0.72 6 ? 3.3 0.0 1.8 1.6e+02 10 37 .. 440 467 .. 433 468 .. 0.79 7 ! 11.6 0.0 0.0045 0.38 4 29 .. 552 578 .. 549 592 .. 0.83 8 ! 18.6 0.0 2.8e-05 0.0024 2 33 .. 597 629 .. 596 633 .. 0.88 9 ! 21.5 0.6 3.4e-06 0.00028 9 37 .. 655 684 .. 639 685 .. 0.81 Alignments for each domain: == domain 1 score: 15.1 bits; conditional E-value: 0.00036 EEEEESS.SSEEEEE....EETTSSE....EEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtsla....fspdgaw....lasGsdDgtvriWd 38 + tl H ++v +++ fs+dg + l+sGs D+t+ W+ tr|F6Q9C5|F6Q9C5_CIOIN 57 VSTLNHHrGPVGCVKwirrFSDDGILktpfLLSGSVDKTITCWK 100 5688889999*******************989********9995 PP == domain 2 score: 15.4 bits; conditional E-value: 0.00028 EEEEEESS.SSEEEEE..EETTSSEEEEEETTSEEEEE CS WD40 3 clrtltGH.ssvtsla..fspdgawlasGsdDgtvriW 37 l +l+GH + +t+++ + + ++++s++ D v+iW tr|F6Q9C5|F6Q9C5_CIOIN 114 ILAELKGHsGTITAMDgiVVGNRNLISSAGADSCVKIW 151 6789****555****8888888888988888******* PP == domain 3 score: 21.6 bits; conditional E-value: 3.1e-06 EEEESS.SSEEEEE.EETTSSEEE.EEETTSEEEEEE CS WD40 5 rtltGH.ssvtsla.fspdgawla.sGsdDgtvriWd 38 l+GH ++v++++ s++g++++ s+s Dg vr+W+ tr|F6Q9C5|F6Q9C5_CIOIN 219 VCLSGHeDWVRDVDfLSSSGDLILsSCSQDGFVRLWK 255 4589**888*****99999999763779********6 PP == domain 4 score: 17.3 bits; conditional E-value: 7e-05 EEESS.SSEEEEE.EETTSSEEEEEETTSEEEEE CS WD40 6 tltGH.ssvtsla.fspdgawlasGsdDgtvriW 37 +l+GH ++v+s++ ++ +++l+s+s D+tv +W tr|F6Q9C5|F6Q9C5_CIOIN 291 VLSGHeNWVYSVQwVHGTQPMLLSASIDKTVVVW 324 799*********66666666699*********** PP == domain 5 score: 7.1 bits; conditional E-value: 0.12 EEEESS.SSEEEEEEETTSSE.......EEEEETTSEEEE CS WD40 5 rtltGH.ssvtslafspdgaw.......lasGsdDgtvri 36 + tGH +v ++ +w l++ +dD+t r+ tr|F6Q9C5|F6Q9C5_CIOIN 385 VVVTGHsAPVLDI------SWeplhgryLLTTGDDQTTRV 418 5689**777****......666666668665566*99886 PP == domain 6 score: 3.3 bits; conditional E-value: 1.8 S.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 10 H.ssvtslafspdgawlasGsdDgtvriW 37 H ++t+l+ ++ +++ sG d + +r++ tr|F6Q9C5|F6Q9C5_CIOIN 440 HgYDITCLSMMHSLKFV-SGADEKVLRVF 467 5336****888888886.8*989999986 PP == domain 7 score: 11.6 bits; conditional E-value: 0.0045 EEEEESS.SSEEEEEEETTSSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGs 29 +r+l GH + ++a s+dg+++as+ tr|F6Q9C5|F6Q9C5_CIOIN 552 VRKLYGHvYEIFCVACSKDGNLIASAA 578 78999**7669************9875 PP == domain 8 score: 18.6 bits; conditional E-value: 2.8e-05 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgt 33 q++ tl GH vt + fsp+g++l+s s+D+t tr|F6Q9C5|F6Q9C5_CIOIN 597 QQVDTLHGHtLTVTQMEFSPNGNYLLSVSRDRT 629 678899***655**************99***99 PP == domain 9 score: 21.5 bits; conditional E-value: 3.4e-06 SSSS.EEEEEEETTSSEEEEEETTSEEEEE CS WD40 9 GHss.vtslafspdgawlasGsdDgtvriW 37 Hs ++s+++ +d++++++Gs+D++++iW tr|F6Q9C5|F6Q9C5_CIOIN 655 SHSRiIWSCSWAHDSKLFVTGSRDKKLMIW 684 354467************************ PP >> tr|F7AE45|F7AE45_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.8 0.1 0.00043 0.036 7 37 .. 7 36 .. 2 37 .. 0.82 2 ? 9.2 0.0 0.025 2.1 13 36 .. 56 79 .. 46 81 .. 0.79 3 ! 19.6 0.1 1.3e-05 0.0011 4 38 .] 90 126 .. 87 126 .. 0.80 4 ! 14.3 0.0 0.00064 0.054 4 38 .] 133 169 .. 130 169 .. 0.86 5 ! 13.9 0.5 0.00083 0.071 9 37 .. 184 227 .. 176 227 .. 0.72 6 ! 29.5 0.2 9.9e-09 8.4e-07 2 37 .. 237 273 .. 236 273 .. 0.94 7 ! 22.4 0.0 1.7e-06 0.00015 4 37 .. 281 315 .. 278 316 .. 0.84 Alignments for each domain: == domain 1 score: 14.8 bits; conditional E-value: 0.00043 EESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 7 ltGH.ssvtslafspdgawlasGsdDgtvriW 37 l GH + v+s+ + ++++++s D+t+r++ tr|F7AE45|F7AE45_CIOIN 7 LGGHtKEVNSC--TFSTQYFVTCSGDKTLRVY 36 67**999****..567777888877*****98 PP == domain 2 score: 9.2 bits; conditional E-value: 0.025 EEEEEEETTSSEEEEEETTSEEEE CS WD40 13 vtslafspdgawlasGsdDgtvri 36 v+ ++f+++g++las++ Dg+ ++ tr|F7AE45|F7AE45_CIOIN 56 VNFVKFDKSGSLLASACSDGKAHL 79 8999*********97755**9877 PP == domain 3 score: 19.6 bits; conditional E-value: 1.3e-05 EEEEESSSSE.EEEE..EETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGHssv.tsla..fspdgawlasGsdDgtvriWd 38 + +++ Hs+v t++ fs+ +++l++Gs Dg++ +Wd tr|F7AE45|F7AE45_CIOIN 90 VAVFR-HSDVnTAQVcaFSSQSNLLVTGSADGSIALWD 126 56666.88885444468********************9 PP == domain 4 score: 14.3 bits; conditional E-value: 0.00064 EEEEESS..SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH..ssvtslafspdgawlasGsdDgtvriWd 38 +r+ GH ++v++ af p ++l++Gs g +r+W+ tr|F7AE45|F7AE45_CIOIN 133 VRIKAGHpeGNVYAAAFTPCDHFLLTGSALGDIRMWN 169 566669*8555*************************8 PP == domain 5 score: 13.9 bits; conditional E-value: 0.00083 SS.SS.....EEEEE........EETTSSEEE.EEETTSEEEEE CS WD40 9 GH.ss.....vtsla........fspdgawla.sGsdDgtvriW 37 +H + vt++ +pd ++l+ s++ D++v++W tr|F7AE45|F7AE45_CIOIN 184 AHdEGisscgVTCIVfsptfhqsHNPDRSYLVaSSGQDNNVKMW 227 6752245567999998888888888888888625679******* PP == domain 6 score: 29.5 bits; conditional E-value: 9.9e-09 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 q+ +tl+GH ++v+s++fs dg+ +as s D+tvriW tr|F7AE45|F7AE45_CIOIN 237 QLFQTLSGHgGPVNSCDFSLDGSNIASVSFDKTVRIW 273 6789*****888**************9999******* PP == domain 7 score: 22.4 bits; conditional E-value: 1.7e-06 EEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEE CS WD40 4 lrtltGHss.vtslafspdgawlasGsdDgtvriW 37 +l+GHs vts+++s+dg++la+ ++D+ +W tr|F7AE45|F7AE45_CIOIN 281 EMVLDGHSTiVTSVSYSRDGKYLATTGYDKVTTVW 315 57899**5558*************8777**99999 PP >> tr|F7AW67|F7AW67_CIOIN guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 OS=Ciona intestinalis OX=771 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 22.1 0.1 2.1e-06 0.00018 4 38 .] 55 90 .. 52 90 .. 0.94 2 ! 11.7 0.1 0.0041 0.35 12 38 .] 106 132 .. 93 132 .. 0.85 3 ! 16.9 0.2 9.3e-05 0.0079 4 38 .] 143 177 .. 140 177 .. 0.90 4 ! 20.5 0.2 6.9e-06 0.00058 5 38 .] 185 219 .. 181 219 .. 0.89 5 ! 20.0 0.0 1e-05 0.00084 2 38 .] 224 261 .. 223 261 .. 0.87 6 ! 21.0 0.1 4.7e-06 0.00039 11 38 .] 278 305 .. 266 305 .. 0.84 7 ! 17.9 0.5 4.6e-05 0.0039 5 38 .] 313 347 .] 309 347 .] 0.90 Alignments for each domain: == domain 1 score: 22.1 bits; conditional E-value: 2.1e-06 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 rtl+GH ++++ + d++ ++s+s Dg++ +Wd tr|F7AW67|F7AW67_CIOIN 55 RRTLRGHlAKIYAMHWGTDSRHVVSASQDGKLILWD 90 689****999*************************9 PP == domain 2 score: 11.7 bits; conditional E-value: 0.0041 SEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 12 svtslafspdgawlasGsdDgtvriWd 38 +v +a+ p+g+++a+G+ D+ + +++ tr|F7AW67|F7AW67_CIOIN 106 WVMTCAYAPSGSFVACGGLDNICSVYN 132 488889*****************9997 PP == domain 3 score: 16.9 bits; conditional E-value: 9.3e-05 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 r+l GH + ++++f +d + ++s++ D t+ +Wd tr|F7AW67|F7AW67_CIOIN 143 SRELNGHtGYLSCCRFLDDTRIVTSSG-DMTCALWD 177 57899**666************99989.*******9 PP == domain 4 score: 20.5 bits; conditional E-value: 6.9e-06 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 + +tGH ++v sl++ +d++ ++sG D t ++Wd tr|F7AW67|F7AW67_CIOIN 185 TAFTGHtGDVMSLSVTDDKNTFISGACDATAKLWD 219 459***888****************77*******9 PP == domain 5 score: 20.0 bits; conditional E-value: 1e-05 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 c +t++GH s++++++ p++ + +GsdD t+r++d tr|F7AW67|F7AW67_CIOIN 224 MCRQTFSGHeSDINAVSMFPNNMAFGTGSDDATCRLFD 261 5899*****999****977777776699********98 PP == domain 6 score: 21.0 bits; conditional E-value: 4.7e-06 SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 11 ssvtslafspdgawlasGsdDgtvriWd 38 +++ts+afs++g+++++G dD ++ iWd tr|F7AW67|F7AW67_CIOIN 278 CGITSVAFSRSGRLFFAGYDDFNCNIWD 305 35*************************9 PP == domain 7 score: 17.9 bits; conditional E-value: 4.6e-05 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++l GH + v++l dg +a+Gs+D +++W+ tr|F7AW67|F7AW67_CIOIN 313 GVLAGHdNRVSCLGITVDGMAVATGSWDSFLKVWN 347 5788**888****99999999*************8 PP >> tr|F6TQ79|F6TQ79_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 GN=LOC100178079 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 12.8 0.3 0.0019 0.16 3 37 .. 319 354 .. 317 354 .. 0.89 2 ! 21.2 1.3 4.2e-06 0.00036 4 38 .] 362 397 .. 359 397 .. 0.89 3 ! 27.3 4.3 5.1e-08 4.3e-06 2 38 .] 402 439 .. 401 439 .. 0.93 4 ! 25.9 0.1 1.4e-07 1.2e-05 2 38 .] 444 481 .. 443 481 .. 0.94 5 ! 11.9 0.5 0.0036 0.31 3 38 .] 487 523 .. 485 523 .. 0.83 6 ! 13.5 0.0 0.0011 0.095 14 36 .. 541 563 .. 530 564 .. 0.89 7 ! 20.5 0.1 6.8e-06 0.00057 6 38 .] 573 606 .] 569 606 .] 0.88 Alignments for each domain: == domain 1 score: 12.8 bits; conditional E-value: 0.0019 EEEEEESSSS..EEEEEEETTSSEEEEEETTSEEEEE CS WD40 3 clrtltGHss..vtslafspdgawlasGsdDgtvriW 37 ++++++GH + ++s++ +p ++ ++ sdD+ ++W tr|F6TQ79|F6TQ79_CIOIN 319 QTGSIRGH-DlaISSVSLHPRKQIAVTTSDDHQWKMW 354 567899**.556************999999******9 PP == domain 2 score: 21.2 bits; conditional E-value: 4.2e-06 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 + t +GH +++++ +f+p+ga la++s D v++Wd tr|F6TQ79|F6TQ79_CIOIN 362 IMTGEGHtDWISDSDFHPSGAQLATSSGDACVKVWD 397 67889**777**************9978*******9 PP == domain 3 score: 27.3 bits; conditional E-value: 5.1e-08 EEEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 +c+ tl H++ v+++++++ g++las+s+D+t +iWd tr|F6TQ79|F6TQ79_CIOIN 402 SCVLTLPDHTHaVWGVSWHSCGDFLASCSMDNTSKIWD 439 69999*999556*************************9 PP == domain 4 score: 25.9 bits; conditional E-value: 1.4e-07 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +c tl+GH +sv+s++f + + l+++s D+t+ +Wd tr|F6TQ79|F6TQ79_CIOIN 444 RCRSTLRGHaDSVNSIQFLHFANTLLTASADKTLSLWD 481 7999*****988****************99*******9 PP == domain 5 score: 11.9 bits; conditional E-value: 0.0036 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 c +t+ GH sv+ f+ g+ + s++ gtv++Wd tr|F6TQ79|F6TQ79_CIOIN 487 CAQTFYGHlHSVNNAVFNLKGDTIGSCDSYGTVKFWD 523 77899***88896666999****867755*******9 PP == domain 6 score: 13.5 bits; conditional E-value: 0.0011 EEEEEETTSSEEEEEETTSEEEE CS WD40 14 tslafspdgawlasGsdDgtvri 36 + +af+p+g++la +s Dgt+++ tr|F6TQ79|F6TQ79_CIOIN 541 NRVAFDPSGHLLAVASNDGTIKM 563 789**********9999****96 PP == domain 7 score: 20.5 bits; conditional E-value: 6.8e-06 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 6 tltGH.ssvtslafspdgawlasGsdDgtvriWd 38 l GH + v ++ f+ g++++sG+ Dg+ r+W+ tr|F6TQ79|F6TQ79_CIOIN 573 MLAGHdDAVQAVTFDIGGQFMLSGGSDGSMRVWS 606 578**666****************88*******5 PP >> tr|F6W8G0|F6W8G0_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.4 0.3 4.7e-08 4e-06 2 37 .. 204 241 .. 203 242 .. 0.94 2 ! 23.5 0.0 8e-07 6.8e-05 2 38 .] 248 285 .. 247 285 .. 0.93 3 ? 9.0 0.0 0.03 2.5 2 38 .] 290 329 .. 289 329 .. 0.81 4 ! 16.2 0.0 0.00016 0.013 4 37 .. 336 370 .. 333 371 .. 0.83 5 ? 5.3 0.0 0.45 38 15 38 .] 391 414 .. 383 414 .. 0.84 6 ! 21.7 0.0 2.9e-06 0.00024 5 38 .] 425 461 .. 421 461 .. 0.83 7 ! 16.7 1.3 0.00011 0.0093 6 38 .] 470 504 .] 462 504 .] 0.75 Alignments for each domain: == domain 1 score: 27.4 bits; conditional E-value: 4.7e-08 EEEEEEESS.SSEEEEE.EETTSSEEEEEETTSEEEEE CS WD40 2 qclrtltGH.ssvtsla.fspdgawlasGsdDgtvriW 37 ++++t++GH + v+s++ f+++g++l+s+s+D++v++W tr|F6W8G0|F6W8G0_CIOIN 204 RLIHTWSGHtKAVSSIKlFPKSGHLLLSSSMDCKVKLW 241 579******999************************** PP == domain 2 score: 23.5 bits; conditional E-value: 8e-07 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++lrt++GH + v+ +f+ dg+ ++s+ +D+ +++Wd tr|F6W8G0|F6W8G0_CIOIN 248 RLLRTFSGHgKAVRESSFNNDGSKFLSAAYDRYIKLWD 285 689******999*99999******999989*******9 PP == domain 3 score: 9.0 bits; conditional E-value: 0.03 EEEEEEESSSSE.EEEEEETTSSE...EEEE.ETTSEEEEEE CS WD40 2 qclrtltGHssv.tslafspdgaw...lasG.sdDgtvriWd 38 qc+ ++ + + ++++f+pd + +++G s D+++ Wd tr|F6W8G0|F6W8G0_CIOIN 290 QCISRFS-NKKIpYCVKFNPDENKqhlFVAGlS-DKKIVTWD 329 6667665.445889***********98678988.****9998 PP == domain 4 score: 16.2 bits; conditional E-value: 0.00016 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 +++++ H + v+ + f ++++ ++s sdD+++r+W tr|F6W8G0|F6W8G0_CIOIN 336 VQEYDRHlGAVNTITFVDNNTKFVSTSDDKSLRVW 370 6778889988999998888888888899******* PP == domain 5 score: 5.3 bits; conditional E-value: 0.45 EEEEETTSSEEEEE..ETTSEEEEEE CS WD40 15 slafspdgawlasG..sdDgtvriWd 38 s+ sp+ +wl G s D+ ++i+d tr|F6W8G0|F6W8G0_CIOIN 391 SVTLSPNEKWL--GcqSLDNQIMIFD 414 5667******8..63667******98 PP == domain 6 score: 21.7 bits; conditional E-value: 2.9e-06 EEEESS..SS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 5 rtltGH..ss.vtslafspdgawlasGsdDgtvriWd 38 ++++GH + + + fspd +++asG+ Dg+v iWd tr|F6W8G0|F6W8G0_CIOIN 425 KIFKGHmvAGyACQMTFSPDMSYVASGDGDGKVFIWD 461 7899**7633467777***********66*******9 PP == domain 7 score: 16.7 bits; conditional E-value: 0.00011 EEESSSS..EEEEEEETTSSE.EEEEETTSEEEEEE CS WD40 6 tltGHss..vtslafspdgaw.lasGsdDgtvriWd 38 ++ +H s + ++ ++p+ + l+++++D +++Wd tr|F6W8G0|F6W8G0_CIOIN 470 KFQAHESvcIGCV-WHPHETSkLITCGWDSQIKLWD 504 4679966346677.6666666689***********9 PP >> tr|F6TFD0|F6TFD0_CIOIN target of rapamycin complex subunit lst8 OS=Ciona intestinalis OX=7719 GN=LOC100186285 PE=4 S # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.5 0.1 6.2e-05 0.0052 16 37 .. 3 24 .. 1 25 [. 0.92 2 ! 13.5 0.0 0.0011 0.094 2 38 .] 30 66 .. 29 66 .. 0.88 3 ! 25.0 0.0 2.7e-07 2.3e-05 3 38 .] 74 110 .. 72 110 .. 0.89 4 ? 8.4 0.0 0.046 3.9 2 38 .] 117 153 .. 116 153 .. 0.90 5 ? 7.2 0.1 0.11 9.2 13 38 .] 170 195 .. 163 195 .. 0.88 6 ! 19.4 0.0 1.5e-05 0.0013 6 37 .. 213 245 .. 209 246 .. 0.81 7 ! 16.0 0.5 0.00018 0.015 10 38 .] 268 296 .. 251 296 .. 0.89 8 ? 7.1 0.0 0.12 10 4 21 .. 303 321 .. 300 322 .] 0.84 Alignments for each domain: == domain 1 score: 17.5 bits; conditional E-value: 6.2e-05 EEEETTSSEEEEEETTSEEEEE CS WD40 16 lafspdgawlasGsdDgtvriW 37 ++ s+d+ la+Gs+D+t+r+W tr|F6TFD0|F6TFD0_CIOIN 3 VDGSSDSIILATGSYDHTIRFW 24 78899***************** PP == domain 2 score: 13.5 bits; conditional E-value: 0.0011 EEEEEEESS.SS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ss.vtslafspdgawlasGsdDgtvriWd 38 clrt H +s v++++ pd +la+++ ++vr++d tr|F6TFD0|F6TFD0_CIOIN 30 VCLRTV-QHpDSqVNAMKITPDRGLLAAAG-YQHVRMYD 66 699998.598446***************9*.******98 PP == domain 3 score: 25.0 bits; conditional E-value: 2.7e-07 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++r ++G ++vts+ f++dg+w+++G++D+ riWd tr|F6TFD0|F6TFD0_CIOIN 74 PIRCYDGLgKNVTSVGFQQDGKWMFTGGEDCMARIWD 110 67777777677*************************9 PP == domain 4 score: 8.4 bits; conditional E-value: 0.046 EEEEEEESSSSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGHssvtslafspdgawlasGsdDgtvriWd 38 qc r + ++ts + +p++ l+ ++ g + iWd tr|F6TFD0|F6TFD0_CIOIN 117 QCNRMFQVNAPITSACLHPNQGELIVADQSGCINIWD 153 78888888888*****99999999999*********9 PP == domain 5 score: 7.2 bits; conditional E-value: 0.11 EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriWd 38 +++++ + d ++la+ g++ +W+ tr|F6TFD0|F6TFD0_CIOIN 170 INCIDIDADASYLAAVNTEGSCFVWS 195 8************98866*******5 PP == domain 6 score: 19.4 bits; conditional E-value: 1.5e-05 EEESSSS.EEEEEEETTSSEEEEEETTSEEEEE CS WD40 6 tltGHss.vtslafspdgawlasGsdDgtvriW 37 +l++Hs ++fspd+ +la+ s D++v++W tr|F6TFD0|F6TFD0_CIOIN 213 KLKAHSRyALKCKFSPDSVLLATTSADQSVKVW 245 6778844544788*********9999******* PP == domain 7 score: 16.0 bits; conditional E-value: 0.00018 SSSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 10 HssvtslafspdgawlasGsdDgtvriWd 38 H++ +++ fs d+++++++s D+ r+W+ tr|F6TFD0|F6TFD0_CIOIN 268 HGWMWDCEFSADSQFIITASSDCVARLWN 296 55568999********99988*******8 PP == domain 8 score: 7.1 bits; conditional E-value: 0.12 EEEEESS.SSEEEEEEETT CS WD40 4 lrtltGH.ssvtslafspd 21 r+++GH + v slafs++ tr|F6TFD0|F6TFD0_CIOIN 303 KREYSGHsKAVVSLAFSDS 321 589****88899***9976 PP >> tr|F6SML9|F6SML9_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 GN=LOC100183358 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.3 0.0 0.00031 0.026 8 36 .. 105 134 .. 98 136 .. 0.77 2 ! 28.0 0.0 3.1e-08 2.6e-06 4 38 .] 169 204 .. 167 204 .. 0.94 3 ? 4.3 0.0 0.94 80 13 38 .] 223 248 .. 214 248 .. 0.87 4 ! 26.8 0.1 6.9e-08 5.8e-06 9 38 .] 263 293 .. 252 293 .. 0.85 5 ! 23.3 0.2 8.9e-07 7.5e-05 3 38 .] 299 337 .. 297 337 .. 0.84 6 ? 2.4 0.0 3.6 3e+02 9 37 .. 399 428 .. 390 428 .. 0.67 Alignments for each domain: == domain 1 score: 15.3 bits; conditional E-value: 0.00031 ESSSSE.EEEEEETTSSEEEEEETTSEEEE CS WD40 8 tGHssv.tslafspdgawlasGsdDgtvri 36 t+H+ ++ fs++g+++a+Gs D ++++ tr|F6SML9|F6SML9_CIOIN 105 TAHKAPtRAATFSKNGQYIATGSVDTSIKV 134 56744314555*****************98 PP == domain 2 score: 28.0 bits; conditional E-value: 3.1e-08 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +rtl H + +t++ f+p ++ l+sGs+D tv+++d tr|F6SML9|F6SML9_CIOIN 169 IRTLYDHvDEITCIEFHPTQQILVSGSRDYTVKVFD 204 689999*888************************98 PP == domain 3 score: 4.3 bits; conditional E-value: 0.94 EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriWd 38 v la +p g++++ G+ + +r++d tr|F6SML9|F6SML9_CIOIN 223 VKTLAMHPAGDFILVGTHHPVIRLYD 248 667889*******99*88*****998 PP == domain 4 score: 26.8 bits; conditional E-value: 6.9e-08 SS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 9 GH.ssvtslafspdgawlasGsdDgtvriWd 38 H ++++++++++ g++ asGs+Dg ++iWd tr|F6SML9|F6SML9_CIOIN 263 QHkGPINCISYNQTGNYYASGSKDGEIKIWD 293 68666*************************9 PP == domain 5 score: 23.3 bits; conditional E-value: 8.9e-07 EEEEEE.SS..SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtlt.GH..ssvtslafspdgawlasGsdDgtvriWd 38 c+ ++ +H ++v+s+ fs++g++l+++++D r+W+ tr|F6SML9|F6SML9_CIOIN 299 CIMKFPdAHdgDDVCSVVFSRNGKYLLTSGKDSVARLWS 337 66666449*8444*************************5 PP == domain 6 score: 2.4 bits; conditional E-value: 3.6 SS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 9 GH.ssvtslafspdgawlasGsdDgtvriW 37 GH ++ + +a sp a ++++s+D r+W tr|F6SML9|F6SML9_CIOIN 399 GHqGPARRIAHSPTIAAFITSSEDFRARFW 428 67555566665555555668999*****99 PP >> tr|F6W1C5|F6W1C5_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 GN=LOC100187342 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.2 0.1 9.6e-07 8.1e-05 6 38 .] 34 67 .. 29 67 .. 0.80 2 ! 21.0 0.1 5e-06 0.00042 4 38 .] 74 109 .. 71 109 .. 0.89 3 ! 28.9 0.1 1.5e-08 1.3e-06 1 38 [] 113 151 .. 113 151 .. 0.94 4 ? 3.1 0.0 2.1 1.8e+02 13 36 .. 170 191 .. 159 193 .. 0.70 5 ? 9.8 0.2 0.016 1.4 10 36 .. 200 231 .. 194 233 .. 0.75 6 ! 19.4 0.0 1.6e-05 0.0013 3 38 .] 239 277 .. 237 277 .. 0.79 Alignments for each domain: == domain 1 score: 23.2 bits; conditional E-value: 9.6e-07 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 6 tltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++ + v++++f+ dg++ ++++ D+++++W+ tr|F6W1C5|F6W1C5_CIOIN 34 FIDCNqGAVRAVRFNGDGNYCLTCGNDKSIKLWN 67 34455445************999999*******8 PP == domain 2 score: 21.0 bits; conditional E-value: 5e-06 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++++tGH +v + a s d+ +as++ D++v+ Wd tr|F6W1C5|F6W1C5_CIOIN 74 IKKYTGHgYDVLDAASSNDNCQIASCGSDKSVMYWD 109 789****666**************8877*******9 PP == domain 3 score: 28.9 bits; conditional E-value: 1.5e-08 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 gq +r ++GH + v++++f+ +++ ++sGs D ++r Wd tr|F6W1C5|F6W1C5_CIOIN 113 GQIIRRFRGHaGRVNCVQFNEESTVILSGSVDSSIRAWD 151 678999****777*************************9 PP == domain 4 score: 3.1 bits; conditional E-value: 2.1 EEEEEEETTSSEEEEEETTSEEEE CS WD40 13 vtslafspdgawlasGsdDgtvri 36 +++l++s++ +sGs Dg++r tr|F6W1C5|F6W1C5_CIOIN 170 ISALQVSDHEI--LSGSIDGKIRR 191 55554444444..49*******95 PP == domain 5 score: 9.8 bits; conditional E-value: 0.016 SSS.....EEEEEEETTSSEEEEEETTSEEEE CS WD40 10 Hss.....vtslafspdgawlasGsdDgtvri 36 Hs+ +ts +f +dg+ ++++ D+t+r+ tr|F6W1C5|F6W1C5_CIOIN 200 HSDnigsaITSTCFTKDGQCTLTSTHDNTIRL 231 633456679***********556655*****8 PP == domain 6 score: 19.4 bits; conditional E-value: 1.6e-05 EEEEEESS.SS...EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ss...vtslafspdgawlasGsdDgtvriWd 38 l+++ GH + + + ++ + ++sGs+Dg++++Wd tr|F6W1C5|F6W1C5_CIOIN 239 MLGEYMGHkNAkymIECA-LNRKDDHVISGSEDGHIYMWD 277 678899**6559999444.4777777789**********9 PP >> tr|F6WHS8|F6WHS8_CIOIN Protein HIRA OS=Ciona intestinalis OX=7719 PE=3 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.0 0.3 0.014 1.2 9 38 .] 10 46 .. 4 46 .. 0.80 2 ! 25.7 0.2 1.5e-07 1.3e-05 7 37 .. 68 99 .. 63 100 .. 0.89 3 ! 38.1 3.8 1.9e-11 1.6e-09 1 38 [] 124 162 .. 124 162 .. 0.97 4 ! 24.5 0.3 3.7e-07 3.1e-05 5 38 .] 171 205 .. 168 205 .. 0.88 5 ? 6.8 0.1 0.15 13 6 29 .. 225 244 .. 217 252 .. 0.82 6 ? 6.4 0.1 0.2 17 7 37 .. 267 311 .. 261 311 .. 0.65 7 ! 11.1 0.3 0.0064 0.54 11 34 .. 328 351 .. 315 352 .. 0.84 8 ? 2.9 1.8 2.5 2.1e+02 9 36 .. 716 764 .. 698 764 .. 0.62 Alignments for each domain: == domain 1 score: 10.0 bits; conditional E-value: 0.014 SS..SSEEEEEEETTSSEEEEEET.....TSEEEEEE CS WD40 9 GH..ssvtslafspdgawlasGsd.....DgtvriWd 38 +H +++ s++ +pd + +a+G+ g+v iW+ tr|F6WHS8|F6WHS8_CIOIN 10 THddKPIFSIDIHPDESRFATGGQgdggsSGKVIIWN 46 797667***************753335559**99998 PP == domain 2 score: 25.7 bits; conditional E-value: 1.5e-07 EESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 7 ltGH.ssvtslafspdgawlasGsdDgtvriW 37 + H +v+s+++s +g++lasG+dD+ ++iW tr|F6WHS8|F6WHS8_CIOIN 68 MDNHlACVNSVRWSCNGRYLASGGDDRLIMIW 99 5679889************************* PP == domain 3 score: 38.1 bits; conditional E-value: 1.9e-11 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++c++tl+GH ++v +la+sp ++wlas+s D++v iWd tr|F6WHS8|F6WHS8_CIOIN 124 WRCTHTLKGHtGDVLDLAWSPGNQWLASCSIDNSVVIWD 162 68********888*************************9 PP == domain 4 score: 24.5 bits; conditional E-value: 3.7e-07 EEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 5 rtltGHss.vtslafspdgawlasGsdDgtvriWd 38 ++l+GH+s v ++ ++p g+++as sdD+tv++W+ tr|F6WHS8|F6WHS8_CIOIN 171 TVLKGHTSlVKGVTWDPIGSYVASQSDDKTVKVWK 205 679***6669***********98669********6 PP == domain 5 score: 6.8 bits; conditional E-value: 0.15 EEESSSSEEEEEEETTSSEEEEEE CS WD40 6 tltGHssvtslafspdgawlasGs 29 t +H v l++spdg l+s++ tr|F6WHS8|F6WHS8_CIOIN 225 T--TH--VLRLSWSPDGGILVSAH 244 2..66..**************986 PP == domain 6 score: 6.4 bits; conditional E-value: 0.2 EESS.SSEEEEE..............EETTSSE....EEEEETTSEEEEE CS WD40 7 ltGH.ssvtsla..............fspdgaw....lasGsdDgtvriW 37 + GH + +t+ + a Gs+D+++ +W tr|F6WHS8|F6WHS8_CIOIN 267 FVGHrKAITCTRfnscmfsklktegeS-----KpytcCAVGSRDRSLSVW 311 779999999886555554554444433.....04443466********** PP == domain 7 score: 11.1 bits; conditional E-value: 0.0064 SSEEEEEEETTSSEEEEEETTSEE CS WD40 11 ssvtslafspdgawlasGsdDgtv 34 +sv ++++s +g l+++s+Dgtv tr|F6WHS8|F6WHS8_CIOIN 328 NSVMDISWSFSGYSLLCCSWDGTV 351 4599*******************8 PP == domain 8 score: 2.9 bits; conditional E-value: 2.5 SSSSEEEEE....EETTSSE.................EEEEETTSEEEE CS WD40 9 GHssvtsla....fspdgaw.................lasGsdDgtvri 36 H+++ts++ +++d w ++ G+ D+tv + tr|F6WHS8|F6WHS8_CIOIN 716 HHQCITSFKiiccVDKDEVWtsvmsapatavslsrliVCIGCSDHTVCV 764 3344555544444588888877766666666666653333544999975 PP >> tr|F6QHS0|F6QHS0_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.6 0.3 6.3e-06 0.00054 7 38 .] 160 190 .. 155 190 .. 0.88 2 ! 22.7 0.2 1.4e-06 0.00012 1 38 [] 194 230 .. 194 230 .. 0.83 3 ! 19.0 0.1 2e-05 0.0017 2 37 .. 235 272 .. 234 272 .. 0.73 4 ! 19.5 0.3 1.4e-05 0.0012 1 38 [] 277 313 .. 277 313 .. 0.85 5 ! 21.4 1.1 3.6e-06 0.00031 2 37 .. 318 352 .. 317 352 .. 0.89 6 ! 16.0 0.2 0.00018 0.015 3 35 .. 359 390 .. 357 390 .. 0.89 Alignments for each domain: == domain 1 score: 20.6 bits; conditional E-value: 6.3e-06 EESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 7 ltGHss.vtslafspdgawlasGsdDgtvriWd 38 +GH++ ++++ + g+ +asGsdD+ v +Wd tr|F6QHS0|F6QHS0_CIOIN 160 MRGHKDrISCV--DCAGNIVASGSDDHLVVLWD 190 58**666****..888999*************9 PP == domain 2 score: 22.7 bits; conditional E-value: 1.4e-06 TEEEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 1 gqclrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 g++l++++ H++ vt++ +++l+sG+ Dg +ri++ tr|F6QHS0|F6QHS0_CIOIN 194 GDKLHVFSHHNDaVTCV--KIKNNLLLSGCADGVIRIYN 230 5789****99666****..44667799**99******98 PP == domain 3 score: 19.0 bits; conditional E-value: 2e-05 EEEEE.EESS..SS.EEEEEEETTSSEEEEEETTSEEEEE CS WD40 2 qclrt.ltGH..ss.vtslafspdgawlasGsdDgtvriW 37 +cl+ l+ H +s v+ l+f+ +a sG+dD+tvriW tr|F6QHS0|F6QHS0_CIOIN 235 KCLGQlLDEHqaKSgVRFLCFDGTKAI--SGHDDKTVRIW 272 677774578977446988866555555..9********** PP == domain 4 score: 19.5 bits; conditional E-value: 1.4e-05 TEEEEEEESS.SS....EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 1 gqclrtltGH.ss....vtslafspdgawlasGsdDgtvriWd 38 g+cl++ tGH ++ v ++ g++ ++ s+D tv++Wd tr|F6QHS0|F6QHS0_CIOIN 277 GRCLYVMTGHtDDiasmV-CF-----GKYAVTTSWDETVKVWD 313 68********77745444.77.....999999**********9 PP == domain 5 score: 21.4 bits; conditional E-value: 3.6e-06 EEEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEE CS WD40 2 qclrtltGHss.vtslafspdgawlasGsdDgtvriW 37 c +tl GH+ v++ + + +++++G+ D+ v++W tr|F6QHS0|F6QHS0_CIOIN 318 VCAHTLIGHTEvVHCA--HANDQYVVTGGGDNVVKVW 352 699******7756999..**********88******* PP == domain 6 score: 16.0 bits; conditional E-value: 0.00018 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvr 35 c +tl GH ++v+++ + +asGs D +vr tr|F6QHS0|F6QHS0_CIOIN 359 CSQTLVGHtDDVYCV--GFNAEIIASGSADSSVR 390 899*****888****..778888*********98 PP >> tr|F6UHI7|F6UHI7_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 GN=LOC100183873 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.1 0.1 1.9e-05 0.0016 4 38 .] 60 96 .. 58 96 .. 0.87 2 ! 33.4 0.2 6e-10 5.1e-08 1 38 [] 100 138 .. 100 138 .. 0.94 3 ? 9.2 0.0 0.026 2.2 3 38 .] 188 225 .. 186 225 .. 0.77 4 ! 22.0 0.0 2.3e-06 0.00019 7 37 .. 278 309 .. 273 309 .. 0.86 5 ! 18.6 0.0 2.8e-05 0.0023 9 38 .] 315 354 .. 311 354 .. 0.79 Alignments for each domain: == domain 1 score: 19.1 bits; conditional E-value: 1.9e-05 EEEEESS.SSEEEEE.EETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtsla.fspdgawlasGsdDgtvriWd 38 l +l+GH ++v++l+ + ++l+sGs Dg +r W+ tr|F6UHI7|F6UHI7_CIOIN 60 LASLDGHrDGVCCLCkHRKRLSYLFSGSCDGEIRQWN 96 6789***999****98666667799**99*******8 PP == domain 2 score: 33.4 bits; conditional E-value: 6e-10 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +qc+rtl GH ++v++la spdg+ ++s +dD+tv+ W+ tr|F6UHI7|F6UHI7_CIOIN 100 RQCIRTLQGHtGFVRGLACSPDGKRFISVGDDKTVKHWN 138 59********888*************99999*******8 PP == domain 3 score: 9.2 bits; conditional E-value: 0.026 EEEEEESS.SSEEEEEEETTSSEEEEE..ETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasG..sdDgtvriWd 38 ++r+++ +s+ s++f+p + l+ + s D+++r++d tr|F6UHI7|F6UHI7_CIOIN 188 PVRVYKWGmDSIQSVKFNPVETNLCIStvS-DRSIRLYD 225 677777444779****99999998744348.******98 PP == domain 4 score: 22.0 bits; conditional E-value: 2.3e-06 EESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 7 ltGH.ssvtslafspdgawlasGsdDgtvriW 37 t H + v ++++sp g+ l+sGs+D+t+ri+ tr|F6UHI7|F6UHI7_CIOIN 278 HTDHtDAVLDVDYSPTGRELVSGSYDRTIRIF 309 3478555***********************96 PP == domain 5 score: 18.6 bits; conditional E-value: 2.8e-05 SSSS..........EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 9 GHss..........vtslafspdgawlasGsdDgtvriWd 38 GHs v +++s d+++++sGsd ++r+W+ tr|F6UHI7|F6UHI7_CIOIN 315 GHSRevyhtkrmqrVFTVKWSADNRYILSGSDETNIRMWK 354 6633545555566788999********************6 PP >> tr|F6Z465|F6Z465_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.4 0.3 2.3e-08 1.9e-06 7 38 .] 164 195 .. 157 195 .. 0.85 2 ! 27.0 0.2 6.2e-08 5.3e-06 1 38 [] 199 235 .. 199 235 .. 0.84 3 ! 22.2 0.6 2e-06 0.00017 3 38 .] 241 275 .. 239 275 .. 0.84 4 ! 24.9 0.1 2.9e-07 2.4e-05 1 38 [] 279 315 .. 279 315 .. 0.94 5 ? 9.0 0.1 0.03 2.6 2 16 .. 320 335 .. 319 336 .] 0.91 Alignments for each domain: == domain 1 score: 28.4 bits; conditional E-value: 2.3e-08 EESS.SS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 7 ltGH.ss.vtslafspdgawlasGsdDgtvriWd 38 l+GH ++ +t+l + +g+ ++sGsdD+t+++W+ tr|F6Z465|F6Z465_CIOIN 164 LKGHdDHvITCL--QFNGSRIVSGSDDNTLKVWS 195 79**66677***..779999*************5 PP == domain 2 score: 27.0 bits; conditional E-value: 6.2e-08 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 g+clrtltGH ++v++ + +++++sGs D+t++iW+ tr|F6Z465|F6Z465_CIOIN 199 GKCLRTLTGHtGGVWAS--QMRKNLIISGSTDRTLKIWN 235 79********888*844..44666699***********8 PP == domain 3 score: 22.2 bits; conditional E-value: 2e-06 EEEEEESS.SSEEEEEEETTSSE....EEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgaw....lasGsdDgtvriWd 38 c++tl GH s v++l a+ ++sGs+D t+r W+ tr|F6Z465|F6Z465_CIOIN 241 CVHTLYGHtSTVRCL------ALhdniVVSGSRDATLRAWN 275 9*******777****......55555478***********8 PP == domain 4 score: 24.9 bits; conditional E-value: 2.9e-07 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 g+c++ l GH v+++ + dg ++sG +D v++Wd tr|F6Z465|F6Z465_CIOIN 279 GECTHCLVGHmAAVRCV--CYDGERVVSGAYDYMVKVWD 315 68********999****..779999****99*******9 PP == domain 5 score: 9.0 bits; conditional E-value: 0.03 EEEEEEESS.SSEEEE CS WD40 2 qclrtltGH.ssvtsl 16 +cl+tl GH + v+sl tr|F6Z465|F6Z465_CIOIN 320 ECLHTLQGHtNRVYSL 335 8********888*999 PP >> tr|F7BQ53|F7BQ53_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 10.6 0.0 0.0096 0.81 5 38 .] 74 108 .. 70 108 .. 0.82 2 ! 27.6 0.0 4e-08 3.4e-06 3 38 .] 114 150 .. 112 150 .. 0.82 3 ! 15.3 0.0 0.0003 0.026 2 38 .] 155 193 .. 154 193 .. 0.74 4 ! 14.7 0.2 0.00047 0.04 9 38 .] 204 233 .. 197 233 .. 0.89 5 ! 26.0 0.3 1.2e-07 1e-05 1 38 [] 238 276 .. 238 276 .. 0.94 6 ? 5.3 0.0 0.43 36 12 35 .. 291 314 .. 280 315 .. 0.81 Alignments for each domain: == domain 1 score: 10.6 bits; conditional E-value: 0.0096 EEEE.SSSSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 5 rtlt.GHssvtslafspdgawlasGsdDgtvriWd 38 +t++ H+ ++ +f +dg++l++G +D vr++d tr|F7BQ53|F7BQ53_CIOIN 74 KTFSrFHNTAYGASFRSDGKLLVAGNEDTQVRLFD 108 55543676678889***********9*******98 PP == domain 2 score: 27.6 bits; conditional E-value: 4e-08 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +lr+++GH +v+ +f+ +++ l+s+sdD+tvr+Wd tr|F7BQ53|F7BQ53_CIOIN 114 PLRIFKGHsRPVHVTKFCNNKQQLFSASDDKTVRVWD 150 89******54464445799999999***********9 PP == domain 3 score: 15.3 bits; conditional E-value: 0.0003 EEEEEEESS.SSE.EEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssv.tslafspdgawlasGsdDgtvriWd 38 q+l ++ GH + v +++ + + +++G +D+tvr++d tr|F7BQ53|F7BQ53_CIOIN 155 QTLNEFCGHeDYVrCGCISTASENTIVTGAYDHTVRMFD 193 7788999**6669644445555555679*99******98 PP == domain 4 score: 14.7 bits; conditional E-value: 0.00047 SS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 9 GH.ssvtslafspdgawlasGsdDgtvriWd 38 H ++v s+ p+g+ ++s++ +++++Wd tr|F7BQ53|F7BQ53_CIOIN 204 NHgCPVESVLLFPSGSIILSAG-GHSIKVWD 233 69788*****************.*******9 PP == domain 5 score: 26.0 bits; conditional E-value: 1.2e-07 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 g++l+t + H + +t++ f++d + l+sGs D++v+i+d tr|F7BQ53|F7BQ53_CIOIN 238 GKLLTTVSNHhKTITCMTFNHDCTRLLSGSLDRHVKIYD 276 5789999999899*************************8 PP == domain 6 score: 5.3 bits; conditional E-value: 0.43 SEEEEEEETTSSEEEEEETTSEEE CS WD40 12 svtslafspdgawlasGsdDgtvr 35 s+ s+a+sp+ l+ G+ D+ + tr|F7BQ53|F7BQ53_CIOIN 291 SILSMAVSPNDETLVVGMADKMLS 314 4999*************99*9876 PP >> tr|F7A3E4|F7A3E4_CIOIN zinc finger protein isoform X1 OS=Ciona intestinalis OX=7719 GN=zf(traf/ring)-5 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 29.6 1.7 9e-09 7.6e-07 2 38 .] 414 449 .. 413 449 .. 0.87 2 ! 25.8 0.1 1.5e-07 1.3e-05 2 38 .] 455 490 .. 454 490 .. 0.86 3 ? 5.5 0.0 0.38 32 6 37 .. 499 528 .. 495 529 .. 0.73 4 ! 10.5 0.0 0.0099 0.84 20 38 .] 553 570 .. 538 570 .. 0.79 5 ? 8.3 0.9 0.051 4.4 3 38 .] 576 610 .. 574 610 .. 0.79 6 ! 17.4 0.0 6.7e-05 0.0057 3 38 .] 616 654 .. 614 654 .. 0.88 7 ! 13.0 0.0 0.0016 0.14 3 37 .. 660 693 .. 658 694 .] 0.89 Alignments for each domain: == domain 1 score: 29.6 bits; conditional E-value: 9e-09 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +c +t+ GH ++v++l + +g++l+sGs D+ +++Wd tr|F7A3E4|F7A3E4_CIOIN 414 KCKGTFVGHtGPVWCL--CVHGDYLFSGSSDKQIKVWD 449 899******888****..557777779*99*******9 PP == domain 2 score: 25.8 bits; conditional E-value: 1.5e-07 EEEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 +c++tl+GH++ v +l +g+ l+sGs D+t++iW+ tr|F7A3E4|F7A3E4_CIOIN 455 KCQKTLEGHGGiVLAL--TAHGDKLFSGSADCTIKIWS 490 8********6646888..88888888***********5 PP == domain 3 score: 5.5 bits; conditional E-value: 0.38 EEESS.SSEE...EEEEETTSSEEEEEETTSEEEEE CS WD40 6 tltGH.ssvt...slafspdgawlasGsdDgtvriW 37 ++ +H ++v+ ++ +++l+sGs +++++W tr|F7A3E4|F7A3E4_CIOIN 499 SIAAHeNPVCtlvCI-----NNMLFSGS-LKSIKVW 528 556899885323377.....666899**.******* PP == domain 4 score: 10.5 bits; conditional E-value: 0.0099 TTSSEEEEEETTSEEEEEE CS WD40 20 pdgawlasGsdDgtvriWd 38 +++l sGs +t++iWd tr|F7A3E4|F7A3E4_CIOIN 553 AQHDYLYSGS-YQTIKIWD 570 4568899***.*******9 PP == domain 5 score: 8.3 bits; conditional E-value: 0.051 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 c+++l + +sv+s+a+ ++ +++G++ +++++Wd tr|F7A3E4|F7A3E4_CIOIN 576 CVHVLQTSgGSVYSIAVT--NHHILCGTYENSIHVWD 610 999999887779999554..444568*99*******9 PP == domain 6 score: 17.4 bits; conditional E-value: 6.7e-05 EEEEEESS.SSEEEEE..EETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtsla..fspdgawlasGsdDgtvriWd 38 ++ ltGH + v++la p+++ ++s+s+D+++r+W+ tr|F7A3E4|F7A3E4_CIOIN 616 PVAQLTGHvGIVYALAvlSTPEQTKVFSASYDRSLRVWS 654 77889***6668999999999999999***********5 PP == domain 7 score: 13.0 bits; conditional E-value: 0.0016 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 c++tl H +sv +la+s+ + sG+ D tv++W tr|F7A3E4|F7A3E4_CIOIN 660 CTQTLIRHqGSVVALAVSRGRVF--SGGVDFTVKVW 693 8899999*88899**98888888..8********** PP >> tr|F6RBK2|F6RBK2_CIOIN Ribosome biogenesis protein WDR12 homolog OS=Ciona intestinalis OX=7719 PE=3 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.5 0.1 0.042 3.6 13 38 .] 104 127 .. 93 127 .. 0.73 2 ? 5.8 0.0 0.3 26 6 37 .. 136 175 .. 131 176 .. 0.72 3 ! 24.3 0.7 4.3e-07 3.7e-05 4 38 .] 187 222 .. 184 222 .. 0.90 4 ! 26.3 0.7 1e-07 8.8e-06 6 38 .] 256 288 .. 251 288 .. 0.81 5 ! 18.2 0.1 3.7e-05 0.0031 10 38 .] 301 329 .. 293 329 .. 0.84 6 ! 19.8 3.4 1.1e-05 0.00097 7 38 .] 342 375 .. 337 375 .. 0.92 7 ? 8.4 0.0 0.048 4 3 34 .. 382 413 .. 380 414 .. 0.83 Alignments for each domain: == domain 1 score: 8.5 bits; conditional E-value: 0.042 EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriWd 38 ++s+ +++++Gs+D+ v +Wd tr|F6RBK2|F6RBK2_CIOIN 104 ISSI--KTTEKFIITGSYDCAVTVWD 127 6666..44567799***********9 PP == domain 2 score: 5.8 bits; conditional E-value: 0.3 EEESS.SSEEEEE....EETTSSE....EEEEETTSEEEEE CS WD40 6 tltGH.ssvtsla....fspdgaw....lasGsdDgtvriW 37 + GH +v s+a +s+++ ++s s D++ iW tr|F6RBK2|F6RBK2_CIOIN 136 SGIGHsEPVKSIAiinyNSDEK-KqkisFVSTSQDQHAVIW 175 5569*77799999988533333.35877678899******* PP == domain 3 score: 24.3 bits; conditional E-value: 4.3e-07 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 l ++GH +sv + a + ++ +a+Gs+D t+++W+ tr|F6RBK2|F6RBK2_CIOIN 187 LFCCKGHsKSVECAASNEKKSIFATGSWDSTIKVWS 222 56689**999*****99999999************5 PP == domain 4 score: 26.3 bits; conditional E-value: 1e-07 EEESSSS.EEEEEEETTSSE.....EEEEETTSEEEEEE CS WD40 6 tltGHss.vtslafspdgaw.....lasGsdDgtvriWd 38 tl+GH+ v++l +w ++sGs+D+t+riWd tr|F6RBK2|F6RBK2_CIOIN 256 TLSGHTEvVSAL------TWlneneICSGSWDHTIRIWD 288 799**7757***......6655555589**********9 PP == domain 5 score: 18.2 bits; conditional E-value: 3.7e-05 SSSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 10 HssvtslafspdgawlasGsdDgtvriWd 38 +s+ sl++s+ ++++++G D++vr+Wd tr|F6RBK2|F6RBK2_CIOIN 301 MKSILSLDYSHLSRLVVTGNTDRHVRLWD 329 36799**************77*******9 PP == domain 6 score: 19.8 bits; conditional E-value: 1.1e-05 EESS.SSEEEEEEETTSSE.EEEEETTSEEEEEE CS WD40 7 ltGH.ssvtslafspdgaw.lasGsdDgtvriWd 38 lt H ++vts+ + p+ + l+sGs D+ v++Wd tr|F6RBK2|F6RBK2_CIOIN 342 LTSHiGWVTSVHWAPNDSHtLVSGSLDNCVKMWD 375 789*999*****9999999999***********9 PP == domain 7 score: 8.4 bits; conditional E-value: 0.048 EEEEEESS.SSEEEEEEETTSSE.....EEEEETTSEE CS WD40 3 clrtltGH.ssvtslafspdgaw.....lasGsdDgtv 34 +l+ l +H + v s+ +w +asG+ D++v tr|F6RBK2|F6RBK2_CIOIN 382 PLYDLQAHtDKVMSV------DWslpdiVASGGADCKV 413 678899**555****......8888887899*99*987 PP >> tr|F6UNP2|F6UNP2_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.9 0.3 0.00042 0.036 11 38 .] 192 219 .. 177 219 .. 0.87 2 ? 10.0 0.0 0.014 1.2 2 34 .. 224 255 .. 223 259 .. 0.80 3 ! 27.1 0.1 5.7e-08 4.8e-06 5 38 .] 273 307 .. 269 307 .. 0.92 4 ! 19.7 0.1 1.2e-05 0.001 2 38 .] 317 357 .. 316 357 .. 0.85 5 ? 3.8 0.1 1.3 1.1e+02 9 38 .] 370 400 .. 361 400 .. 0.73 6 ! 19.1 0.0 2e-05 0.0017 3 38 .] 406 442 .. 404 442 .. 0.88 Alignments for each domain: == domain 1 score: 14.9 bits; conditional E-value: 0.00042 SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 11 ssvtslafspdgawlasGsdDgtvriWd 38 +svts+ +++ g+++a G+ +g v +Wd tr|F6UNP2|F6UNP2_CIOIN 192 DSVTSVNWNDRGNLVAVGTHKGYVQVWD 219 46****************88*******9 PP == domain 2 score: 10.0 bits; conditional E-value: 0.014 EEEEEEESS.SSEEEEEEETTSSE....EEEEETTSEE CS WD40 2 qclrtltGH.ssvtslafspdgaw....lasGsdDgtv 34 ++++ l+GH v +l aw l+sGs+D+ + tr|F6UNP2|F6UNP2_CIOIN 224 KKIKQLEGHtARVGAL------AWngeqLSSGSRDRII 255 567899***666****......55555599******98 PP == domain 3 score: 27.1 bits; conditional E-value: 5.7e-08 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++l GH + v++l++spd + lasG+ D+ + +W+ tr|F6UNP2|F6UNP2_CIOIN 273 KKLAGHrQEVCGLKWSPDRQHLASGGNDNRLLVWN 307 6788**999*************************8 PP == domain 4 score: 19.7 bits; conditional E-value: 1.2e-05 EEEEEEESS.SSEEEEEEETTSSEEE.EEE..TTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawla.sGs..dDgtvriWd 38 q+++t+ H v ++a+sp+++ l+ sG+ D+ +r+W+ tr|F6UNP2|F6UNP2_CIOIN 317 QPMQTYCEHlAAVKAIAWSPHQHGLLaSGGgtADRCIRFWN 357 78999****999************752664447*******8 PP == domain 5 score: 3.8 bits; conditional E-value: 1.3 SSSSEEEEEEETTSSEEEEE...ETTSEEEEEE CS WD40 9 GHssvtslafspdgawlasG...sdDgtvriWd 38 G v+ la+s++ + l+s s + + +W+ tr|F6UNP2|F6UNP2_CIOIN 370 GS-QVCNLAWSKHASELVSThgyS-QNQILLWK 400 33.69************9953233.99999995 PP == domain 6 score: 19.1 bits; conditional E-value: 2e-05 EEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 ++ +ltGH+ v la+spdg +++G D t+r+W+ tr|F6UNP2|F6UNP2_CIOIN 406 QVAKLTGHTYrVLYLATSPDGEAIVTGAGDETLRFWN 442 67889***556****************66*******8 PP >> tr|A0A1W3JEA6|A0A1W3JEA6_CIOIN histone-binding protein RBBP4 OS=Ciona intestinalis OX=7719 GN=LOC104265886 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.6 0.3 0.0005 0.042 7 38 .] 173 206 .. 167 206 .. 0.72 2 ! 16.4 0.4 0.00013 0.011 4 38 .] 220 256 .. 217 256 .. 0.76 3 ! 30.7 0.0 4.1e-09 3.5e-07 2 38 .] 264 302 .. 263 302 .. 0.90 4 ! 21.2 0.1 4.1e-06 0.00035 4 38 .] 310 346 .. 308 346 .. 0.85 5 ! 18.9 0.1 2.3e-05 0.0019 4 37 .. 367 402 .. 364 403 .. 0.82 Alignments for each domain: == domain 1 score: 14.6 bits; conditional E-value: 0.0005 EESS..SSEEEEEEETTSSE.EEEEETTSEEEEEE CS WD40 7 ltGH..ssvtslafspdgaw.lasGsdDgtvriWd 38 l+GH + ++l+++p+ + l+s+sdD+t+ +Wd tr|A0A1W3JEA6|A0A1W3JEA6_CIOIN 173 LRGHqkEG-YGLSWNPNLSGhLLSASDDHTICLWD 206 56775333.577777766665569999*******9 PP == domain 2 score: 16.4 bits; conditional E-value: 0.00013 EEEEESSSS.EEEEEEETTSSE......EEEEE..TTSEEEEEE CS WD40 4 lrtltGHss.vtslafspdgaw......lasGs..dDgtvriWd 38 ++++tGH+ v ++ +w l+ Gs dD++++iWd tr|A0A1W3JEA6|A0A1W3JEA6_CIOIN 220 QHIYTGHTAvVEDV------SWhllhesLF-GSvaDDQKLMIWD 256 89*****7757***......5544444488.76458*******9 PP == domain 3 score: 30.7 bits; conditional E-value: 4.1e-09 EEEEEEESS.SSEEEEEEETTSSEE.EEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawl.asGsdDgtvriWd 38 ++ ++ ++H v++l+f+p++ ++ a+Gs D+tv +Wd tr|A0A1W3JEA6|A0A1W3JEA6_CIOIN 264 KPSHVVDAHtAEVNCLSFNPYSEFIlATGSADKTVALWD 302 688999***777************6379**********9 PP == domain 4 score: 21.2 bits; conditional E-value: 4.1e-06 EEEEESSSS.EEEEEEETTSSEEE.EEETTSEEEEEE CS WD40 4 lrtltGHss.vtslafspdgawla.sGsdDgtvriWd 38 l++++ H++ + +++sp++ ++ s++ D+ + +Wd tr|A0A1W3JEA6|A0A1W3JEA6_CIOIN 310 LHSFESHKDeIFQVQWSPHNETILaSSGTDRRLNVWD 346 89*****556************7525567*******9 PP == domain 5 score: 18.9 bits; conditional E-value: 2.3e-05 EEEEESS.SSEEEEEEETTSSEEEEE.ETTSEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasG.sdDgtvriW 37 l + GH +++++++p+ +w++++ s+D+ +W tr|A0A1W3JEA6|A0A1W3JEA6_CIOIN 367 LFVHGGHtAKISDFSWNPNEPWVSCSvSEDNIMQVW 402 556679*666************9755779****999 PP >> tr|H2XNQ0|H2XNQ0_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.0 0.1 0.00076 0.065 12 38 .] 276 302 .. 262 302 .. 0.82 2 ! 16.4 0.2 0.00013 0.011 5 38 .] 311 345 .. 307 345 .. 0.70 3 ! 12.1 0.0 0.0031 0.26 7 38 .] 404 436 .. 397 436 .. 0.89 4 ! 12.2 0.0 0.003 0.25 8 38 .] 448 479 .. 441 479 .. 0.84 5 ? 3.4 0.0 1.8 1.5e+02 13 37 .. 497 519 .. 483 519 .. 0.72 6 ! 19.1 0.2 1.9e-05 0.0016 9 38 .] 534 564 .. 525 564 .. 0.90 7 ? 2.2 0.0 4.2 3.6e+02 20 38 .] 692 710 .. 675 710 .. 0.76 8 ! 21.5 0.1 3.3e-06 0.00028 6 37 .. 762 794 .. 758 794 .. 0.90 Alignments for each domain: == domain 1 score: 14.0 bits; conditional E-value: 0.00076 SEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 12 svtslafspdgawlasGsdDgtvriWd 38 +v +l ++p+ +++++Gs+D+ vr+W+ tr|H2XNQ0|H2XNQ0_CIOIN 276 GVLCLTYDPEWNLIVTGSRDCDVRVWN 302 477886666656699***********8 PP == domain 2 score: 16.4 bits; conditional E-value: 0.00013 EEEESSSS......EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 5 rtltGHss......vtslafspdgawlasGsdDgtvriWd 38 +l+GH+s v+s+ d++ + s s+D++vr+Wd tr|H2XNQ0|H2XNQ0_CIOIN 311 AVLKGHNSavlnvvVRSF----DHQII-SVSKDKNVRVWD 345 689***555544433444....77775.7899*******9 PP == domain 3 score: 12.1 bits; conditional E-value: 0.0031 EESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 7 ltGH.ssvtslafspdgawlasGsdDgtvriWd 38 + H ++v + f+p + +++Gs+D v +Wd tr|H2XNQ0|H2XNQ0_CIOIN 404 TKSHqKPVARVLFNPLFNQIVTGSEDSMVCLWD 436 4689999****9********************9 PP == domain 4 score: 12.2 bits; conditional E-value: 0.003 ESSSS..EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 8 tGHss..vtslafspdgawlasGsdDgtvriWd 38 tG + +t++af+p ++ l+ G+++g +W+ tr|H2XNQ0|H2XNQ0_CIOIN 448 TGN-DveITCMAFDPTNRRLLIGGRNGAAILWN 479 566.4449************************8 PP == domain 5 score: 3.4 bits; conditional E-value: 1.8 EEEEEEETTSSE....EEEEETTSEEEEE CS WD40 13 vtslafspdgaw....lasGsdDgtvriW 37 +t++ + +++++++++vri+ tr|H2XNQ0|H2XNQ0_CIOIN 497 ITDV------VFtrqrIVTAGWNRHVRIY 519 6666......333344779********97 PP == domain 6 score: 19.1 bits; conditional E-value: 1.9e-05 SS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 9 GH.ssvtslafspdgawlasGsdDgtvriWd 38 +H ++v sl+++++ ++las+s+Dg v+iW+ tr|H2XNQ0|H2XNQ0_CIOIN 534 THdDDVLSLDYHKSDSLLASASYDGDVYIWS 564 79777*************************5 PP == domain 7 score: 2.2 bits; conditional E-value: 4.2 TTSSEEEEEETTSEEEEEE CS WD40 20 pdgawlasGsdDgtvriWd 38 ++ l++G+ g +r+Wd tr|H2XNQ0|H2XNQ0_CIOIN 692 EKNKVLVTGDSRGYLRVWD 710 45556899*66*******9 PP == domain 8 score: 21.5 bits; conditional E-value: 3.3e-06 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 6 tltGH.ssvtslafspdgawlasGsdDgtvriW 37 + ++H s vts+a+ + ++asG+ Dg+vr+W tr|H2XNQ0|H2XNQ0_CIOIN 762 SVRAHtSAVTSIAYVTNYGMIASGGVDGSVRLW 794 6789*777****99999999************* PP >> tr|F6ZHD7|F6ZHD7_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.0 0.1 0.00079 0.067 5 38 .] 47 85 .. 44 85 .. 0.76 2 ! 11.5 0.3 0.0048 0.41 8 38 .] 93 129 .. 87 129 .. 0.76 3 ! 18.0 0.3 4.4e-05 0.0037 2 38 .] 180 241 .. 179 241 .. 0.72 4 ? 3.2 0.1 2 1.7e+02 23 38 .] 285 299 .. 273 299 .. 0.80 5 ? 6.0 0.1 0.26 22 9 38 .] 319 350 .. 308 350 .. 0.74 6 ? 6.0 0.1 0.27 23 9 37 .. 367 394 .. 359 395 .. 0.79 7 ? 4.8 0.1 0.62 52 16 33 .. 531 548 .. 514 549 .. 0.84 8 ? 5.7 0.0 0.32 27 8 34 .. 564 597 .. 558 600 .. 0.66 9 ! 29.9 0.2 7.3e-09 6.2e-07 2 38 .] 619 657 .. 618 657 .. 0.93 10 ? 10.4 0.0 0.011 0.91 2 38 .] 662 705 .. 661 705 .. 0.85 Alignments for each domain: == domain 1 score: 14.0 bits; conditional E-value: 0.00079 EEEESS.SSEEEEE....EETTSSEEEEEETTSEEEEEE CS WD40 5 rtltGH.ssvtsla....fspdgawlasGsdDgtvriWd 38 ++l+GH v+ ++ ++l+sG dDg v+ Wd tr|F6ZHD7|F6ZHD7_CIOIN 47 GILSGHeERVSTCSfgvkGANGEPYLISGADDGFVKCWD 85 5789**7779766633336666666*************9 PP == domain 2 score: 11.5 bits; conditional E-value: 0.0048 ESS.SS....EEEEEEETTSSEEE.EEETTSEEEEEE CS WD40 8 tGH.ss....vtslafspdgawla.sGsdDgtvriWd 38 ++H s+ v +l sp ++ l+ sG+++g + +W+ tr|F6ZHD7|F6ZHD7_CIOIN 93 KAHkSHgafkVVCLHCSPASNNLVvSGDEKGFIVVWN 129 566433667999***88888886538999*******8 PP == domain 3 score: 18.0 bits; conditional E-value: 4.4e-05 EEEEEEESS.SSEEEEE..............EETTSSE..........EEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtsla..............fspdgaw..........lasGsdDgtvriWd 38 + +r+l+GH + ++s+ sp+++ ++++s+D+t+r+W+ tr|F6ZHD7|F6ZHD7_CIOIN 180 NVIRKLRGHgNEIHSIVwsaspsedifvsklDSPNNQTvnehdsfqsiVVTSSKDRTLRLWS 241 67899****888888875555666666666644444447777777887889**********5 PP == domain 4 score: 3.2 bits; conditional E-value: 2 SEEEEEETTSEEEEEE CS WD40 23 awlasGsdDgtvriWd 38 ++l s+s++g + +Wd tr|F6ZHD7|F6ZHD7_CIOIN 285 KFL-SCSYNGDIILWD 299 455.7999*******9 PP == domain 5 score: 6.0 bits; conditional E-value: 0.26 SSSS.EEEEE..EETTSSEEEEEETTSEEEEEE CS WD40 9 GHss.vtsla..fspdgawlasGsdDgtvriWd 38 GH+ v ++ +p ++ +++++ D+ ++ W+ tr|F6ZHD7|F6ZHD7_CIOIN 319 GHQRiVFNISsgLDPTKNIITTSM-DRCIKYWS 350 78444455556669999**98766.*******5 PP == domain 6 score: 6.0 bits; conditional E-value: 0.27 SSSSEEEEEEETTSSEEEE.E.ETTSEEEEE CS WD40 9 GHssvtslafspdgawlas.G.sdDgtvriW 37 G v+++++sp + +++ G + Dg +riW tr|F6ZHD7|F6ZHD7_CIOIN 367 GF--VYAMKVSPIDPTVIAlGiG-DGVIRIW 394 44..8999999999998755688.******* PP == domain 7 score: 4.8 bits; conditional E-value: 0.62 EEEETTSSEEEEEETTSE CS WD40 16 lafspdgawlasGsdDgt 33 +++ pdg ++a G dDg+ tr|F6ZHD7|F6ZHD7_CIOIN 531 ISWRPDGEFVAIGNDDGS 548 56***********99*97 PP == domain 8 score: 5.7 bits; conditional E-value: 0.32 ESS.SSEEEEE.......EETTSSEEEEEETTSEE CS WD40 8 tGH.ssvtsla.......fspdgawlasGsdDgtv 34 + H + +++la + ++ w+asGs + +v tr|F6ZHD7|F6ZHD7_CIOIN 564 KVHnKIINCLAwhtanetVLESKYWIASGS-NSSV 597 6795558***95555555555555599999.6554 PP == domain 9 score: 29.9 bits; conditional E-value: 7.3e-09 EEEEEEESS.SSEEEEEEETTSSE.EEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgaw.lasGsdDgtvriWd 38 q+ rtltGH + +tsl+++pd++ l+s+s+Dgt +Wd tr|F6ZHD7|F6ZHD7_CIOIN 619 QPFRTLTGHcGRITSLSWNPDSQNqLVSASYDGTAQVWD 657 789******666*************999999*******9 PP == domain 10 score: 10.4 bits; conditional E-value: 0.011 EEEEEEESS.SSEEEEEEETTSSE............EEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgaw............lasGsdDgtvriWd 38 +++ ++GH + ++ w + sG dD v++W+ tr|F6ZHD7|F6ZHD7_CIOIN 662 EPVSNYRGHdGRLLCV------VWrrkmdedersglIYSGADDYAVHVWK 705 68999****5559999......8888888899999778***********6 PP >> tr|F6R3V0|F6R3V0_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 13.2 0.0 0.0014 0.12 4 28 .. 142 167 .. 140 185 .. 0.76 2 ? 1.5 0.0 7.1 6e+02 25 38 .] 261 273 .. 234 273 .. 0.79 3 ? 7.9 0.0 0.066 5.6 5 37 .. 284 318 .. 280 319 .. 0.84 4 ? 5.7 0.1 0.32 27 8 37 .. 330 358 .. 323 359 .. 0.74 5 ! 19.2 0.0 1.8e-05 0.0015 4 38 .] 407 442 .. 404 442 .. 0.90 6 ! 15.5 0.0 0.00026 0.022 16 38 .] 504 526 .. 490 526 .. 0.89 7 ? 10.0 0.6 0.014 1.2 5 38 .] 538 572 .. 534 572 .. 0.78 8 ? 5.9 0.0 0.29 25 11 31 .. 612 631 .. 600 634 .. 0.83 9 ! 17.4 0.8 6.5e-05 0.0055 4 38 .] 649 685 .. 646 685 .. 0.77 Alignments for each domain: == domain 1 score: 13.2 bits; conditional E-value: 0.0014 EEEEESS.SSEEEEEEETTSSEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasG 28 +r++ GH ++v ++a +pd+ +a+G tr|F6R3V0|F6R3V0_CIOIN 142 QRHYLGHnDDVKCIAIHPDKLKIATG 167 799****666************9998 PP == domain 2 score: 1.5 bits; conditional E-value: 7.1 EEEEETTSEEEEEE CS WD40 25 lasGsdDgtvriWd 38 ++s++ ++++ +W+ tr|F6R3V0|F6R3V0_CIOIN 261 IVSCG-KNHINFWS 273 6799*.*******5 PP == domain 3 score: 7.9 bits; conditional E-value: 0.066 EEEESS.SS..EEEEEEETTSSEEEEEETTSEEEEE CS WD40 5 rtltGH.ss..vtslafspdgawlasGsdDgtvriW 37 + ++ H ++ + +l f +g+ + sG+ g+v +W tr|F6R3V0|F6R3V0_CIOIN 284 GLFERHeKPkyILCLGFTANGDVI-SGDSSGNVQVW 318 55777987788************7.7*66******* PP == domain 4 score: 5.7 bits; conditional E-value: 0.32 ESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 8 tGH.ssvtslafspdgawlasGsdDgtvriW 37 ++H ++v +++ +dg ++G++Dg ++ W tr|F6R3V0|F6R3V0_CIOIN 330 SAHdGPVFCICAIRDGF--ITGGKDGGIKKW 358 48977799996555544..48*******999 PP == domain 5 score: 19.2 bits; conditional E-value: 1.8e-05 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +++ GH ++la++p++a +++G +D+ + +Wd tr|F6R3V0|F6R3V0_CIOIN 407 QTIVHGHvEELWCLAVHPSKAQFLTGAYDKQLVMWD 442 566789*8889***************99*******9 PP == domain 6 score: 15.5 bits; conditional E-value: 0.00026 EEEETTSSEEEEEETTSEEEEEE CS WD40 16 lafspdgawlasGsdDgtvriWd 38 ++fspdg++la Gs D+ ++i++ tr|F6R3V0|F6R3V0_CIOIN 504 IKFSPDGKFLAIGSHDNMIYIYN 526 469**********99******97 PP == domain 7 score: 10.0 bits; conditional E-value: 0.014 EEEESS.SSEEEEEEETTSSEE.EEEETTSEEEEEE CS WD40 5 rtltGH.ssvtslafspdgawl.asGsdDgtvriWd 38 ++l+GH s +t++++s d++ + + ++ D + Wd tr|F6R3V0|F6R3V0_CIOIN 538 GKLSGHsSYITHFDWSADSQNIqSNSG-DYELLYWD 572 5699**555**********99766666.77777776 PP == domain 8 score: 5.9 bits; conditional E-value: 0.29 SSEEEEEEETTSSEEEEEETT CS WD40 11 ssvtslafspdgawlasGsdD 31 ++++s+a s +g++lasG+ D tr|F6R3V0|F6R3V0_CIOIN 612 TDINSVARSTEGKLLASGD-D 631 46*************9987.6 PP == domain 9 score: 17.4 bits; conditional E-value: 6.5e-05 EEEEESS.SSEEEEEEETTSSE.EEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgaw.lasGsdDgtvriWd 38 + ++GH s+vts++f + +++G+ D++ + W+ tr|F6R3V0|F6R3V0_CIOIN 649 SHNYSGHsSHVTSVQFMAGDDRlISTGGQDCSTMQWK 685 689****888****95555555156899****99995 PP >> tr|F6QDG1|F6QDG1_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 GN=LOC100181112 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.7 0.0 2.5e-05 0.0021 6 38 .] 18 51 .. 13 51 .. 0.87 2 ! 27.6 0.1 3.9e-08 3.3e-06 3 38 .] 102 138 .. 100 138 .. 0.90 3 ? 6.9 0.0 0.13 11 13 34 .. 200 220 .. 186 223 .. 0.82 4 ! 27.2 0.0 5.3e-08 4.5e-06 1 38 [] 229 271 .. 229 271 .. 0.86 5 ? 2.9 0.0 2.6 2.2e+02 9 28 .. 284 304 .. 275 308 .. 0.76 Alignments for each domain: == domain 1 score: 18.7 bits; conditional E-value: 2.5e-05 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 6 tltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +++ + ++s++fs +g l+s+sdD ++ i+d tr|F6QDG1|F6QDG1_CIOIN 18 VFRENtDRINSIDFSANGENLISASDDDSIVIYD 51 67777445************************98 PP == domain 2 score: 27.6 bits; conditional E-value: 3.9e-08 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 lr + GH + v +l+ sp + ++sGs D+t+r+Wd tr|F6QDG1|F6QDG1_CIOIN 102 YLRYFAGHtKRVVCLCMSPVDDSFLSGSLDKTIRLWD 138 577799**99999***999999999***********9 PP == domain 3 score: 6.9 bits; conditional E-value: 0.13 EEEEEEETTSSEEEEEETTSEE CS WD40 13 vtslafspdgawlasGsdDgtv 34 tsl+fs+dg++++ ++ +gtv tr|F6QDG1|F6QDG1_CIOIN 200 WTSLKFSSDGKLILIAT-NGTV 220 69**********99899.8887 PP == domain 4 score: 27.2 bits; conditional E-value: 5.3e-08 TEEEEEEESS.SS..E.EEEEEETTSSEEEEE.ETTSEEEEEE CS WD40 1 gqclrtltGH.ss..v.tslafspdgawlasG.sdDgtvriWd 38 gq+l+t+ GH + +fspdg++++sG s Dg +++W+ tr|F6QDG1|F6QDG1_CIOIN 229 GQPLQTFMGHlNTkgLpLEASFSPDGQYVLSGsSQDGRIHVWN 271 799*******95556446888***********558*******8 PP == domain 5 score: 2.9 bits; conditional E-value: 2.6 SS.SSEEEEEEETTSSEEEEE CS WD40 9 GH.ssvtslafspdgawlasG 28 H ++ +++f+p +las tr|F6QDG1|F6QDG1_CIOIN 284 SHpGPLQCVKFNPRYMMLAST 304 578889*******99999864 PP >> tr|F6TVK8|F6TVK8_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.8 0.6 3.1e-07 2.6e-05 2 38 .] 236 271 .. 235 271 .. 0.93 2 ? 7.1 0.0 0.12 10 1 38 [] 275 312 .. 275 312 .. 0.86 3 ? 8.3 0.0 0.05 4.2 5 38 .] 384 419 .. 380 419 .. 0.74 4 ! 13.2 0.0 0.0014 0.12 9 38 .] 437 467 .. 429 467 .. 0.85 5 ! 20.5 0.1 7.1e-06 0.0006 6 38 .] 477 513 .. 472 513 .. 0.92 6 ! 17.2 0.2 7.5e-05 0.0063 3 38 .] 519 553 .. 517 553 .. 0.78 Alignments for each domain: == domain 1 score: 24.8 bits; conditional E-value: 3.1e-07 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +c+++ +GH + v ++ + ++l+sGs+D+tv++W+ tr|F6TVK8|F6TVK8_CIOIN 236 DCVQVAKGHhKAVLCI--HATDHLLFSGSKDRTVKVWN 271 6899999**999****..999999*************8 PP == domain 2 score: 7.1 bits; conditional E-value: 0.12 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 gq + +l+GH ++v+ ++ +p + ++ s s + +++Wd tr|F6TVK8|F6TVK8_CIOIN 275 GQEIMSLEGHpNNVNIVKHCPINGLVYSVS-LCYIKVWD 312 678999****99988888888888899999.*******8 PP == domain 3 score: 8.3 bits; conditional E-value: 0.05 EEEESS.SSEEEEEEETTSSE.EEEEETTSEEEEEE CS WD40 5 rtltGH.ssvtslafspdgaw.lasGsdDgtvriWd 38 ++l GH +++ ++ ++ g+ +++G +D+ ++++d tr|F6TVK8|F6TVK8_CIOIN 384 GKLIGHkGNIMTMCIPRLGNStVITGAKDHFIKVFD 419 6789**6559666645555555679*********98 PP == domain 4 score: 13.2 bits; conditional E-value: 0.0014 SS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 9 GH.ssvtslafspdgawlasGsdDgtvriWd 38 H ++v l s + ++l+s+s+D++++ Wd tr|F6TVK8|F6TVK8_CIOIN 437 PHmDGVEFLLLSTNENFLFSCSRDKSIKKWD 467 577778888899******************9 PP == domain 5 score: 20.5 bits; conditional E-value: 7.1e-06 EEESS.SSEEEEE...EETTSSEEEEEETTSEEEEEE CS WD40 6 tltGH.ssvtsla...fspdgawlasGsdDgtvriWd 38 ++ +H +++++++ + d+ +l+sG++Dg +++Wd tr|F6TVK8|F6TVK8_CIOIN 477 EYGAHgNWICAMDlvrSNNDQELLVSGGRDGLLKLWD 513 5899*999****9*9999999***************9 PP == domain 6 score: 17.2 bits; conditional E-value: 7.5e-05 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +++ ++H + ++++ ++++ l+++s D+t+ +W+ tr|F6TVK8|F6TVK8_CIOIN 519 SVGSVRAHtDTINCI--ASNNTHLFTASSDRTIQMWK 553 578899**666****..666666666666*******6 PP >> tr|F6QH89|F6QH89_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.8 0.0 2.8 2.3e+02 15 38 .] 130 145 .. 118 145 .. 0.78 2 ! 14.6 0.0 0.00052 0.044 3 38 .] 151 188 .. 149 188 .. 0.78 3 ! 12.0 0.0 0.0033 0.28 5 38 .] 197 232 .. 193 232 .. 0.83 4 ! 35.0 0.2 1.8e-10 1.5e-08 2 37 .. 240 276 .. 239 277 .. 0.93 5 ! 19.5 0.1 1.5e-05 0.0013 12 38 .] 304 332 .. 287 332 .. 0.83 6 ? 3.0 0.0 2.3 1.9e+02 16 34 .. 352 370 .. 350 372 .. 0.86 Alignments for each domain: == domain 1 score: 2.8 bits; conditional E-value: 2.8 EEEEETTSSEEEEEETTSEEEEEE CS WD40 15 slafspdgawlasGsdDgtvriWd 38 sl la G + g+++iW+ tr|F6QH89|F6QH89_CIOIN 130 SL--------LAIGLERGSIKIWN 145 44........8888778******8 PP == domain 2 score: 14.6 bits; conditional E-value: 0.00052 EEEEEESS.SSEEEEEEETTSSE.......EEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgaw.......lasGsdDgtvriWd 38 ++tl H +svt+l + ++s+s+D t ++Wd tr|F6QH89|F6QH89_CIOIN 151 MVYTLADHtQSVTGLT------FatkgeplMISCSEDFTMKVWD 188 5788889*999****5......54455554579**********9 PP == domain 3 score: 12.0 bits; conditional E-value: 0.0033 EEEESS.SSEEEEEEETTSSEEEEE.ETTSEEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasG.sdDgtvriWd 38 t++GH s+++ la sp+ + ++++ ++ + v++W+ tr|F6QH89|F6QH89_CIOIN 197 LTIKGHnSPIHYLALSPNDPSILASvGMGKAVYLWK 232 5789**777************8765578*******5 PP == domain 4 score: 35.0 bits; conditional E-value: 1.8e-10 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 ++lr l+GH ++v s+++spdga+la++s D tv +W tr|F6QH89|F6QH89_CIOIN 240 KKLRLLRGHnNDVVSCSWSPDGALLATASHDTTVIVW 276 678999***99999*************999******* PP == domain 5 score: 19.5 bits; conditional E-value: 1.5e-05 S..EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 12 s..vtslafspdgawlasGsdDgtvriWd 38 + v s++fs+dg+ +a+ ++D+ +r+W+ tr|F6QH89|F6QH89_CIOIN 304 GawVKSVCFSKDGTKIATVCEDNRIRVWK 332 3459*************9999*******6 PP == domain 6 score: 3.0 bits; conditional E-value: 2.3 EEEETTSSEEEEEETTSEE CS WD40 16 lafspdgawlasGsdDgtv 34 ++ spdg +a G Dg+v tr|F6QH89|F6QH89_CIOIN 352 CRISPDGCIIAVGKQDGSV 370 457********9989*998 PP >> tr|F6ZTE1|F6ZTE1_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 GN=LOC100175499 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.8 0.2 5.6e-06 0.00047 6 38 .] 314 347 .. 311 347 .. 0.91 2 ! 13.3 0.0 0.0013 0.11 3 37 .. 357 392 .. 355 393 .. 0.91 3 ! 20.9 0.0 5e-06 0.00043 5 38 .] 401 435 .. 397 435 .. 0.84 4 ! 17.4 0.6 6.8e-05 0.0058 2 38 .] 440 476 .. 439 476 .. 0.85 5 ! 12.2 0.0 0.003 0.25 8 37 .. 480 517 .. 478 518 .. 0.85 6 ? 9.3 0.2 0.024 2.1 14 37 .. 540 563 .. 531 564 .. 0.88 Alignments for each domain: == domain 1 score: 20.8 bits; conditional E-value: 5.6e-06 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 6 tltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++++H s vt+ +fs++g la+G+ D+ ++iW+ tr|F6ZTE1|F6ZTE1_CIOIN 314 KWRAHeSEVTATRFSSSGGILATGGSDRFIHIWN 347 5789*888****************88*******8 PP == domain 2 score: 13.3 bits; conditional E-value: 0.0013 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 +++tl+G +++t+++ p + la++s D riW tr|F6ZTE1|F6ZTE1_CIOIN 357 LQYTLRGSnGGITDIDMGPQDQILAASSNDYATRIW 392 7899****666**************9999******* PP == domain 3 score: 20.9 bits; conditional E-value: 5e-06 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 tltGH + v + +f + + lasGs D+tv++Wd tr|F6ZTE1|F6ZTE1_CIOIN 401 LTLTGHgGKVLAARFLGSVHRLASGSNDRTVKVWD 435 689***555999977777788*************9 PP == domain 4 score: 17.4 bits; conditional E-value: 6.8e-05 EEEEEEESSSSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGHssvtslafspdgawlasGsdDgtvriWd 38 +c+rt+ + ss ++l +d + lasG+ D++vriWd tr|F6ZTE1|F6ZTE1_CIOIN 440 SCTRTFMAGSSCNDLVSADDADCLASGHFDRKVRIWD 476 688887544578999999*********9********9 PP == domain 5 score: 12.2 bits; conditional E-value: 0.003 ESS.SS.......EEEEEEETTSSEEEEEETTSEEEEE CS WD40 8 tGH.ss.......vtslafspdgawlasGsdDgtvriW 37 +GH ++ vts++ + d++ l+++++D+t+ + tr|F6ZTE1|F6ZTE1_CIOIN 480 SGHaQNeivvggrVTSVDMPFDKTTLVCCTKDHTLEVI 517 6887335888889*********************9875 PP == domain 6 score: 9.3 bits; conditional E-value: 0.024 EEEEEETTSSEEEEEETTSEEEEE CS WD40 14 tslafspdgawlasGsdDgtvriW 37 t +++s dg ++a Gs Dg+v W tr|F6ZTE1|F6ZTE1_CIOIN 540 TRCSYSNDGMFVAVGSSDGSVLTW 563 56789**********99****988 PP >> tr|F6RKQ2|F6RKQ2_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.2 0.1 0.054 4.6 12 38 .] 215 245 .. 200 245 .. 0.80 2 ! 23.1 0.1 1e-06 8.7e-05 2 38 .] 250 287 .. 249 287 .. 0.93 3 ! 13.4 0.3 0.0012 0.11 1 33 [. 291 324 .. 291 325 .. 0.90 4 ! 14.8 0.1 0.00043 0.037 13 38 .] 348 373 .. 333 373 .. 0.87 5 ! 31.1 0.0 3.2e-09 2.7e-07 3 38 .] 379 415 .. 377 415 .. 0.92 Alignments for each domain: == domain 1 score: 8.2 bits; conditional E-value: 0.054 S...EEEEE.EETTSSEEEEEETTSEEEEEE CS WD40 12 s...vtsla.fspdgawlasGsdDgtvriWd 38 s + +l+ s+d + +++G+ D+t ++d tr|F6RKQ2|F6RKQ2_CIOIN 215 SvpgILCLDlCSSDTNRVITGGADKTAVVFD 245 2556889999888999999**99***99987 PP == domain 2 score: 23.1 bits; conditional E-value: 1e-06 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 q ++tl+GH + vt++ ++p + ++++s D t+riW+ tr|F6RKQ2|F6RKQ2_CIOIN 250 QVITTLKGHtKKVTHVLYHPVEDVVFTSSPDSTIRIWS 287 67899****988*************************5 PP == domain 3 score: 13.4 bits; conditional E-value: 0.0012 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSE CS WD40 1 gqclrtltGH.ssvtslafspdgawlasGsdDgt 33 g+c ++++H vt+++ + g++l+s+s+D++ tr|F6RKQ2|F6RKQ2_CIOIN 291 GDCSSIIRTHkEAVTGISLHALGDYLLSCSEDQH 324 679999****666******************987 PP == domain 4 score: 14.8 bits; conditional E-value: 0.00043 EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriWd 38 t+ +f+pdg + +G+ D ++iWd tr|F6RKQ2|F6RKQ2_CIOIN 348 LTCAQFHPDGLIFGTGTVDSQIKIWD 373 79999*******87999********9 PP == domain 5 score: 31.1 bits; conditional E-value: 3.2e-09 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++ + GH ++vt+++fs +g +la++ dD +v++Wd tr|F6RKQ2|F6RKQ2_CIOIN 379 NVANFPGHsGPVTAISFSENGYYLATAADDASVKLWD 415 67889***777****************99*******9 PP >> tr|F6TSV6|F6TSV6_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 10.9 0.0 0.0073 0.62 11 38 .] 31 58 .. 26 58 .. 0.90 2 ! 16.9 1.9 9.7e-05 0.0082 5 38 .] 72 106 .. 68 106 .. 0.81 3 ! 20.2 0.0 8.7e-06 0.00074 3 38 .] 112 148 .. 110 148 .. 0.93 4 ! 11.7 0.0 0.0041 0.35 9 38 .] 169 199 .. 159 199 .. 0.86 5 ! 21.6 0.1 3.2e-06 0.00027 5 38 .] 207 241 .. 203 241 .. 0.89 6 ? 8.9 0.1 0.033 2.8 2 34 .. 246 282 .. 245 284 .. 0.77 Alignments for each domain: == domain 1 score: 10.9 bits; conditional E-value: 0.0073 SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 11 ssvtslafspdgawlasGsdDgtvriWd 38 s+v++l+++p+ + l ++++D +riW+ tr|F6TSV6|F6TSV6_CIOIN 31 SGVNALQVDPSINRLYTAGRDSIIRIWN 58 46999999999999**9999*******8 PP == domain 2 score: 16.9 bits; conditional E-value: 9.7e-05 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++ + H ++v+++ + +g+ l+s+s D tv++W+ tr|F6TSV6|F6TSV6_CIOIN 72 GSMEHHtDWVNDIVLCCNGRTLISASSDTTVKVWN 106 56667866688777777*****99988*******8 PP == domain 3 score: 20.2 bits; conditional E-value: 8.7e-06 EEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 c+ tl++H++ v sla+ +++ +as++ D+ + iWd tr|F6TSV6|F6TSV6_CIOIN 112 CMSTLRTHKDyVQSLAYAKHKEHVASAGLDRQIFIWD 148 999*****666**************9999*******9 PP == domain 4 score: 11.7 bits; conditional E-value: 0.0041 SS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 9 GH.ssvtslafspdgawlasGsdDgtvriWd 38 G +s++s+a ++ g+ l++Gs + +r+Wd tr|F6TSV6|F6TSV6_CIOIN 169 GCkNSIYSVAMNDAGTVLVAGSTERALRVWD 199 55577*************************9 PP == domain 5 score: 21.6 bits; conditional E-value: 3.2e-06 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +l+GH ++v ++ +++g+ ++sGs Dg+v++W+ tr|F6TSV6|F6TSV6_CIOIN 207 MKLRGHtDNVKAIWINREGTQVLSGSSDGSVKLWS 241 5799**766****************99*******5 PP == domain 6 score: 8.9 bits; conditional E-value: 0.033 EEEEEEESS.SSEEEEE....EETTSSEEEEEETTSEE CS WD40 2 qclrtltGH.ssvtsla....fspdgawlasGsdDgtv 34 +c+ tl+ H +++ la s g+ ++ +++Dg v tr|F6TSV6|F6TSV6_CIOIN 246 RCIATLRVHnEGIWTLAatqsGSTFGNIFS-SGRDGQV 282 799******666****97666777777765.555*987 PP >> tr|F6TX35|F6TX35_CIOIN chromatin assembly factor 1 subunit B-like isoform X1 OS=Ciona intestinalis OX=7719 GN=LOC100 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.1 0.0 0.24 20 23 37 .. 30 44 .. 5 45 .. 0.70 2 ! 18.0 0.1 4.2e-05 0.0035 5 38 .] 55 89 .. 51 89 .. 0.89 3 ! 28.7 1.9 1.8e-08 1.6e-06 5 38 .] 115 149 .. 111 149 .. 0.95 4 ! 16.6 0.0 0.00012 0.01 2 38 .] 154 191 .. 153 191 .. 0.77 5 ? 2.4 0.0 3.6 3e+02 10 27 .. 226 246 .. 219 251 .. 0.77 6 ! 13.9 0.4 0.00082 0.07 10 34 .. 345 370 .. 338 373 .. 0.89 Alignments for each domain: == domain 1 score: 6.1 bits; conditional E-value: 0.24 SEEEEEETTSEEEEE CS WD40 23 awlasGsdDgtvriW 37 + +a+++ D++vr+W tr|F6TX35|F6TX35_CIOIN 30 QRIATAGLDNNVRVW 44 45899999******* PP == domain 2 score: 18.0 bits; conditional E-value: 4.2e-05 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 l+ H + v+ ++fs++g +las++dD tv +W+ tr|F6TX35|F6TX35_CIOIN 55 SNLSRHdKAVNIVRFSKSGVYLASAGDDATVILWK 89 567889888*************************6 PP == domain 3 score: 28.7 bits; conditional E-value: 1.8e-08 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++l+GH ++++l++s+d ++++Gs D+t +Wd tr|F6TX35|F6TX35_CIOIN 115 KILRGHlEDINDLCWSSDDLYIVTGSVDHTAVLWD 149 689*******************************9 PP == domain 4 score: 16.6 bits; conditional E-value: 0.00012 EEEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 q++ +l+ ++ v+++a++p g+++a+ s D+++ri++ tr|F6TX35|F6TX35_CIOIN 154 QKMAILSEAKHfVHGVAWDPLGQYVATLSCDRSLRIYN 191 556666644334*************97455******98 PP == domain 5 score: 2.4 bits; conditional E-value: 3.6 S.SS.E.EEEEEETTSSEEEE CS WD40 10 H.ss.v.tslafspdgawlas 27 H s v + l+fs+dg++l++ tr|F6TX35|F6TX35_CIOIN 226 HdESvVrRRLSFSKDGKMLIA 246 754545889*********974 PP == domain 6 score: 13.9 bits; conditional E-value: 0.00082 S.SSEEEEEEETTSSEEEEEETTSEE CS WD40 10 H.ssvtslafspdgawlasGsdDgtv 34 H s+t+l++s+dg +l+ +s+Dg + tr|F6TX35|F6TX35_CIOIN 345 HyASITDLSWSSDGLFLVISSRDGFC 370 8788**************9999*977 PP >> tr|H2XZE5|H2XZE5_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 31.1 0.1 3e-09 2.5e-07 3 38 .] 48 84 .. 46 84 .. 0.91 2 ? 8.8 0.1 0.034 2.9 3 37 .. 90 128 .. 88 129 .. 0.74 3 ? 6.3 0.1 0.21 18 8 38 .] 137 171 .. 133 171 .. 0.88 4 ? 1.1 0.0 9.2 7.7e+02 21 38 .] 205 222 .. 188 222 .. 0.77 5 ! 17.8 0.1 4.9e-05 0.0041 6 37 .. 315 351 .. 310 352 .. 0.88 6 ! 18.9 0.0 2.3e-05 0.0019 3 38 .] 358 394 .. 356 394 .. 0.85 Alignments for each domain: == domain 1 score: 31.1 bits; conditional E-value: 3e-09 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 + ++l GH ++v++l ++ +g+ l+sGsdD ++ +Wd tr|H2XZE5|H2XZE5_CIOIN 48 LEKELVGHsGCVNCLEWNESGSILVSGSDDTNIILWD 84 567899**666*************************9 PP == domain 2 score: 8.8 bits; conditional E-value: 0.034 EEEEE.ESS.SSEEEEE..EETTSSEEEEEETTSEEEEE CS WD40 3 clrtl.tGH.ssvtsla..fspdgawlasGsdDgtvriW 37 +++t+ ++H +++ s++ + +++a+G D++v + tr|H2XZE5|H2XZE5_CIOIN 90 PIKTYaSTHhGNIFSVKflPKTNDHFVATGAADNHVFVH 128 677775466577*99*976666666699**99***9875 PP == domain 3 score: 6.3 bits; conditional E-value: 0.21 ESS.SS..EEEEEEETTSSEEE.EEETTSEEEEEE CS WD40 8 tGH.ss..vtslafspdgawla.sGsdDgtvriWd 38 GH ++ v l + pd++ ++ s s+Dg +r +d tr|H2XZE5|H2XZE5_CIOIN 137 HGHrCDgrVKRLVVTPDHPNIIwSVSEDGAIRQFD 171 59996678*************99999******987 PP == domain 4 score: 1.1 bits; conditional E-value: 9.2 TSSEEEEEETTSEEEEEE CS WD40 21 dgawlasGsdDgtvriWd 38 ++la G D+ vr++d tr|H2XZE5|H2XZE5_CIOIN 205 QTDYLALGANDQYVRLYD 222 4566765888******98 PP == domain 5 score: 17.8 bits; conditional E-value: 4.9e-05 EEESS.SSEEEEE....EETTSSEEEEEETTSEEEEE CS WD40 6 tltGH.ssvtsla....fspdgawlasGsdDgtvriW 37 + GH + t+++ f +g+++++GsdDg+ +W tr|H2XZE5|H2XZE5_CIOIN 315 RYCGHcNTTTDIKeanfFGNNGQYIVAGSDDGSFFVW 351 5779977789999999********************* PP == domain 6 score: 18.9 bits; conditional E-value: 2.3e-05 EEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 ++r+ ++ +s v++l+ +p+ +la+++ D+ vr+W+ tr|H2XZE5|H2XZE5_CIOIN 358 LVRVMRADDSiVNCLQPHPNTCMLATSGIDPIVRLWS 394 566777774448************************5 PP >> tr|F6ZGT0|F6ZGT0_CIOIN WD repeat-containing protein 44-like OS=Ciona intestinalis OX=7719 GN=LOC100175773 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 12.5 0.4 0.0023 0.2 9 37 .. 211 240 .. 203 241 .. 0.88 2 ! 23.7 0.3 6.9e-07 5.9e-05 4 37 .. 311 344 .. 308 345 .. 0.87 3 ! 17.4 0.1 6.8e-05 0.0057 2 38 .] 350 387 .. 349 387 .. 0.82 4 ? 10.4 0.1 0.011 0.94 12 38 .] 409 438 .. 400 438 .. 0.85 5 ? 6.0 0.0 0.27 23 7 38 .] 458 488 .. 452 488 .. 0.76 6 ! 17.1 0.1 8.3e-05 0.007 17 38 .] 511 532 .. 493 532 .. 0.83 7 ? 4.4 0.0 0.86 73 6 33 .. 552 579 .. 547 579 .. 0.79 Alignments for each domain: == domain 1 score: 12.5 bits; conditional E-value: 0.0023 SS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 9 GH.ssvtslafspdgawlasGsdDgtvriW 37 H + v+s++fs+ g++la+++ ++ + +W tr|F6ZGT0|F6ZGT0_CIOIN 211 VHvGAVWSMKFSHCGRLLATAGQNNVIWVW 240 68778***********************99 PP == domain 2 score: 23.7 bits; conditional E-value: 6.9e-07 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 ++ GH +v +la+s++ l+ +s+D+tvr+W tr|F6ZGT0|F6ZGT0_CIOIN 311 FSSYVGHsADVLDLAWSKNYFTLS-SSMDKTVRLW 344 56899**777************96.566******* PP == domain 3 score: 17.4 bits; conditional E-value: 6.8e-05 EEEEEEESS.SSEEEEEEETTSSE.EEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgaw.lasGsdDgtvriWd 38 +cl + H ++vt+++f+p + ++sGs D ++r+W+ tr|F6ZGT0|F6ZGT0_CIOIN 350 ECLCCF-QHiDFVTAISFHPRDDRyFLSGSLDSKLRLWN 387 577777.59999*****6666666688***********8 PP == domain 4 score: 10.4 bits; conditional E-value: 0.011 S...EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 12 s...vtslafspdgawlasGsdDgtvriWd 38 + +t + f+ +g++ ++G++Dg + ++d tr|F6ZGT0|F6ZGT0_CIOIN 409 GgalITTVNFCENGKFAVCGTYDGRCLFYD 438 15679***************99****9998 PP == domain 5 score: 6.0 bits; conditional E-value: 0.27 EESSSSEEEEE.EETTSSEEEEEETTSEEEEEE CS WD40 7 ltGHssvtsla.fspdgawlasGsdDgtvriWd 38 +GH +t++ + +++ l+++ D vr++d tr|F6ZGT0|F6ZGT0_CIOIN 458 TKGH-KITGIEpLPAEHKILVTSN-DSRVRLYD 488 5799.7****95555555567656.******98 PP == domain 6 score: 17.1 bits; conditional E-value: 8.3e-05 EEETTSSEEEEEETTSEEEEEE CS WD40 17 afspdgawlasGsdDgtvriWd 38 +fs+d +++++Gs+D++v+iW+ tr|F6ZGT0|F6ZGT0_CIOIN 511 SFSHDCKYIVCGSEDKSVYIWK 532 49*******************6 PP == domain 7 score: 4.4 bits; conditional E-value: 0.86 EEESSSS.EEEEEEETTSSEEEEEETTSE CS WD40 6 tltGHss.vtslafspdgawlasGsdDgt 33 ++++H+ vt+ f p+ +++a ++ D+t tr|F6ZGT0|F6ZGT0_CIOIN 552 SIRAHDAvVTCAIFAPYPHLMARSD-DRT 579 6789*5557***9******998755.886 PP >> tr|F6VQ02|F6VQ02_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 GN=LOC100176230 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.8 0.0 0.31 26 5 33 .. 19 51 .. 15 54 .. 0.75 2 ? 8.6 0.3 0.041 3.5 4 38 .] 63 98 .. 60 98 .. 0.87 3 ! 12.0 0.0 0.0033 0.28 5 35 .. 106 136 .. 102 138 .. 0.82 4 ! 12.6 0.4 0.0021 0.18 9 38 .] 152 182 .. 148 182 .. 0.89 5 ? 6.2 0.0 0.22 19 16 34 .. 241 259 .. 227 263 .. 0.84 6 ! 34.0 0.0 3.7e-10 3.2e-08 3 37 .. 269 304 .. 267 305 .. 0.92 Alignments for each domain: == domain 1 score: 5.8 bits; conditional E-value: 0.31 EEEESS.SSEEEEE...EETTSSEEEEEETTSE CS WD40 5 rtltGH.ssvtsla...fspdgawlasGsdDgt 33 t++GH +v +l+ dg +l+s+++Dg+ tr|F6VQ02|F6VQ02_CIOIN 19 LTCSGHtRPVVDLSfsnKTEDGYFLISACKDGK 51 5789**777999986666666677889998985 PP == domain 2 score: 8.6 bits; conditional E-value: 0.041 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++t+ GH + v++ +++ a+G D + +Wd tr|F6VQ02|F6VQ02_CIOIN 63 IGTFLGHkGAVWAATLNHNALRAATGAADFSANLWD 98 67999**555****999999999***99*******9 PP == domain 3 score: 12.0 bits; conditional E-value: 0.0033 EEEESSSS.EEEEEEETTSSEEEEEETTSEEE CS WD40 5 rtltGHss.vtslafspdgawlasGsdDgtvr 35 +++ H++ v ++afspd + l++G+ + +r tr|F6VQ02|F6VQ02_CIOIN 106 TSYP-HKHiVKAVAFSPDCTRLLTGGQEKIIR 136 5554.88857****************988887 PP == domain 4 score: 12.6 bits; conditional E-value: 0.0021 SS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 9 GH.ssvtslafspdgawlasGsdDgtvriWd 38 H + + + + +dg+ ++++ dD+++r Wd tr|F6VQ02|F6VQ02_CIOIN 152 SHeGAIKKVIWGDDGRTMITAADDKSIRKWD 182 5766699999***********99*******9 PP == domain 5 score: 6.2 bits; conditional E-value: 0.22 EEEETTSSEEEEEETTSEE CS WD40 16 lafspdgawlasGsdDgtv 34 + +pd++++++G++D ++ tr|F6VQ02|F6VQ02_CIOIN 241 ASLHPDKKFIVAGGEDFKL 259 4579**********99776 PP == domain 6 score: 34.0 bits; conditional E-value: 3.7e-10 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 l +++ H ++v+ ++fspdg ++asGs+Dgtvr+W tr|F6VQ02|F6VQ02_CIOIN 269 ELDSYKSHfGPVHIVRFSPDGELFASGSEDGTVRLW 304 57799***888************************* PP >> tr|F6YXI8|F6YXI8_CIOIN Ribosome biogenesis protein BOP1 homolog OS=Ciona intestinalis OX=7719 PE=3 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.6 0.1 4.6e-09 3.9e-07 7 37 .. 415 446 .. 410 447 .. 0.92 2 ? 1.7 0.0 6 5.1e+02 9 27 .. 566 585 .. 560 590 .. 0.85 3 ? 5.7 0.0 0.33 28 5 38 .] 610 640 .. 604 640 .. 0.84 4 ? 1.4 0.1 7.7 6.5e+02 10 34 .. 653 684 .. 644 688 .. 0.67 5 ! 12.9 0.0 0.0018 0.15 4 35 .. 696 728 .. 693 729 .. 0.84 6 ! 25.2 0.1 2.2e-07 1.9e-05 3 37 .. 746 785 .. 744 786 .] 0.89 Alignments for each domain: == domain 1 score: 30.6 bits; conditional E-value: 4.6e-09 EESSSS.EEEEEEETTSSEEEEEETTSEEEEE CS WD40 7 ltGHss.vtslafspdgawlasGsdDgtvriW 37 ++GH+ v+ ++++ g+wlasGsdDg vriW tr|F6YXI8|F6YXI8_CIOIN 415 YRGHQAmVRTISVDTTGQWLASGSDDGVVRIW 446 89**668************************* PP == domain 2 score: 1.7 bits; conditional E-value: 6 SS.SSEEEEEEETTSSEEEE CS WD40 9 GH.ssvtslafspdgawlas 27 +H + v+ + ++ g+++a+ tr|F6YXI8|F6YXI8_CIOIN 566 THpKAVSKVTWHAKGDYFAA 585 79899****99999999874 PP == domain 3 score: 5.7 bits; conditional E-value: 0.33 EEEESSSSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 5 rtltGHssvtslafspdgawlasGsdDgtvriWd 38 +++G v s+ f+p+ ++++ ++ + vr+++ tr|F6YXI8|F6YXI8_CIOIN 610 SKCKGA--VQSVLFHPNRPFFFVAT-QQYVRVYN 640 555666..9***********99999.*****997 PP == domain 4 score: 1.4 bits; conditional E-value: 7.7 S.SSEEEEEEETTSSE......EEEEETTSEE CS WD40 10 H.ssvtslafspdgaw......lasGsdDgtv 34 ++++s+a +p + l+ Gs+D+ + tr|F6YXI8|F6YXI8_CIOIN 653 NaKWISSIAIHPGALYkhtgdnLIVGSYDCRL 684 4467899996666655555555888*999987 PP == domain 5 score: 12.9 bits; conditional E-value: 0.0018 EEEEESSSS.EEEEEEETTSSEEEEEETTSEEE CS WD40 4 lrtltGHss.vtslafspdgawlasGsdDgtvr 35 rt + H+ +++++f++ +++as++dDg++ tr|F6YXI8|F6YXI8_CIOIN 696 YRTMRYHKRaIRACCFHRKYPLFASAGDDGSIV 728 5677779555*********************97 PP == domain 6 score: 25.2 bits; conditional E-value: 2.2e-07 EEEEEESS.SS....EEEEEEETTSSEEEEEETTSEEEEE CS WD40 3 clrtltGH.ss....vtslafspdgawlasGsdDgtvriW 37 ++++l+GH + v +++f+p+++w++s+ D+t+r++ tr|F6YXI8|F6YXI8_CIOIN 746 PVKVLKGHkVDrnlgVLDCCFHPHQPWIFSSAADNTIRLF 785 7899****855799***************9988*****97 PP >> tr|F6TIU3|F6TIU3_CIOIN Eukaryotic translation initiation factor 3 subunit I OS=Ciona intestinalis OX=7719 GN=LOC1001 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.6 0.0 0.17 15 7 37 .. 6 37 .. 3 37 .. 0.86 2 ! 22.3 1.2 1.9e-06 0.00016 2 38 .] 43 80 .. 42 80 .. 0.93 3 ? 6.4 0.1 0.2 17 22 38 .] 158 174 .. 147 174 .. 0.84 4 ! 14.2 0.0 0.00067 0.056 1 38 [] 179 217 .. 179 217 .. 0.93 5 ! 23.3 0.0 8.9e-07 7.5e-05 6 36 .. 281 312 .. 276 314 .. 0.89 Alignments for each domain: == domain 1 score: 6.6 bits; conditional E-value: 0.17 EESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 7 ltGH.ssvtslafspdgawlasGsdDgtvriW 37 l GH +t ++++++g++l++ +D t +W tr|F6TIU3|F6TIU3_CIOIN 6 LQGHeRAITQIRYNREGDLLFTVAKDATPNVW 37 78**666*************999989887777 PP == domain 2 score: 22.3 bits; conditional E-value: 1.9e-06 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 + l+t++GH + v+s++++ d++ +++G D ++++Wd tr|F6TIU3|F6TIU3_CIOIN 43 ERLGTYDGHrGTVWSVDVNWDSTKVLTGAADLSCKLWD 80 6789*****988****************99*******9 PP == domain 3 score: 6.4 bits; conditional E-value: 0.2 SSEEEEEETTSEEEEEE CS WD40 22 gawlasGsdDgtvriWd 38 + +l++G+dDgt Wd tr|F6TIU3|F6TIU3_CIOIN 158 NEYLITGHDDGTMAHWD 174 56799*******99998 PP == domain 4 score: 14.2 bits; conditional E-value: 0.00067 TEEEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 1 gqclrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 g++l++ + H+ + +++ s+d+ +l+++s+D+t +++d tr|F6TIU3|F6TIU3_CIOIN 179 GELLHSVREHTAlIKDMQLSSDQMMLITASKDKTAKLFD 217 6789******6679***********************98 PP == domain 5 score: 23.3 bits; conditional E-value: 8.9e-07 EEESS.SSEEEEEEETTSSEEEEEETTSEEEE CS WD40 6 tltGH.ssvtslafspdgawlasGsdDgtvri 36 +GH ++++slaf+p+g+ +sG++Dg vr+ tr|F6TIU3|F6TIU3_CIOIN 281 RVKGHfGPINSLAFHPNGNSYSSGGEDGFVRV 312 568**888************999*******98 PP >> tr|F7AV41|F7AV41_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.2 0.0 0.00034 0.028 14 38 .] 281 305 .. 270 305 .. 0.88 2 ? 10.5 0.0 0.01 0.85 3 38 .] 312 348 .. 310 348 .. 0.79 3 ? 9.5 0.0 0.021 1.8 20 38 .] 417 435 .. 400 435 .. 0.72 4 ! 23.7 0.1 6.9e-07 5.8e-05 6 38 .] 444 479 .. 439 479 .. 0.82 5 ? 2.5 0.0 3.5 2.9e+02 1 38 [] 483 521 .. 483 521 .. 0.76 6 ? 9.9 0.1 0.016 1.3 10 38 .] 542 570 .. 532 570 .. 0.83 7 ! 11.3 0.0 0.0055 0.47 5 37 .. 718 753 .. 715 754 .. 0.75 Alignments for each domain: == domain 1 score: 15.2 bits; conditional E-value: 0.00034 EEEEEETTSSEEEEEETTSEEEEEE CS WD40 14 tslafspdgawlasGsdDgtvriWd 38 ++++s++ + la+Gs D+ vriW+ tr|F7AV41|F7AV41_CIOIN 281 ECFDYSKSLNILATGSLDHLVRIWN 305 699999999***************8 PP == domain 2 score: 10.5 bits; conditional E-value: 0.01 EEEEEESS.SSEEEEE.EETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtsla.fspdgawlasGsdDgtvriWd 38 ++ +l GH ++++++ + +g+ ++ s+D +++Wd tr|F7AV41|F7AV41_CIOIN 312 PIVILQGHsTGICDVViNEAYGQI-VTYSKDAIIKVWD 348 677899**777**99855555555.6789********9 PP == domain 3 score: 9.5 bits; conditional E-value: 0.021 TTSSEEEEEETTSEEEEEE CS WD40 20 pdgawlasGsdDgtvriWd 38 p + ++++sdD tv +Wd tr|F7AV41|F7AV41_CIOIN 417 PLFHQIVTASDDSTVSVWD 435 33334899**********9 PP == domain 4 score: 23.7 bits; conditional E-value: 6.9e-07 EEE.SS.SS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 6 tlt.GH.ss.vtslafspdgawlasGsdDgtvriWd 38 t++ +H + +t+l+f++ + l++G +Dgt+++W+ tr|F7AV41|F7AV41_CIOIN 444 TFSnAHgQEeITCLSFDDTCRRLFTGARDGTIKVWS 479 4545885337*************************5 PP == domain 5 score: 2.5 bits; conditional E-value: 3.5 TEEEEEEESSSS.....EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 1 gqclrtltGHss.....vtslafspdgawlasGsdDgtvriWd 38 g+cl++l+ + vt++ +d + la ++++ + i+d tr|F7AV41|F7AV41_CIOIN 483 GNCLHELE---PleeaeVTGVLSFQDRTILA-VGWNRRIVIYD 521 57888886...233334999*8888888886.799***99998 PP == domain 6 score: 9.9 bits; conditional E-value: 0.016 S.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 10 H.ssvtslafspdgawlasGsdDgtvriWd 38 H +++ ++a +p + ++ ++s+Dg + +W+ tr|F7AV41|F7AV41_CIOIN 542 HqDDILAVAHCPPNLLV-TASYDGCIIVWN 570 65669999888888886.6777*******8 PP == domain 7 score: 11.3 bits; conditional E-value: 0.0055 EEEESS.SSEEEEE..EETTSSEEEEEETTSEEEEE CS WD40 5 rtltGH.ssvtsla..fspdgawlasGsdDgtvriW 37 +++++H s + s++ + +++l+++s D+t r+W tr|F7AV41|F7AV41_CIOIN 718 YKWKAHdSAIVSVDfiEHEFNKMLVTASTDKTARLW 753 67899*77799996664444555888988******* PP >> tr|Q4H3S8|Q4H3S8_CIOIN Cockayne syndrome 1 homolog OS=Ciona intestinalis OX=7719 GN=Ci-CKN1 PE=2 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.1 0.0 1.1 91 24 38 .] 60 74 .. 38 74 .. 0.75 2 ! 14.4 0.1 0.00058 0.049 15 38 .] 111 135 .. 99 135 .. 0.67 3 ? 1.4 0.3 7.4 6.3e+02 4 32 .. 150 173 .. 147 176 .. 0.63 4 ! 32.1 0.2 1.5e-09 1.3e-07 4 38 .] 185 221 .. 182 221 .. 0.90 5 ! 17.1 0.0 8.5e-05 0.0072 8 38 .] 248 279 .. 242 279 .. 0.88 6 ! 13.0 0.0 0.0016 0.14 3 38 .] 334 370 .. 332 370 .. 0.91 Alignments for each domain: == domain 1 score: 4.1 bits; conditional E-value: 1.1 E.EEEEETTSEEEEEE CS WD40 24 w.lasGsdDgtvriWd 38 + +++Gs D+++ i+d tr|Q4H3S8|Q4H3S8_CIOIN 60 YlICAGS-DKKITIYD 74 4245678.****9998 PP == domain 2 score: 14.4 bits; conditional E-value: 0.00058 EEE..EETTSSEEEEEETTSEEEEEE CS WD40 15 sla..fspdgawlasGsdDgtvriWd 38 s++ ++ g +++s+ Dgt++iWd tr|Q4H3S8|Q4H3S8_CIOIN 111 SIQwyPHDTGIFVTSAF-DGTIKIWD 135 55433345555666666.*******9 PP == domain 3 score: 1.4 bits; conditional E-value: 7.4 EEEEESS.SSEEEEEEETTSSEEEEEETTS CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDg 32 + + H s+++ + ++++a++s D+ tr|Q4H3S8|Q4H3S8_CIOIN 150 VIH-NHHlSPISTQ-----HSLIAAASADH 173 444.2468888444.....36688889787 PP == domain 4 score: 32.1 bits; conditional E-value: 1.5e-09 EEEEESS.SSEEEEEEETTSSEE.EEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawl.asGsdDgtvriWd 38 +tl+GH + v ++++sp ++ asGs+D+ v +Wd tr|Q4H3S8|Q4H3S8_CIOIN 185 SHTLKGHrDTVLCVKWSPKDEYVlASGSEDNRVLLWD 221 69*****888************63699*********9 PP == domain 5 score: 17.1 bits; conditional E-value: 8.5e-05 ESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 8 tGH.ssvtslafspdgawlasGsdDgtvriWd 38 t+H +sv+s+ fs dg++l++ D+ +++W+ tr|Q4H3S8|Q4H3S8_CIOIN 248 TAHtGSVNSILFSEDGRYLLTFATDQRLHLWN 279 79*888*************98555*******8 PP == domain 6 score: 13.0 bits; conditional E-value: 0.0016 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +lr l GH s+v+++ ++p+ + l s++ +v iW+ tr|Q4H3S8|Q4H3S8_CIOIN 334 HLRRLAGHfSDVRCCEYNPYRQELYSAGQTSNVLIWS 370 678899**999*****************999999995 PP >> tr|F6Y9U9|F6Y9U9_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.8 0.0 0.32 27 12 34 .. 5 27 .. 2 29 .. 0.81 2 ! 20.5 0.2 6.7e-06 0.00057 3 38 .] 53 89 .. 51 89 .. 0.91 3 ? 3.5 0.0 1.6 1.4e+02 6 34 .. 103 135 .. 99 136 .. 0.58 4 ! 14.9 0.1 0.00042 0.035 4 38 .] 146 180 .. 144 180 .. 0.87 5 ? 5.7 0.1 0.32 27 13 38 .] 202 228 .. 184 228 .. 0.77 6 ! 16.5 0.0 0.00013 0.011 1 36 [. 232 269 .. 232 271 .. 0.84 7 ! 16.4 0.2 0.00014 0.012 10 37 .. 288 316 .. 281 317 .. 0.86 Alignments for each domain: == domain 1 score: 5.8 bits; conditional E-value: 0.32 SEEEEEEETTSSEEEEEETTSEE CS WD40 12 svtslafspdgawlasGsdDgtv 34 ++++af+p g +a Gs + + tr|F6Y9U9|F6Y9U9_CIOIN 5 AIRAVAFHPRGEVFAVGSNSQIL 27 499**************955555 PP == domain 2 score: 20.5 bits; conditional E-value: 6.7e-06 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 c++ + H +s++s a+++dg++la++s D+ ++++d tr|F6Y9U9|F6Y9U9_CIOIN 53 CVKLPKVHkGSIYSTAWNDDGSMLATCSNDKLIKLFD 89 6777789*777************************98 PP == domain 3 score: 3.5 bits; conditional E-value: 1.6 EEESS.SSEEEEEEETTSSE...EE.EEETTSEE CS WD40 6 tltGH.ssvtslafspdgaw...la.sGsdDgtv 34 +lt H +v+++af + la +G D+ v tr|F6Y9U9|F6Y9U9_CIOIN 103 ELTHHnAPVRDVAFLTNYGSacvLAnAGA-DCIV 135 67888666****75444333333443344.7765 PP == domain 4 score: 14.9 bits; conditional E-value: 0.00042 EEEEESS.SSEEEEEEETTSSE....EEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgaw....lasGsdDgtvriWd 38 l++l+GH v sl aw l+s s D++vr Wd tr|F6Y9U9|F6Y9U9_CIOIN 146 LHKLSGHsEQVLSL-----YAWgsgmLVSTSQDKSVRTWD 180 799****555****.....888888888999********9 PP == domain 5 score: 5.7 bits; conditional E-value: 0.32 E.EEEEEETTSSEEEEEETTSEEEEEE CS WD40 13 v.tslafspdgawlasGsdDgtvriWd 38 v s++++ g+++a G D+ + i+d tr|F6Y9U9|F6Y9U9_CIOIN 202 VaASVCVDTRGRYMAVGRTDNMISIYD 228 6568999**********77******98 PP == domain 6 score: 16.5 bits; conditional E-value: 0.00013 TEEEEEEESS.SSEEEEEEETTSSEEE.EEETTSEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgawla.sGsdDgtvri 36 g+ ++t+ +H + v+s++f+p + ++ sGs+Dgt ++ tr|F6Y9U9|F6Y9U9_CIOIN 232 GKIIKTYQAHnNEVRSVRFNPVCPSVLlSGSYDGTAYV 269 57899*****777****99999999644******9765 PP == domain 7 score: 16.4 bits; conditional E-value: 0.00014 SSS.EEEEEEETTSSEEEEEETTSEEEEE CS WD40 10 Hss.vtslafspdgawlasGsdDgtvriW 37 H++ v ++++p+g+++a+ s D+t+ +W tr|F6Y9U9|F6Y9U9_CIOIN 288 HKDkVIQCRWHPSGRFFATTSADQTCVLW 316 745566889*********9999******* PP >> tr|F7B1X4|F7B1X4_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 12.8 0.0 0.0019 0.16 6 38 .] 247 280 .. 243 280 .. 0.84 2 ? 6.1 0.2 0.24 20 4 35 .. 287 317 .. 284 320 .. 0.79 3 ! 25.3 1.1 2.1e-07 1.7e-05 4 37 .. 328 362 .. 325 363 .. 0.90 4 ! 21.5 0.2 3.4e-06 0.00029 2 38 .] 368 408 .. 367 408 .. 0.81 5 ? 2.3 0.7 3.8 3.2e+02 2 29 .. 413 440 .. 412 451 .. 0.74 6 ! 19.9 0.0 1.1e-05 0.00092 7 38 .] 461 493 .. 455 493 .. 0.89 Alignments for each domain: == domain 1 score: 12.8 bits; conditional E-value: 0.0019 EEESSSS.EEEEEEETTSSEEEEE.ETTSEEEEEE CS WD40 6 tltGHss.vtslafspdgawlasG.sdDgtvriWd 38 t +G + v+s+++ pdg +a G s D v +Wd tr|F7B1X4|F7B1X4_CIOIN 247 TMEGENEyVSSVKWMPDGEHIAIGnS-DAEVQLWD 280 566664459***************66.*******9 PP == domain 2 score: 6.1 bits; conditional E-value: 0.24 EEEEESS.SSEEEEEEETTSSE....EEEEETTSEEE CS WD40 4 lrtltGH.ssvtslafspdgaw....lasGsdDgtvr 35 +r + H v+sl +w l+sGs Dg ++ tr|F7B1X4|F7B1X4_CIOIN 287 MRNMKSHaARVCSL------SWneyiLSSGSLDGFIH 317 5677899777****......777776889999*9886 PP == domain 3 score: 25.3 bits; conditional E-value: 2.1e-07 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 + tltGH + v++l +s+dg+ lasGs D+ v ++ tr|F7B1X4|F7B1X4_CIOIN 328 VATLTGHsQEVCGLEWSKDGHHLASGSNDNIVNVY 362 789****666*********************9987 PP == domain 4 score: 21.5 bits; conditional E-value: 3.4e-06 EEEEEEESS.SSEEEEEEETTSSE.EEEE..ETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgaw.lasG..sdDgtvriWd 38 ++++++t H s v ++a++p ++ lasG s D+++r+W+ tr|F7B1X4|F7B1X4_CIOIN 368 KPMYSFTDHqSAVKAIAWCPWQSNvLASGggSADRHIRFWN 408 6899*****888****88888888446765468*******8 PP == domain 5 score: 2.3 bits; conditional E-value: 3.8 EEEEEEESSSSEEEEEEETTSSEEEEEE CS WD40 2 qclrtltGHssvtslafspdgawlasGs 29 +c+++ ++ s v++l++s + + ++s++ tr|F7B1X4|F7B1X4_CIOIN 413 SCIKSVDTKSQVCALKWSTHYKEIVSSH 440 68888876667*******9999999875 PP == domain 6 score: 19.9 bits; conditional E-value: 1.1e-05 EESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 7 ltGH.ssvtslafspdgawlasGsdDgtvriWd 38 l GH s v la spdg+ ++sG D ++r+Wd tr|F7B1X4|F7B1X4_CIOIN 461 LMGHtSRVLYLAMSPDGQTVCSGAADESLRLWD 493 559*777*9**************99*******9 PP >> tr|F6XCG6|F6XCG6_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 GN=LOC100186454 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.9 0.0 5.4 4.5e+02 9 37 .. 61 87 .. 50 88 .. 0.74 2 ? 8.1 0.6 0.059 5 4 37 .. 94 126 .. 91 127 .. 0.88 3 ! 11.8 0.1 0.004 0.34 12 38 .] 231 258 .. 222 258 .. 0.88 4 ! 11.0 0.0 0.0069 0.58 9 37 .. 271 300 .. 262 300 .. 0.88 5 ! 11.9 0.0 0.0036 0.3 2 37 .. 310 345 .. 309 346 .. 0.86 6 ? 2.8 0.1 2.8 2.3e+02 2 24 .. 435 456 .. 434 468 .. 0.71 7 ! 28.4 2.8 2.2e-08 1.9e-06 2 38 .] 569 606 .. 568 606 .. 0.89 8 ? 8.3 0.3 0.049 4.1 12 37 .. 621 647 .. 612 648 .. 0.88 Alignments for each domain: == domain 1 score: 1.9 bits; conditional E-value: 5.4 SS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 9 GH.ssvtslafspdgawlasGsdDgtvriW 37 H +++ ++a++ + ++ +G+ + vr++ tr|F6XCG6|F6XCG6_CIOIN 61 SHpQDIECIAVD--SFLVYTGC-QNVVRVF 87 688889999654..33455999.9999986 PP == domain 2 score: 8.1 bits; conditional E-value: 0.059 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 +tl+GH s+v +l +p g+ l+s ++ + v+iW tr|F6XCG6|F6XCG6_CIOIN 94 KYTLEGHtSDV-HL-IHPLGKHLISVDKSNCVKIW 126 57999**999*.66.7********99********* PP == domain 3 score: 11.8 bits; conditional E-value: 0.004 SEEEEEEETTSSE.EEEEETTSEEEEEE CS WD40 12 svtslafspdgaw.lasGsdDgtvriWd 38 +vt+++f dg+ +a+G+ g++ +Wd tr|F6XCG6|F6XCG6_CIOIN 231 PVTCISFLTDGSStMATGTVSGHICLWD 258 5*****9999999889***********9 PP == domain 4 score: 11.0 bits; conditional E-value: 0.0069 SS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 9 GH.ssvtslafspdgawlasGsdDgtvriW 37 +H sv +l f p+++++++ D+t++iW tr|F6XCG6|F6XCG6_CIOIN 271 AHaASVAGLTFIPSQPLMVTNAADNTIKIW 300 79888************998666******* PP == domain 5 score: 11.9 bits; conditional E-value: 0.0036 EEEEEEESS.SS.EEEEEEETTSSEEEEEETTSEEEEE CS WD40 2 qclrtltGH.ss.vtslafspdgawlasGsdDgtvriW 37 ++lr+ +GH ++ v ++f+++ + ++sG D t+r++ tr|F6XCG6|F6XCG6_CIOIN 310 RLLRERSGHyGPpV-KVRFHDETSVISSGY-DSTIRLF 345 6788889**98867.**********98888.*****97 PP == domain 6 score: 2.8 bits; conditional E-value: 2.8 EEEEEEESSSSEEEEEEETTSSE CS WD40 2 qclrtltGHssvtslafspdgaw 24 ++l +++ H +vts+a g++ tr|F6XCG6|F6XCG6_CIOIN 435 KKLVSFKNH-HVTSVALTACGNF 456 567789999.9****76666666 PP == domain 7 score: 28.4 bits; conditional E-value: 2.2e-08 EEEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 + +r +t H++ +++l++s+d +wl+++s D+tvr Wd tr|F6XCG6|F6XCG6_CIOIN 569 KVVRNFTHHTGvINDLCWSSDARWLITASSDCTVRTWD 606 6789999997757*************9988*******9 PP == domain 8 score: 8.3 bits; conditional E-value: 0.049 SEEEEEEETTSSEEEEEE.TTSEEEEE CS WD40 12 svtslafspdgawlasGs.dDgtvriW 37 vtsl sp+ ++la+++ dD v+iW tr|F6XCG6|F6XCG6_CIOIN 621 AVTSLNLSPNCDMLATSHvDDLGVYIW 647 59***************8679999999 PP >> tr|F6ZUD0|F6ZUD0_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 GN=LOC100186469 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.4 0.0 0.00058 0.049 12 38 .] 22 49 .. 12 49 .. 0.84 2 ? 8.5 0.2 0.043 3.7 9 38 .] 60 89 .. 52 89 .. 0.73 3 ! 28.1 0.4 2.7e-08 2.3e-06 10 38 .] 101 130 .. 94 130 .. 0.92 4 ? 2.8 0.3 2.7 2.3e+02 19 38 .] 150 169 .. 132 169 .. 0.69 5 ! 17.3 0.0 7.3e-05 0.0062 10 38 .] 239 268 .. 222 268 .. 0.82 6 ? 8.5 0.0 0.042 3.5 8 29 .. 277 301 .. 270 306 .. 0.79 Alignments for each domain: == domain 1 score: 14.4 bits; conditional E-value: 0.00058 SEEEEEEETTSSE.EEEEETTSEEEEEE CS WD40 12 svtslafspdgaw.lasGsdDgtvriWd 38 +++s++fsp+ + l+++s+D +vr++d tr|F6ZUD0|F6ZUD0_CIOIN 22 GISSVKFSPSTSQfLLASSWDMSVRLYD 49 499***999999954699********98 PP == domain 2 score: 8.5 bits; conditional E-value: 0.043 SS.SSEEEEE.EETTSSEEEEEETTSEEEEEE CS WD40 9 GH.ssvtsla.fspdgawlasGsdDgtvriWd 38 H s+v +++ ++ ++w sG+ Dg+v+++d tr|F6ZUD0|F6ZUD0_CIOIN 60 EHkSPVLDCCfSDSVHSW--SGGLDGSVMMYD 89 697779877745555566..8*99******98 PP == domain 3 score: 28.1 bits; conditional E-value: 2.7e-08 S.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 10 H.ssvtslafspdgawlasGsdDgtvriWd 38 H +s++++ +++d + +++Gs+D+t+++Wd tr|F6ZUD0|F6ZUD0_CIOIN 101 HnNSIRCVEYCSDTNVVVTGSWDQTIKLWD 130 9899*************************9 PP == domain 4 score: 2.8 bits; conditional E-value: 2.7 ETTSSEEEEEETTSEEEEEE CS WD40 19 spdgawlasGsdDgtvriWd 38 s g+ ++ G+ ++v +Wd tr|F6ZUD0|F6ZUD0_CIOIN 150 SVCGDHIIVGTCGKSVVVWD 169 557788888966*******9 PP == domain 5 score: 17.3 bits; conditional E-value: 7.3e-05 S.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 10 H.ssvtslafspdgawlasGsdDgtvriWd 38 H sv+++af++ + +a+G+ Dg v +Wd tr|F6ZUD0|F6ZUD0_CIOIN 239 HiYSVHAIAFHQRYSTFATGGADGYVNMWD 268 544599999********************9 PP == domain 6 score: 8.5 bits; conditional E-value: 0.042 ESS.SS..EEEEEEETTSSEEEEEE CS WD40 8 tGH.ss..vtslafspdgawlasGs 29 H ++ v+slafs dg++la +s tr|F6ZUD0|F6ZUD0_CIOIN 277 QFHlFPaaVSSLAFSNDGSMLAVAS 301 45775566************98665 PP >> tr|F6YFF3|F6YFF3_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 13.0 0.1 0.0016 0.14 10 38 .] 334 361 .. 325 361 .. 0.91 2 ! 13.4 0.0 0.0012 0.1 2 38 .] 367 404 .. 366 404 .. 0.89 3 ! 19.9 0.1 1.1e-05 0.0009 2 38 .] 495 534 .. 494 534 .. 0.83 4 ? 10.4 0.0 0.011 0.91 10 38 .] 596 624 .. 591 624 .. 0.74 5 ? 8.1 0.0 0.057 4.8 17 38 .] 728 750 .. 711 750 .. 0.68 6 ! 12.7 1.3 0.0021 0.17 4 38 .] 770 807 .. 768 807 .. 0.76 Alignments for each domain: == domain 1 score: 13.0 bits; conditional E-value: 0.0016 SSSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 10 HssvtslafspdgawlasGsdDgtvriWd 38 H +v+++++++ +++a+Gs ++ v +W+ tr|F6YFF3|F6YFF3_CIOIN 334 H-GVHCFDYHQQMNLIATGSVNHQVCLWN 361 6.7*************************8 PP == domain 2 score: 13.4 bits; conditional E-value: 0.0012 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +++++ltGH v + ++ +++ l+s s+D+ +riWd tr|F6YFF3|F6YFF3_CIOIN 367 KPVGILTGHmAAVIQVIVNVNKSQLMSFSKDKVLRIWD 404 7899*****999778888889999**88*********9 PP == domain 3 score: 19.9 bits; conditional E-value: 1.1e-05 EEEEEEE.SS.SS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtlt.GH.ss.vtslafspdgawlasGsdDgtvriWd 38 q+++ +t H + +t l +++ + l++Gs Dgt+++Wd tr|F6YFF3|F6YFF3_CIOIN 495 QKVKQFTnCHgQAeITTLELDHSRTRLFTGSTDGTIKVWD 534 66677766785336*************************9 PP == domain 4 score: 10.4 bits; conditional E-value: 0.011 S.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 10 H.ssvtslafspdgawlasGsdDgtvriWd 38 H +++ a++p + + a+Gs+Dg + iW+ tr|F6YFF3|F6YFF3_CIOIN 596 HqDDILTAAYNPPSML-ATGSYDGEIVIWN 624 6555655556666555.89**********8 PP == domain 5 score: 8.1 bits; conditional E-value: 0.057 E.EETTSSEEEEEETTSEEEEEE CS WD40 17 a.fspdgawlasGsdDgtvriWd 38 a ++p+ ++l++++ Dg ++W+ tr|F6YFF3|F6YFF3_CIOIN 728 AnTDPEDKYLITADSDGAMKVWN 750 2379*********66*******8 PP == domain 6 score: 12.7 bits; conditional E-value: 0.0021 EEEEESS.SSEEEEE.EETTSSEEE.EEETTSEEEEEE CS WD40 4 lrtltGH.ssvtsla.fspdgawla.sGsdDgtvriWd 38 l ++ +H +++ts+ s++ ++l+ ++s D++v +Wd tr|F6YFF3|F6YFF3_CIOIN 770 LASWQAHsDCITSITiCSRNDRLLIiTSSSDCSVALWD 807 567889*555****9777777775446655*******9 PP >> tr|F7ART8|F7ART8_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 GN=LOC100176761 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.9 0.1 0.14 12 7 37 .. 38 70 .. 33 71 .. 0.73 2 ! 16.4 0.1 0.00014 0.012 7 38 .] 81 113 .. 75 113 .. 0.87 3 ? 7.3 0.4 0.1 8.7 16 38 .] 131 153 .. 117 153 .. 0.78 4 ! 13.6 0.1 0.001 0.088 8 36 .. 209 238 .. 198 240 .. 0.83 5 ? 5.0 0.0 0.56 48 11 38 .] 266 293 .. 259 293 .. 0.91 6 ? 9.4 0.3 0.022 1.8 10 37 .. 305 333 .. 297 333 .. 0.83 7 ! 20.7 0.0 6.1e-06 0.00052 5 37 .. 342 375 .. 338 375 .. 0.88 Alignments for each domain: == domain 1 score: 6.9 bits; conditional E-value: 0.14 EESS.SS..EEEEEEETTSSEEEEEETTSEEEEE CS WD40 7 ltGH.ss..vtslafspdgawlasGsdDgtvriW 37 +t H +s v + ++ g++ +sG++D t +W tr|F7ART8|F7ART8_CIOIN 38 FTQHkGSvfVVNV-DPKFGKYAVSGGEDDTAFVW 70 6778555443444.666788899*********** PP == domain 2 score: 16.4 bits; conditional E-value: 0.00014 EESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 7 ltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++G +svt+ +f++d++++a G++ g+v++W+ tr|F7ART8|F7ART8_CIOIN 81 CEGYtDSVTCARFNHDSTMVAVGDMAGNVKVWN 113 5677667****************99*******8 PP == domain 3 score: 7.3 bits; conditional E-value: 0.1 EEEETTSSEEEEEETTSEEEEEE CS WD40 16 lafspdgawlasGsdDgtvriWd 38 l ++p + l++G+ Dg + +W+ tr|F7ART8|F7ART8_CIOIN 131 LLWHPGAPVLLAGTHDGECWMWK 153 44***********88*******5 PP == domain 4 score: 13.6 bits; conditional E-value: 0.001 ESS.SSEEEEEEETTSSEEEEEETTSEEEE CS WD40 8 tGH.ssvtslafspdgawlasGsdDgtvri 36 + H s+v++la + dg+ +++G+ +g v++ tr|F7ART8|F7ART8_CIOIN 209 KSHpSCVNHLASDNDGHIVLAGCVNGMVKL 238 468777**********************98 PP == domain 5 score: 5.0 bits; conditional E-value: 0.56 SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 11 ssvtslafspdgawlasGsdDgtvriWd 38 +sv ++ fs+ ++ as+s ++++ iWd tr|F7ART8|F7ART8_CIOIN 266 NSVECVGFSSMLPLAASASLNNKLTIWD 293 469999999999999999*********9 PP == domain 6 score: 9.4 bits; conditional E-value: 0.022 S.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 10 H.ssvtslafspdgawlasGsdDgtvriW 37 H +v+ ++++ g+ + +G+ Dg +r+W tr|F7ART8|F7ART8_CIOIN 305 HpAGVSVMSWNNRGSSIYTGCLDGVCRLW 333 65668888899****************** PP == domain 7 score: 20.7 bits; conditional E-value: 6.1e-06 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvriW 37 t+ GH + ++++a+ ++ ++++s+s Dg+vr++ tr|F7ART8|F7ART8_CIOIN 342 DTFVGHqGEIYDIAVTSNDDYFLSASADGSVRVY 375 5899**777*****9999999999999*****97 PP >> tr|Q1RPW9|Q1RPW9_CIOIN Zinc finger protein OS=Ciona intestinalis OX=7719 GN=Ci-ZF(FYVE)-1 PE=2 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.8 0.0 0.3 25 17 37 .. 31 52 .. 20 52 .. 0.80 2 ? 9.0 0.0 0.03 2.6 3 34 .. 107 139 .. 105 140 .. 0.87 3 ! 30.8 0.8 3.8e-09 3.2e-07 2 38 .] 191 228 .. 190 228 .. 0.92 4 ! 14.4 0.0 0.00058 0.049 6 38 .] 238 271 .. 233 271 .. 0.77 5 ! 11.5 0.1 0.0047 0.4 23 38 .] 381 395 .. 368 395 .. 0.80 Alignments for each domain: == domain 1 score: 5.8 bits; conditional E-value: 0.3 E.EETTSSEEEEEETTSEEEEE CS WD40 17 a.fspdgawlasGsdDgtvriW 37 a f p+ +++ s D+++riW tr|Q1RPW9|Q1RPW9_CIOIN 31 AvFTPNEEGIITVSIDKSIRIW 52 3488888889999********* PP == domain 2 score: 9.0 bits; conditional E-value: 0.03 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtv 34 ++r++ +H + vt++ f + + l+ +++D+ + tr|Q1RPW9|Q1RPW9_CIOIN 107 HQRKYLAHqKQVTGCIFTHQNEVLVVCGKDKYI 139 678999**999**9999999999999999*976 PP == domain 3 score: 30.8 bits; conditional E-value: 3.8e-09 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 q+++ l+GH +s+ +l+++p ++ l sGs D+++ +Wd tr|Q1RPW9|Q1RPW9_CIOIN 191 QLITQLKGHsGSIACLCWDPTHQILYSGSSDKSIIMWD 228 677889***777****************99*******9 PP == domain 4 score: 14.4 bits; conditional E-value: 0.00058 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 6 tltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +l GH s vtsl + ++ + l+s + Dg + +W+ tr|Q1RPW9|Q1RPW9_CIOIN 238 ELQGHtSKVTSLLYASHTQQLLSTGLDGMLVVWN 271 589**777****96666666655555*******8 PP == domain 5 score: 11.5 bits; conditional E-value: 0.0047 SEEEEEETTSEEEEEE CS WD40 23 awlasGsdDgtvriWd 38 ++++sG D+t+++Wd tr|Q1RPW9|Q1RPW9_CIOIN 381 RFVTSGN-DRTIKLWD 395 4566666.*******9 PP >> tr|F6X2C4|F6X2C4_CIOIN protein SEC13 homolog OS=Ciona intestinalis OX=7719 GN=LOC100182407 PE=3 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.1 0.0 0.014 1.2 13 37 .. 16 40 .. 6 41 .. 0.77 2 ! 22.6 0.1 1.5e-06 0.00013 2 38 .] 48 87 .. 47 87 .. 0.81 3 ! 18.1 0.3 4e-05 0.0033 1 36 [. 93 131 .. 93 131 .. 0.82 4 ? 7.3 0.1 0.1 8.8 22 37 .. 181 195 .. 140 196 .. 0.70 5 ! 14.6 0.1 0.0005 0.042 4 37 .. 205 243 .. 202 244 .. 0.82 6 ? 10.1 1.8 0.013 1.1 12 38 .] 263 290 .. 251 290 .. 0.81 Alignments for each domain: == domain 1 score: 10.1 bits; conditional E-value: 0.014 EEEEEEETTSSEEEEEETTSEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriW 37 +++ + + +g la++s D+t+ri+ tr|F6X2C4|F6X2C4_CIOIN 16 IHDAQMDYYGLQLATCSSDRTIRIF 40 566666667777999988******7 PP == domain 2 score: 22.6 bits; conditional E-value: 1.5e-06 EEEEEEESS.SSEEEEE..EETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtsla..fspdgawlasGsdDgtvriWd 38 ++l tl GH ++v+ +a +++ ++las+s+D++v iW+ tr|F6X2C4|F6X2C4_CIOIN 48 RLLSTLQGHdGPVWQIAwsHPKYDKMLASCSYDRKVIIWK 87 57899****888****765555555599***********6 PP == domain 3 score: 18.1 bits; conditional E-value: 4e-05 TEEEEEEESS.SSEEEEEEETTSSE..EEEEETTSEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgaw..lasGsdDgtvri 36 +++l+++ H ssv+s+++ p+ la+Gs Dg+v + tr|F6X2C4|F6X2C4_CIOIN 93 WNKLHEYNDHdSSVNSVCWAPHELGlmLACGSSDGSVSV 131 6899******999****8766666655689988***975 PP == domain 4 score: 7.3 bits; conditional E-value: 0.1 SSEEEEEETTSEEEEE CS WD40 22 gawlasGsdDgtvriW 37 ++++++G+ D+ v++W tr|F6X2C4|F6X2C4_CIOIN 181 KKFVSAGC-DNLVKVW 195 34588889.******* PP == domain 5 score: 14.6 bits; conditional E-value: 0.0005 EEEEESS.SSEEEEEEETTSSE..........EEEEETTSEEEEE CS WD40 4 lrtltGH.ssvtslafspdgaw..........lasGsdDgtvriW 37 ++l +H ++v+++ aw +as+s D+ v iW tr|F6X2C4|F6X2C4_CIOIN 205 EQKLQAHtDWVRDC------AWapsiglpqskIASCSQDRRVIIW 243 56789**777****......6666666699999************ PP == domain 6 score: 10.1 bits; conditional E-value: 0.013 S.EEEEEEETTSSEEE.EEETTSEEEEEE CS WD40 12 s.vtslafspdgawla.sGsdDgtvriWd 38 + v+++++s g+ la sG+ +++v +W+ tr|F6X2C4|F6X2C4_CIOIN 263 DvVWHVSWSLTGDILAvSGG-NNKVSLWK 290 457***********985888.*******6 PP >> tr|F6SIX8|F6SIX8_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.9 0.1 0.065 5.5 6 38 .] 195 229 .. 192 229 .. 0.76 2 ! 27.2 0.0 5.5e-08 4.6e-06 4 38 .] 240 276 .. 238 276 .. 0.89 3 ! 27.9 0.3 3.3e-08 2.8e-06 3 38 .] 285 321 .. 283 321 .. 0.94 4 ! 17.8 0.5 4.8e-05 0.0041 2 38 .] 329 367 .. 328 367 .. 0.82 Alignments for each domain: == domain 1 score: 7.9 bits; conditional E-value: 0.065 EEESS..SSEEEEEEETTSSE.EEEEETTSEEEEEE CS WD40 6 tltGH..ssvtslafspdgaw.lasGsdDgtvriWd 38 t+ GH + +l++sp+g+ l++G+ + ++++W+ tr|F6SIX8|F6SIX8_CIOIN 195 TFAGHmdEGF-ALDWSPSGNGqLLTGDCKSNIHLWK 229 6677764334.78888888888789*77*******6 PP == domain 2 score: 27.2 bits; conditional E-value: 5.5e-08 EEEEESS.SSEEEEEEETTSSEE.EEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawl.asGsdDgtvriWd 38 +r + +H sv +++sp+ + + as+s D+t+riWd tr|F6SIX8|F6SIX8_CIOIN 240 QRPFAAHsASVEEVQWSPNEKSVfASCSVDKTIRIWD 276 677899*777************846899********9 PP == domain 3 score: 27.9 bits; conditional E-value: 3.3e-08 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 c+ t ++H +v+ + ++++ ++++sG+dDg +++Wd tr|F6SIX8|F6SIX8_CIOIN 285 CMLTTKAHdADVNVMNWNKNDPFIVSGGDDGVIKVWD 321 888999**888*************************9 PP == domain 4 score: 17.8 bits; conditional E-value: 4.8e-05 EEEEEEESS.SSEEEEEEETTSSEE..EEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawl..asGsdDgtvriWd 38 + + +++ H s++ts+ ++p + + a+G+ D + Wd tr|F6SIX8|F6SIX8_CIOIN 329 KAIASFKHHtSPITSVEWHPTDKSIfaACGG-DDQLTQWD 367 567899*9*999************8434567.99999998 PP >> tr|F7ATG5|F7ATG5_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.8 0.2 3.3e-08 2.8e-06 6 38 .] 85 118 .. 81 118 .. 0.90 2 ? 2.9 0.0 2.4 2.1e+02 17 37 .. 141 163 .. 123 164 .. 0.75 3 ? 8.8 0.2 0.034 2.9 15 37 .. 236 258 .. 221 258 .. 0.85 4 ! 18.5 0.3 3e-05 0.0025 6 38 .] 276 309 .. 272 309 .. 0.94 5 ! 13.1 0.0 0.0015 0.12 9 37 .. 376 404 .. 368 405 .. 0.86 Alignments for each domain: == domain 1 score: 27.8 bits; conditional E-value: 3.3e-08 EEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 6 tltGHss.vtslafspdgawlasGsdDgtvriWd 38 tl+GHs+ v +l+ s +g+++as+sdD++vr+W+ tr|F7ATG5|F7ATG5_CIOIN 85 TLKGHSGkVLGLDASINGKYMASCSDDRSVRLWS 118 599**556*************************5 PP == domain 2 score: 2.9 bits; conditional E-value: 2.4 E.EETTSSEEEEE.ETTSEEEEE CS WD40 17 a.fspdgawlasG.sdDgtvriW 37 a fspd++ +++G +tvr++ tr|F7ATG5|F7ATG5_CIOIN 141 ArFSPDSRAFIAGlAVENTVRVF 163 159*******999878*****97 PP == domain 3 score: 8.8 bits; conditional E-value: 0.034 EEEEETTSSEEEEEETTSEEEEE CS WD40 15 slafspdgawlasGsdDgtvriW 37 + a+sp g+++as+++ + v++W tr|F7ATG5|F7ATG5_CIOIN 236 HAAVSPCGRFVASSGWTPDVKVW 258 5578******************* PP == domain 4 score: 18.5 bits; conditional E-value: 3e-05 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 6 tltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +l+GH +sv+s++f+ d++ +++ s+Dg+ r++d tr|F7ATG5|F7ATG5_CIOIN 276 ELKGHtTSVWSFDFNNDSTRMVTVSKDGSWRFYD 309 689**999***********************998 PP == domain 5 score: 13.1 bits; conditional E-value: 0.0015 SSSS.EEEEEEETTSSEEEEEETTSEEEEE CS WD40 9 GHss.vtslafspdgawlasGsdDgtvriW 37 Hs ++sl f+ g++++s++ D+++ri+ tr|F7ATG5|F7ATG5_CIOIN 376 VHSEiISSLIFDIAGRYILSSG-DKHIRIF 404 685557*************999.*****97 PP >> tr|F7ABS5|F7ABS5_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.5 0.1 7.7e-07 6.5e-05 2 38 .] 43 82 .. 42 82 .. 0.86 2 ? 6.0 0.0 0.26 22 5 38 .] 91 128 .. 88 128 .. 0.79 3 ! 21.0 0.2 4.9e-06 0.00042 4 38 .] 360 395 .. 357 395 .. 0.91 4 ? 7.2 0.3 0.11 9.2 8 32 .. 447 472 .. 442 482 .. 0.77 5 ! 18.4 0.3 3.1e-05 0.0026 7 38 .] 644 677 .. 639 677 .. 0.87 Alignments for each domain: == domain 1 score: 23.5 bits; conditional E-value: 7.7e-07 EEEEEEESS.SSEEEEEEETTSSEEEEEET..TSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsd..DgtvriWd 38 +++++l GH +s+t++a s d++w+a+G++ v +Wd tr|F7ABS5|F7ABS5_CIOIN 43 NQQKILQGHgNSITCMACSEDKRWVATGDKgpGSCVILWD 82 67999****999***************9766677777776 PP == domain 2 score: 6.0 bits; conditional E-value: 0.26 EEEESS..SSEEEEEEETTSSEEE..EEETTSEEEEEE CS WD40 5 rtltGH..ssvtslafspdgawla..sGsdDgtvriWd 38 +++ H s+v +la s d ++++ s++ +tv iWd tr|F7ABS5|F7ABS5_CIOIN 91 TIFGIHdeSGVVALAMSTDAKYIVtvSATTPQTVSIWD 128 567789866699**********98224456*******9 PP == domain 3 score: 21.0 bits; conditional E-value: 4.9e-06 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 + +l+ H s v+++a sp ++w++ Gs+ g +++Wd tr|F7ABS5|F7ABS5_CIOIN 360 TNILKEHdSAVHAIAASPTKPWICIGSYSGILKVWD 395 567999*777*************************9 PP == domain 4 score: 7.2 bits; conditional E-value: 0.11 ESS..SS.EEEEEEETTSSEEEEEETTS CS WD40 8 tGH..ss.vtslafspdgawlasGsdDg 32 + H ++ +t++ fs+++++la++ Dg tr|F7ABS5|F7ABS5_CIOIN 447 SFHyaCDvITHCLFSHNSRYLATA--DG 472 5687555679999********985..44 PP == domain 5 score: 18.4 bits; conditional E-value: 3.1e-05 EESS.SSEEEEEEETTSSEEE.EEETTSEEEEEE CS WD40 7 ltGH.ssvtslafspdgawla.sGsdDgtvriWd 38 +H ++v+ la s dg++++ +G+ D tv++W+ tr|F7ABS5|F7ABS5_CIOIN 644 MIAHpNGVSRLACSNDGRFVFtAGGVDSTVHMWS 677 569*999************9736799*******5 PP >> tr|F6YNT4|F6YNT4_CIOIN Coronin OS=Ciona intestinalis OX=7719 PE=3 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.8 0.0 0.00022 0.018 7 38 .] 74 107 .. 67 107 .. 0.73 2 ? 4.0 0.1 1.2 97 14 36 .. 175 197 .. 166 199 .. 0.84 3 ? 7.8 0.1 0.074 6.2 12 37 .. 547 573 .. 515 574 .. 0.86 4 ! 22.2 0.1 2e-06 0.00017 5 38 .] 589 624 .. 585 624 .. 0.82 5 ! 22.8 0.0 1.3e-06 0.00011 4 38 .] 631 666 .. 628 666 .. 0.87 Alignments for each domain: == domain 1 score: 15.8 bits; conditional E-value: 0.00022 EESSSS.EEEEEEETTSSE.EEEEETTSEEEEEE CS WD40 7 ltGHss.vtslafspdgaw.lasGsdDgtvriWd 38 l +H + +t++ fsp + ++s+sdD tv+iW+ tr|F6YNT4|F6YNT4_CIOIN 74 LAAHAGiITDIEFSPFYHDtFLSASDDSTVKIWK 107 56894448***955555555779999*******6 PP == domain 2 score: 4.0 bits; conditional E-value: 1.2 EEEEEETTSSEEEEEETTSEEEE CS WD40 14 tslafspdgawlasGsdDgtvri 36 s+a+s dg+ +a+ s+++++ i tr|F6YNT4|F6YNT4_CIOIN 175 QSIAWSYDGKTIAATSKNKKLFI 197 6899********99998888765 PP == domain 3 score: 7.8 bits; conditional E-value: 0.074 SEEEEEEETTSSE.EEEEETTSEEEEE CS WD40 12 svtslafspdgaw.lasGsdDgtvriW 37 vt+++++p ++ +a G ++g++++W tr|F6YNT4|F6YNT4_CIOIN 547 AVTDMRWDPFNSHrIAVGLENGKIKVW 573 39999999999998889989******* PP == domain 4 score: 22.2 bits; conditional E-value: 2e-06 EEEESS.SSEEEEEEETTSSEE.EEEETTSEEEEEE CS WD40 5 rtltGH.ssvtslafspdgawl.asGsdDgtvriWd 38 +l+GH + v +++f+p + + as+s D t++iWd tr|F6YNT4|F6YNT4_CIOIN 589 FSLSGHyNKVICVRFHPLASGIlASASSDSTIKIWD 624 6899**99988**999999996256667*******9 PP == domain 5 score: 22.8 bits; conditional E-value: 1.3e-06 EEEEESS.SSEEEEEEETTSSEEEEE.ETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasG.sdDgtvriWd 38 tltGH + + +++s+dg+++a + ++D+++ri+d tr|F6YNT4|F6YNT4_CIOIN 631 CITLTGHeDEILNISWSSDGKYIA-SmCKDNKIRIYD 666 5689***777************97.6579*******8 PP >> tr|Q1RPU5|Q1RPU5_CIOIN Zinc finger protein OS=Ciona intestinalis OX=7719 GN=Ci-ZF(RING)-30 PE=2 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.4 0.1 0.4 34 12 38 .] 339 366 .. 314 366 .. 0.88 2 ? 8.3 1.0 0.049 4.1 13 38 .] 391 417 .. 381 417 .. 0.80 3 ! 17.9 0.1 4.5e-05 0.0038 1 38 [] 421 460 .. 421 460 .. 0.89 4 ? 9.0 0.1 0.03 2.5 12 38 .] 475 502 .. 466 502 .. 0.82 5 ! 11.7 0.0 0.0043 0.37 2 38 .] 508 544 .. 507 544 .. 0.81 6 ! 15.6 0.0 0.00025 0.021 3 37 .. 550 585 .. 548 585 .. 0.89 7 ? 6.3 0.0 0.21 18 12 36 .. 617 641 .. 606 641 .. 0.86 Alignments for each domain: == domain 1 score: 5.4 bits; conditional E-value: 0.4 S.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 12 s.vtslafspdgawlasGsdDgtvriWd 38 s v+s++f++d + +a ++ ++++++d tr|Q1RPU5|Q1RPU5_CIOIN 339 SiVSSIDFDKDCDHFAVAGVTKKIKVYD 366 4479***********98888*****998 PP == domain 2 score: 8.3 bits; conditional E-value: 0.049 EEEEE.EETTSSEEEEEETTSEEEEEE CS WD40 13 vtsla.fspdgawlasGsdDgtvriWd 38 ++s++ + +++wlas+++ g+v +Wd tr|Q1RPU5|Q1RPU5_CIOIN 391 ISSISwSHYHKSWLASSDYEGSVILWD 417 7888855666777*99989*******9 PP == domain 3 score: 17.9 bits; conditional E-value: 4.5e-05 TEEEEEEESS.SSEEEEE.EETTSSEEEEEETTSEEEEEE CS WD40 1 gqclrtltGH.ssvtsla.fspdgawlasGsdDgtvriWd 38 gq+ +++ H + +s++ +s d ++lasGsdD v++W+ tr|Q1RPU5|Q1RPU5_CIOIN 421 GQKNKVFQEHeKRCWSVDfNSVDPRLLASGSDDARVKLWS 460 57789999**99999999888899999************5 PP == domain 4 score: 9.0 bits; conditional E-value: 0.03 SEEEEEEETTSSEEEE.EETTSEEEEEE CS WD40 12 svtslafspdgawlas.GsdDgtvriWd 38 +v++++f+p++a++++ G+ D+ v+ +d tr|Q1RPU5|Q1RPU5_CIOIN 475 NVCCVQFNPHSAFHLAfGCADHFVHYYD 502 39***********7655778**998776 PP == domain 5 score: 11.7 bits; conditional E-value: 0.0043 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 q + +++GH + v s a d++ ++s+s D +r+W+ tr|Q1RPU5|Q1RPU5_CIOIN 508 QSVSVFRGHkKAV-SYAKFVDKDEIVSASTDSELRLWK 544 67889****8889.7776667777788888*******6 PP == domain 6 score: 15.6 bits; conditional E-value: 0.00025 EEEEEESS.SS...EEEEEEETTSSEEEEEETTSEEEEE CS WD40 3 clrtltGH.ss...vtslafspdgawlasGsdDgtvriW 37 c+r+++GH ++ v +l +g+++a+Gs++++++i+ tr|Q1RPU5|Q1RPU5_CIOIN 550 CVRSFRGHtNDknfV-GL--ATNGDYIACGSENNSLYIY 585 9*******9777777.88..88*************9996 PP == domain 7 score: 6.3 bits; conditional E-value: 0.21 SEEEEEEETTSSEEEEE.ETTSEEEE CS WD40 12 svtslafspdgawlasG.sdDgtvri 36 +v+++a+ +++ +a++ s gt++i tr|Q1RPU5|Q1RPU5_CIOIN 617 FVSAVAWRANSDIIAAAnS-QGTIKI 641 399************9966.****98 PP >> tr|F6RFI3|F6RFI3_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.3 0.2 0.024 2 14 38 .] 36 60 .. 19 60 .. 0.78 2 ! 13.6 0.0 0.0011 0.091 7 36 .. 70 100 .. 65 102 .. 0.81 3 ? 7.0 0.1 0.13 11 8 38 .] 164 195 .. 158 195 .. 0.62 4 ! 22.1 0.0 2.2e-06 0.00018 10 38 .] 206 238 .. 199 238 .. 0.86 5 ? 6.2 0.0 0.23 20 1 34 [. 242 275 .. 242 278 .. 0.68 6 ! 14.8 0.4 0.00042 0.036 9 38 .] 296 329 .. 290 329 .. 0.70 Alignments for each domain: == domain 1 score: 9.3 bits; conditional E-value: 0.024 EEEEEETTSSE..EEEEETTSEEEEEE CS WD40 14 tslafspdgaw..lasGsdDgtvriWd 38 +l + +++w +++Gs Dg vr W+ tr|F6RFI3|F6RFI3_CIOIN 36 LAL--DYSKDWniVVTGSFDGVVRTWN 60 555..5566667699***********8 PP == domain 2 score: 13.6 bits; conditional E-value: 0.0011 EESS.SSEEEEE.EETTSSEEEEEETTSEEEE CS WD40 7 ltGH.ssvtsla.fspdgawlasGsdDgtvri 36 ++GH ++v +++ + +g+ + ++++D+t+ri tr|F6RFI3|F6RFI3_CIOIN 70 IKGHlTPVQHVRiIQGSGQVI-TCGKDRTIRI 100 47*********9666666665.7999*****9 PP == domain 3 score: 7.0 bits; conditional E-value: 0.13 ESS.SSEEEEEEETTSSEEE.EEETTSEEEEEE CS WD40 8 tGH.ssvtslafspdgawla.sGsdDgtvriWd 38 + H ++v+ + +++ + ++ +G+ D + +Wd tr|F6RFI3|F6RFI3_CIOIN 164 KSHdGPVSTVLYNKLFNQVVtAGH-DSVLSVWD 195 567666766633333333551566.*******9 PP == domain 4 score: 22.1 bits; conditional E-value: 2.2e-06 S..SSE..EEEEEETTSSEEEEEETTSEEEEEE CS WD40 10 H..ssv..tslafspdgawlasGsdDgtvriWd 38 H ++v t+++f++ g+ l++Gs++g v+iW+ tr|F6RFI3|F6RFI3_CIOIN 206 HtiKGVelTCMCFDQTGRRLITGSRNGAVKIWN 238 65566555************************8 PP == domain 5 score: 6.2 bits; conditional E-value: 0.23 TEEEEEEESS.SS.EEEEEEETTSSE....EEEEETTSEE CS WD40 1 gqclrtltGH.ss.vtslafspdgaw....lasGsdDgtv 34 g clrtl+G + vt+l ++sG++++++ tr|F6RFI3|F6RFI3_CIOIN 242 GACLRTLSGAtNYeVTGL------VClkqkIISGGWNKKL 275 57********76697755......2222236789998876 PP == domain 6 score: 14.8 bits; conditional E-value: 0.00042 SS.SSEEEEE..EETTSSE.EEEEETTSEEEEEE CS WD40 9 GH.ssvtsla..fspdgaw.lasGsdDgtvriWd 38 +H +++ +la +++g +as+s+Dg + iW+ tr|F6RFI3|F6RFI3_CIOIN 296 AHkDDILCLAsfQHSNGVSiIASSSYDGDIFIWS 329 78566888886533333333678899*******5 PP >> tr|F6WD89|F6WD89_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 GN=groucho2 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 11.2 0.0 0.0059 0.5 10 38 .] 540 568 .. 533 568 .. 0.85 2 ? 7.2 0.0 0.11 9.1 13 38 .] 598 623 .. 587 623 .. 0.91 3 ! 14.2 0.1 0.00067 0.057 14 38 .] 643 667 .. 631 667 .. 0.85 4 ! 18.2 0.4 3.6e-05 0.003 3 38 .] 673 709 .. 671 709 .. 0.88 5 ? 4.9 0.0 0.57 48 12 35 .. 724 747 .. 713 748 .. 0.81 6 ! 12.0 0.1 0.0033 0.28 10 37 .. 762 790 .. 755 791 .. 0.86 7 ? 5.9 0.1 0.28 24 10 33 .. 801 827 .. 796 832 .. 0.79 Alignments for each domain: == domain 1 score: 11.2 bits; conditional E-value: 0.0059 SSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 10 Hss.vtslafspdgawlasGsdDgtvriWd 38 H+ v+++ +s + + +G+ +g v+iWd tr|F6WD89|F6WD89_CIOIN 540 HGEvVCAVTVSNPTRHVYTGG-KGCVKIWD 568 6444699999999999*****.*******9 PP == domain 2 score: 7.2 bits; conditional E-value: 0.11 EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriWd 38 ++s++ pdg+ l+ G++ t+ iWd tr|F6WD89|F6WD89_CIOIN 598 IRSCKLLPDGRTLLVGGEASTLSIWD 623 9999*********************9 PP == domain 3 score: 14.2 bits; conditional E-value: 0.00067 EEEEEETTSSEEEEEETTSEEEEEE CS WD40 14 tslafspdgawlasGsdDgtvriWd 38 ++la spd+++ +s++ Dg++ +Wd tr|F6WD89|F6WD89_CIOIN 643 YALAISPDSKLCFSCCSDGNIAVWD 667 6899*******887755*******9 PP == domain 4 score: 18.2 bits; conditional E-value: 3.6e-05 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +r + GH ++ ++++ spdg+ l +G+ D+tvr W+ tr|F6WD89|F6WD89_CIOIN 673 VIRQFQGHtDGASCIDISPDGTKLWTGGLDNTVRSWN 709 68899***7779***********747999*******8 PP == domain 5 score: 4.9 bits; conditional E-value: 0.57 SEEEEEEETTSSEEEEEETTSEEE CS WD40 12 svtslafspdgawlasGsdDgtvr 35 + sl ++p+g wl+ G+++ tv tr|F6WD89|F6WD89_CIOIN 724 QIFSLGYCPSGEWLTVGMENSTVE 747 3889999********9*9999986 PP == domain 6 score: 12.0 bits; conditional E-value: 0.0033 S.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 10 H.ssvtslafspdgawlasGsdDgtvriW 37 H s+v sl+f ++g+w++s ++D+ + W tr|F6WD89|F6WD89_CIOIN 762 HeSCVLSLKFAHSGKWFISTGKDNMLNSW 790 7778**************9999**99888 PP == domain 7 score: 5.9 bits; conditional E-value: 0.28 S...SSEEEEEEETTSSEEEEEETTSE CS WD40 10 H...ssvtslafspdgawlasGsdDgt 33 H ssv s++ s d +++++Gs D++ tr|F6WD89|F6WD89_CIOIN 801 HkesSSVLSCDISLDDRYIVTGSGDKK 827 76534499**************87986 PP >> tr|F6VRS6|F6VRS6_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.3 0.0 0.44 38 5 37 .. 71 104 .. 58 105 .. 0.75 2 ? 6.3 0.1 0.22 19 16 38 .] 126 150 .. 121 150 .. 0.86 3 ? 1.4 0.0 7.7 6.5e+02 13 38 .] 167 192 .. 157 192 .. 0.77 4 ? 5.0 0.0 0.55 46 9 37 .. 257 284 .. 249 285 .. 0.73 5 ? 9.9 0.1 0.016 1.3 4 38 .] 362 394 .. 359 394 .. 0.83 6 ! 19.5 0.0 1.5e-05 0.0012 4 37 .. 462 496 .. 459 497 .. 0.86 7 ? 1.8 0.0 5.8 4.9e+02 13 34 .. 515 539 .. 505 541 .. 0.77 8 ? 4.3 0.0 0.94 80 13 37 .. 701 725 .. 691 725 .. 0.87 9 ? 8.1 0.1 0.06 5 10 34 .. 749 777 .. 745 778 .. 0.82 Alignments for each domain: == domain 1 score: 5.3 bits; conditional E-value: 0.44 EEEESSSSEEEEEEETTSSEEEEE..ETTSEEEEE CS WD40 5 rtltGHssvtslafspdgawlasG..sdDgtvriW 37 r+++G ++ s+a +p+g+++a + ++++++ ++ tr|F6VRS6|F6VRS6_CIOIN 71 RSCSGG-GIGSIAIHPSGKYFAVAekGKKPHILVY 104 333333.478888********98877779988876 PP == domain 2 score: 6.3 bits; conditional E-value: 0.22 EEEETTSSEEEE.EET.TSEEEEEE CS WD40 16 lafspdgawlas.Gsd.DgtvriWd 38 ++fsp g++las Gs D + +Wd tr|F6VRS6|F6VRS6_CIOIN 126 VDFSPKGDLLASvGSApDYMLTVWD 150 78********9636768*******8 PP == domain 3 score: 1.4 bits; conditional E-value: 7.7 EEEEEEETTSSE.EEEEETTSEEEEEE CS WD40 13 vtslafspdgaw.lasGsdDgtvriWd 38 v+ + fsp++ l+s++ ++r+W+ tr|F6VRS6|F6VRS6_CIOIN 167 VYRVTFSPEQEGqLTSSG-TTHIRFWK 192 788888888888677777.*******5 PP == domain 4 score: 5.0 bits; conditional E-value: 0.55 SS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 9 GH.ssvtslafspdgawlasGsdDgtvriW 37 H +s+ l + ++g +++ G Dg vr+W tr|F6VRS6|F6VRS6_CIOIN 257 CHvGSIQQL-VIDEGELITIGL-DGYVRVW 284 565555444.777888898999.******* PP == domain 5 score: 9.9 bits; conditional E-value: 0.016 EEEEESSSSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGHssvtslafspdgawlasGsdDgtvriWd 38 l+++t +++ +la sp+++++a+ + D vri d tr|F6VRS6|F6VRS6_CIOIN 362 LHSFTS-GPIAGLASSPSSHLVATTG-DTFVRIHD 394 666652.25**************999.*****976 PP == domain 6 score: 19.5 bits; conditional E-value: 1.5e-05 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 +++ + H s +tslaf+ g la+Gs D+tv ++ tr|F6VRS6|F6VRS6_CIOIN 462 IQVMKPHsSTITSLAFDNTGEILATGSTDKTVFFF 496 567788*666*********************9765 PP == domain 7 score: 1.8 bits; conditional E-value: 5.8 EEEEE....EETTSSEEEEEETTSEE CS WD40 13 vtsla....fspdgawlasGsdDgtv 34 vt++ pd ++l+s+s +g+v tr|F6VRS6|F6VRS6_CIOIN 515 VTGMEwsppGFPDTTLLVSCS-NGKV 539 5555555556899999****9.8887 PP == domain 8 score: 4.3 bits; conditional E-value: 0.94 EEEEEEETTSSEEEEEETTSEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriW 37 ++ ++f d + l++G Dg +r++ tr|F6VRS6|F6VRS6_CIOIN 701 ISRISFTTDRRKLVAGFLDGMIRVY 725 889999**********99*****97 PP == domain 9 score: 8.1 bits; conditional E-value: 0.06 S.SS...EEEEEEETTSSEEEEEETTSEE CS WD40 10 H.ss...vtslafspdgawlasGsdDgtv 34 H ++ +t + s dga+l+sG+ Dg++ tr|F6VRS6|F6VRS6_CIOIN 749 HdNDtgsITNIVESYDGAYLFSGGSDGNI 777 544445599999999********88**98 PP >> tr|Q4H3F0|Q4H3F0_CIOIN Groucho OS=Ciona intestinalis OX=7719 GN=Ci-Groucho1 PE=2 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 11.2 0.0 0.006 0.51 10 38 .] 554 582 .. 547 582 .. 0.85 2 ? 4.0 0.0 1.1 94 13 38 .] 612 637 .. 601 637 .. 0.90 3 ! 14.2 0.1 0.00069 0.058 14 38 .] 656 680 .. 646 680 .. 0.86 4 ! 17.5 0.6 6.3e-05 0.0054 4 38 .] 687 722 .. 685 722 .. 0.89 5 ? 4.4 0.0 0.85 72 11 35 .. 736 760 .. 726 761 .. 0.80 6 ! 12.0 0.1 0.0034 0.28 10 37 .. 775 803 .. 768 804 .. 0.86 7 ? 7.8 0.1 0.069 5.9 11 33 .. 818 840 .. 809 845 .. 0.82 Alignments for each domain: == domain 1 score: 11.2 bits; conditional E-value: 0.006 SSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 10 Hss.vtslafspdgawlasGsdDgtvriWd 38 H+ v+++ +s + + +G+ +g v+iWd tr|Q4H3F0|Q4H3F0_CIOIN 554 HGEvVCAVTVSNPTRHVYTGG-KGCVKIWD 582 6444699999999999*****.*******9 PP == domain 2 score: 4.0 bits; conditional E-value: 1.1 EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriWd 38 ++s++ pd + l+ G++ t+ iWd tr|Q4H3F0|Q4H3F0_CIOIN 612 IRSCKLLPDRRTLLVGGEASTLSIWD 637 999999*******99**********9 PP == domain 3 score: 14.2 bits; conditional E-value: 0.00069 EEEEEETTSSEEEEEETTSEEEEEE CS WD40 14 tslafspdgawlasGsdDgtvriWd 38 ++la spd+++ +s++ Dg++ +Wd tr|Q4H3F0|Q4H3F0_CIOIN 656 YALAISPDSKLCFSCCSDGNIAVWD 680 6789*******887755*******9 PP == domain 4 score: 17.5 bits; conditional E-value: 6.3e-05 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +r + GH ++ ++++ spdg+ l +G+ D+tvr W+ tr|Q4H3F0|Q4H3F0_CIOIN 687 VRQFQGHtDGASCIDISPDGTKLWTGGLDNTVRSWN 722 7889***7779***********747999*******8 PP == domain 5 score: 4.4 bits; conditional E-value: 0.85 SSEEEEEEETTSSEEEEEETTSEEE CS WD40 11 ssvtslafspdgawlasGsdDgtvr 35 s + sl ++p +wla G+++ tv tr|Q4H3F0|Q4H3F0_CIOIN 736 SQIFSLGYCPTEDWLAVGMENSTVE 760 3388999***********9999996 PP == domain 6 score: 12.0 bits; conditional E-value: 0.0034 S.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 10 H.ssvtslafspdgawlasGsdDgtvriW 37 H s+v sl+f ++g+w++s ++D+ + W tr|Q4H3F0|Q4H3F0_CIOIN 775 HeSCVLSLKFAHSGKWFISTGKDNMLNSW 803 7778**************9999**99888 PP == domain 7 score: 7.8 bits; conditional E-value: 0.069 SSEEEEEEETTSSEEEEEETTSE CS WD40 11 ssvtslafspdgawlasGsdDgt 33 ssv s++ s+d +++++Gs D++ tr|Q4H3F0|Q4H3F0_CIOIN 818 SSVLSCDISSDDKYIVTGSGDKK 840 4699**************88986 PP >> tr|F6SS00|F6SS00_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.3 0.0 0.43 36 13 37 .. 95 113 .. 79 113 .. 0.72 2 ! 18.0 0.2 4.3e-05 0.0037 3 37 .. 219 259 .. 217 260 .. 0.78 3 ! 24.1 0.2 5.2e-07 4.4e-05 6 38 .] 332 365 .. 328 365 .. 0.86 4 ? 2.0 0.0 4.8 4e+02 2 38 .] 370 405 .. 369 405 .. 0.81 5 ! 20.2 0.3 8.9e-06 0.00075 3 38 .] 411 447 .. 409 447 .. 0.71 Alignments for each domain: == domain 1 score: 5.3 bits; conditional E-value: 0.43 EEEEEEETTSSEEEEEETTSEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriW 37 v +l ++l+ +s+Dg+++iW tr|F6SS00|F6SS00_CIOIN 95 VEHL------DLLVLASEDGNIYIW 113 4455......55543678******* PP == domain 2 score: 18.0 bits; conditional E-value: 4.3e-05 EEEEEESS.SSEEEEEEETTSSE.....EEEEETTSEEEEE CS WD40 3 clrtltGH.ssvtslafspdgaw.....lasGsdDgtvriW 37 c +l GH s+vt+la ++ + l+sG++D+ + iW tr|F6SS00|F6SS00_CIOIN 219 CKNVLLGHtSCVTALALVHNEELyastyLVSGGWDRRILIW 259 667788**888****944444445777799*********** PP == domain 3 score: 24.1 bits; conditional E-value: 5.2e-07 EEESS.SSEEEEE.EETTSSEEEEEETTSEEEEEE CS WD40 6 tltGH.ssvtsla.fspdgawlasGsdDgtvriWd 38 tl GH +t+++ ++ + +w+ +Gs+Dgtv+iW+ tr|F6SS00|F6SS00_CIOIN 332 TLQGHeLEITAVRwNHVYDKWI-TGSEDGTVKIWS 365 799**666****9999999997.7**********5 PP == domain 4 score: 2.0 bits; conditional E-value: 4.8 EEEEEEESSSSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGHssvtslafspdgawlasGsdDgtvriWd 38 +c rtl+++++v+ l+ ++ + ++++ + ++++d tr|F6SS00|F6SS00_CIOIN 370 TCERTLSTQGPVSTLCIDKVNGCIVTAV-ENIIKVYD 405 5889999998888888777777799888.99999998 PP == domain 5 score: 20.2 bits; conditional E-value: 8.9e-06 EEEEEESS.SSEEEEE.EETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtsla.fspdgawlasGsdDgtvriWd 38 +++t GH ++++ l + ++++ sGs+D+t+riW+ tr|F6SS00|F6SS00_CIOIN 411 LVQTNIGHtDNIRTLThVVERSQYI-SGSWDKTIRIWN 447 6777889965576664334444565.8**********8 PP >> tr|H2XTW5|H2XTW5_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.0 0.2 0.00078 0.066 6 38 .] 94 128 .. 90 128 .. 0.80 2 ! 24.6 0.0 3.5e-07 3e-05 5 38 .] 136 170 .. 132 170 .. 0.91 3 ! 14.8 0.1 0.00043 0.036 2 37 .. 175 212 .. 174 213 .. 0.83 4 ? 4.1 0.0 1.1 92 12 36 .. 297 320 .. 291 322 .. 0.84 5 ? 7.2 0.0 0.11 9.7 5 35 .. 373 404 .. 369 407 .. 0.73 Alignments for each domain: == domain 1 score: 14.0 bits; conditional E-value: 0.00078 EEE.SS.SSEEEEEEETTSSE.EEEEETTSEEEEEE CS WD40 6 tlt.GH.ssvtslafspdgaw.lasGsdDgtvriWd 38 t+ H +s+t l+ s++g + + s++ Dgt iWd tr|H2XTW5|H2XTW5_CIOIN 94 TFHnIHnKSITTLDISKEGGLgV-SACVDGTFNIWD 128 543358889************66.5666*******9 PP == domain 2 score: 24.6 bits; conditional E-value: 3.5e-07 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 r+l H + v+++ f p+g ++sG++D v+iW+ tr|H2XTW5|H2XTW5_CIOIN 136 RKLVSHvGEVNCCNFFPSGMVVMSGGMDTQVKIWS 170 567789888*************************5 PP == domain 3 score: 14.8 bits; conditional E-value: 0.00043 EEEEEEESS..SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 2 qclrtltGH..ssvtslafspdgawlasGsdDgtvriW 37 +c rtl G +++ sla g+ ++s+s+Dg++++W tr|H2XTW5|H2XTW5_CIOIN 175 TCARTLNGShkCGILSLAAVGRGRNIVSASRDGSLKLW 212 7889997554666****98888999999********** PP == domain 4 score: 4.1 bits; conditional E-value: 1.1 SEEEEEEETTSSEEEEE.ETTSEEEE CS WD40 12 svtslafspdgawlasG.sdDgtvri 36 v+++++ ++ +++ G + Dg++ + tr|H2XTW5|H2XTW5_CIOIN 297 AVNCCCYLDETILVV-GlH-DGSIVV 320 499**9999999987.*66.***976 PP == domain 5 score: 7.2 bits; conditional E-value: 0.11 EEEESS.SS.EEEEEEETTSSEEEEEETTSEEE CS WD40 5 rtltGH.ss.vtslafspdgawlasGsdDgtvr 35 ++ltG ++ v+ + + ++w++++s+Dg vr tr|H2XTW5|H2XTW5_CIOIN 373 YELTGPdCDpVYKV-NATKSNWVFTASRDGVVR 404 56677753345555.66689************9 PP >> tr|F6THM1|F6THM1_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.4 0.0 3.3e-05 0.0028 10 38 .] 130 160 .. 123 160 .. 0.88 2 ? 5.1 0.0 0.53 45 25 37 .. 249 261 .. 225 261 .. 0.74 3 ! 20.1 0.1 9.5e-06 0.0008 14 38 .] 287 311 .. 270 311 .. 0.90 4 ! 11.0 1.1 0.007 0.6 9 38 .] 325 357 .. 315 357 .. 0.73 5 ? 6.8 0.0 0.15 13 11 29 .. 375 393 .. 362 400 .. 0.82 6 ? 6.6 0.0 0.17 14 12 36 .. 425 448 .. 415 451 .. 0.86 Alignments for each domain: == domain 1 score: 18.4 bits; conditional E-value: 3.3e-05 S..SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 10 H..ssvtslafspdgawlasGsdDgtvriWd 38 H ++v+sla +p+ga l++Gs D r+Wd tr|F6THM1|F6THM1_CIOIN 130 HgtKPVSSLALDPSGARLVTGSHDFEMRFWD 160 55488****************99*******9 PP == domain 2 score: 5.1 bits; conditional E-value: 0.53 EEEEETTSEEEEE CS WD40 25 lasGsdDgtvriW 37 ++++s Dgt+r W tr|F6THM1|F6THM1_CIOIN 249 FLTCSNDGTIRTW 261 458999*****88 PP == domain 3 score: 20.1 bits; conditional E-value: 9.5e-06 EEEEEETTSSEEEEEETTSEEEEEE CS WD40 14 tslafspdgawlasGsdDgtvriWd 38 t++++s+dg++la+++ Dg++ +Wd tr|F6THM1|F6THM1_CIOIN 287 TCCCYSRDGKLLAAATNDGSISLWD 311 9************9999*******9 PP == domain 4 score: 11.0 bits; conditional E-value: 0.007 SS.SS..EEEEEEETTSSEEEE.EETTSEEEEEE CS WD40 9 GH.ss..vtslafspdgawlas.GsdDgtvriWd 38 +H s+ +s++f +d++ +++ G+ D tv++Wd tr|F6THM1|F6THM1_CIOIN 325 AHtSGsdTSSIRFAHDNKTFCTrGG-DDTVKLWD 357 5652234678899999999875599.*******9 PP == domain 5 score: 6.8 bits; conditional E-value: 0.15 SSEEEEEEETTSSEEEEEE CS WD40 11 ssvtslafspdgawlasGs 29 ++vt++ fsp+ ++l++G+ tr|F6THM1|F6THM1_CIOIN 375 FPVTDCIFSPNEKLLMTGT 393 459*9************94 PP == domain 6 score: 6.6 bits; conditional E-value: 0.17 SEEEEEEETTSSEEEEEETTSEEEE CS WD40 12 svtslafspdgawlasGsdDgtvri 36 +++l ++p + ++ G+ Dg+v+i tr|F6THM1|F6THM1_CIOIN 425 AIRCL-WHPKLNQIMVGTADGNVKI 448 39999.9999999999*99*****8 PP >> tr|F6QXK6|F6QXK6_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 GN=LOC100184954 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 13.5 0.3 0.0012 0.098 10 38 .] 13 41 .. 5 41 .. 0.86 2 ! 17.0 0.0 9e-05 0.0076 5 38 .] 99 133 .. 95 133 .. 0.85 3 ! 14.8 0.3 0.00044 0.037 6 38 .] 182 215 .. 178 215 .. 0.89 4 ! 12.5 0.0 0.0023 0.19 10 29 .. 227 247 .. 218 257 .. 0.80 5 ? 10.3 0.0 0.012 0.99 12 36 .. 270 294 .. 260 294 .. 0.84 6 ? 2.4 0.0 3.6 3e+02 13 37 .. 509 532 .. 492 532 .. 0.80 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 0.0012 S.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 10 H.ssvtslafspdgawlasGsdDgtvriWd 38 H vt++a+s+ +++G+ D+++ W+ tr|F6QXK6|F6QXK6_CIOIN 13 HtETVTCVAWSSADEVISTGD-DHKILKWN 41 7555************99888.****9997 PP == domain 2 score: 17.0 bits; conditional E-value: 9e-05 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++ ++H + v s ++s+dg+ l+++++Dg ++iW+ tr|F6QXK6|F6QXK6_CIOIN 99 KSVEAHkGAVLSGKWSKDGSALLTAGEDGQIKIWS 133 67789955599999********************5 PP == domain 3 score: 14.8 bits; conditional E-value: 0.00044 EEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 6 tltGHss.vtslafspdgawlasGsdDgtvriWd 38 t+++H++ v +++++ +++++sG++D++ +iWd tr|F6QXK6|F6QXK6_CIOIN 182 TWKAHDGiVLKVDWNSVNNLILSGGEDCKYKIWD 215 6789*5557************************9 PP == domain 4 score: 12.5 bits; conditional E-value: 0.0023 S.SSEEEEEEETTSSEEEEEE CS WD40 10 H.ssvtslafspdgawlasGs 29 H ++ts+++spdg++++ Gs tr|F6QXK6|F6QXK6_CIOIN 227 HdYPITSVSWSPDGNLFTVGS 247 7445*************9998 PP == domain 5 score: 10.3 bits; conditional E-value: 0.012 SEEEEEEETTSSEEEEEETTSEEEE CS WD40 12 svtslafspdgawlasGsdDgtvri 36 sv +a+s dg+ +a+++ Dg+v++ tr|F6QXK6|F6QXK6_CIOIN 270 SVFNVAWSMDGTQVAAACADGHVML 294 4999**********98888****86 PP == domain 6 score: 2.4 bits; conditional E-value: 3.6 EEEEEEETTSSEEEEEETTSEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriW 37 v sl+++++ + l +G +D ++ +W tr|F6QXK6|F6QXK6_CIOIN 509 VQSLKWNSNVNIL-CGLRDMKLLVW 532 899*999999998.6989******9 PP >> tr|H2XQ91|H2XQ91_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.6 0.0 0.019 1.6 3 36 .. 104 139 .. 102 141 .. 0.76 2 ! 23.7 0.2 6.8e-07 5.8e-05 1 37 [. 145 182 .. 145 182 .. 0.89 3 ? 10.1 1.7 0.013 1.1 3 34 .. 236 268 .. 234 272 .. 0.86 4 ? 10.2 0.1 0.012 1 2 36 .. 277 312 .. 276 314 .. 0.89 5 ! 19.0 1.0 2.1e-05 0.0018 6 38 .] 325 357 .. 319 357 .. 0.83 6 ? 1.5 0.0 7 5.9e+02 11 38 .] 372 398 .. 362 398 .. 0.83 7 ? 1.7 0.3 6.1 5.2e+02 13 38 .] 419 445 .. 410 445 .. 0.71 Alignments for each domain: == domain 1 score: 9.6 bits; conditional E-value: 0.019 EEEEEESS.SSEEEEEEETTSSEEE.EEETTSEEEE CS WD40 3 clrtltGH.ssvtslafspdgawla.sGsdDgtvri 36 +++++GH +++++++ s+ + +a s+s D++ ++ tr|H2XQ91|H2XQ91_CIOIN 104 AVQEFRGHkDGIWDVSSSQVNVNIAgSASADQKAKL 139 5789****666****988888888744467887765 PP == domain 2 score: 23.7 bits; conditional E-value: 6.8e-07 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 g+c+ t+ GH +sv++++f+p+ + ++ s D t +W tr|H2XQ91|H2XQ91_CIOIN 145 GECVATYHGHsGSVNCVRFHPERQVALTVSGDTTAQVW 182 68********777************776555****999 PP == domain 3 score: 10.1 bits; conditional E-value: 0.013 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtv 34 +l t H s+v ++++ dg ++++s+D+t tr|H2XQ91|H2XQ91_CIOIN 236 PLICVTCHtSPVVGCDWLMDGVHFVTASWDRTS 268 6677899*89999******************95 PP == domain 4 score: 10.2 bits; conditional E-value: 0.012 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvri 36 q+++tl+GH + t ++ ++ +++++++s+D t r+ tr|H2XQ91|H2XQ91_CIOIN 277 QTVQTLSGHdLPLTYVSAHSKQKLIVTSSKDATFRV 312 7899*****555999999***************998 PP == domain 5 score: 19.0 bits; conditional E-value: 2.1e-05 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 6 tltGH.ssvtslafspdgawlasGsdDgtvriWd 38 + GH +s++s f d + + s+sdD+ v++Wd tr|H2XQ91|H2XQ91_CIOIN 325 VGQGHtQSISSAVFTTDEKIV-SSSDDRCVKVWD 357 346**999*999999999997.6788*******9 PP == domain 6 score: 1.5 bits; conditional E-value: 7 SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 11 ssvtslafspdgawlasGsdDgtvriWd 38 s+v+ +++s+ g ++ +d++ +r++d tr|H2XQ91|H2XQ91_CIOIN 372 SPVNRISVSRRGVIVI-PHDNRQIRLYD 398 4689999999999987.99*******98 PP == domain 7 score: 1.7 bits; conditional E-value: 6.1 EEEEEEETTSSE.......EEEEETTSEEEEEE CS WD40 13 vtslafspdgaw.......lasGsdDgtvriWd 38 vt+ +w ++++++D+ + W+ tr|H2XQ91|H2XQ91_CIOIN 419 VTAA------TWvegatpsVLTCGWDKLIIGWN 445 5767......776666677789*****998776 PP >> tr|F6TSM0|F6TSM0_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.9 0.1 6.4e-08 5.4e-06 3 38 .] 50 86 .. 48 86 .. 0.91 2 ? 5.8 0.1 0.31 26 4 36 .. 95 131 .. 92 133 .. 0.69 3 ? 1.4 0.1 7.3 6.2e+02 15 34 .. 157 175 .. 142 176 .. 0.67 4 ? 2.6 0.1 3.1 2.6e+02 5 38 .] 247 284 .. 243 284 .. 0.67 5 ! 11.8 0.0 0.0038 0.32 4 37 .. 294 331 .. 291 332 .. 0.86 6 ? 8.6 0.0 0.039 3.3 13 37 .. 350 374 .. 338 374 .. 0.82 Alignments for each domain: == domain 1 score: 26.9 bits; conditional E-value: 6.4e-08 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++++l+ H ++v++l f+++g++lasGsdD +v++Wd tr|F6TSM0|F6TSM0_CIOIN 50 LQWKLEKHdGCVNALNFNQSGTLLASGSDDLHVMLWD 86 6788999*777*************************9 PP == domain 2 score: 5.8 bits; conditional E-value: 0.31 EEEE.ESS.SSEEEEE...EETTSSEEEEEETTSEEEE CS WD40 4 lrtl.tGH.ssvtsla...fspdgawlasGsdDgtvri 36 + ++ +GH s+v + ++ d++ + s+ +Dg vr+ tr|F6TSM0|F6TSM0_CIOIN 95 VISYdSGHrSNVFQAKflpNCGDSSVV-SSARDGQVRV 131 556635998889777666566666666.5667*****8 PP == domain 3 score: 1.4 bits; conditional E-value: 7.3 EEEEETTSSEEEEEETTSEE CS WD40 15 slafspdgawlasGsdDgtv 34 sl++ + +++l s+++Dg v tr|F6TSM0|F6TSM0_CIOIN 157 SLDVASRSTLL-SCGEDGVV 175 55566666666.6888*987 PP == domain 4 score: 2.6 bits; conditional E-value: 3.1 EEEESSSS....EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 5 rtltGHss....vtslafspdgawlasGsdDgtvriWd 38 ++l+ s+ +t+l ++ g+ l+++ D ++++d tr|F6TSM0|F6TSM0_CIOIN 247 HHLEDASNvkanITCLVYNWCGSELLCSYNDEDIYLFD 284 555533224456****8877777788777788888876 PP == domain 5 score: 11.8 bits; conditional E-value: 0.0038 EEEEESS.SS..EEEEE.EETTSSEEEEEETTSEEEEE CS WD40 4 lrtltGH.ss..vtsla.fspdgawlasGsdDgtvriW 37 ++ ++GH ++ v ++ + p + +++sGsd g++ +W tr|F6TSM0|F6TSM0_CIOIN 294 IKRYKGHrNNatVKGVNfYGPRSEFVVSGSDCGNIFFW 331 6789***966799***888999999*********9999 PP == domain 6 score: 8.6 bits; conditional E-value: 0.039 EEEEEEETTSSEEEEEETTSEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriW 37 v+ l +p+ + la+++ D+ v+iW tr|F6TSM0|F6TSM0_CIOIN 350 VNVLEPHPSFPILATSGLDHEVKIW 374 456668889999**9999******* PP >> tr|H2XRA7|H2XRA7_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.0 0.0 1.1e-06 9.5e-05 1 38 [] 25 61 .. 25 61 .. 0.91 2 ? 6.6 0.0 0.17 14 3 37 .. 68 101 .. 66 102 .. 0.69 3 ! 25.9 0.1 1.3e-07 1.1e-05 2 37 .. 107 141 .. 106 141 .. 0.89 Alignments for each domain: == domain 1 score: 23.0 bits; conditional E-value: 1.1e-06 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 g++l+tl+GH s+vt++ + +++++s+++Dg +++W+ tr|H2XRA7|H2XRA7_CIOIN 25 GELLKTLSGHmSPVTAV--VRQHKLIVSADRDGMIMLWS 61 6789*********9999..88889999***********5 PP == domain 2 score: 6.6 bits; conditional E-value: 0.17 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 ++ ++ +H + +++la s ++++++s D ++ W tr|H2XRA7|H2XRA7_CIOIN 68 PVESIQAHeKQINDLAISGG-RFFTASS-DMLIKEW 101 6778899*999****65433.4445556.8888766 PP == domain 3 score: 25.9 bits; conditional E-value: 1.3e-07 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 +c+r+l GH + vt++ ++l+++s+D +vr+W tr|H2XRA7|H2XRA7_CIOIN 107 RCVRVLQGHvNEVTGV--RCTARYLVTCSKDSSVRLW 141 79*******9999988..556778************* PP >> tr|F6YJE0|F6YJE0_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.8 0.1 2.7e-06 0.00023 3 38 .] 312 348 .. 310 348 .. 0.89 2 ! 17.2 0.3 7.7e-05 0.0065 4 38 .] 356 391 .. 353 391 .. 0.83 3 ? 9.3 0.0 0.025 2.1 2 34 .. 398 431 .. 397 435 .. 0.79 4 ? 1.1 0.0 9.4 8e+02 12 36 .. 465 489 .. 457 491 .. 0.72 5 ! 11.6 0.1 0.0047 0.39 13 38 .] 514 534 .. 495 534 .. 0.79 Alignments for each domain: == domain 1 score: 21.8 bits; conditional E-value: 2.7e-06 EEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 ++ l GH+ v+++++s d++ l+s+s Dgt +Wd tr|F6YJE0|F6YJE0_CIOIN 312 EMGALVGHQQlVYDIQWSNDSSKLVSASADGTAQVWD 348 567789**556*************************9 PP == domain 2 score: 17.2 bits; conditional E-value: 7.7e-05 EEEEESS.SSEEEEEEETTSSEEE.EEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawla.sGsdDgtvriWd 38 ++tl H s v+ +f+p ++++ +G++D+ +r+W+ tr|F6YJE0|F6YJE0_CIOIN 356 THTL-VHpSYVYTSSFHPTAQYIVaTGGYDCVIRVWS 391 6777.5978899999*******754999********5 PP == domain 3 score: 9.3 bits; conditional E-value: 0.025 EEEEEEESSSS.EEEEEEETTSSEEEEEETTSEE CS WD40 2 qclrtltGHss.vtslafspdgawlasGsdDgtv 34 q l++l+GH+s ++sl f+++g l s++ g v tr|F6YJE0|F6YJE0_CIOIN 398 QMLQELDGHKSlINSLVFDHSGLTLYSADSAGVV 431 56899****8879**********99987435555 PP == domain 4 score: 1.1 bits; conditional E-value: 9.4 SEEEEEEETTSSEEE.EEETTSEEEE CS WD40 12 svtslafspdgawla.sGsdDgtvri 36 ++++++++p ++ l+ + D t+r+ tr|F6YJE0|F6YJE0_CIOIN 465 CINCIQVHPRNNKLLlHCR-DSTIRM 489 3899997777777542667.999986 PP == domain 5 score: 11.6 bits; conditional E-value: 0.0047 EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriWd 38 ts+ g++++sGs+Dg+ ++W+ tr|F6YJE0|F6YJE0_CIOIN 514 LTSC-----GSFVISGSEDGSAYVWN 534 4555.....99**************8 PP >> tr|F6V4K8|F6V4K8_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.0 0.2 4.2e-05 0.0036 9 38 .] 11 41 .. 4 41 .. 0.83 2 ? 6.6 0.1 0.18 15 3 35 .. 89 119 .. 87 121 .. 0.88 3 ! 23.2 0.0 9.6e-07 8.1e-05 4 37 .. 128 162 .. 126 163 .. 0.93 4 ! 15.0 0.8 0.00039 0.033 14 38 .] 233 257 .. 217 257 .. 0.78 Alignments for each domain: == domain 1 score: 18.0 bits; conditional E-value: 4.2e-05 SS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 9 GH.ssvtslafspdgawlasGsdDgtvriWd 38 GH + t ++++++g+ l+s++ Dg+v+iW+ tr|F6V4K8|F6V4K8_CIOIN 11 GHsEGRTEVCYDHSGKHLVSCGFDGNVKIWK 41 77544588999********9999*******6 PP == domain 2 score: 6.6 bits; conditional E-value: 0.18 EEEEEESSSSEEEEEEETTSSEEEEEETTSEEE CS WD40 3 clrtltGHssvtslafspdgawlasGsdDgtvr 35 cl +tG vt+l++s +++a+Gs D ++ tr|F6V4K8|F6V4K8_CIOIN 89 CLVRFTGT--VTHLSVSETRKLVAAGSSDFDIK 119 66678888..****************8898886 PP == domain 3 score: 23.2 bits; conditional E-value: 9.6e-07 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 ++++ GH ++ s+a++p +las+s Dg+++iW tr|F6V4K8|F6V4K8_CIOIN 128 QKSYLGHqAPILSVAVDPMDEYLASSSCDGNLKIW 162 78999**888**************9988******* PP == domain 4 score: 15.0 bits; conditional E-value: 0.00039 EEEEEETTSSEEEEEETTSEEEEEE CS WD40 14 tslafspdgawlasGsdDgtvriWd 38 +++fs+ g++la++s Dg + +Wd tr|F6V4K8|F6V4K8_CIOIN 233 QCCSFSQCGRFLAAASADGWIVVWD 257 3888*********9999*******9 PP >> tr|F6S7I2|F6S7I2_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.1 0.1 0.00036 0.031 8 38 .] 18 47 .. 14 47 .. 0.91 2 ? 6.5 0.0 0.19 16 6 38 .] 59 99 .. 55 99 .. 0.66 3 ! 18.1 0.0 4.1e-05 0.0035 4 38 .] 446 488 .. 443 488 .. 0.77 4 ! 13.8 0.0 0.00088 0.075 9 37 .. 548 577 .. 540 578 .. 0.85 5 ? 8.6 0.0 0.039 3.3 12 37 .. 1365 1393 .. 1353 1393 .. 0.68 Alignments for each domain: == domain 1 score: 15.1 bits; conditional E-value: 0.00036 ESSSSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 8 tGHssvtslafspdgawlasGsdDgtvriWd 38 +H v+++ f pd + +++G++Dg + +Wd tr|F6S7I2|F6S7I2_CIOIN 18 PTH-RVSAVTFTPDFQNIVTGCRDGQLCVWD 47 568.8*************************9 PP == domain 2 score: 6.5 bits; conditional E-value: 0.19 EEESS.SS...EEEEE.....EETTSSEEEEEETTSEEEEEE CS WD40 6 tltGH.ss...vtsla.....fspdgawlasGsdDgtvriWd 38 ++ GH ss vt ++ +++ ++s+s +g v +Wd tr|F6S7I2|F6S7I2_CIOIN 59 IF-GHsSSvvsVTTVKndflmKEESKTHFVSASQKGEVCLWD 99 55.99666655566645555433334447899*********9 PP == domain 3 score: 18.1 bits; conditional E-value: 4.1e-05 EEEEESS.SSEEEEE...EETTSSE.........EEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtsla...fspdgaw.........lasGsdDgtvriWd 38 rtl+GH + vt+l l+sGs D +v +Wd tr|F6S7I2|F6S7I2_CIOIN 446 HRTLRGHrDRVTCLLypyQ-----EasnryspevLVSGSADFSVVVWD 488 589****888****75551.....034555777789***********9 PP == domain 4 score: 13.8 bits; conditional E-value: 0.00088 SS.SSEEEEEEETTSSEEE.EEETTSEEEEE CS WD40 9 GH.ssvtslafspdgawla.sGsdDgtvriW 37 H s++ ++++ p+ ++l+ ++s D++v +W tr|F6S7I2|F6S7I2_CIOIN 548 RHpSPIVAIRWRPEEDFLIiACS-DCSVFVW 577 5989999**********864889.******* PP == domain 5 score: 8.6 bits; conditional E-value: 0.039 S..EEEEEEETTSSEEE..EEETTSEEEEE CS WD40 12 s..vtslafspdgawla..sGsdDgtvriW 37 + +t+l+fsp+g++l+ s++ + + +W tr|F6S7I2|F6S7I2_CIOIN 1365 GgrITALCFSPEGKYLCvySAD-ENQLSFW 1393 245************8523444.7766666 PP >> tr|A0A1W3JJK5|A0A1W3JJK5_CIOIN WD repeat-containing protein WRAP73 OS=Ciona intestinalis OX=7719 GN=LOC100186388 PE= # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.2 0.0 0.98 83 16 28 .. 14 26 .. 10 33 .. 0.78 2 ? 7.3 0.0 0.1 8.5 12 37 .. 50 76 .. 39 87 .. 0.77 3 ? 4.0 0.2 1.2 99 13 37 .. 95 119 .. 79 120 .. 0.67 4 ? 4.6 0.0 0.74 63 15 30 .. 138 154 .. 127 164 .. 0.78 5 ? 2.0 0.0 5 4.3e+02 12 26 .. 180 194 .. 168 200 .. 0.72 6 ! 17.4 0.0 6.6e-05 0.0056 1 36 [. 211 249 .. 211 251 .. 0.91 7 ? 6.3 0.0 0.21 18 13 37 .. 329 355 .. 319 356 .. 0.70 8 ? 6.4 0.1 0.19 16 11 38 .] 370 397 .. 361 397 .. 0.85 9 ? 6.1 0.0 0.24 20 10 26 .. 413 427 .. 405 437 .. 0.81 Alignments for each domain: == domain 1 score: 4.2 bits; conditional E-value: 0.98 EEEETTSSEEEEE CS WD40 16 lafspdgawlasG 28 ++fspdg++la + tr|A0A1W3JJK5|A0A1W3JJK5_CIOIN 14 VRFSPDGNYLANC 26 56********966 PP == domain 2 score: 7.3 bits; conditional E-value: 0.1 SEEEEEEETTSSEEEEEE.TTSEEEEE CS WD40 12 svtslafspdgawlasGs.dDgtvriW 37 v sl +s+d+++l++++ + g v iW tr|A0A1W3JJK5|A0A1W3JJK5_CIOIN 50 AVQSLEWSSDSQFLLCAMyKRGLVQIW 76 488999*********985256666666 PP == domain 3 score: 4.0 bits; conditional E-value: 1.2 EEEEEEETTSSEEE.EEETTSEEEEE CS WD40 13 vtslafspdgawla.sGsdDgtvriW 37 ++++ +spdg+ ++ ++s + + +W tr|A0A1W3JJK5|A0A1W3JJK5_CIOIN 95 IHAQ-WSPDGRHVLtTASFNLRITVW 119 5444.*******87244555555556 PP == domain 4 score: 4.6 bits; conditional E-value: 0.74 EEEEETTSSEEEEE.ET CS WD40 15 slafspdgawlasG.sd 30 +l+fs +g++la G ++ tr|A0A1W3JJK5|A0A1W3JJK5_CIOIN 138 CLSFSASGKYLAVGeCR 154 99*********999633 PP == domain 5 score: 2.0 bits; conditional E-value: 5 SEEEEEEETTSSEEE CS WD40 12 svtslafspdgawla 26 + +++++spd++ ++ tr|A0A1W3JJK5|A0A1W3JJK5_CIOIN 180 DLSGIKWSPDSRVIC 194 578999*****9974 PP == domain 6 score: 17.4 bits; conditional E-value: 6.6e-05 TEEEEEEESSSS...EEEEEEETTSSEEEEEETTSEEEE CS WD40 1 gqclrtltGHss...vtslafspdgawlasGsdDgtvri 36 g+cl t+++ ++ v + +sp +++la Gs+D++vr+ tr|A0A1W3JJK5|A0A1W3JJK5_CIOIN 211 GRCLSTFKAYDWalgVKRVEWSPASQFLAVGSYDQKVRV 249 689999*999557889999*******************8 PP == domain 7 score: 6.3 bits; conditional E-value: 0.21 EEEEEEETTSSEEEE...EETTSEEEEE CS WD40 13 vtslafspdgawlas...GsdDgtvriW 37 v+ +afspd+++la+ + ++ ++iW tr|A0A1W3JJK5|A0A1W3JJK5_CIOIN 329 VSWMAFSPDNRYLATmddS-MKSALHIW 355 55678********863322.36666666 PP == domain 8 score: 6.4 bits; conditional E-value: 0.19 SSEEEEEEETTSSEEE.EEETTSEEEEEE CS WD40 11 ssvtslafspdgawla.sGsdDgtvriWd 38 +++ + +++p la s++ +++v++W+ tr|A0A1W3JJK5|A0A1W3JJK5_CIOIN 370 DPIKCARWNPCTCRLAfSCG-NNKVYLWS 397 569999999999999889**.*******5 PP == domain 9 score: 6.1 bits; conditional E-value: 0.24 SSSEEEEEEETTSSEEE CS WD40 10 Hssvtslafspdgawla 26 H v+sl+++pdg+ l+ tr|A0A1W3JJK5|A0A1W3JJK5_CIOIN 413 H--VHSLRWHPDGKSLV 427 6..**********9975 PP >> tr|F6QAP0|F6QAP0_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 GN=ci-zf(ring)-3 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.8 0.1 2.4e-05 0.002 2 38 .] 95 133 .. 94 133 .. 0.88 2 ! 12.8 0.3 0.0019 0.16 16 38 .] 153 175 .. 142 175 .. 0.76 3 ! 20.4 0.2 7.7e-06 0.00065 4 38 .] 183 219 .. 182 219 .. 0.87 4 ! 10.7 0.8 0.0089 0.75 2 37 .. 272 315 .. 271 315 .. 0.79 Alignments for each domain: == domain 1 score: 18.8 bits; conditional E-value: 2.4e-05 EEEEEEESS.SSEEEEEEETTSSE.EEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgaw.lasGsdDgtvriWd 38 ++l tl GH s+++ ++s + la++s Dg +++Wd tr|F6QAP0|F6QAP0_CIOIN 95 KKLATLQGHmRSISDADWSFTEPNiLATCSLDGYIYVWD 133 6789*****999****8888888855799*********9 PP == domain 2 score: 12.8 bits; conditional E-value: 0.0019 EEEETTSSEEEEEETTSEEEEEE CS WD40 16 lafspdgawlasGsdDgtvriWd 38 +++++ +++ +++s Dg++riWd tr|F6QAP0|F6QAP0_CIOIN 153 VKWNRLNPYCFASSHDGNIRIWD 175 667777888666666*******9 PP == domain 3 score: 20.4 bits; conditional E-value: 7.7e-06 EEEEESS.SSEEEEEEETTSSEEEEE.ETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasG.sdDgtvriWd 38 ++++t+H s ++sl++s++ ++s+ s D ++r+W+ tr|F6QAP0|F6QAP0_CIOIN 183 VQHITAHlSKIYSLDWSRSEEHMLSSsSQDSNIRFWN 219 57889**999************7755389*******8 PP == domain 4 score: 10.7 bits; conditional E-value: 0.0089 EEEEEEESSSS.EEEEE......EETTSSE.EEEE.ETTSEEEEE CS WD40 2 qclrtltGHss.vtsla......fspdgaw.lasG.sdDgtvriW 37 q++ t+tGH++ v + ++ d++w l+ s+D+t+r+W tr|F6QAP0|F6QAP0_CIOIN 272 QPVITYTGHTDvVLHAHwrkcneVQNDQNWqLV-TwSKDQTLRLW 315 7999*****775455546777788999999776.6699******* PP >> tr|H2XK82|H2XK82_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 GN=LOC100182411 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.2 0.3 0.055 4.6 25 38 .] 2 15 .. 1 15 [. 0.94 2 ! 10.5 0.6 0.0098 0.83 5 38 .] 27 63 .. 23 63 .. 0.78 3 ? 5.8 0.2 0.31 26 12 32 .. 80 100 .. 68 112 .. 0.79 4 ? 2.3 0.0 3.9 3.3e+02 13 35 .. 120 142 .. 103 145 .. 0.74 5 ? 10.3 0.0 0.012 0.99 23 37 .. 216 230 .. 200 231 .. 0.91 6 ! 25.8 0.1 1.5e-07 1.2e-05 4 37 .. 238 273 .. 235 273 .. 0.86 Alignments for each domain: == domain 1 score: 8.2 bits; conditional E-value: 0.055 EEEEETTSEEEEEE CS WD40 25 lasGsdDgtvriWd 38 la+Gs+D v iWd tr|H2XK82|H2XK82_CIOIN 2 LATGSKDSCVIIWD 15 89***********9 PP == domain 2 score: 10.5 bits; conditional E-value: 0.0098 EEEESS.SSEEEEEEETTSSEEEEEE..TTSEEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGs..dDgtvriWd 38 r+l+GH +v l +spd + +++++ + + iW+ tr|H2XK82|H2XK82_CIOIN 27 RSLSGHtYGVGYLVWSPDDTHIIACGteESSELWIWN 63 789***555*9999*******9877634477777776 PP == domain 3 score: 5.8 bits; conditional E-value: 0.31 SEEEEEEETTSSEEEEEETTS CS WD40 12 svtslafspdgawlasGsdDg 32 s +++++ pdg+ ++G+ +g tr|H2XK82|H2XK82_CIOIN 80 SLSCCCWTPDGKKYVTGGTKG 100 478*********988998655 PP == domain 4 score: 2.3 bits; conditional E-value: 3.9 EEEEEEETTSSEEEEEETTSEEE CS WD40 13 vtslafspdgawlasGsdDgtvr 35 v sla pd++ ++s++ + +r tr|H2XK82|H2XK82_CIOIN 120 VQSLACLPDNKTVLSADTQQRIR 142 89999********9987677777 PP == domain 5 score: 10.3 bits; conditional E-value: 0.012 SEEEEEETTSEEEEE CS WD40 23 awlasGsdDgtvriW 37 ++asGs+D++v+iW tr|H2XK82|H2XK82_CIOIN 216 EYIASGSEDNKVYIW 230 579************ PP == domain 6 score: 25.8 bits; conditional E-value: 1.5e-07 EEEEESS.SSEEEEEEETTSSE.......EEEEETTSEEEEE CS WD40 4 lrtltGH.ssvtslafspdgaw.......lasGsdDgtvriW 37 + tl GH + v+++ +w las sdDgt+riW tr|H2XK82|H2XK82_CIOIN 238 IETLCGHsKTVNCV------SWnkaipsmLASVSDDGTIRIW 273 66899**888****......8888889988888********* PP >> tr|F6Z9J5|F6Z9J5_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.7 0.2 5.3e-05 0.0045 7 37 .. 396 427 .. 392 428 .. 0.89 2 ? 5.3 0.0 0.45 38 7 38 .] 448 471 .. 442 471 .. 0.63 3 ! 15.1 0.0 0.00035 0.029 10 38 .] 551 577 .. 541 577 .. 0.84 4 ? 9.6 0.0 0.019 1.6 4 38 .] 584 619 .. 579 619 .. 0.82 5 ? 6.7 0.0 0.16 14 3 35 .. 690 725 .. 688 726 .. 0.78 Alignments for each domain: == domain 1 score: 17.7 bits; conditional E-value: 5.3e-05 EESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 7 ltGH.ssvtslafspdgawlasGsdDgtvriW 37 + H ss+ ++f+p g+ +as ++Dg v+iW tr|F6Z9J5|F6Z9J5_CIOIN 396 YHDHhSSIMQCRFNPQGNSIASVDKDGVVKIW 427 5567699**************999******** PP == domain 2 score: 5.3 bits; conditional E-value: 0.45 EESSSSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 7 ltGHssvtslafspdgawlasGsdDgtvriWd 38 l+ H+s t+l l+ Gs +gt++i++ tr|F6Z9J5|F6Z9J5_CIOIN 448 LDWHTSATDL------V-LL-GSSNGTIKIYN 471 4445444555......2.33.766******98 PP == domain 3 score: 15.1 bits; conditional E-value: 0.00035 SSSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 10 HssvtslafspdgawlasGsdDgtvriWd 38 H + +la+s+dg++la+G+ +g++ ++d tr|F6Z9J5|F6Z9J5_CIOIN 551 H--IECLAYSKDGNYLATGDSKGKLTVFD 577 5..****************6699988776 PP == domain 4 score: 9.6 bits; conditional E-value: 0.019 EEEEESS.SSEEEEEEETTSSEEEE.EETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlas.GsdDgtvriWd 38 +++ +H ++++ ++fs+d +++++ G Dg+ W+ tr|F6Z9J5|F6Z9J5_CIOIN 584 MQSRQAHsGPIYTVQFSQDERFVFTlGA-DGKFCAWN 619 555679*777*************98455.**999997 PP == domain 5 score: 6.7 bits; conditional E-value: 0.16 EEEEEESS.SSEEEEEEETTSSE........EEEEETTSEEE CS WD40 3 clrtltGH.ssvtslafspdgaw........lasGsdDgtvr 35 ++ tl H s+v sl +w ++G++Dg+v tr|F6Z9J5|F6Z9J5_CIOIN 690 KVLTLVDHrSPVLSL------DWtsalkcayCMTGGMDGKVN 725 5678889*999****......8877666666568999**996 PP >> tr|F6SHP0|F6SHP0_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.9 0.2 2.2e-05 0.0019 8 37 .. 81 112 .. 72 113 .. 0.79 2 ! 25.1 0.4 2.4e-07 2e-05 4 38 .] 120 157 .. 117 157 .. 0.80 3 ! 13.5 0.2 0.0011 0.092 13 37 .. 173 196 .. 161 196 .. 0.89 Alignments for each domain: == domain 1 score: 18.9 bits; conditional E-value: 2.2e-05 ESSSSEEEEEEETTSSEEEEE..ETTSEEEEE CS WD40 8 tGHssvtslafspdgawlasG..sdDgtvriW 37 G+++ t+l+fs+dg+ +++G + ++vri+ tr|F6SHP0|F6SHP0_CIOIN 81 PGQKCLTCLSFSHDGNSIVTGesGHQPHVRIF 112 477779*************987656*****97 PP == domain 2 score: 25.1 bits; conditional E-value: 2.4e-07 EEEEESSSS.EEEEEEETTSSEEEEE...ETTSEEEEEE CS WD40 4 lrtltGHss.vtslafspdgawlasG...sdDgtvriWd 38 + ++ H+ v+++afspd ++++s + D+ + +Wd tr|F6SHP0|F6SHP0_CIOIN 120 VVSFPSHKYgVSCVAFSPDAKFVVSVgfqH-DNVINVWD 157 456899*555************99752444.*******9 PP == domain 3 score: 13.5 bits; conditional E-value: 0.0011 EEEEEEETTSSEEEEEETTSEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriW 37 ++s++fs+ ++++++ + +++v++W tr|F6SHP0|F6SHP0_CIOIN 173 IRSVSFSDKSDYFVTVG-NRHVKFW 196 99*************9*.******* PP >> tr|F6WUC3|F6WUC3_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 GN=LOC100185530 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.0 0.0 0.13 11 13 38 .] 34 59 .. 22 59 .. 0.84 2 ! 17.5 0.0 6.4e-05 0.0054 21 38 .] 129 146 .. 109 146 .. 0.82 3 ? 6.9 0.0 0.14 12 7 35 .. 243 271 .. 238 271 .. 0.70 4 ! 15.0 0.2 0.00039 0.033 10 38 .] 288 317 .. 279 317 .. 0.80 Alignments for each domain: == domain 1 score: 7.0 bits; conditional E-value: 0.13 EEEEEEETTSSE.EEEEETTSEEEEEE CS WD40 13 vtslafspdgaw.lasGsdDgtvriWd 38 v +l+f+p+ ++ la++ ++g vr+++ tr|F6WUC3|F6WUC3_CIOIN 34 V-DLSFHPSTTYtLATANMNGYVRLYN 59 3.677*******9999988******97 PP == domain 2 score: 17.5 bits; conditional E-value: 6.4e-05 TSSEEEEEETTSEEEEEE CS WD40 21 dgawlasGsdDgtvriWd 38 d+++la+G+dDgt+++Wd tr|F6WUC3|F6WUC3_CIOIN 129 DKNLLATGDDDGTLKVWD 146 77889************9 PP == domain 3 score: 6.9 bits; conditional E-value: 0.14 EESS.SSEEEEE.EETTSSEEEEEETTSEEE CS WD40 7 ltGH.ssvtsla.fspdgawlasGsdDgtvr 35 + GH ++v ++a + + + +++Gs Dg +r tr|F6WUC3|F6WUC3_CIOIN 243 FPGHpGPVDCIAkV--SEDVVCTGSADGLIR 271 78**9887666321..3333789*****998 PP == domain 4 score: 15.0 bits; conditional E-value: 0.00039 S.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 10 H.ssvtslafspdgawlasGsdDgtvriWd 38 H +v + +dg+++as+s D+ +++W+ tr|F6WUC3|F6WUC3_CIOIN 288 HgLPVEKVEATHDGKFIASCSHDNLIKFWS 317 333488888999********99*******5 PP >> tr|F6TYU6|F6TYU6_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 GN=LOC100177422 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.3 0.2 0.05 4.2 13 38 .] 6 31 .. 1 31 [. 0.82 2 ! 21.4 0.0 3.5e-06 0.0003 8 38 .] 43 75 .. 35 75 .. 0.85 3 ? 3.9 0.0 1.3 1.1e+02 3 37 .. 81 120 .. 79 121 .. 0.68 4 ? 7.1 0.2 0.12 10 8 38 .] 143 173 .. 136 173 .. 0.79 5 ? 3.6 0.0 1.5 1.3e+02 24 38 .] 220 234 .. 198 234 .. 0.73 6 ! 12.1 0.1 0.0031 0.26 4 37 .. 295 329 .. 293 330 .. 0.84 Alignments for each domain: == domain 1 score: 8.3 bits; conditional E-value: 0.05 EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriWd 38 t++a++++ ++++s+ v++Wd tr|F6TYU6|F6TYU6_CIOIN 6 ATCCAYNSNFGHVITCSEGSVVKLWD 31 489997777777889**********9 PP == domain 2 score: 21.4 bits; conditional E-value: 3.5e-06 ESS..SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 8 tGH..ssvtslafspdgawlasGsdDgtvriWd 38 ++H ++s+ f++ g+ l+++++Dg vriW+ tr|F6TYU6|F6TYU6_CIOIN 43 KAHgeAAISSITFDSTGRRLITAGRDGAVRIWN 75 5895334*************************8 PP == domain 3 score: 3.9 bits; conditional E-value: 1.3 EEEEEE.SS..SSEEEEE..EETTSSEEEEEETTSEEEEE CS WD40 3 clrtlt.GH..ssvtsla..fspdgawlasGsdDgtvriW 37 cl++l+ + vt+++ +++++++ ++D+ + i+ tr|F6TYU6|F6TYU6_CIOIN 81 CLKSLErENcrKEVTDCSyvELNNNKYIIAVGWDHRINIF 120 6666652233344888877766777888889*****9986 PP == domain 4 score: 7.1 bits; conditional E-value: 0.12 ESS.SSEEEEEEETTSSE....EEEE..ETTSEEEEEE CS WD40 8 tGH.ssvtslafspdgaw....lasG..sdDgtvriWd 38 +GH ++ s+ ++ l+ G s+Dg + +W+ tr|F6TYU6|F6TYU6_CIOIN 143 RGHtEDIVSV------TFgrpnLL-GtvSYDGYIIVWN 173 5998889999......66666666.54478*******8 PP == domain 5 score: 3.6 bits; conditional E-value: 1.5 EEEEEETTSEEEEEE CS WD40 24 wlasGsdDgtvriWd 38 l++G+ Dg +W+ tr|F6TYU6|F6TYU6_CIOIN 220 SLIAGCSDGAAIVWN 234 3556755*******8 PP == domain 6 score: 12.1 bits; conditional E-value: 0.0031 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 + +++ H + +t++ + + ++++ s D t r+W tr|F6TYU6|F6TYU6_CIOIN 295 VASWRCHvQTITCIEVIESRELVITTSSDYTARLW 329 567899*999****99999999886655******* PP >> tr|F6RZ17|F6RZ17_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 GN=LOC100184920 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.5 0.0 0.18 15 9 30 .. 15 40 .. 10 50 .. 0.67 2 ! 22.0 0.1 2.4e-06 0.0002 3 37 .. 51 86 .. 49 87 .. 0.90 3 ? 2.0 0.0 4.8 4e+02 9 29 .. 97 118 .. 90 122 .. 0.80 4 ? 7.4 0.0 0.095 8 7 26 .. 133 155 .. 128 165 .. 0.73 5 ! 11.0 0.9 0.0068 0.58 12 34 .. 267 294 .. 250 296 .. 0.78 Alignments for each domain: == domain 1 score: 6.5 bits; conditional E-value: 0.18 SS..SSEEEEEEETTSSEEE..EEET CS WD40 9 GH..ssvtslafspdgawla..sGsd 30 G+ +++++laf pdg+ l+ sGs+ tr|F6RZ17|F6RZ17_CIOIN 15 GQtpKCIYDLAFKPDGSQLLvaSGSR 40 664466************75225653 PP == domain 2 score: 22.0 bits; conditional E-value: 2.4e-06 EEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEE CS WD40 3 clrtltGHss.vtslafspdgawlasGsdDgtvriW 37 + +tl++H++ v++l +s+dg+ +asG D+ v iW tr|F6RZ17|F6RZ17_CIOIN 51 HSQTLRAHKDtVYCLGYSRDGKRFASGAADKCVIIW 86 6789****555****************99******* PP == domain 3 score: 2.0 bits; conditional E-value: 4.8 SS.SSEEEEEEETTSSEEEEEE CS WD40 9 GH.ssvtslafspdgawlasGs 29 +H + +la++p + las+ tr|F6RZ17|F6RZ17_CIOIN 97 THnEAIQCLAYNPVTPQLASCA 118 69455********999999985 PP == domain 4 score: 7.4 bits; conditional E-value: 0.095 EESS..SS.EEEEEEETTSSEEE CS WD40 7 ltGH..ss.vtslafspdgawla 26 H s+ +t++++ +dg++la tr|F6RZ17|F6RZ17_CIOIN 133 VNKHkmSNrITCCSWTSDGQYLA 155 556876335************97 PP == domain 5 score: 11.0 bits; conditional E-value: 0.0068 S.....EEEEEEETTSSEEEEEETTSEE CS WD40 12 s.....vtslafspdgawlasGsdDgtv 34 + v+s+a pdg+ ++ G+ Dgt+ tr|F6RZ17|F6RZ17_CIOIN 267 DsnsgwVWSIACKPDGNVVVVGHQDGTI 294 134457*********************8 PP >> tr|H2XZL1|H2XZL1_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.2 0.0 2.1 1.8e+02 13 27 .. 4 18 .. 2 23 .. 0.83 2 ! 32.2 0.2 1.4e-09 1.2e-07 3 38 .] 36 72 .. 34 72 .. 0.90 3 ! 16.7 0.1 0.00011 0.0095 7 37 .. 82 113 .. 76 114 .. 0.81 Alignments for each domain: == domain 1 score: 3.2 bits; conditional E-value: 2.1 EEEEEEETTSSEEEE CS WD40 13 vtslafspdgawlas 27 v+++a+spd +++a tr|H2XZL1|H2XZL1_CIOIN 4 VSAIAVSPDETLVAI 18 899********9985 PP == domain 2 score: 32.2 bits; conditional E-value: 1.4e-09 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 + + ++GH + v ++a+spd++ l+s s D+++++Wd tr|H2XZL1|H2XZL1_CIOIN 36 PAKQFSGHsNKVAAIAWSPDSQRLCSVSVDCSIMVWD 72 55789***777*************999*********9 PP == domain 3 score: 16.7 bits; conditional E-value: 0.00011 EESS.SS.EEEEEEETTSSEEEEEETTSEEEEE CS WD40 7 ltGH.ss.vtslafspdgawlasGsdDgtvriW 37 ++H +s ++++a+ ++++ ++ D++vr W tr|H2XZL1|H2XZL1_CIOIN 82 QRAHpKSvINDVAWLDNHTVVT-VAQDCSVRQW 113 479*99966***9999999985.677******* PP >> tr|H2XRN7|H2XRN7_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 11.7 0.0 0.0041 0.35 8 38 .] 82 113 .. 76 113 .. 0.88 2 ! 14.6 0.3 0.0005 0.042 3 38 .] 463 501 .. 461 501 .. 0.87 3 ! 22.1 0.4 2.2e-06 0.00018 3 37 .. 507 542 .. 505 543 .. 0.80 Alignments for each domain: == domain 1 score: 11.7 bits; conditional E-value: 0.0041 ESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 8 tGH.ssvtslafspdgawlasGsdDgtvriWd 38 + H + v ++af +g +++++s+D +++++ tr|H2XRN7|H2XRN7_CIOIN 82 EEHtDEVLHVAFANNGMMFSTCSKDAYIKVYN 113 679556************************97 PP == domain 2 score: 14.6 bits; conditional E-value: 0.0005 EEEEEESS..SS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH..ss.vtslafspdgawlasGsdDgtvriWd 38 ++ +l+GH +s v l s++ ++asGs+D+ +iWd tr|H2XRN7|H2XRN7_CIOIN 463 KISVLSGHnaKSdVFFLHLSSNDLYVASGSEDNCGYIWD 501 57899***87336*99999*******************9 PP == domain 3 score: 22.1 bits; conditional E-value: 2.2e-06 EEEEEESSSS.EEEEEEETTSSEEE.EEETTSEEEEE CS WD40 3 clrtltGHss.vtslafspdgawla.sGsdDgtvriW 37 c+ l H++ v+++a++p + +a s+sdD+t++iW tr|H2XRN7|H2XRN7_CIOIN 507 CVSRL-VHDDvVNCVAVNPCDPSMAvSASDDKTIKIW 542 55555.597757****9999999875789******** PP >> tr|F6TZ23|F6TZ23_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.3 0.0 0.05 4.3 4 30 .. 26 53 .. 23 63 .. 0.73 2 ? 7.4 0.0 0.098 8.3 14 37 .. 84 107 .. 72 108 .. 0.92 3 ! 14.8 0.0 0.00045 0.038 2 36 .. 113 149 .. 112 151 .. 0.86 4 ! 12.9 0.0 0.0017 0.14 9 38 .] 166 195 .. 158 195 .. 0.84 5 ? 6.3 0.0 0.21 18 14 38 .] 214 239 .. 202 239 .. 0.83 Alignments for each domain: == domain 1 score: 8.3 bits; conditional E-value: 0.05 EEEEESS.SSEEEEEEETTSSEEEEEET CS WD40 4 lrtltGH.ssvtslafspdgawlasGsd 30 ++ + H ++v ++a+s+d+++++s+s tr|F6TZ23|F6TZ23_CIOIN 26 VKQFNYHkGNVKDIAWSRDNTMMCSASA 53 5666668555************987643 PP == domain 2 score: 7.4 bits; conditional E-value: 0.098 EEEEEETTSSEEEEEETTSEEEEE CS WD40 14 tslafspdgawlasGsdDgtvriW 37 t++++s++g+ + sG++ g v +W tr|F6TZ23|F6TZ23_CIOIN 84 TCVRVSHSGRRMYSGGMGGDVNVW 107 8*********************** PP == domain 3 score: 14.8 bits; conditional E-value: 0.00045 EEEEEEE.SS.SSEEEEEEETTSSEEEEEETTSEEEE CS WD40 2 qclrtlt.GH.ssvtslafspdgawlasGsdDgtvri 36 q+ ++++ +H s+vt++a++ + + +asGs +g + i tr|F6TZ23|F6TZ23_CIOIN 113 QLKKSYKdTHsSPVTCIAVNEYESHVASGSNKGDIVI 149 6778887699788*****************9998876 PP == domain 4 score: 12.9 bits; conditional E-value: 0.0017 SSSSEEEEEEETTSSEEEEE..ETTSEEEEEE CS WD40 9 GHssvtslafspdgawlasG..sdDgtvriWd 38 G+ v+s+afsp ++ l+ G +dDg++++Wd tr|F6TZ23|F6TZ23_CIOIN 166 GQ-AVRSMAFSPWKHSLV-GmtMDDGSIHLWD 195 44.69***********98.96559*******9 PP == domain 5 score: 6.3 bits; conditional E-value: 0.21 EEEEEETTSSEEEEE.ETTSEEEEEE CS WD40 14 tslafspdgawlasG.sdDgtvriWd 38 sl+fs+ +++l+s+ + D+++ i+d tr|F6TZ23|F6TZ23_CIOIN 214 MSLSFSHFNDLLVSSvGLDKKLIIYD 239 5899********987778*****998 PP >> tr|F6UZU2|F6UZU2_CIOIN polycomb protein eed-like OS=Ciona intestinalis OX=7719 GN=LOC100180904 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 29.8 0.0 8.2e-09 7e-07 2 38 .] 163 201 .. 162 201 .. 0.92 2 ! 21.9 0.2 2.5e-06 0.00021 7 38 .] 214 246 .. 207 246 .. 0.88 3 ? 8.1 0.8 0.056 4.8 13 38 .] 395 420 .. 380 420 .. 0.80 Alignments for each domain: == domain 1 score: 29.8 bits; conditional E-value: 8.2e-09 EEEEEEESS.SSEEEEEEETTSSEEE.EEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawla.sGsdDgtvriWd 38 qc++++ GH + v+ l+f+p + ++ s+s+D+++r+W+ tr|F6UZU2|F6UZU2_CIOIN 163 QCIKHYIGHgNAVNELKFHPQMPQILlSASKDHSLRVWN 201 8********999************644***********8 PP == domain 2 score: 21.9 bits; conditional E-value: 2.5e-06 EESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 7 ltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +GH + v s++f+ g+ ++s+++D++++iW+ tr|F6UZU2|F6UZU2_CIOIN 214 VEGHrDEVLSCDFNIFGTKIISCGMDHSLKIWN 246 57**888****************99*******8 PP == domain 3 score: 8.1 bits; conditional E-value: 0.056 EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriWd 38 ++ afs+dg+ l++ +dD t+ Wd tr|F6UZU2|F6UZU2_CIOIN 395 IRQTAFSKDGSILICVCDDSTIWRWD 420 55556********98799****9887 PP >> tr|F6R982|F6R982_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.9 0.1 0.28 24 13 38 .] 137 162 .. 126 162 .. 0.82 2 ? 9.5 0.0 0.02 1.7 13 34 .. 245 265 .. 233 268 .. 0.85 3 ! 14.7 0.1 0.00047 0.04 12 37 .. 293 319 .. 281 320 .. 0.82 4 ? 7.6 0.0 0.083 7.1 4 38 .] 327 363 .. 324 363 .. 0.80 5 ! 12.4 0.0 0.0025 0.21 21 38 .] 395 412 .. 380 412 .. 0.86 Alignments for each domain: == domain 1 score: 5.9 bits; conditional E-value: 0.28 EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriWd 38 ++++spdg ++ s D+ v++++ tr|F6R982|F6R982_CIOIN 137 LKGCKWSPDGLCFLVNSNDCCVKLFN 162 56789*******886778*****987 PP == domain 2 score: 9.5 bits; conditional E-value: 0.02 EEEEEEETTSSEEEEEETTSEE CS WD40 13 vtslafspdgawlasGsdDgtv 34 v+slaf+pdg+ l++G+ ++ + tr|F6R982|F6R982_CIOIN 245 VHSLAFCPDGQQLLCGC-KREL 265 99************999.7665 PP == domain 3 score: 14.7 bits; conditional E-value: 0.00047 S.EEEEEEETTSSEEEEEETTSEEEEE CS WD40 12 s.vtslafspdgawlasGsdDgtvriW 37 + ++s+ f pdg+ +a+G++Dgtv ++ tr|F6R982|F6R982_CIOIN 293 NiISSVEFGPDGTVFACGCYDGTVGLY 319 2489*******************9665 PP == domain 4 score: 7.6 bits; conditional E-value: 0.083 EEEEESSSS.EEEEEEETTSSEEEEEET.TSEEEEEE CS WD40 4 lrtltGHss.vtslafspdgawlasGsd.DgtvriWd 38 l + +H++ vt ++f dg l sG + ++ Wd tr|F6R982|F6R982_CIOIN 327 LEQFQAHKHgVTEIRFATDGIKLYSGARnEDLLKCWD 363 556899*666****************75488777777 PP == domain 5 score: 12.4 bits; conditional E-value: 0.0025 TSSEEEEEETTSEEEEEE CS WD40 21 dgawlasGsdDgtvriWd 38 + +l+sG+ Dg vr+Wd tr|F6R982|F6R982_CIOIN 395 NEELLVSGGTDGVVRFWD 412 455699**99*******9 PP >> tr|F6WK69|F6WK69_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.2 0.2 1 86 18 38 .] 101 121 .. 89 121 .. 0.86 2 ! 11.1 0.0 0.0065 0.55 2 38 .] 129 167 .. 128 167 .. 0.85 3 ? 4.0 0.0 1.1 93 11 35 .. 182 207 .. 172 211 .. 0.76 4 ! 18.6 0.0 2.8e-05 0.0023 5 37 .. 220 256 .. 216 257 .. 0.89 5 ? 2.4 0.1 3.5 3e+02 12 38 .] 274 303 .. 259 303 .. 0.67 6 ? 9.2 0.0 0.025 2.1 7 34 .. 314 343 .. 310 345 .. 0.82 Alignments for each domain: == domain 1 score: 4.2 bits; conditional E-value: 1 EETTSSEEEEEETTSEEEEEE CS WD40 18 fspdgawlasGsdDgtvriWd 38 s+d +++a++ +g + +Wd tr|F6WK69|F6WK69_CIOIN 101 SSKDENLIATAATNGAIVVWD 121 5889999999978*******9 PP == domain 2 score: 11.1 bits; conditional E-value: 0.0065 EEEEEEESS.SSEEEEEEETTSSE.EEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgaw.lasGsdDgtvriWd 38 ++l +l+ H vt ++ +p + l+sGs D+t r++d tr|F6WK69|F6WK69_CIOIN 129 KQLAVLSDHrRTVTKISIHPKESTrLLSGSQDCTMRMFD 167 56889999*777*****7777777799*********998 PP == domain 3 score: 4.0 bits; conditional E-value: 1.1 SSEEEEEEETTSSEEEEEE.TTSEEE CS WD40 11 ssvtslafspdgawlasGs.dDgtvr 35 ++v+s+ fsp + +++++s d+g+v tr|F6WK69|F6WK69_CIOIN 182 DGVRSVEFSPFHYFMFAASfDNGSVQ 207 359***********876654788875 PP == domain 4 score: 18.6 bits; conditional E-value: 2.8e-05 EEEESS.SSEEEEEEETTSSE...EEEEETTSEEEEE CS WD40 5 rtltGH.ssvtslafspdgaw...lasGsdDgtvriW 37 + +H +sv+ l ++pd + +a+G++D+ v++W tr|F6WK69|F6WK69_CIOIN 220 SQFLAHkGSVYTLNWHPDEDErnkIATGGRDNIVKVW 256 55679*777**************************** PP == domain 5 score: 2.4 bits; conditional E-value: 3.5 SEEEEEEETTSSE.......EEEEET..TSEEEEEE CS WD40 12 svtslafspdgaw.......lasGsd..DgtvriWd 38 sv++++ w la+ s+ D +v +Wd tr|F6WK69|F6WK69_CIOIN 274 SVSAVR------WrpshkdqLATVSMmlDFSVNVWD 303 477774......4444444688877557*******9 PP == domain 6 score: 9.2 bits; conditional E-value: 0.025 EESSSSE.EEEEEETTSSEEE.EEETTSEE CS WD40 7 ltGHssv.tslafspdgawla.sGsdDgtv 34 ++ H++v t++a+ ++ + ++ s+s+Dgt+ tr|F6WK69|F6WK69_CIOIN 314 FEEHNDVtTGIAWKQNDPEVLfSCSKDGTL 343 678*9**99**88888888544*******8 PP >> tr|A0A1W5BFR1|A0A1W5BFR1_CIOIN WD repeat-containing protein 13-like OS=Ciona intestinalis OX=7719 GN=LOC100183150 PE # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.2 0.0 0.11 9.1 5 36 .. 141 175 .. 139 175 .. 0.78 2 ! 22.4 0.5 1.7e-06 0.00015 4 37 .. 185 219 .. 183 220 .. 0.90 3 ? 4.4 0.0 0.86 73 19 38 .] 397 416 .. 375 416 .. 0.77 4 ! 17.6 0.0 5.8e-05 0.0049 3 38 .] 424 460 .. 422 460 .. 0.90 Alignments for each domain: == domain 1 score: 7.2 bits; conditional E-value: 0.11 EEEESS..SSEEEEEEETTSSEEEE.EETTSEEEE CS WD40 5 rtltGH..ssvtslafspdgawlas.GsdDgtvri 36 ++++ H ++ ts++f d + l++ +s+Dgt+ i tr|A0A1W5BFR1|A0A1W5BFR1_CIOIN 141 HIFDEHigCPATSIKFANDEKNLLAySSMDGTISI 175 67899985557****99999998743466****87 PP == domain 2 score: 22.4 bits; conditional E-value: 1.7e-06 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 l tl+GH ++vt++++s ++++++s s D t+r+W tr|A0A1W5BFR1|A0A1W5BFR1_CIOIN 185 LVTLKGHnDGVTDFSWSLSNDLIVSVSLDATLRLW 219 5689***555**************99********* PP == domain 3 score: 4.4 bits; conditional E-value: 0.86 ETTSSEEEEEETTSEEEEEE CS WD40 19 spdgawlasGsdDgtvriWd 38 + ga +++Gs+D +v ++d tr|A0A1W5BFR1|A0A1W5BFR1_CIOIN 397 FRQGACVVTGSEDMSVCFFD 416 45677799********9987 PP == domain 4 score: 17.6 bits; conditional E-value: 5.8e-05 EEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 c+ l GHs v +++f++d ++las++ g v iW+ tr|A0A1W5BFR1|A0A1W5BFR1_CIOIN 424 CVNRLQGHSAvVLAVSFNHDESMLASCDTEGMVIIWK 460 788899**7767***************88*******6 PP >> tr|H2Y0Z1|H2Y0Z1_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 22.4 0.0 1.7e-06 0.00014 5 37 .. 667 700 .. 662 701 .. 0.89 2 ? 6.1 0.1 0.25 21 4 37 .. 708 744 .. 705 745 .. 0.81 3 ? 5.4 0.1 0.4 34 15 38 .] 765 787 .. 755 787 .. 0.87 4 ! 18.5 0.9 3e-05 0.0025 3 37 .. 916 951 .. 914 952 .. 0.89 5 ? 3.6 0.1 1.5 1.3e+02 21 38 .] 977 995 .] 971 995 .] 0.86 Alignments for each domain: == domain 1 score: 22.4 bits; conditional E-value: 1.7e-06 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvriW 37 +tltG +svt++ +s d + l++Gs+Dgt++iW tr|H2Y0Z1|H2Y0Z1_CIOIN 667 TTLTGFsKSVTCMEVSCDASALFAGSRDGTIMIW 700 4699**999************************* PP == domain 2 score: 6.1 bits; conditional E-value: 0.25 EEEEESSSS.EEEEEEETTSSEEEEEETTSEEEE..E CS WD40 4 lrtltGHss.vtslafspdgawlasGsdDgtvri..W 37 l+t+ H++ v ++a+ g las+s D+t+ + W tr|H2Y0Z1|H2Y0Z1_CIOIN 708 LHTIHLHKDtVLCFATAAPGLRLASSSADNTLQVlnW 744 7777778555****99999999****99***987555 PP == domain 3 score: 5.4 bits; conditional E-value: 0.4 EEEEETTSSEEEEEETTSEEEEEE CS WD40 15 slafspdgawlasGsdDgtvriWd 38 la ++dg+ l+s++ + + iWd tr|H2Y0Z1|H2Y0Z1_CIOIN 765 NLALNDDGTVLVSAC-GKQINIWD 787 67789**********.*******9 PP == domain 4 score: 18.5 bits; conditional E-value: 3e-05 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 ++ +l H +sv+ l f++ g+ l+sG++D+t+ W tr|H2Y0Z1|H2Y0Z1_CIOIN 916 KTSVLQHHhDSVSTLNFNKTGDILVSGGRDHTLLCW 951 56678878789**********************999 PP == domain 5 score: 3.6 bits; conditional E-value: 1.5 TSSEEEEEET.TSEEEEEE CS WD40 21 dgawlasGsd.DgtvriWd 38 +g+ +as+s+ +++++W+ tr|H2Y0Z1|H2Y0Z1_CIOIN 977 SGNIVASSSKnERSIKVWN 995 57889999866*******8 PP >> tr|F6YBW7|F6YBW7_CIOIN mRNA export factor-like OS=Ciona intestinalis OX=7719 GN=LOC100184010 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.3 0.4 1.9 1.6e+02 22 37 .. 50 65 .. 18 66 .. 0.74 2 ! 20.8 0.1 5.5e-06 0.00047 10 38 .] 81 110 .. 73 110 .. 0.93 3 ! 19.7 0.3 1.2e-05 0.001 10 38 .] 122 153 .. 114 153 .. 0.77 4 ? 10.0 0.1 0.014 1.2 6 38 .] 252 294 .. 249 294 .. 0.80 5 ? 2.8 0.0 2.7 2.2e+02 11 31 .. 309 330 .. 298 332 .. 0.77 Alignments for each domain: == domain 1 score: 3.3 bits; conditional E-value: 1.9 SSEEEEEETTSEEEEE CS WD40 22 gawlasGsdDgtvriW 37 g++l++Gs+ + +r W tr|F6YBW7|F6YBW7_CIOIN 50 GNFLIAGSWANDIRCW 65 5668999999999999 PP == domain 2 score: 20.8 bits; conditional E-value: 5.5e-06 S.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 10 H.ssvtslafspdgawlasGsdDgtvriWd 38 H ++v ++++s+dg+ ++++s D+t ++Wd tr|F6YBW7|F6YBW7_CIOIN 81 HqGPVLDVSWSDDGTKVFTASADKTAKMWD 110 7677*************************9 PP == domain 3 score: 19.7 bits; conditional E-value: 1.2e-05 S.SSE.EEEE.EETTSSEEEEEETTSEEEEEE CS WD40 10 H.ssv.tsla.fspdgawlasGsdDgtvriWd 38 H ++ t+ sp+ + l++Gs+D+tv++Wd tr|F6YBW7|F6YBW7_CIOIN 122 HdAPIkTCHWiKSPNYSCLMTGSWDKTVKFWD 153 655574444366888888*************9 PP == domain 4 score: 10.0 bits; conditional E-value: 0.014 EEESS.SS.........EEEEEEETTSSEEEE.EETTSEEEEEE CS WD40 6 tltGH.ss.........vtslafspdgawlas.GsdDgtvriWd 38 t++ H s v+s+af+p la+ Gs Dg+ +Wd tr|F6YBW7|F6YBW7_CIOIN 252 TFKCHrSTptqpqeihvVNSIAFHPTFGTLATvGS-DGKYSFWD 294 677786445778888878************96267.**999998 PP == domain 5 score: 2.8 bits; conditional E-value: 2.7 SSEEEEEEETTSSEEE.EEETT CS WD40 11 ssvtslafspdgawla.sGsdD 31 +s++++a s++g+ +a ++s+D tr|F6YBW7|F6YBW7_CIOIN 309 QSISACAISHNGNIFAyASSYD 330 45999*********97777767 PP >> tr|H2Y0Y4|H2Y0Y4_CIOIN Coronin OS=Ciona intestinalis OX=7719 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.0 0.0 6.1e-08 5.2e-06 3 37 .. 73 109 .. 71 109 .. 0.86 2 ! 10.6 0.0 0.0093 0.79 6 38 .] 126 160 .. 121 160 .. 0.70 3 ? 7.0 0.0 0.13 11 15 38 .] 178 201 .. 172 201 .. 0.93 Alignments for each domain: == domain 1 score: 27.0 bits; conditional E-value: 6.1e-08 EEEEEESS.SSEEEEEEETTSSEE.EEEETTSEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawl.asGsdDgtvriW 37 ++ +tGH s v ++afsp + l a++s+Dg v++W tr|H2Y0Y4|H2Y0Y4_CIOIN 73 KQANFTGHkSTVLDFAFSPFDDNLlATCSEDGEVKLW 109 57789***666*****999999963799********* PP == domain 2 score: 10.6 bits; conditional E-value: 0.0093 EEESS.SSEEEEEEETTSSE..EEEEETTSEEEEEE CS WD40 6 tltGH.ssvtslafspdgaw..lasGsdDgtvriWd 38 tl+ H + v+ l+++p l++G+ D+ + +W+ tr|H2Y0Y4|H2Y0Y4_CIOIN 126 TLSRHtKRVNLLRWHPVAENilLTAGC-DNRICVWN 160 677787778777666666664345778.*******8 PP == domain 3 score: 7.0 bits; conditional E-value: 0.13 EEEEETTSSEEEEEETTSEEEEEE CS WD40 15 slafspdgawlasGsdDgtvriWd 38 +++++++g+ +a ++D+ +r++d tr|H2Y0Y4|H2Y0Y4_CIOIN 178 DVCWNHNGTAFAVTTKDKALRVYD 201 89*********99999******98 PP >> tr|F6Y6X2|F6Y6X2_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 12.6 0.1 0.0022 0.19 23 38 .] 15 30 .. 2 30 .. 0.82 2 ! 35.3 0.2 1.5e-10 1.3e-08 1 38 [] 34 73 .. 34 73 .. 0.87 Alignments for each domain: == domain 1 score: 12.6 bits; conditional E-value: 0.0022 SEEEEEETTSEEEEEE CS WD40 23 awlasGsdDgtvriWd 38 + l+sG D tv++Wd tr|F6Y6X2|F6Y6X2_CIOIN 15 NILVSGNADSTVKVWD 30 34789*88*******9 PP == domain 2 score: 35.3 bits; conditional E-value: 1.5e-10 TEEEEEEESS.SS...EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 1 gqclrtltGH.ss...vtslafspdgawlasGsdDgtvriWd 38 g+cl+tl+G ++ vt+l + +g++++++sdDgtv++Wd tr|F6Y6X2|F6Y6X2_CIOIN 34 GECLKTLEGSnKHhsaVTCL--QFYGKFVITSSDDGTVKLWD 73 689****877544667****..88*****************9 PP >> tr|F6WY47|F6WY47_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 13.5 0.2 0.0011 0.097 13 38 .] 28 52 .. 18 52 .. 0.85 2 ! 22.9 0.3 1.2e-06 0.0001 6 38 .] 61 94 .. 58 94 .. 0.89 3 ? 1.8 0.0 5.6 4.7e+02 16 38 .] 202 224 .. 185 224 .. 0.65 4 ? 9.4 0.0 0.023 2 16 37 .. 255 277 .. 244 278 .. 0.89 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 0.0011 EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriWd 38 vt+ f+++g++la G+ Dg + +Wd tr|F6WY47|F6WY47_CIOIN 28 VTCT-FNRHGTLLAVGCNDGRIVVWD 52 5555.********************9 PP == domain 2 score: 22.9 bits; conditional E-value: 1.2e-06 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 6 tltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++ +H +v+sl++s++g+ l+s+ D+ v iWd tr|F6WY47|F6WY47_CIOIN 61 VYNAHaHPVCSLSWSRNGRRLISAATDNLVCIWD 94 68889557**************9988*******9 PP == domain 3 score: 1.8 bits; conditional E-value: 5.6 EEEETTSSEEEEEETTSEEEEEE CS WD40 16 lafspdgawlasGsdDgtvriWd 38 + f + g+ ++ + D+ +r++d tr|F6WY47|F6WY47_CIOIN 202 IEFARKGTCFLVNTADRIIRVYD 224 446666666543445******98 PP == domain 4 score: 9.4 bits; conditional E-value: 0.023 EEEETTSSEEEEEE.TTSEEEEE CS WD40 16 lafspdgawlasGs.dDgtvriW 37 ++fs dg ++++Gs + + +++W tr|F6WY47|F6WY47_CIOIN 255 CCFSGDGEFICAGSaKQHQLYVW 277 78***********857******9 PP >> tr|F6YUP9|F6YUP9_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 GN=LOC100179169 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 31.3 1.0 2.7e-09 2.3e-07 5 38 .] 151 183 .. 148 183 .. 0.90 2 ! 13.2 0.2 0.0014 0.12 3 37 .. 189 252 .. 187 253 .. 0.79 3 ! 12.1 1.1 0.0031 0.26 9 37 .. 304 331 .. 295 332 .. 0.68 Alignments for each domain: == domain 1 score: 31.3 bits; conditional E-value: 2.7e-09 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++l+GH + +ts+ + dg+wl+sGs D +v++Wd tr|F6YUP9|F6YUP9_CIOIN 151 KELEGHhDIITSV--DCDGNWLVSGSQDTSVKVWD 183 6899**4448***..99*****************9 PP == domain 2 score: 13.2 bits; conditional E-value: 0.0014 EEEEEESS.SSEEEEE.....................EETTSSE.......EEEEETTSEEEEE CS WD40 3 clrtltGH.ssvtsla.....................fspdgaw.......lasGsdDgtvriW 37 +r tGH ++vt+++ ++ dg l+++s D+ +++W tr|F6YUP9|F6YUP9_CIOIN 189 EVRNMTGHsGCVTCVQilnncesdriwkvnsmefkllVDADGETllnkqklLLTSSLDCFIKLW 252 578899**666*****99998888887777777777755555557777777789999******* PP == domain 3 score: 12.1 bits; conditional E-value: 0.0031 SS.SSEEEEEEETTSSE....EEEEETTSEEEEE CS WD40 9 GH.ssvtslafspdgaw....lasGsdDgtvriW 37 H + ++sl +w l++ s Dg+v++W tr|F6YUP9|F6YUP9_CIOIN 304 IHtQEISSL------KWhcnhLVTTSFDGSVKVW 331 575669999......665555556666******* PP >> tr|F6U8U5|F6U8U5_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.9 0.0 0.13 11 6 29 .. 56 81 .. 51 92 .. 0.70 2 ! 23.5 0.1 8e-07 6.8e-05 9 38 .] 226 257 .. 216 257 .. 0.87 3 ? 10.0 0.7 0.014 1.2 9 36 .. 271 300 .. 263 302 .. 0.73 4 ? 10.4 0.0 0.011 0.94 4 36 .. 331 365 .. 329 365 .. 0.87 Alignments for each domain: == domain 1 score: 6.9 bits; conditional E-value: 0.13 EEESS.SS.EEEEEEETTSSEEEEEE CS WD40 6 tltGH.ss.vtslafspdgawlasGs 29 t +H s+ +++++ s ++++l+s + tr|F6U8U5|F6U8U5_CIOIN 56 TVFAHsSGeIWHISSSFNNPLLFSTC 81 555895448************98543 PP == domain 2 score: 23.5 bits; conditional E-value: 8e-07 SSSS.EEEEEEETTSSE.EEEEETTSEEEEEE CS WD40 9 GHss.vtslafspdgaw.lasGsdDgtvriWd 38 H+ +++l+f+p++++ la+++dD+ v++Wd tr|F6U8U5|F6U8U5_CIOIN 226 CHGQmIRDLDFNPNKQYhLATCGDDCLVKFWD 257 57446************66899*********9 PP == domain 3 score: 10.0 bits; conditional E-value: 0.014 SSSS.EEEEEEETTSSEEE..EEETTSEEEE CS WD40 9 GHss.vtslafspdgawla..sGsdDgtvri 36 Hs+ v++++f+p ++ l+ +Gs D v + tr|F6U8U5|F6U8U5_CIOIN 271 DHSHwVWGVRFNPFHDQLVlsCGS-DSRVVL 300 46445************7553556.998866 PP == domain 4 score: 10.4 bits; conditional E-value: 0.011 EEEEESS.SSEEEEEEETTSSEEEEE.ETTSEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasG.sdDgtvri 36 + +++ H +sv+++ +s +w +++ s+Dg + i tr|F6U8U5|F6U8U5_CIOIN 331 IAVYEEHeDSVYAVEWSAADPWSFASlSYDGRIVI 365 568999*999************7777789**9976 PP >> tr|F6VYZ5|F6VYZ5_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 10.8 0.0 0.0079 0.67 10 38 .] 458 489 .. 451 489 .. 0.72 2 ? 1.2 0.2 8.5 7.2e+02 10 37 .. 508 544 .. 501 545 .. 0.59 3 ! 18.6 0.2 2.8e-05 0.0024 2 38 .] 615 653 .. 614 653 .. 0.84 4 ! 12.0 0.1 0.0033 0.28 8 38 .] 665 695 .. 658 695 .. 0.85 5 ? 4.2 0.0 0.96 81 17 37 .. 718 739 .. 699 740 .. 0.74 Alignments for each domain: == domain 1 score: 10.8 bits; conditional E-value: 0.0079 S..SSEEEEEEETTSSE.EEEEETTSEEEEEE CS WD40 10 H..ssvtslafspdgaw.lasGsdDgtvriWd 38 H svt+l+fs+ + la G +Dgtv i++ tr|F6VYZ5|F6VYZ5_CIOIN 458 HskASVTALDFSSVYPNlLAVGLYDGTVCIYN 489 75345****966665552667867******97 PP == domain 2 score: 1.2 bits; conditional E-value: 8.5 S.SSEEEEEEETTSSE..............EEEE.ETTSEEEEE CS WD40 10 H.ssvtslafspdgaw..............lasG.sdDgtvriW 37 H s+v+ l+ w l+ + s Dg v W tr|F6VYZ5|F6VYZ5_CIOIN 508 HsSPVWQLC------WiererglgedrseiLI-SiSADGRVVQW 544 766699995......44444444444444344.33559999999 PP == domain 3 score: 18.6 bits; conditional E-value: 2.8e-05 EEEEEEESS.SSEEEEEEETTSSEEE.EEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawla.sGsdDgtvriWd 38 q l t+tGH ++ + +++sp+ + ++ s+s D ++r+W+ tr|F6VYZ5|F6VYZ5_CIOIN 615 QFLDTYTGHtGPLYKVRWSPYCPDVFlSCSSDWSIRLWK 653 67899****888****999999996448877*******6 PP == domain 4 score: 12.0 bits; conditional E-value: 0.0033 ESSSSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 8 tGHssvtslafspdgawlasGsdDgtvriWd 38 ++ + v+++++sp+++ ++++ g v iWd tr|F6VYZ5|F6VYZ5_CIOIN 665 STTKAVHDICWSPYSSTVFCAVNEGAVEIWD 695 44467**************9878*******9 PP == domain 5 score: 4.2 bits; conditional E-value: 0.96 E.EETTSSEEEEEETTSEEEEE CS WD40 17 a.fspdgawlasGsdDgtvriW 37 a fs +++ ++ G+ Dg+v ++ tr|F6VYZ5|F6VYZ5_CIOIN 718 AiFSLNSNSVLVGDSDGHVSVY 739 146668888888*66****997 PP >> tr|F6T2X1|F6T2X1_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 13.7 0.4 0.00098 0.083 9 38 .] 15 45 .. 9 45 .. 0.89 2 ! 11.8 2.4 0.0038 0.32 2 37 .. 53 91 .. 52 92 .. 0.78 3 ? 5.2 0.0 0.46 39 13 37 .. 120 146 .. 106 147 .. 0.73 4 ? 1.3 0.0 8.2 7e+02 12 33 .. 225 250 .. 218 252 .. 0.83 5 ! 17.8 0.0 5e-05 0.0042 2 38 .] 277 314 .. 276 314 .. 0.91 Alignments for each domain: == domain 1 score: 13.7 bits; conditional E-value: 0.00098 SSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 9 GHss.vtslafspdgawlasGsdDgtvriWd 38 H++ +++++f+ g+ +a++s D+ v +Wd tr|F6T2X1|F6T2X1_CIOIN 15 DHQDlIHDISFDLFGKRFATCSSDQCVQVWD 45 686679***************88*******9 PP == domain 2 score: 11.8 bits; conditional E-value: 0.0038 EEEEEEESS.SSEEEEEEETTSSE........EEEEETTSEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgaw........lasGsdDgtvriW 37 q++ +++H +sv+ + +w la++s D+t iW tr|F6T2X1|F6T2X1_CIOIN 53 QKTACWKTHsGSVWKV------TWahpqfgqvLATCSFDKTACIW 91 66677899*777*999......55556656659************ PP == domain 3 score: 5.2 bits; conditional E-value: 0.46 EEEEEEETTSSE..EEEEETTSEEEEE CS WD40 13 vtslafspdgaw..lasGsdDgtvriW 37 v +++f p + la++s++g vri+ tr|F6T2X1|F6T2X1_CIOIN 120 VKDVKFAPKHLGlqLATCSEKGVVRIY 146 5566444444445579**********8 PP == domain 4 score: 1.3 bits; conditional E-value: 8.2 SEEEEEEETTSSE....EEEEETTSE CS WD40 12 svtslafspdgaw....lasGsdDgt 33 +v++++f p+ a+ la +s+D + tr|F6T2X1|F6T2X1_CIOIN 225 PVSDVSFAPNPALkyhrLAVASKDLH 250 5999******9999998888888865 PP == domain 5 score: 17.8 bits; conditional E-value: 5e-05 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 q + +l H + vt+l+++ g+ l+s++ Dg + +W+ tr|F6T2X1|F6T2X1_CIOIN 277 QEVAVLPDHrCEVTGLSWNETGTGLISAGVDGQIFLWK 314 56788999*889***************99********6 PP >> tr|F6ZAP9|F6ZAP9_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.9 0.0 4.5e-05 0.0038 9 38 .] 15 44 .. 4 44 .. 0.83 2 ? 2.7 0.0 3 2.6e+02 12 37 .. 68 93 .. 57 94 .. 0.81 3 ? 6.5 0.1 0.18 15 6 34 .. 147 176 .. 142 177 .. 0.82 4 ? 4.5 0.0 0.82 69 15 38 .] 198 219 .. 185 219 .. 0.72 5 ? 3.9 0.0 1.2 1e+02 13 36 .. 285 308 .. 276 314 .. 0.77 Alignments for each domain: == domain 1 score: 17.9 bits; conditional E-value: 4.5e-05 SSSSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 9 GHssvtslafspdgawlasGsdDgtvriWd 38 G s +++la+sp+++ la ++ D+ + ++d tr|F6ZAP9|F6ZAP9_CIOIN 15 GASKICCLAWSPNNSKLAVCTSDRVILLYD 44 4555*************99955*****998 PP == domain 2 score: 2.7 bits; conditional E-value: 3 SEEEEEEETTSSEEEEE.ETTSEEEEE CS WD40 12 svtslafspdgawlasG.sdDgtvriW 37 sv ++afsp ++ +a G + D+ ++++ tr|F6ZAP9|F6ZAP9_CIOIN 68 SVKAIAFSPCSTKIALGqT-DNIIYVY 93 3999*********977855.9999987 PP == domain 3 score: 6.5 bits; conditional E-value: 0.18 EEESS.SSEEEEEEETTSSEEEEEETTSEE CS WD40 6 tltGH.ssvtslafspdgawlasGsdDgtv 34 t+ G s v sl ++++g+ ++sG+ Dgt+ tr|F6ZAP9|F6ZAP9_CIOIN 147 TIYGTeSYVVSLTNNQSGKGIISGHADGTL 176 4456756799******************97 PP == domain 4 score: 4.5 bits; conditional E-value: 0.82 EEEEETTSSEEEEEETTSEEEEEE CS WD40 15 slafspdgawlasGsdDgtvriWd 38 +l f +++ + +G+ D+ v +++ tr|F6ZAP9|F6ZAP9_CIOIN 198 CLPFLQNNIVV-AGC-DRRVVVYN 219 77666776665.6**.****9997 PP == domain 5 score: 3.9 bits; conditional E-value: 1.2 EEEEEEETTSSEEEEEETTSEEEE CS WD40 13 vtslafspdgawlasGsdDgtvri 36 +t+l++ +dg+ l++G+ g v + tr|F6ZAP9|F6ZAP9_CIOIN 285 ITALSWKRDGSRLCAGTLCGAVEL 308 9************99975444444 PP >> tr|F6WAZ5|F6WAZ5_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 11.8 0.1 0.0039 0.33 10 38 .] 60 88 .. 55 88 .. 0.67 2 ! 17.2 0.0 7.4e-05 0.0063 3 38 .] 96 132 .. 94 132 .. 0.93 3 ? 8.9 0.0 0.031 2.6 2 37 .. 184 220 .. 183 221 .. 0.86 Alignments for each domain: == domain 1 score: 11.8 bits; conditional E-value: 0.0039 S.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 10 H.ssvtslafspdgawlasGsdDgtvriWd 38 H +++t++a+ + ++++++s Dg+v++W+ tr|F6WAZ5|F6WAZ5_CIOIN 60 HrDNITHVAVTKT-DFVLTASCDGHVKFWK 88 5555666655444.44556666*******6 PP == domain 2 score: 17.2 bits; conditional E-value: 7.4e-05 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++++++H + +t++++s +g ++++ s D+ +++d tr|F6WAZ5|F6WAZ5_CIOIN 96 FVKHFRAHlGAITCMSVSYNGELMCTVSQDKAMKVFD 132 589*****999*************999*****99998 PP == domain 3 score: 8.9 bits; conditional E-value: 0.031 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 ++l++ + H + vt+++++p + +s+++ g + W tr|F6WAZ5|F6WAZ5_CIOIN 184 SPLHEVKVHqQEVTCIKYNPTFKTAISADKQGMLEYW 220 589******888********99999988888888777 PP >> tr|F6ZML6|F6ZML6_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.9 0.0 1.4e-07 1.1e-05 2 38 .] 2 39 .. 1 39 [. 0.91 2 ! 12.1 0.6 0.0032 0.27 3 31 .. 45 74 .. 43 119 .. 0.89 Alignments for each domain: == domain 1 score: 25.9 bits; conditional E-value: 1.4e-07 EEEEEEESS..SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH..ssvtslafspdgawlasGsdDgtvriWd 38 +++++l GH +++ ++ f++ g+++a+Gs D v +Wd tr|F6ZML6|F6ZML6_CIOIN 2 KLIQSLNGHtaNCI-CIEFDSTGKYFATGSADALVNLWD 39 67899****86668.999********************9 PP == domain 2 score: 12.1 bits; conditional E-value: 0.0032 EEEEEESSSS.EEEEEEETTSSEEEEEETT CS WD40 3 clrtltGHss.vtslafspdgawlasGsdD 31 c+rt++ ++ v+ l+fs++g++las+s+D tr|F6ZML6|F6ZML6_CIOIN 45 CVRTFSRLDWpVRTLSFSSNGQLLASASED 74 5566542222599*************9987 PP >> tr|F6UT21|F6UT21_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.4 0.1 0.022 1.8 7 38 .] 57 89 .. 51 89 .. 0.84 2 ? 4.1 0.0 1.1 92 13 38 .] 108 137 .. 95 137 .. 0.73 3 ! 21.2 0.0 4.3e-06 0.00036 14 38 .] 196 220 .. 185 220 .. 0.90 4 ? 6.7 0.0 0.16 14 10 31 .. 238 260 .] 225 260 .] 0.83 Alignments for each domain: == domain 1 score: 9.4 bits; conditional E-value: 0.022 EESS.SSEEEEE.EETTSSEEEEEETTSEEEEEE CS WD40 7 ltGH.ssvtsla.fspdgawlasGsdDgtvriWd 38 ++GH ++ s+a + g +++sG+ g ++iWd tr|F6UT21|F6UT21_CIOIN 57 FSGHqKPP-SVAkYANTGYYICSGDASGWIKIWD 89 78998886.6666899999*****99*******9 PP == domain 2 score: 4.1 bits; conditional E-value: 1.1 EEEEEEETTSSEEEEEET....TSEEEEEE CS WD40 13 vtslafspdgawlasGsd....DgtvriWd 38 v +++++ d++ +a +++ + +Wd tr|F6UT21|F6UT21_CIOIN 108 VKDISWDADSKRIAVCGEgrekYAHALLWD 137 899**********98873223366666665 PP == domain 3 score: 21.2 bits; conditional E-value: 4.3e-06 EEEEEETTSSEEEEEETTSEEEEEE CS WD40 14 tslafspdgawlasGsdDgtvriWd 38 ++++fspdg+++a +s Dg ++++d tr|F6UT21|F6UT21_CIOIN 196 NCVRFSPDGKYFAVCSSDGDIYLYD 220 8***********98877******98 PP == domain 4 score: 6.7 bits; conditional E-value: 0.16 S.SSEEEEEEETTSSEEEEEETT CS WD40 10 H.ssvtslafspdgawlasGsdD 31 H ++v+sl+f+ g+ l+s+s D tr|F6UT21|F6UT21_CIOIN 238 HkGGVYSLCFNATGTELLSASAD 260 8556*************999877 PP >> tr|F6QRG3|F6QRG3_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 12.2 0.0 0.0028 0.24 13 37 .. 933 959 .. 918 960 .. 0.82 2 ? 1.7 0.2 5.9 5e+02 25 38 .] 1002 1015 .. 989 1015 .. 0.78 3 ? 9.8 0.0 0.017 1.5 8 38 .] 1027 1056 .. 1020 1056 .. 0.79 4 ! 10.7 0.3 0.0085 0.72 7 38 .] 1069 1101 .. 1061 1101 .. 0.74 5 ? 10.4 0.0 0.011 0.94 3 35 .. 1109 1141 .. 1107 1142 .. 0.87 Alignments for each domain: == domain 1 score: 12.2 bits; conditional E-value: 0.0028 EEEEE..EETTSSEEEEEETTSEEEEE CS WD40 13 vtsla..fspdgawlasGsdDgtvriW 37 ++s++ +++d+a+l+ +sdDg +r+W tr|F6QRG3|F6QRG3_CIOIN 933 ISSVQliNQHDSALLVVASDDGCLRVW 959 5566666999*****999********* PP == domain 2 score: 1.7 bits; conditional E-value: 5.9 EEEEETTSEEEEEE CS WD40 25 lasGsdDgtvriWd 38 + +G+d +++ +Wd tr|F6QRG3|F6QRG3_CIOIN 1002 IYTGGDSRNIQVWD 1015 679**********9 PP == domain 3 score: 9.8 bits; conditional E-value: 0.017 ESS.SSEEEEEEETTSSE....EEEE.ETTSEEEEEE CS WD40 8 tGH.ssvtslafspdgaw....lasG.sdDgtvriWd 38 tG ssvt++ ++ l++G + Dgtvr++d tr|F6QRG3|F6QRG3_CIOIN 1027 TGAdSSVTCM------TLghglLTTGfG-DGTVRLFD 1056 4776789999......778886889955.******98 PP == domain 4 score: 10.7 bits; conditional E-value: 0.0085 EESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 7 ltGH.ssvtslafspdgawlasGsdDgtvriWd 38 + H ++v s f p+ ++++++s+ g +++Wd tr|F6QRG3|F6QRG3_CIOIN 1069 IHSHdTWVISTTFLPSTNMILTASEEGDIKLWD 1101 3345444545569*******************9 PP == domain 5 score: 10.4 bits; conditional E-value: 0.011 EEEEEESSSSEEEEEEETTSSEEEEEETTSEEE CS WD40 3 clrtltGHssvtslafspdgawlasGsdDgtvr 35 +lrt + s v+ l+++p+ + +a+Gs D+++ tr|F6QRG3|F6QRG3_CIOIN 1109 PLRTMRNTSAVRQLDVHPNLSIIACGSADHSIN 1141 7788886677********************995 PP >> tr|F6XFZ5|F6XFZ5_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 GN=LOC100175516 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.0 0.3 1.1e-06 9.4e-05 1 38 [] 55 94 .. 55 94 .. 0.86 2 ? 6.9 0.0 0.13 11 12 37 .. 201 230 .. 194 230 .. 0.86 3 ? 1.6 0.0 6.3 5.3e+02 13 36 .. 290 313 .. 281 314 .. 0.85 4 ? 10.0 0.1 0.015 1.2 9 37 .. 443 473 .. 433 474 .. 0.79 Alignments for each domain: == domain 1 score: 23.0 bits; conditional E-value: 1.1e-06 TEEEEEEESS.SSEEEEEEETTSSE..EEEEETTSEEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgaw..lasGsdDgtvriWd 38 g+c ++l GH + vt +a +p +++ + ++s Dgt+++Wd tr|F6XFZ5|F6XFZ5_CIOIN 55 GECCQKLVGHtDTVTMVAHHPCNKLqaI-TSSTDGTIKLWD 94 6899999***666************855.6666*******9 PP == domain 2 score: 6.9 bits; conditional E-value: 0.13 S....EEEEEEETTSSEEEEEETTSEEEEE CS WD40 12 s....vtslafspdgawlasGsdDgtvriW 37 + ++++a +p ++G+++g +r+W tr|F6XFZ5|F6XFZ5_CIOIN 201 PkepaIRCIACHPKLEQCVTGHENGELRFW 230 344569************************ PP == domain 3 score: 1.6 bits; conditional E-value: 6.3 EEEEEEETTSSEEEEEETTSEEEE CS WD40 13 vtslafspdgawlasGsdDgtvri 36 + l +s d+++ a+++ D+++ i tr|F6XFZ5|F6XFZ5_CIOIN 290 IQQLTTSNDNQLYATSHNDNSICI 313 667788999999999999***987 PP == domain 4 score: 10.0 bits; conditional E-value: 0.015 SS.SS.EEEEEEETTSSEEEEEETTSEEEEE CS WD40 9 GH.ss.vtslafspdgawlasGsdDgtvriW 37 H + +tsl f+p +a+ ++ +Dg + W tr|F6XFZ5|F6XFZ5_CIOIN 443 PHdNRnITSLTFHPTNALCVTTAEDGYAKTW 473 585448************999999**98877 PP >> tr|F6VUV2|F6VUV2_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.7 1.1 6e-06 0.00051 6 38 .] 146 178 .. 130 178 .. 0.76 2 ! 22.4 0.1 1.7e-06 0.00015 5 38 .] 224 258 .. 220 258 .. 0.91 3 ? 5.9 0.3 0.28 23 2 16 .. 263 281 .. 262 298 .. 0.76 Alignments for each domain: == domain 1 score: 20.7 bits; conditional E-value: 6e-06 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 6 tltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +l GH + v++l+++ + ++ sGs Dg + iW+ tr|F6VUV2|F6VUV2_CIOIN 146 ELCGHkQRVYCLQYDGNDKL-YSGSGDGQICIWN 178 34477555****99999999.89*88*******8 PP == domain 2 score: 22.4 bits; conditional E-value: 1.7e-06 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++++GH + v sla + +++l+sGs D+t r+W+ tr|F6VUV2|F6VUV2_CIOIN 224 KSYRGHtGAVFSLALNEAHDLLLSGSTDQTARLWK 258 789***777*************************6 PP == domain 3 score: 5.9 bits; conditional E-value: 0.28 EEEEEEESS.SS...EEEE CS WD40 2 qclrtltGH.ss...vtsl 16 ++l+++ GH ++ v+s+ tr|F6VUV2|F6VUV2_CIOIN 263 ETLHVFHGHdCWvkkVNSV 281 679******7667777777 PP >> tr|H2XYB7|H2XYB7_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 22.2 0.1 2.1e-06 0.00017 2 37 .. 48 84 .. 47 85 .. 0.88 2 ? 3.9 0.0 1.3 1.1e+02 16 35 .. 105 124 .. 92 124 .. 0.71 3 ! 11.3 0.0 0.0054 0.46 8 37 .. 180 210 .. 175 211 .. 0.91 Alignments for each domain: == domain 1 score: 22.2 bits; conditional E-value: 2.1e-06 EEEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEE CS WD40 2 qclrtltGHss.vtslafspdgawlasGsdDgtvriW 37 +++ l+GH++ v+++a+s d + l+s+++Dg v+ W tr|H2XYB7|H2XYB7_CIOIN 48 ENVSNLKGHNGkVRAIAWSADDSKLISSGMDGAVYEW 84 67889****666**************9999**99877 PP == domain 2 score: 3.9 bits; conditional E-value: 1.3 EEEETTSSE..EEEEETTSEEE CS WD40 16 lafspdgaw..lasGsdDgtvr 35 + +sp+g+ Gs D++++ tr|H2XYB7|H2XYB7_CIOIN 105 VTVSPSGKHtyA-VGS-DKSIK 124 446777777323.599.***97 PP == domain 3 score: 11.3 bits; conditional E-value: 0.0054 ESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 8 tGH.ssvtslafspdgawlasGsdDgtvriW 37 +H s +t ++ d ++l++ s+D ++iW tr|H2XYB7|H2XYB7_CIOIN 180 QAHaSQITKMKITYDDQFLITVSEDACLMIW 210 479777************************* PP >> tr|H2XXT9|H2XXT9_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.3 0.0 0.92 78 14 36 .. 58 80 .. 44 80 .. 0.87 2 ? 8.8 0.0 0.035 2.9 18 38 .] 104 123 .. 84 123 .. 0.62 3 ? 5.9 0.0 0.28 23 4 36 .. 132 165 .. 130 165 .. 0.84 4 ! 16.2 0.5 0.00016 0.014 9 38 .] 233 262 .. 226 262 .. 0.86 Alignments for each domain: == domain 1 score: 4.3 bits; conditional E-value: 0.92 EEEEEETTSSEEEEEETTSEEEE CS WD40 14 tslafspdgawlasGsdDgtvri 36 t+la++p +++la G++ gt+ri tr|H2XXT9|H2XXT9_CIOIN 58 TALAYDPVQKLLAIGTYTGTIRI 80 899************99****98 PP == domain 2 score: 8.8 bits; conditional E-value: 0.035 EETTSSEEEEEETTSEEEEEE CS WD40 18 fspdgawlasGsdDgtvriWd 38 + ga+++ + D t+++W+ tr|H2XXT9|H2XXT9_CIOIN 104 LNNQGALVSVCA-DDTIHLWN 123 344566666667.*******8 PP == domain 3 score: 5.9 bits; conditional E-value: 0.28 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvri 36 l++l+ +t+ ++ ++wl G+d+g+v++ tr|H2XXT9|H2XXT9_CIOIN 132 LHSLKFNrERITCTYIPHGSKWLYIGTDKGNVHL 165 677777766699999************9999975 PP == domain 4 score: 16.2 bits; conditional E-value: 0.00016 SSSSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 9 GHssvtslafspdgawlasGsdDgtvriWd 38 + +++++++++g+ +++++ Dg + +W+ tr|H2XXT9|H2XXT9_CIOIN 233 CNNTIHHVCWHHEGKQFMCSHNDGIISLWS 262 5567**************999********5 PP >> tr|F6PM95|F6PM95_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.1 0.1 2.1 1.8e+02 5 32 .. 52 77 .. 48 77 .. 0.70 2 ? 6.8 0.2 0.15 12 14 38 .] 110 134 .. 107 134 .. 0.90 3 ! 21.4 0.2 3.5e-06 0.0003 2 38 .] 139 174 .. 138 174 .. 0.82 4 ! 15.4 0.1 0.00028 0.024 8 37 .. 197 224 .. 180 225 .. 0.89 Alignments for each domain: == domain 1 score: 3.1 bits; conditional E-value: 2.1 EEEESS.SSEEEEEEETTSSEEEEEETTS CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDg 32 t+ +H ++++sl g++l+s++ Dg tr|F6PM95|F6PM95_CIOIN 52 FTFLAHsGPIHSL--VTAGKYLFSAG-DG 77 57779*777**99..55666666667.65 PP == domain 2 score: 6.8 bits; conditional E-value: 0.15 EEEEEETTSSEEEEEETTSEEEEEE CS WD40 14 tslafspdgawlasGsdDgtvriWd 38 +++++s + +++G+dDg + Wd tr|F6PM95|F6PM95_CIOIN 110 NCVRYSNKDNCIFAGGDDGITYKWD 134 79999999999999*****988887 PP == domain 3 score: 21.4 bits; conditional E-value: 3.5e-06 EEEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 +c + ++GH++ +++la +++ l+s+s+Dgtv+ Wd tr|F6PM95|F6PM95_CIOIN 139 KCKGRFSGHKDyIHDLAI--NSNNLVSASEDGTVKTWD 174 79999****666**9955..55557799*********9 PP == domain 4 score: 15.4 bits; conditional E-value: 0.00028 ESSSSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 8 tGHssvtslafspdgawlasGsdDgtvriW 37 tGH + +++a++ +g wla+G+ ++ +W tr|F6PM95|F6PM95_CIOIN 197 TGH-FMSCVAVDENGEWLACGG-GPHASLW 224 699.889**************9.9999999 PP >> tr|F6ZSL1|F6ZSL1_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.4 0.8 3.6e-06 0.0003 7 38 .] 185 217 .. 181 217 .. 0.88 2 ? 10.3 1.7 0.011 0.95 3 37 .. 223 263 .. 221 279 .. 0.69 3 ? 9.8 0.0 0.017 1.4 13 38 .] 279 309 .. 264 309 .. 0.70 4 ? 1.7 0.1 6.1 5.1e+02 7 27 .. 322 342 .. 315 352 .. 0.80 Alignments for each domain: == domain 1 score: 21.4 bits; conditional E-value: 3.6e-06 EESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 7 ltGH.ssvtslafspdgawlasGsdDgtvriWd 38 l H s +t+l+++ + ++sGs Dgt iWd tr|F6ZSL1|F6ZSL1_CIOIN 185 LHCHsSKITCLSVCGTYRIFVSGSQDGTAVIWD 217 5689555****99999999*************9 PP == domain 2 score: 10.3 bits; conditional E-value: 0.011 EEEEEESS.SSEEEEEEETTSSEEEEEET.....TSEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsd.....DgtvriW 37 +r+ltGH s+vt+l s+ + +++ +d ++r+W tr|F6ZSL1|F6ZSL1_CIOIN 223 YVRSLTGHaSDVTALTISRTSGDICTVCDsgndnGSHIRLW 263 589*****999****84433333333221222347777777 PP == domain 3 score: 9.8 bits; conditional E-value: 0.017 EEEEE..EETTSSE..EEEEE.TTSEEEEEE CS WD40 13 vtsla..fspdgaw..lasGs.dDgtvriWd 38 v+++a p+g+ +++G+ ++gtvr+W+ tr|F6ZSL1|F6ZSL1_CIOIN 279 VRCVAfsSAPEGTSvnVLAGGlENGTVRLWS 309 78887555555555665678768*******5 PP == domain 4 score: 1.7 bits; conditional E-value: 6.1 EESSSSEEEEEEETTSSEEEE CS WD40 7 ltGHssvtslafspdgawlas 27 + H+++ s+af +++ l + tr|F6ZSL1|F6ZSL1_CIOIN 322 QSVHNPIVSIAFTHNSMVLYA 342 46799999***9999987765 PP >> tr|F6Y0M4|F6Y0M4_CIOIN U3 small nucleolar RNA-associated protein 4 homolog OS=Ciona intestinalis OX=7719 GN=LOC10018 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 13.9 0.0 0.00085 0.072 12 37 .. 15 41 .. 2 42 .. 0.81 2 ! 13.3 0.2 0.0013 0.11 6 36 .. 96 124 .. 88 124 .. 0.86 3 ? 8.4 0.0 0.048 4 10 31 .. 141 163 .. 132 169 .. 0.76 4 ? 3.8 0.0 1.3 1.1e+02 9 36 .. 278 302 .. 272 302 .. 0.64 5 ? 3.7 0.0 1.4 1.2e+02 17 36 .. 427 452 .. 402 453 .. 0.75 Alignments for each domain: == domain 1 score: 13.9 bits; conditional E-value: 0.00085 S..EEEEEEETTSSEEEEE.ETTSEEEEE CS WD40 12 s..vtslafspdgawlasG.sdDgtvriW 37 + v ++a+s+++++ G s Dg++ iW tr|F6Y0M4|F6Y0M4_CIOIN 15 PraVQCIAVSDNSQLA-VGrS-DGSIEIW 41 35699**********6.5*66.******* PP == domain 2 score: 13.3 bits; conditional E-value: 0.0013 EEESSSSEEEEEEETTSSEEEEEETTSEEEE CS WD40 6 tltGHssvtslafspdgawlasGsdDgtvri 36 ++ G v++l sp ++ +a+G++Dg++++ tr|F6Y0M4|F6Y0M4_CIOIN 96 SFGGA--VWCLGLSPTHTHIAAGCEDGSIKM 124 45555..**********************95 PP == domain 3 score: 8.4 bits; conditional E-value: 0.048 S.SSEEEEEEETTSSEEEEEETT CS WD40 10 H.ssvtslafspdgawlasGsdD 31 + + + ++a++ +g+ +++Gs D tr|F6Y0M4|F6Y0M4_CIOIN 141 QeGRIMCMAWHESGDVIVTGSVD 163 434499***************54 PP == domain 4 score: 3.8 bits; conditional E-value: 1.3 SSSS......EEEEEEETTSSEEEEEETTSEEEE CS WD40 9 GHss......vtslafspdgawlasGsdDgtvri 36 +H + v++l ++sG+ D ++++ tr|F6Y0M4|F6Y0M4_CIOIN 278 TH-DvrslalVNDL--------IVSGGVDTNLMV 302 45.52234445555........99*****99876 PP == domain 5 score: 3.7 bits; conditional E-value: 1.4 E......EETTSSEEEEEETTSEEEE CS WD40 17 a......fspdgawlasGsdDgtvri 36 + fs+d++ ++++s +++v+i tr|F6Y0M4|F6Y0M4_CIOIN 427 SpshvirFSQDSNIMITASTNHKVMI 452 25555569********9999**9997 PP >> tr|F6XQ09|F6XQ09_CIOIN phosphoinositide 3-kinase regulatory subunit 4 OS=Ciona intestinalis OX=7719 GN=LOC100186582 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.2 0.1 0.00067 0.057 8 37 .. 948 978 .. 941 979 .. 0.83 2 ! 11.4 0.2 0.0052 0.44 9 36 .. 1001 1025 .. 994 1025 .. 0.80 3 ? 2.1 0.3 4.6 3.9e+02 10 29 .. 1100 1123 .. 1092 1132 .. 0.75 4 ? 7.9 0.1 0.068 5.8 24 38 .] 1218 1232 .. 1196 1232 .. 0.70 5 ! 18.0 0.2 4.1e-05 0.0035 6 38 .] 1302 1337 .] 1298 1337 .] 0.85 Alignments for each domain: == domain 1 score: 14.2 bits; conditional E-value: 0.00067 ESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 8 tGH.ssvtslafspdgawlasGsdDgtvriW 37 H ++++ + +sp+++ +++ s D+++r+W tr|F6XQ09|F6XQ09_CIOIN 948 LEHrGPIHRIGVSPSNHHFVTVSSDRSIRLW 978 468888**9999******998766******* PP == domain 2 score: 11.4 bits; conditional E-value: 0.0052 SSSSEEEEEEETTSSEEEEEETTSEEEE CS WD40 9 GHssvtslafspdgawlasGsdDgtvri 36 G v+++ fs + + ++ +sdDg++++ tr|F6XQ09|F6XQ09_CIOIN 1001 GA--VRCVTFSGNEQIVC-SSDDGSIHL 1025 44..************85.678****86 PP == domain 3 score: 2.1 bits; conditional E-value: 4.6 S...SSE.EEEEEETTSSEEEEEE CS WD40 10 H...ssv.tslafspdgawlasGs 29 H ++v t ++++p ++wl+ G+ tr|F6XQ09|F6XQ09_CIOIN 1100 HdlsNGVpTTFCVDPKQHWLCVGT 1123 544345889999********9886 PP == domain 4 score: 7.9 bits; conditional E-value: 0.068 EEEEEETTSEEEEEE CS WD40 24 wlasGsdDgtvriWd 38 + +G+ D+++r+Wd tr|F6XQ09|F6XQ09_CIOIN 1218 CMYTGGTDCKIRLWD 1232 3457999*******9 PP == domain 5 score: 18.0 bits; conditional E-value: 4.1e-05 EEESS.SS.EEEEE.EETTSSEEEEEETTSEEEEEE CS WD40 6 tltGH.ss.vtsla.fspdgawlasGsdDgtvriWd 38 + H ++ +t+la + ++++l+s s+Dg v+iW+ tr|F6XQ09|F6XQ09_CIOIN 1302 VVPSHhFDvITDLAiLNVNQNFLVSTSRDGVVKIWK 1337 5556657766**************99*********6 PP >> tr|H2XZN8|H2XZN8_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.0 0.4 0.03 2.6 23 38 .] 69 91 .. 39 91 .. 0.72 2 ! 24.3 0.3 4.3e-07 3.6e-05 2 38 .] 96 135 .. 95 135 .. 0.90 3 ! 13.1 0.3 0.0015 0.12 5 38 .] 145 180 .. 141 180 .. 0.65 Alignments for each domain: == domain 1 score: 9.0 bits; conditional E-value: 0.03 SE........EEEEETTSEEEEEE CS WD40 23 aw........lasGsdDgtvriWd 38 aw +++G+ Dg + iW+ tr|H2XZN8|H2XZN8_CIOIN 69 AWseidpdicVTAGG-DGAIQIWN 91 446666665567889.*******8 PP == domain 2 score: 24.3 bits; conditional E-value: 4.3e-07 EEEEEEESS.SSEEEEEEETTSSE..EEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgaw..lasGsdDgtvriWd 38 ++l +l+ H + v+s+++s+ g ++s s+Dg+ +iWd tr|H2XZN8|H2XZN8_CIOIN 96 DPLAVLKSHeKEVYSVDWSHKGEKnlVVSVSWDGSAKIWD 135 58999****999****99999999977788*********9 PP == domain 3 score: 13.1 bits; conditional E-value: 0.0015 EEEESSSS.E.EEEEEETTSSE.EEEEETTSEEEEEE CS WD40 5 rtltGHss.v.tslafspdgaw.lasGsdDgtvriWd 38 GH++ v +++ +sp+ + +a++s Dgt +iWd tr|H2XZN8|H2XZN8_CIOIN 145 SAVHGHQGvVySGV-WSPHVPGsFATASADGTSKIWD 180 55678866455566.33333335688999*******9 PP >> tr|F7A8S2|F7A8S2_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 GN=LOC100183227 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.5 0.0 0.044 3.7 13 38 .] 54 81 .. 47 81 .. 0.86 2 ! 13.8 0.0 0.00094 0.079 4 38 .] 169 204 .. 166 204 .. 0.83 3 ! 10.8 0.0 0.008 0.67 12 38 .] 271 298 .. 261 298 .. 0.79 Alignments for each domain: == domain 1 score: 8.5 bits; conditional E-value: 0.044 E.EEEEEETTSSEE.EEEETTSEEEEEE CS WD40 13 v.tslafspdgawl.asGsdDgtvriWd 38 v t ++ spdg+++ a+G++++ vr +d tr|F7A8S2|F7A8S2_CIOIN 54 VsTTVKMSPDGQYIfATGTYKPRVRCYD 81 6588999******7469999*****998 PP == domain 2 score: 13.8 bits; conditional E-value: 0.00094 EEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 l+++ + s+ +++ +p++++++ G+ Dg v Wd tr|F7A8S2|F7A8S2_CIOIN 169 LKSYATSSPeLNCVTINPEHHLVVVGGVDGRVECWD 204 55554444579************************9 PP == domain 3 score: 10.8 bits; conditional E-value: 0.008 S..EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 12 s..vtslafspdgawlasGsdDgtvriWd 38 ++s+af++d+ ++s sd + v++W+ tr|F7A8S2|F7A8S2_CIOIN 271 ElpINSIAFNDDNGIVIS-SDSRAVKLWK 298 1459***********996.66*******6 PP >> tr|F7BBJ6|F7BBJ6_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 11.9 0.1 0.0037 0.31 9 38 .] 269 300 .. 258 300 .. 0.75 2 ! 13.4 0.0 0.0012 0.1 5 36 .. 308 341 .. 304 343 .. 0.84 3 ? 9.1 0.0 0.027 2.3 21 38 .] 412 429 .. 388 429 .. 0.56 Alignments for each domain: == domain 1 score: 11.9 bits; conditional E-value: 0.0037 SS.SSEEEEEEETTSSE.EEEEETTSEEEEEE CS WD40 9 GH.ssvtslafspdgaw.lasGsdDgtvriWd 38 GH + v ++++++ ++ l+s+s D+ v +W+ tr|F7BBJ6|F7BBJ6_CIOIN 269 GHtDAVLDISWNSKSRNkLLSASADHMVALWN 300 9*666****966666666889999*******8 PP == domain 2 score: 13.4 bits; conditional E-value: 0.0012 EEEESSSS.EEEEEEETTSSE.EEEEETTSEEEE CS WD40 5 rtltGHss.vtslafspdgaw.lasGsdDgtvri 36 + +t H+ v +l++ pd++ l+sG Dg v i tr|F7BBJ6|F7BBJ6_CIOIN 308 KFFTSHKEkVQCLSWKPDSTNyLVSGAFDGRVVI 341 66899*555**********99999**88**9987 PP == domain 3 score: 9.1 bits; conditional E-value: 0.027 TSSEEEEEETTSEEEEEE CS WD40 21 dgawlasGsdDgtvriWd 38 +++l ++s Dg +++Wd tr|F7BBJ6|F7BBJ6_CIOIN 412 TSSLLYTASSDGRLKMWD 429 3334777766*******9 PP >> tr|H2XPX9|H2XPX9_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.8 0.0 0.62 52 13 38 .] 5 29 .. 2 29 .. 0.81 2 ! 11.1 0.0 0.0064 0.54 3 34 .. 174 206 .. 172 211 .. 0.87 3 ! 18.1 0.0 4.1e-05 0.0034 9 37 .. 224 254 .. 215 254 .. 0.81 Alignments for each domain: == domain 1 score: 4.8 bits; conditional E-value: 0.62 EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriWd 38 v++l f++d++ + ++s+D r+++ tr|H2XPX9|H2XPX9_CIOIN 5 VRHLHFNQDKSCF-TCSMDDGFRVYN 29 68999*******8.577788888776 PP == domain 2 score: 11.1 bits; conditional E-value: 0.0064 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtv 34 c t+ +H ++v ++a ++ g+ +a++s++gt+ tr|H2XPX9|H2XPX9_CIOIN 174 CPITINAHqTDVACIALNHQGTIVATASEKGTL 206 6667889*999*****************98886 PP == domain 3 score: 18.1 bits; conditional E-value: 4.1e-05 SS.SSE.EEEEEETTSSEEEEEETTSEEEEE CS WD40 9 GH.ssv.tslafspdgawlasGsdDgtvriW 37 G + v +++ fs+d+++l+++sd+gtv+i+ tr|H2XPX9|H2XPX9_CIOIN 224 GSdQAVlHCINFSKDSSYLCASSDKGTVHIF 254 66445779************99******995 PP >> tr|F7BML6|F7BML6_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.7 0.0 6.2 5.3e+02 10 29 .. 168 187 .. 158 206 .. 0.79 2 ? 9.8 0.0 0.017 1.4 6 38 .] 215 250 .. 210 250 .. 0.83 3 ? 6.0 0.3 0.26 22 9 37 .. 267 298 .. 259 299 .. 0.71 4 ! 13.5 0.5 0.0011 0.096 7 38 .] 360 398 .. 353 398 .. 0.78 5 ! 14.7 1.0 0.00047 0.04 2 33 .. 405 436 .. 404 443 .. 0.80 Alignments for each domain: == domain 1 score: 1.7 bits; conditional E-value: 6.2 SSS.EEEEEEETTSSEEEEEE CS WD40 10 Hss.vtslafspdgawlasGs 29 H vtsl++s +++ l+ +s tr|F7BML6|F7BML6_CIOIN 168 H-RvVTSLDWSTHHPELCVAS 187 4.447***9999998887666 PP == domain 2 score: 9.8 bits; conditional E-value: 0.017 EEESS..SSEEEEEEETTSSEEEEEE.TTSEEEEEE CS WD40 6 tltGH..ssvtslafspdgawlasGs.dDgtvriWd 38 ++t H ssvt+ +f + ++ l+ G+ + g + +Wd tr|F7BML6|F7BML6_CIOIN 215 EYTFHcqSSVTAACFAKFHPNLVVGGtYSGQIVMWD 250 577887577*****99999999988548*******9 PP == domain 3 score: 6.0 bits; conditional E-value: 0.26 SS.SSEEEEE..EETTSSEEEEEETTSEEEEE CS WD40 9 GH.ssvtsla..fspdgawlasGsdDgtvriW 37 +H +v++l+ ++ + l+s s Dg++ W tr|F7BML6|F7BML6_CIOIN 267 AHtHPVYCLDvvGTQNAHNLISVSTDGKLCSW 298 67446****9985555555666677***9999 PP == domain 4 score: 13.5 bits; conditional E-value: 0.0011 EESS.SSEEEEEEETTSSE......EEEEETTSEEEEEE CS WD40 7 ltGH.ssvtslafspdgaw......lasGsdDgtvriWd 38 ++GH ++v++++f+++ l+++s D ++++W+ tr|F7BML6|F7BML6_CIOIN 360 YEGHnGPVSGVDFHRSPGQldfshlLLTSSFDWSIKLWS 398 78**777****96666666666766667888*******5 PP == domain 5 score: 14.7 bits; conditional E-value: 0.00047 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgt 33 +cl+++ H ++v+++a+sp ++ l++++ D++ tr|F7BML6|F7BML6_CIOIN 405 TCLHSFQDHsDCVYDVAWSPVHPALFASG-DCS 436 7********555************98777.665 PP >> tr|F6Q6I4|F6Q6I4_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 12.3 0.0 0.0027 0.23 13 36 .. 17 40 .. 10 40 .. 0.88 2 ? 8.3 0.0 0.05 4.2 5 37 .. 66 99 .. 63 100 .. 0.83 3 ? 5.7 0.0 0.33 28 12 34 .. 117 140 .. 108 148 .. 0.84 4 ? 8.5 0.1 0.042 3.6 13 38 .] 160 185 .. 143 185 .. 0.88 Alignments for each domain: == domain 1 score: 12.3 bits; conditional E-value: 0.0027 EEEEEEETTSSEEEEEETTSEEEE CS WD40 13 vtslafspdgawlasGsdDgtvri 36 +++++++++ ++a+G+dDg +++ tr|F6Q6I4|F6Q6I4_CIOIN 17 LHCISWNKEHGYIACGGDDGLLKV 40 48******************9986 PP == domain 2 score: 8.3 bits; conditional E-value: 0.05 EEEESSSS.EEEEEEETTSSEEEEEETTSEEEEE CS WD40 5 rtltGHss.vtslafspdgawlasGsdDgtvriW 37 +t +GH++ v + ++ + + l+s++++g + +W tr|F6Q6I4|F6Q6I4_CIOIN 66 QTMEGHNGiVKVVTWNNHYQKLTSSDEKGLIIVW 99 5789**884577769999999*98889******9 PP == domain 3 score: 5.7 bits; conditional E-value: 0.33 S.EEEEEEETTSSEEEEEETTSEE CS WD40 12 s.vtslafspdgawlasGsdDgtv 34 s v+s++++ dg+ ++ + +Dg v tr|F6Q6I4|F6Q6I4_CIOIN 117 SiVRSMCWNADGQKICIAYEDGAV 140 447***********9988889877 PP == domain 4 score: 8.5 bits; conditional E-value: 0.042 EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriWd 38 t +a+spdg+ ++ G+ g v+i+d tr|F6Q6I4|F6Q6I4_CIOIN 160 LTNVAWSPDGKIILFGTTSGEVHIYD 185 5889********98798899999998 PP >> tr|A0A1W3JPZ4|A0A1W3JPZ4_CIOIN prolactin regulatory element-binding protein-like OS=Ciona intestinalis OX=7719 GN=LO # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.1 0.1 0.00075 0.063 14 38 .] 160 184 .. 143 184 .. 0.77 2 ! 16.2 0.3 0.00016 0.013 8 38 .] 195 226 .. 188 226 .. 0.89 3 ? 9.1 0.0 0.027 2.3 8 36 .. 312 340 .. 306 341 .. 0.83 4 ? 3.4 0.1 1.8 1.5e+02 5 34 .. 350 392 .. 346 394 .. 0.68 Alignments for each domain: == domain 1 score: 14.1 bits; conditional E-value: 0.00075 EEEEEETTSSEEEEEETTSEEEEEE CS WD40 14 tslafspdgawlasGsdDgtvriWd 38 t+++ s++g++l++G Dg++r W+ tr|A0A1W3JPZ4|A0A1W3JPZ4_CIOIN 160 TAVRLSHNGSLLVAGASDGHLRAWK 184 88999**********66*****995 PP == domain 2 score: 16.2 bits; conditional E-value: 0.00016 ESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 8 tGH.ssvtslafspdgawlasGsdDgtvriWd 38 +GH +++t+++ d + ++s s+Dg+ +Wd tr|A0A1W3JPZ4|A0A1W3JPZ4_CIOIN 195 KGHkDDITDIDITNDASQIVSVSRDGKAFLWD 226 6**777**************99*********9 PP == domain 3 score: 9.1 bits; conditional E-value: 0.027 ESSSSEEEEEEETTSSEE.EEEETTSEEEE CS WD40 8 tGHssvtslafspdgawl.asGsdDgtvri 36 tGH +++la+s+dg ++ + G +Dg+v i tr|A0A1W3JPZ4|A0A1W3JPZ4_CIOIN 312 TGHEAISALAVSDDGVFVgL-GFMDGSVGI 340 7**88************744.678**9966 PP == domain 4 score: 3.4 bits; conditional E-value: 1.8 EEEE.SSSS..EEEEEEETTSSE...........EEEEETTSEE CS WD40 5 rtlt.GHss..vtslafspdgaw...........lasGsdDgtv 34 ++ + H s vtsl+f +++++ ++s s D+t+ tr|A0A1W3JPZ4|A0A1W3JPZ4_CIOIN 350 KHVKnVH-SifVTSLSFVKESPLsrvtmgdydtaIVSVSADCTC 392 5554467.3469***98877777777777777776666779987 PP >> tr|F6QZI8|F6QZI8_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 GN=LOC100181007 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.9 0.0 2.5 2.1e+02 6 38 .] 504 535 .. 500 535 .. 0.84 2 ! 12.0 0.3 0.0033 0.28 13 38 .] 628 651 .. 621 651 .. 0.84 3 ? 5.2 0.0 0.47 40 8 37 .. 741 769 .. 732 770 .. 0.72 4 ! 11.9 0.1 0.0036 0.31 9 38 .] 782 811 .. 775 811 .. 0.69 5 ? 8.3 0.1 0.05 4.3 3 38 .] 817 851 .. 815 851 .. 0.76 6 ? 2.7 0.4 2.9 2.5e+02 23 38 .] 877 891 .. 871 891 .. 0.93 Alignments for each domain: == domain 1 score: 2.9 bits; conditional E-value: 2.5 EEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 6 tltGHss.vtslafspdgawlasGsdDgtvriWd 38 +l GHs + ++ +g+ ++s++ +++Wd tr|F6QZI8|F6QZI8_CIOIN 504 VLAGHSQlIECV--RAEGTNVISSDISSELKVWD 535 5779*5579***..99999999877799999998 PP == domain 2 score: 12.0 bits; conditional E-value: 0.0033 EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriWd 38 v++l ga++++G+dDg++ +Wd tr|F6QZI8|F6QZI8_CIOIN 628 VWCL--TMCGAMIVTGCDDGSLEVWD 651 6777..5567889************9 PP == domain 3 score: 5.2 bits; conditional E-value: 0.47 ESS.SSEEEEEEETTSSE....EEEEETTSEEEEE CS WD40 8 tGH.ssvtslafspdgaw....lasGsdDgtvriW 37 ++H ++++++ ++ +++Gs D+t++++ tr|F6QZI8|F6QZI8_CIOIN 741 SAHqQPISAF------KMalgrVLTGSCDHTLKLF 769 3887778877......666677779*99*****96 PP == domain 4 score: 11.9 bits; conditional E-value: 0.0036 SS.SSEEEEEEETTSSE......EEEEETTSEEEEEE CS WD40 9 GH.ssvtslafspdgaw......lasGsdDgtvriWd 38 GH +++t l + +sGs Dg vr+Wd tr|F6QZI8|F6QZI8_CIOIN 782 GHiGPITVL-------YmdkatgAVSGSTDGCVRLWD 811 888888666.......2233335579*99*******9 PP == domain 5 score: 8.3 bits; conditional E-value: 0.05 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 cl++ + H + +t+++ s ++ ++s D+ + iW+ tr|F6QZI8|F6QZI8_CIOIN 817 CLHKMEEHaGAITAVQCSTSH--VLSTAQDNRLCIWS 851 99******777****444444..446677*******5 PP == domain 6 score: 2.7 bits; conditional E-value: 2.9 SEEEEEETTSEEEEEE CS WD40 23 awlasGsdDgtvriWd 38 +w ++G+ g++ +Wd tr|F6QZI8|F6QZI8_CIOIN 877 SWCVTGG-SGSLLLWD 891 6999***.*******9 PP >> tr|F6ZEC7|F6ZEC7_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.4 0.4 0.097 8.2 18 38 .] 11 31 .. 5 31 .. 0.84 2 ! 21.8 0.0 2.6e-06 0.00022 3 38 .] 37 74 .. 35 74 .. 0.84 3 ! 11.2 0.5 0.0061 0.52 4 32 .. 87 113 .. 83 128 .. 0.74 Alignments for each domain: == domain 1 score: 7.4 bits; conditional E-value: 0.097 EETTSSEEEEEETTSEEEEEE CS WD40 18 fspdgawlasGsdDgtvriWd 38 + d + +++++ D ++++W+ tr|F6ZEC7|F6ZEC7_CIOIN 11 WTCDDQHIMTSHSDFSIKVWK 31 666888899**88*******6 PP == domain 2 score: 21.8 bits; conditional E-value: 2.6e-06 EEEEEESS.SSEEEEE.EETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtsla.fspdgawlasGsdDgtvriWd 38 +l++l+GH + ++l + dg+ l+s++ Dg++ +Wd tr|F6ZEC7|F6ZEC7_CIOIN 37 LLHVLKGHeDEAYCLEaHPNDGRILLSAGHDGKIFLWD 74 79******7779****77777888777666*******9 PP == domain 3 score: 11.2 bits; conditional E-value: 0.0061 EEEEESSSSEEEEEEETTSSEEEEEETTS CS WD40 4 lrtltGHssvtslafspdgawlasGsdDg 32 l + GH+ v + +fsp g+ +a ++ D tr|F6ZEC7|F6ZEC7_CIOIN 87 LLVGQGHGAVFDAKFSPTGNHIA-CT-DS 113 556689*88************97.55.33 PP >> tr|H2Y1F1|H2Y1F1_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.0 0.0 4.3e-05 0.0036 7 38 .] 47 80 .. 40 80 .. 0.80 2 ! 11.6 0.0 0.0043 0.37 10 35 .. 99 125 .. 93 128 .. 0.85 3 ? 2.5 0.0 3.5 3e+02 13 36 .. 144 168 .. 136 170 .. 0.74 Alignments for each domain: == domain 1 score: 18.0 bits; conditional E-value: 4.3e-05 EESS.SSEEEEEEETTSSE.EEEEETTSEEEEEE CS WD40 7 ltGH.ssvtslafspdgaw.lasGsdDgtvriWd 38 l H ++v++l fs+ ++ lasG+dD+ v +W+ tr|H2Y1F1|H2Y1F1_CIOIN 47 LIVHfGCVNALEFSKKNKEyLASGGDDKRVLLWN 80 6679777****955555555*************8 PP == domain 2 score: 11.6 bits; conditional E-value: 0.0043 S.SSEEEEEEETTSSEEEEEETTSEEE CS WD40 10 H.ssvtslafspdgawlasGsdDgtvr 35 H s++ +l+f d+++l+s++ D v tr|H2Y1F1|H2Y1F1_CIOIN 99 HiSNIFCLDFTADNQYLLSSGNDEQVI 125 8888*************9988787765 PP == domain 3 score: 2.5 bits; conditional E-value: 3.5 EEEEEEETTSSEE.EEEETTSEEEE CS WD40 13 vtslafspdgawl.asGsdDgtvri 36 + +++ +p+ + l +++s+Dg+v + tr|H2Y1F1|H2Y1F1_CIOIN 144 IFAISAHPELPTLfLTASEDGKVSL 168 56666666667752599****9976 PP >> tr|F6YUN5|F6YUN5_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.3 0.4 0.024 2 6 38 .] 176 210 .. 172 210 .. 0.74 2 ! 20.6 0.2 6.5e-06 0.00055 8 38 .] 222 254 .. 213 254 .. 0.75 3 ? 10.0 0.5 0.014 1.2 6 38 .] 311 349 .. 307 349 .. 0.61 Alignments for each domain: == domain 1 score: 9.3 bits; conditional E-value: 0.024 EEESS.SS..EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 6 tltGH.ss..vtslafspdgawlasGsdDgtvriWd 38 + +H + +t++ +s + + l sG+dD+ r Wd tr|F6YUN5|F6YUN5_CIOIN 176 QWNAHgFEawITAF-NSENDSVLYSGGDDCCFRGWD 210 56688522669999.666666679*********998 PP == domain 2 score: 20.6 bits; conditional E-value: 6.5e-06 ESS.SSEEEEE.EETTSSEEEEEETTSEEEEEE CS WD40 8 tGH.ssvtsla.fspdgawlasGsdDgtvriWd 38 + H +v+s++ ++++++la+G++D +vriWd tr|F6YUN5|F6YUN5_CIOIN 222 RSHdMGVCSIQsCPSNSNLLATGGYDEHVRIWD 254 567444888885577777789***********9 PP == domain 3 score: 10.0 bits; conditional E-value: 0.014 EEESSSS....E.EEEEEETTSSEEEEEE.TTSEEEEEE CS WD40 6 tltGHss....v.tslafspdgawlasGs.dDgtvriWd 38 ++t H+s + ++ ++ +++las+s +D+++ +W+ tr|F6YUN5|F6YUN5_CIOIN 311 HYTNHQSlaygIdWCYLENSVSHFLASCSfYDHKLCLWN 349 6677755433333222233334559999768*******8 PP >> tr|H2XLX0|H2XLX0_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.0 0.0 1.1 94 13 25 .. 154 167 .. 145 178 .. 0.76 2 ? 6.9 0.0 0.13 11 7 36 .. 233 263 .. 227 265 .. 0.80 3 ! 21.3 0.4 3.8e-06 0.00032 13 38 .] 282 307 .. 271 307 .. 0.85 4 ? 1.2 0.0 8.5 7.2e+02 7 16 .. 317 327 .. 311 328 .] 0.79 Alignments for each domain: == domain 1 score: 4.0 bits; conditional E-value: 1.1 EEEEEEETTSSE.E CS WD40 13 vtslafspdgaw.l 25 vt++++ p++ l tr|H2XLX0|H2XLX0_CIOIN 154 VTCVRWFPNSENtL 167 9****999987653 PP == domain 2 score: 6.9 bits; conditional E-value: 0.13 EESS.SSEEEEEEETTSSEEEEEETTSEEEE CS WD40 7 ltGH.ssvtslafspdgawlasGsdDgtvri 36 t+ s+v+ ++fsp g+++a + +g +ri tr|H2XLX0|H2XLX0_CIOIN 233 MTTDgSGVHNFSFSPCGRFIAIVTQNGYLRI 263 4444457*************98888999988 PP == domain 3 score: 21.3 bits; conditional E-value: 3.8e-06 EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriWd 38 s+++spdg+++++G++D + +W+ tr|H2XLX0|H2XLX0_CIOIN 282 LLSCCWSPDGRYVVTGGEDDLISVWS 307 66899********************5 PP == domain 4 score: 1.2 bits; conditional E-value: 8.5 EESS.SSEEEE CS WD40 7 ltGH.ssvtsl 16 +GH s+v+++ tr|H2XLX0|H2XLX0_CIOIN 317 GRGHkSWVNDV 327 58**777**99 PP >> tr|F6TEZ1|F6TEZ1_CIOIN Actin-related protein 2/3 complex subunit OS=Ciona intestinalis OX=7719 GN=LOC100182145 PE=3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.0 0.7 9.8e-06 0.00083 2 37 .. 44 80 .. 43 81 .. 0.90 2 ! 12.1 0.1 0.0032 0.27 12 36 .. 141 169 .. 130 171 .. 0.76 3 ? 3.1 0.2 2.2 1.8e+02 9 26 .. 205 220 .. 197 228 .. 0.78 4 ? 1.9 0.2 5.3 4.5e+02 10 32 .. 224 265 .. 216 270 .. 0.62 5 ! 10.8 0.2 0.0079 0.67 10 38 .] 324 352 .. 316 352 .. 0.71 Alignments for each domain: == domain 1 score: 20.0 bits; conditional E-value: 9.8e-06 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 ++++tl+ H vt++++ p + +++++ D++ ++W tr|F6TEZ1|F6TEZ1_CIOIN 44 DHIHTLSEHtLKVTDIDWAPKTNRIVTCGADRNAYVW 80 689******544***************999******* PP == domain 2 score: 12.1 bits; conditional E-value: 0.0032 S....EEEEEEETTSSEEEEEETTSEEEE CS WD40 12 s....vtslafspdgawlasGsdDgtvri 36 + + sl+++p++ +la+G+ D + ++ tr|F6TEZ1|F6TEZ1_CIOIN 141 PirstIVSLDWHPNNILLAAGCCDYKAYV 169 3444578**************77987665 PP == domain 3 score: 3.1 bits; conditional E-value: 2.2 SSSSEEEEEEETTSSEEE CS WD40 9 GHssvtslafspdgawla 26 G +v+++afs +g+ la tr|F6TEZ1|F6TEZ1_CIOIN 205 G--WVHGIAFSNSGDCLA 220 4..49**********986 PP == domain 4 score: 1.9 bits; conditional E-value: 5.3 SSSEEEEE....................EETTSSEEEEEETTS CS WD40 10 Hssvtsla....................fspdgawlasGsdDg 32 H+sv s+a + +++ +a G+ D+ tr|F6TEZ1|F6TEZ1_CIOIN 224 HGSVLSVAkgggeltsirteflpfndcvWFGENSIIA-GGHDC 265 6667677666666666667755555555666666665.66587 PP == domain 5 score: 10.8 bits; conditional E-value: 0.0079 S.SS.E.EEEEEETTSSE.EEEEETTSEEEEEE CS WD40 10 H.ss.v.tslafspdgaw.lasGsdDgtvriWd 38 H + + ++ +g+ ++++++Dg+v +Wd tr|F6TEZ1|F6TEZ1_CIOIN 324 HkNAiIqVCV----YGPHqFSTCGKDGNVVVWD 352 7555433455....55555689**********9 PP >> tr|H2XTJ6|H2XTJ6_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 11.8 0.1 0.004 0.34 5 35 .. 47 78 .. 39 79 .. 0.74 2 ? 5.2 0.1 0.46 39 10 37 .. 96 123 .. 85 124 .. 0.79 3 ! 11.2 0.3 0.0059 0.5 4 38 .] 133 174 .. 130 174 .. 0.67 4 ? 10.4 0.1 0.011 0.93 12 31 .. 234 254 .. 222 269 .. 0.71 Alignments for each domain: == domain 1 score: 11.8 bits; conditional E-value: 0.004 EEEESS.SSEEEEEEETTSSEEEEEETTSEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvr 35 +++t svt++a+ + + +a G Dg++ tr|H2XTJ6|H2XTJ6_CIOIN 47 THCTRNkASVTCVAWFGEDQQFAVGFADGKIV 78 344444344*****9999999999*88**996 PP == domain 2 score: 5.2 bits; conditional E-value: 0.46 SSSEEEEEEETTSSEEEEEET..TSEEEEE CS WD40 10 HssvtslafspdgawlasGsd..DgtvriW 37 H v la++p g+ la ++ +v+iW tr|H2XTJ6|H2XTJ6_CIOIN 96 H-EVIQLAWDPTGSHLA-VHEalQSNVKIW 123 3.456899*******97.686669999999 PP == domain 3 score: 11.2 bits; conditional E-value: 0.0059 EEEEESS.SSEEEEEEETTSSE.......EEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgaw.......lasGsdDgtvriWd 38 ++tl+ H + vt++ ++p + ++ G++Dg v +W+ tr|H2XTJ6|H2XTJ6_CIOIN 133 IYTLK-HnTTVTAMLWCPVADSsvsnfltFVIGGKDGMVNVWN 174 56676.74569999755555555555555345**********8 PP == domain 4 score: 10.4 bits; conditional E-value: 0.011 S.EEEEEEETTSSEEEEEETT CS WD40 12 s.vtslafspdgawlasGsdD 31 + +t ++f+p +++la+G+ tr|H2XTJ6|H2XTJ6_CIOIN 234 GaITTIQFNPTSDLLATGGNT 254 249***************853 PP >> tr|F7ADJ3|F7ADJ3_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.3 0.1 1.8 1.6e+02 26 38 .] 2 14 .. 1 14 [. 0.87 2 ? 8.0 0.0 0.06 5.1 9 38 .] 179 210 .. 171 210 .. 0.87 3 ! 18.6 0.1 2.7e-05 0.0023 4 37 .. 263 297 .. 261 298 .. 0.84 Alignments for each domain: == domain 1 score: 3.3 bits; conditional E-value: 1.8 EEEETTSEEEEEE CS WD40 26 asGsdDgtvriWd 38 a++s+Dg + +W+ tr|F7ADJ3|F7ADJ3_CIOIN 2 ATASYDGDIFVWS 14 78999*******5 PP == domain 2 score: 8.0 bits; conditional E-value: 0.06 SS.SS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 9 GH.ss.vtslafspdgawlasGsdDgtvriWd 38 +H + v ++ ++ d+ l++G+ g +++Wd tr|F7ADJ3|F7ADJ3_CIOIN 179 AHkNEvVLAMETDEDSEILITGDSRGYIKMWD 210 79666669999***********66*******9 PP == domain 3 score: 18.6 bits; conditional E-value: 2.7e-05 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 +++l+GH + vts+ + ++ ++ +Gs D++vr+W tr|F7ADJ3|F7ADJ3_CIOIN 263 IWSLRGHtKAVTSIVYIEEKELIGTGSTDCSVRLW 297 689****999****66666666658999******* PP >> tr|F7BL69|F7BL69_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 10.7 0.0 0.0084 0.71 17 36 .. 63 82 .. 48 82 .. 0.92 2 ! 18.3 0.4 3.5e-05 0.003 5 38 .] 92 127 .. 88 127 .. 0.82 3 ? 2.0 0.0 4.7 4e+02 13 38 .] 147 171 .. 136 171 .. 0.87 Alignments for each domain: == domain 1 score: 10.7 bits; conditional E-value: 0.0084 EEETTSSEEEEEETTSEEEE CS WD40 17 afspdgawlasGsdDgtvri 36 afspd++++as++ D++++i tr|F7BL69|F7BL69_CIOIN 63 AFSPDNRLIASCHGDHNIYI 82 59**********88***987 PP == domain 2 score: 18.3 bits; conditional E-value: 3.5e-05 EEEESS.SSEEEEEEETTSSEE.EEEETTSEEEEEE CS WD40 5 rtltGH.ssvtslafspdgawl.asGsdDgtvriWd 38 +l GH s ++l+f+p+++ + a+G+ +g vr+Wd tr|F7BL69|F7BL69_CIOIN 92 NSLVGHsRSPWCLSFHPSSNDIiATGCLNGEVRVWD 127 5789**64489***9999999626999********9 PP == domain 3 score: 2.0 bits; conditional E-value: 4.7 EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriWd 38 + sl+f+p + l+ + + +++Wd tr|F7BL69|F7BL69_CIOIN 147 IASLSFHPTDHVLLIAA-GNEIHFWD 171 56999*******99889.99999998 PP >> tr|F6Y5P5|F6Y5P5_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.0 0.0 0.015 1.3 9 35 .. 63 90 .. 54 91 .. 0.73 2 ! 13.8 0.6 0.00089 0.076 6 38 .] 105 134 .. 100 134 .. 0.74 3 ? 10.5 0.1 0.01 0.85 4 38 .] 142 177 .. 139 177 .. 0.81 Alignments for each domain: == domain 1 score: 10.0 bits; conditional E-value: 0.015 SSSSEEEEEEETTSSEEEEEE.TTSEEE CS WD40 9 GHssvtslafspdgawlasGs.dDgtvr 35 G ++v +l++spdg+++++++ +D v+ tr|F6Y5P5|F6Y5P5_CIOIN 63 GYGGVFGLKYSPDGKLVVAACeRDAVVM 90 334599**********986652576665 PP == domain 2 score: 13.8 bits; conditional E-value: 0.00089 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 6 tltGH.ssvtslafspdgawlasGsdDgtvriWd 38 + t H + ++ + d+ +++++sdDg+v iWd tr|F6Y5P5|F6Y5P5_CIOIN 105 VHTKHcNTISFI----DNLLFTTCSDDGNVAIWD 134 444676667777....6666789**********9 PP == domain 3 score: 10.5 bits; conditional E-value: 0.01 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 + +l GH s+v + +++ ++ l+s++ D ++ Wd tr|F6Y5P5|F6Y5P5_CIOIN 142 VLKLCGHtSWVKNVEYHKPSKCLVSAGFDDNIITWD 177 56778**888*****999999999877788888887 PP >> tr|F6UW46|F6UW46_CIOIN Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B OS=Ciona intestinalis OX= # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.6 0.0 0.084 7.1 13 37 .. 33 57 .. 17 58 .. 0.83 2 ? 7.0 0.0 0.13 11 23 38 .] 111 125 .. 77 125 .. 0.74 3 ? 6.9 0.0 0.14 12 9 38 .] 178 207 .. 170 207 .. 0.81 4 ? 2.2 0.0 4.1 3.5e+02 23 36 .. 244 256 .. 229 258 .. 0.81 5 ? 5.9 0.2 0.28 24 11 38 .] 289 315 .. 281 315 .. 0.87 Alignments for each domain: == domain 1 score: 7.6 bits; conditional E-value: 0.084 EEEEEEETTSSEEEEEETTSEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriW 37 ++ + f++dg +la+G++ g v i+ tr|F6UW46|F6UW46_CIOIN 33 ISTVEFNHDGELLATGDKGGRVVIF 57 68999***********988888875 PP == domain 2 score: 7.0 bits; conditional E-value: 0.13 SEEEEEETTSEEEEEE CS WD40 23 awlasGsdDgtvriWd 38 ++l+s D+tv++W+ tr|F6UW46|F6UW46_CIOIN 111 HFLLSTN-DKTVKLWK 125 4578666.*******6 PP == domain 3 score: 6.9 bits; conditional E-value: 0.14 SS.SSEEEEE.EETTSSEEEEEETTSEEEEEE CS WD40 9 GH.ssvtsla.fspdgawlasGsdDgtvriWd 38 +H +++s++ +s+d ++l s++ D + +W+ tr|F6UW46|F6UW46_CIOIN 178 AHmYHINSISvNSDDETYL-SAD-DLRINLWN 207 6766799999899999998.677.*******8 PP == domain 4 score: 2.2 bits; conditional E-value: 4.1 SEEEEEETTSEEEE CS WD40 23 awlasGsdDgtvri 36 +++ s+s +gt+r+ tr|F6UW46|F6UW46_CIOIN 244 TFVYSSS-KGTIRL 256 6699999.*****8 PP == domain 5 score: 5.9 bits; conditional E-value: 0.28 SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 11 ssvtslafspdgawlasGsdDgtvriWd 38 ss+++++fs++g+++++ d ++ +Wd tr|F6UW46|F6UW46_CIOIN 289 SSISDVKFSHSGRYMIT-RDYLSINVWD 315 46999*********995.8899999998 PP >> tr|F6YXX9|F6YXX9_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.3 0.0 7.8 6.6e+02 11 20 .. 310 319 .. 294 330 .. 0.80 2 ! 12.0 0.0 0.0033 0.28 7 38 .] 367 399 .. 361 399 .. 0.85 3 ! 12.3 0.4 0.0027 0.23 12 38 .] 451 494 .. 443 494 .. 0.65 4 ? 4.3 0.0 0.89 75 25 38 .] 729 741 .. 710 741 .. 0.78 Alignments for each domain: == domain 1 score: 1.3 bits; conditional E-value: 7.8 SSEEEEEEET CS WD40 11 ssvtslafsp 20 + vt+++++p tr|F6YXX9|F6YXX9_CIOIN 310 KTVTCVDWHP 319 349***8887 PP == domain 2 score: 12.0 bits; conditional E-value: 0.0033 EESSSSEEEEEEETTSSEEEEEE.TTSEEEEEE CS WD40 7 ltGHssvtslafspdgawlasGs.dDgtvriWd 38 l+G +++++++f+p ++ +++G+ +g + +Wd tr|F6YXX9|F6YXX9_CIOIN 367 LEGPDDICCFKFCPTNPNIVAGGcINGQLVLWD 399 667778**************99626*******9 PP == domain 3 score: 12.3 bits; conditional E-value: 0.0027 SEEEEEEETTSSE.................EEEEETTSEEEEEE CS WD40 12 svtslafspdgaw.................lasGsdDgtvriWd 38 ++s+++ pd+ +++++ Dg+v++Wd tr|F6YXX9|F6YXX9_CIOIN 451 IISSVDWLPDHYElnrfgipvenrlseccqIMTCGTDGHVMVWD 494 456665444444466666666666666666777777*******9 PP == domain 4 score: 4.3 bits; conditional E-value: 0.89 EEEEETTSEEEEEE CS WD40 25 lasGsdDgtvriWd 38 ++ G++Dg+v +Wd tr|F6YXX9|F6YXX9_CIOIN 729 FL-GTKDGNVEVWD 741 44.999*******9 PP >> tr|F6SNN1|F6SNN1_CIOIN nucleoporin Nup37 OS=Ciona intestinalis OX=7719 GN=LOC100184979 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.9 0.0 0.14 12 3 23 .. 55 84 .. 53 95 .. 0.74 2 ! 26.2 0.0 1.1e-07 9.5e-06 5 38 .] 117 152 .. 112 152 .. 0.77 Alignments for each domain: == domain 1 score: 6.9 bits; conditional E-value: 0.14 EEEEEESS.SS........EEEEEEETTSS CS WD40 3 clrtltGH.ss........vtslafspdga 23 ++r+ +H + +ts+++sp+++ tr|F6SNN1|F6SNN1_CIOIN 55 PVRSVVTHhEHlkkysqdgITSISWSPSSS 84 5666555544455577788********997 PP == domain 2 score: 26.2 bits; conditional E-value: 1.1e-07 EEEESS.SSEEEEEEETTSSE.EEEEETTSEEEEEE CS WD40 5 rtltGH.ssvtslafspdgaw.lasGsdDgtvriWd 38 +tl+GH s+v+s+af p las sdD+t+riWd tr|F6SNN1|F6SNN1_CIOIN 117 TTLEGHkSGVNSVAFEPLEGNkLASVSDDNTCRIWD 152 4599**777****7555555568888*********9 PP >> tr|F6SHP7|F6SHP7_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.6 0.1 5.6e-05 0.0048 8 34 .. 19 46 .. 11 47 .. 0.88 2 ! 11.1 0.1 0.0064 0.54 3 35 .. 55 90 .. 53 91 .. 0.71 3 ? 1.7 0.0 6.2 5.3e+02 12 32 .. 152 174 .. 140 180 .. 0.68 Alignments for each domain: == domain 1 score: 17.6 bits; conditional E-value: 5.6e-05 ESS.SSEEEEEEETTSSEEEEEETTSEE CS WD40 8 tGH.ssvtslafspdgawlasGsdDgtv 34 +H +++ ++++s dg+ las+++D+ v tr|F6SHP7|F6SHP7_CIOIN 19 PTHdGDILCIDYSTDGKILASAGRDRCV 46 589888*******************987 PP == domain 2 score: 11.1 bits; conditional E-value: 0.0064 EEEEEESS.SSEEEEEEETTSSE..EEEEETTSEEE CS WD40 3 clrtltGH.ssvtslafspdgaw..lasGsdDgtvr 35 +++t++ H vt+ +f ++ + l++++ D++++ tr|F6SHP7|F6SHP7_CIOIN 55 PTHTISDHsAAVTAAKFAHHENEliLVTCGSDKSIY 90 7899****555**999666666644456544**996 PP == domain 3 score: 1.7 bits; conditional E-value: 6.2 S..EEEEEEETTSSEEEEEETTS CS WD40 12 s..vtslafspdgawlasGsdDg 32 + +a++ +++a++s D+ tr|F6SHP7|F6SHP7_CIOIN 152 TatILRVAVDNQRTMVAAASSDK 174 24588889999999998776565 PP >> tr|H2XS95|H2XS95_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.5 0.0 0.39 33 21 38 .] 94 110 .. 84 110 .. 0.86 2 ? 8.0 0.0 0.061 5.2 13 38 .] 125 150 .. 115 150 .. 0.85 3 ? 4.2 0.1 0.97 82 10 38 .] 171 202 .. 164 202 .. 0.74 4 ? 10.5 0.1 0.01 0.85 5 36 .. 256 288 .. 251 290 .. 0.88 Alignments for each domain: == domain 1 score: 5.5 bits; conditional E-value: 0.39 TSSEEEEEETTSEEEEEE CS WD40 21 dgawlasGsdDgtvriWd 38 d++++++ s +g +r+W+ tr|H2XS95|H2XS95_CIOIN 94 DSNFITCTS-NGDLRLWS 110 789986557.*******5 PP == domain 2 score: 8.0 bits; conditional E-value: 0.061 EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriWd 38 v +++ +++ + +++G++ + v++Wd tr|H2XS95|H2XS95_CIOIN 125 VLCMDLNSELQRVVTGGKENLVKLWD 150 8899888888889************9 PP == domain 3 score: 4.2 bits; conditional E-value: 0.97 S.SS..EEEEEEETTSSEEEE.EETTSEEEEEE CS WD40 10 H.ss..vtslafspdgawlas.GsdDgtvriWd 38 H + vt+l+f p+++ ++s + +++r++d tr|H2XS95|H2XS95_CIOIN 171 HrVPvwVTGLKFIPNSNKILSiTG-THNIRVFD 202 5434449***********873235.78888776 PP == domain 4 score: 10.5 bits; conditional E-value: 0.01 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvri 36 r ++G +s++ ++ +p+ ++++s+s D+++r+ tr|H2XS95|H2XS95_CIOIN 256 RCYKGFaGSIREIRCHPSLPYFFSCSLDRHLRV 288 557888778999********************8 PP >> tr|F6U8H5|F6U8H5_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.1 0.1 9.6 8.2e+02 12 30 .. 15 39 .. 7 47 .. 0.68 2 ? 2.5 0.0 3.3 2.8e+02 14 38 .] 66 90 .. 54 90 .. 0.83 3 ? 5.4 0.0 0.41 35 10 37 .. 103 131 .. 93 132 .. 0.83 4 ? 6.1 0.0 0.25 21 22 38 .] 294 310 .. 280 310 .. 0.77 5 ? 1.3 0.0 7.8 6.6e+02 12 38 .] 332 358 .. 324 358 .. 0.86 6 ? 1.7 0.0 6.1 5.1e+02 14 29 .. 387 402 .. 378 409 .. 0.84 7 ? 2.1 0.0 4.5 3.8e+02 19 38 .] 543 562 .. 519 562 .. 0.83 Alignments for each domain: == domain 1 score: 1.1 bits; conditional E-value: 9.6 S.EEEEEEETTSSEEEEE.E....T CS WD40 12 s.vtslafspdgawlasG.s....d 30 s v +la++ +a la + s d tr|F6U8H5|F6U8H5_CIOIN 15 SvVKCLAWHEQHAVLAVCtSlvedD 39 3479*********999773344323 PP == domain 2 score: 2.5 bits; conditional E-value: 3.3 EEEEEETTSSEEEEE.ETTSEEEEEE CS WD40 14 tslafspdgawlasG.sdDgtvriWd 38 t a++p ++la G +g v +W+ tr|F6U8H5|F6U8H5_CIOIN 66 TTAAWHPTRKLLAVGwE-NGEVLVWN 90 7779********97666.*******8 PP == domain 3 score: 5.4 bits; conditional E-value: 0.41 S.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 10 H.ssvtslafspdgawlasGsdDgtvriW 37 H + + + +s++g+ la+G++ g +W tr|F6U8H5|F6U8H5_CIOIN 103 HmKALSTITWSSNGTRLATGDKEGVFAVW 131 767778899***********999999999 PP == domain 4 score: 6.1 bits; conditional E-value: 0.25 SSEEEEE.ETTSEEEEEE CS WD40 22 gawlasG.sdDgtvriWd 38 g++la + s D+++r+Wd tr|F6U8H5|F6U8H5_CIOIN 294 GHLLAVAtS-DQSLRLWD 310 445665526.*******9 PP == domain 5 score: 1.3 bits; conditional E-value: 7.8 SEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 12 svtslafspdgawlasGsdDgtvriWd 38 s++ +++ p + l++G+ g v +W+ tr|F6U8H5|F6U8H5_CIOIN 332 SINNVSYFPGKGVLSAGTSEGRVAMWN 358 5999999999999*99*66*******8 PP == domain 6 score: 1.7 bits; conditional E-value: 6.1 EEEEEETTSSEEEEEE CS WD40 14 tslafspdgawlasGs 29 +sl+++p+++ la G+ tr|F6U8H5|F6U8H5_CIOIN 387 NSLKWCPNHPVLAVGG 402 89**********9996 PP == domain 7 score: 2.1 bits; conditional E-value: 4.5 ETTSSEEEEEETTSEEEEEE CS WD40 19 spdgawlasGsdDgtvriWd 38 s +g++++ G+ g ++i+d tr|F6U8H5|F6U8H5_CIOIN 543 SVNGNFIVVGTSTGCIKIYD 562 669*******66******98 PP >> tr|F7AXC6|F7AXC6_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.6 0.0 1.6 1.3e+02 13 29 .. 32 48 .. 21 55 .. 0.79 2 ! 21.9 0.0 2.6e-06 0.00022 1 38 [] 105 150 .. 105 150 .. 0.93 Alignments for each domain: == domain 1 score: 3.6 bits; conditional E-value: 1.6 EEEEEEETTSSEEEEEE CS WD40 13 vtslafspdgawlasGs 29 + +++spdg++ +s+s tr|F7AXC6|F7AXC6_CIOIN 32 IEFIRWSPDGKYYISAS 48 66688******966665 PP == domain 2 score: 21.9 bits; conditional E-value: 2.6e-06 TEEEEEEESS.SSEEEEE.......EETTSSEEEEEETTSEEEEEE CS WD40 1 gqclrtltGH.ssvtsla.......fspdgawlasGsdDgtvriWd 38 g++l ++++H + v +++ +g+wl+++s D v++Wd tr|F7AXC6|F7AXC6_CIOIN 105 GKKLLSYKAHeNRVKCVSpmvtpedIILNGTWLVTASSDECVKVWD 150 57899*****999************999******9988*******9 PP >> tr|H2Y1I4|H2Y1I4_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.1 0.0 2.2 1.9e+02 24 38 .] 83 97 .. 66 97 .. 0.81 2 ! 14.0 0.0 0.00079 0.067 8 38 .] 108 145 .. 100 145 .. 0.65 3 ? 2.7 0.1 3 2.5e+02 18 38 .] 176 196 .. 161 196 .. 0.75 4 ? 3.7 0.1 1.4 1.2e+02 9 38 .] 257 288 .. 248 288 .. 0.72 5 ? 4.9 0.0 0.6 51 10 35 .. 321 346 .. 312 347 .. 0.71 Alignments for each domain: == domain 1 score: 3.1 bits; conditional E-value: 2.2 EEEEEETTSEEEEEE CS WD40 24 wlasGsdDgtvriWd 38 la+G+ +g++ +Wd tr|H2Y1I4|H2Y1I4_CIOIN 83 NLATGDFKGKLSVWD 97 4899*88*******9 PP == domain 2 score: 14.0 bits; conditional E-value: 0.00079 ESSSS.EEEEE......EETTSSEEEEEETTSEEEEEE CS WD40 8 tGHss.vtsla......fspdgawlasGsdDgtvriWd 38 ++Hs +++++ + l++Gs+Dg v++Wd tr|H2Y1I4|H2Y1I4_CIOIN 108 DAHSEiINAIDgvgglgIGEGAPELVTGSRDGAVKVWD 145 47744457774444444333333389***********9 PP == domain 3 score: 2.7 bits; conditional E-value: 3 EETTSSEEEEEETTSEEEEEE CS WD40 18 fspdgawlasGsdDgtvriWd 38 ++++ + +++G d+g v+++d tr|H2Y1I4|H2Y1I4_CIOIN 176 YNSEERCVCAGYDNGDVKMFD 196 5555666889999*****998 PP == domain 4 score: 3.7 bits; conditional E-value: 1.4 SSSS....EEEEEEETTSSEEE.EEETTSEEEEEE CS WD40 9 GHss....vtslafspdgawla.sGsdDgtvriWd 38 +H+s v++l +++ ++++ +G+ g++ +W+ tr|H2Y1I4|H2Y1I4_CIOIN 257 AHKStvwlVRHL--PQNRDLFMtTGG-SGSLSLWK 288 674446666777..777777653889.*******6 PP == domain 5 score: 4.9 bits; conditional E-value: 0.6 SSSEEEEEEETTSSEEE.EEETTSEEE CS WD40 10 Hssvtslafspdgawla.sGsdDgtvr 35 + +v++l++spd+ l+ + s D+ +r tr|H2Y1I4|H2Y1I4_CIOIN 321 Q-PVCGLDWSPDKLGLCvTVSFDQALR 346 4.7*********988752446677776 PP >> tr|H2Y1T2|H2Y1T2_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.3 0.1 5.1e-08 4.3e-06 3 38 .] 31 65 .. 29 65 .. 0.81 Alignments for each domain: == domain 1 score: 27.3 bits; conditional E-value: 5.1e-08 EEEEEESSSS.EEEEEEETTSSE....EEEEETTSEEEEEE CS WD40 3 clrtltGHss.vtslafspdgaw....lasGsdDgtvriWd 38 + rt++GH+ v++l l+sGs+Dg+++iW+ tr|H2Y1T2|H2Y1T2_CIOIN 31 LKRTYRGHKYlVNCL------MTledtLLSGSYDGSIKIWN 65 679*****8899***......333444789**********8 PP >> tr|F6X056|F6X056_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.8 0.0 0.62 52 15 36 .. 2104 2126 .. 2089 2127 .. 0.82 2 ? 9.9 0.4 0.016 1.3 9 37 .. 2140 2173 .. 2133 2173 .. 0.70 3 ? 5.3 0.0 0.45 38 6 29 .. 2198 2222 .. 2194 2225 .. 0.87 4 ? 9.3 0.1 0.025 2.1 13 38 .] 2292 2317 .. 2280 2317 .. 0.87 Alignments for each domain: == domain 1 score: 4.8 bits; conditional E-value: 0.62 EEEEETTSSEEEEEE.TTSEEEE CS WD40 15 slafspdgawlasGs.dDgtvri 36 ++a+ d+++l+s++ +D++ r+ tr|F6X056|F6X056_CIOIN 2104 CFAVTADNKFLLSCGyWDRSFRV 2126 888999****9977549***997 PP == domain 2 score: 9.9 bits; conditional E-value: 0.016 SSSS.EEEEEEETTSSE......EEEEETTSEEEEE CS WD40 9 GHss.vtslafspdgaw......lasGsdDgtvriW 37 GH + vt+++ ++ ++ +++Gs+D t+++W tr|F6X056|F6X056_CIOIN 2140 GHWDvVTCIS--RSETYiggdcyFVTGSRDATLMLW 2173 993348***5..55555444444789********** PP == domain 3 score: 5.3 bits; conditional E-value: 0.45 EEESS.SSEEEEEEETTSSEEEEEE CS WD40 6 tltGH.ssvtslafspdgawlasGs 29 tltGH + +t+ a++ + ++asGs tr|F6X056|F6X056_CIOIN 2198 TLTGHdTEITCAAVCAELGLIASGS 2222 89***777****9999999999998 PP == domain 4 score: 9.3 bits; conditional E-value: 0.025 EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriWd 38 + ++ s+++++l++G+d+g v +W+ tr|F6X056|F6X056_CIOIN 2292 IKGMIGSSNSQYLVTGGDKGVVQVWS 2317 5666789******************5 PP >> tr|F7A027|F7A027_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 GN=LOC100185043 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.7 0.9 0.32 27 12 28 .. 134 150 .. 117 170 .. 0.85 2 ? 3.2 0.0 2.1 1.8e+02 3 38 .] 181 217 .. 179 217 .. 0.79 3 ? 7.8 0.0 0.069 5.9 10 37 .. 230 264 .. 224 265 .. 0.77 4 ? 10.5 0.1 0.01 0.88 6 37 .. 345 378 .. 341 379 .. 0.85 5 ? 2.1 0.1 4.5 3.8e+02 10 38 .] 394 424 .. 384 424 .. 0.72 6 ? 3.2 0.0 2 1.7e+02 12 36 .. 440 464 .. 431 464 .. 0.85 Alignments for each domain: == domain 1 score: 5.7 bits; conditional E-value: 0.32 SEEEEEEETTSSEEEEE CS WD40 12 svtslafspdgawlasG 28 vt++++s +ga +a G tr|F7A027|F7A027_CIOIN 134 EVTCISWSGSGASIAVG 150 49**********99988 PP == domain 2 score: 3.2 bits; conditional E-value: 2.1 EEEEEESSSSEEEEEEETTSSE.EEEEETTSEEEEEE CS WD40 3 clrtltGHssvtslafspdgaw.lasGsdDgtvriWd 38 c ++l+ ssv ++af+p a +a G g v +W+ tr|F7A027|F7A027_CIOIN 181 CDHKLEVESSVQAVAFHPTLAQyIAVGLFSGVVLVWN 217 666666667899**99999999888895599999997 PP == domain 3 score: 7.8 bits; conditional E-value: 0.069 S.SSEEEEEEETTSSE......EEEEETTSEEEEE CS WD40 10 H.ssvtslafspdgaw......lasGsdDgtvriW 37 H ++vtsl + +++ l+sGs Dg++ W tr|F7A027|F7A027_CIOIN 230 HeDPVTSLLWFEHQNSnhrylrLVSGSTDGKLISW 264 8778****7444444467778889*******9988 PP == domain 4 score: 10.5 bits; conditional E-value: 0.01 EEESS.SSEEEEEEETTSSEE.EEEETTSEEEEE CS WD40 6 tltGH.ssvtslafspdgawl.asGsdDgtvriW 37 +++ H ++v+s+++s+ ++ l +++ +D+ +ri+ tr|F7A027|F7A027_CIOIN 345 VYDNHvGPVYSIQWSKFHRNLfITCAMDQLCRIY 378 6889*999****999999997359988******8 PP == domain 5 score: 2.1 bits; conditional E-value: 4.5 S..SSEEEEEEETTSSEEE.EEETTSEEEEEE CS WD40 10 H..ssvtslafspdgawla.sGsdDgtvriWd 38 ++++s ++s + +a s + + +Wd tr|F7A027|F7A027_CIOIN 394 SvsNHIYSACWSTTRPCMAyVTS-GNDIEVWD 424 33344999999999999866567.88888887 PP == domain 6 score: 3.2 bits; conditional E-value: 2 SEEEEEEETTSSEEEEEETTSEEEE CS WD40 12 svtslafspdgawlasGsdDgtvri 36 +vts++ +p+ + +a+G+ +g v i tr|F7A027|F7A027_CIOIN 440 PVTSMRMNPSRPSIATGCSNGVVQI 464 49***************77998865 PP >> tr|F6W7W0|F6W7W0_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.8 0.0 0.3 26 22 37 .. 31 45 .. 4 46 .. 0.71 2 ! 15.0 0.0 0.00038 0.033 9 38 .] 133 163 .. 117 163 .. 0.87 3 ? 4.2 0.0 0.98 83 13 35 .. 178 199 .. 166 200 .. 0.81 Alignments for each domain: == domain 1 score: 5.8 bits; conditional E-value: 0.3 SSEEEEEETTSEEEEE CS WD40 22 gawlasGsdDgtvriW 37 ++++++Gs D + iW tr|F6W7W0|F6W7W0_CIOIN 31 NTLISCGS-DERIIIW 45 23366777.******* PP == domain 2 score: 15.0 bits; conditional E-value: 0.00038 SSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 9 GHss.vtslafspdgawlasGsdDgtvriWd 38 H++ vts++ s+ +++a+ s+D+ ++iW+ tr|F6W7W0|F6W7W0_CIOIN 133 CHKDvVTSVSESHLLQLFATTSKDKFIKIWN 163 698856***988888889************8 PP == domain 3 score: 4.2 bits; conditional E-value: 0.98 EEEEEEETTSSEEEEEETTSEEE CS WD40 13 vtslafspdgawlasGsdDgtvr 35 vts++f ++las + ++ vr tr|F6W7W0|F6W7W0_CIOIN 178 VTSVCFANGRDLLASLH-NHIVR 199 7***********98546.99888 PP >> tr|F6Z0E0|F6Z0E0_CIOIN DDB1- and CUL4-associated factor 7 OS=Ciona intestinalis OX=7719 GN=LOC100186524 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.4 0.0 0.011 0.93 6 38 .] 170 206 .. 161 206 .. 0.78 2 ! 17.2 1.4 7.8e-05 0.0066 3 38 .] 259 296 .. 257 296 .. 0.86 Alignments for each domain: == domain 1 score: 10.4 bits; conditional E-value: 0.011 EEESS.SSEEEEEEETTSSE...EEEEETTSEEEEEE CS WD40 6 tltGH.ssvtslafspdgaw...lasGsdDgtvriWd 38 l +H + v+++afs+ g +as + Dg+vr++d tr|F6Z0E0|F6Z0E0_CIOIN 170 QLIAHdKEVYDIAFSRAGGGrdmFASVGADGSVRMFD 206 36789777****88877777997666566*****998 PP == domain 2 score: 17.2 bits; conditional E-value: 7.8e-05 EEEEEESS.SSEEEEEEETTSSEEE.EEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawla.sGsdDgtvriWd 38 ++ +l H +v+++a+ p+++ ++ +++dD+ iWd tr|F6Z0E0|F6Z0E0_CIOIN 259 PVAKLNNHrACVNGIAWAPHSSCHVcTAGDDHQALIWD 296 6778889*888************8636689*******9 PP >> tr|F7A8L3|F7A8L3_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.3 0.0 4.1 3.4e+02 18 36 .. 2422 2441 .. 2392 2441 .. 0.67 2 ! 11.3 0.5 0.0058 0.49 7 38 .] 2452 2484 .. 2446 2484 .. 0.82 3 ! 16.0 0.2 0.00019 0.016 2 36 .. 2498 2533 .. 2497 2534 .. 0.91 Alignments for each domain: == domain 1 score: 2.3 bits; conditional E-value: 4.1 EETTSSEEEEEE.TTSEEEE CS WD40 18 fspdgawlasGs.dDgtvri 36 + +d ++l+ G+ +D+++ri tr|F7A8L3|F7A8L3_CIOIN 2422 VTHDAKYLFVGGyWDNSIRI 2441 45667888777549*****8 PP == domain 2 score: 11.3 bits; conditional E-value: 0.0058 EESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 7 ltGH.ssvtslafspdgawlasGsdDgtvriWd 38 l H + vt+la ++ g+ ++sGs+D t iW+ tr|F7A8L3|F7A8L3_CIOIN 2452 LVRHlDVVTCLALDHGGTSMISGSYDTTSIIWK 2484 55574448************************5 PP == domain 3 score: 16.0 bits; conditional E-value: 0.00019 EEEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEE CS WD40 2 qclrtltGHss.vtslafspdgawlasGsdDgtvri 36 q+l++l GH + vt++ ++++ + +s+s+Dgt+ i tr|F7A8L3|F7A8L3_CIOIN 2498 QPLHILYGHEDvVTCVVVNSELDVALSSSKDGTCVI 2533 89*******7757***********99*******987 PP >> tr|H2XU88|H2XU88_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.0 0.0 0.27 23 22 37 .. 228 243 .. 202 244 .. 0.78 2 ? 5.7 0.0 0.32 27 12 37 .. 2434 2468 .. 2423 2469 .. 0.73 3 ! 17.6 0.0 5.8e-05 0.0049 2 38 .] 2611 2648 .. 2610 2648 .. 0.93 Alignments for each domain: == domain 1 score: 6.0 bits; conditional E-value: 0.27 SSEEEEEETTSEEEEE CS WD40 22 gawlasGsdDgtvriW 37 ++ l+s+s+D+ +riW tr|H2XU88|H2XU88_CIOIN 228 SNVLISSSRDQICRIW 243 3448999********* PP == domain 2 score: 5.7 bits; conditional E-value: 0.32 S.........EEEEEEETTSSEEEEEETTSEEEEE CS WD40 12 s.........vtslafspdgawlasGsdDgtvriW 37 + v+ l +p ++ ++Gs Dg++ +W tr|H2XU88|H2XU88_CIOIN 2434 NvllkraratVRRLESHPTLPYYLTGSADGSLCMW 2468 2555555556888999999999779********** PP == domain 3 score: 17.6 bits; conditional E-value: 5.8e-05 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++l ++ +H s + +l+++p+ + a+Gs g v+iWd tr|H2XU88|H2XU88_CIOIN 2611 EPLAKFIAHdSAIKCLSVDPHERIYATGSTSGDVKIWD 2648 68899****777*************************9 PP >> tr|F7B0J8|F7B0J8_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.7 0.0 0.076 6.4 6 37 .. 338 370 .. 333 371 .. 0.78 2 ! 13.7 1.3 0.00098 0.083 4 38 .] 492 528 .. 489 528 .. 0.73 3 ? 6.7 0.1 0.15 13 11 38 .] 543 571 .. 533 571 .. 0.80 Alignments for each domain: == domain 1 score: 7.7 bits; conditional E-value: 0.076 EEESSSSEEEEEEETTSSEEE.EEETTSEEEEE CS WD40 6 tltGHssvtslafspdgawla.sGsdDgtvriW 37 ++++ s+v +l+ +p ++l+ G +Dg+v ++ tr|F7B0J8|F7B0J8_CIOIN 338 IYSTESGVMCLDIHPIYQYLVcVGFYDGSVGVF 370 5666678************9834678***9776 PP == domain 2 score: 13.7 bits; conditional E-value: 0.00098 EEEEESSSS..EEEEEEETTSSEE.EEEETTSEEEEEE CS WD40 4 lrtltGHss..vtslafspdgawl.asGsdDgtvriWd 38 l t+++H + v +++++p ++ + +s+s D tv+iWd tr|F7B0J8|F7B0J8_CIOIN 492 LDTIDAH-HmaVDAVRWNPFHPDIfISCSADWTVKIWD 528 6677888.4449999766666665269999*******9 PP == domain 3 score: 6.7 bits; conditional E-value: 0.15 SSEEEEEEETTSSEEEEE.ETTSEEEEEE CS WD40 11 ssvtslafspdgawlasG.sdDgtvriWd 38 s v ++a+ p ++ ++++ + Dg+v+++d tr|F7B0J8|F7B0J8_CIOIN 543 SAVGDVAWAPFSSTVFAAvTADGKVHVFD 571 34999*********9877667******98 PP >> tr|F6RTW0|F6RTW0_CIOIN WD repeat domain phosphoinositide-interacting protein 3 OS=Ciona intestinalis OX=7719 GN=LOC1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.3 0.0 8.3 7e+02 28 38 .] 62 78 .. 46 78 .. 0.67 2 ! 12.3 0.1 0.0027 0.23 8 34 .. 174 201 .. 169 206 .. 0.78 3 ! 14.4 0.1 0.00057 0.048 6 37 .. 215 249 .. 210 250 .. 0.77 Alignments for each domain: == domain 1 score: 1.3 bits; conditional E-value: 8.3 EET......TSEEEEEE CS WD40 28 Gsd......DgtvriWd 38 Gs +++v+iWd tr|F6RTW0|F6RTW0_CIOIN 62 GSGtselypKNKVMIWD 78 332234777899****9 PP == domain 2 score: 12.3 bits; conditional E-value: 0.0027 ESS.SSEEEEEEETTSSEEEEEETTSEE CS WD40 8 tGH.ssvtslafspdgawlasGsdDgtv 34 +H +++++la + dg+ la++s +gt+ tr|F6RTW0|F6RTW0_CIOIN 174 HAHdGPISCLALNVDGSRLATASHKGTL 201 489777**************98755554 PP == domain 3 score: 14.4 bits; conditional E-value: 0.00057 EEE.SS.SS.EEEEEEETTSSEEEEEETTSEEEEE CS WD40 6 tlt.GH.ss.vtslafspdgawlasGsdDgtvriW 37 +l+ G + ++++ f+ d+++l+++sd gtv+i+ tr|F6RTW0|F6RTW0_CIOIN 215 ELRrGSgNAkIYCINFNVDSTLLCASSDHGTVHIF 249 5533443335**************99*9****997 PP >> tr|F6YG27|F6YG27_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.1 0.1 4.4 3.7e+02 12 26 .. 142 158 .. 124 172 .. 0.70 2 ? 8.3 0.0 0.051 4.3 7 34 .. 182 210 .. 176 211 .. 0.87 3 ? 7.5 0.0 0.088 7.4 12 30 .. 234 252 .. 219 260 .. 0.81 Alignments for each domain: == domain 1 score: 2.1 bits; conditional E-value: 4.4 S..EEEEEEETTSSEEE CS WD40 12 s..vtslafspdgawla 26 + +++l+ s d+a+la tr|F6YG27|F6YG27_CIOIN 142 PhgICALSGSNDNALLA 158 24488888888888875 PP == domain 2 score: 8.3 bits; conditional E-value: 0.051 EESS.SSEEEEEEETTSSEEEEEETTSEE CS WD40 7 ltGH.ssvtslafspdgawlasGsdDgtv 34 + +H ++ +l+f+++ + la++sd+gtv tr|F6YG27|F6YG27_CIOIN 182 IHAHnNPLAALSFNRSATQLATASDKGTV 210 56898889****************99998 PP == domain 3 score: 7.5 bits; conditional E-value: 0.088 SEEEEEEETTSSEEEEEET CS WD40 12 svtslafspdgawlasGsd 30 s++slafs d+ +la++s tr|F6YG27|F6YG27_CIOIN 234 SICSLAFSADSLFLAASSN 252 499***********99884 PP >> tr|H2XTN0|H2XTN0_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.2 0.0 4.1 3.5e+02 14 36 .. 71 93 .. 56 95 .. 0.79 2 ? 6.2 0.0 0.23 20 10 38 .] 197 225 .. 188 225 .. 0.68 3 ? 8.0 0.0 0.062 5.2 13 38 .] 241 268 .. 230 268 .. 0.85 Alignments for each domain: == domain 1 score: 2.2 bits; conditional E-value: 4.1 EEEEEETTSSEEEEEETTSEEEE CS WD40 14 tslafspdgawlasGsdDgtvri 36 ++ f++d + +++s D+ + + tr|H2XTN0|H2XTN0_CIOIN 71 EGCEFHKDAQIALTASQDCRLNL 93 4566*******99*****99876 PP == domain 2 score: 6.2 bits; conditional E-value: 0.23 SSSEEEEEEETTSSEEE.EEETTSEEEEEE CS WD40 10 Hssvtslafspdgawla.sGsdDgtvriWd 38 +sv++++f + g ++ G+ g v iWd tr|H2XTN0|H2XTN0_CIOIN 197 NGSVSDIDFMSGGEKMLsIGD-EGIVCIWD 225 445999976666666551455.*******9 PP == domain 3 score: 8.0 bits; conditional E-value: 0.062 E..EEEEEETTSSEEEEEETTSEEEEEE CS WD40 13 v..tslafspdgawlasGsdDgtvriWd 38 v t++a s++++++a+Gs+ g v ++d tr|H2XTN0|H2XTN0_CIOIN 241 VngTAIAASQNSSYFACGSYSGIVNLYD 268 54478999****************9998 PP >> tr|F6WLW9|F6WLW9_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.5 0.1 0.021 1.8 22 38 .] 53 69 .. 50 69 .. 0.83 2 ? 1.7 0.1 5.9 5e+02 13 38 .] 84 110 .. 77 110 .. 0.85 3 ? 9.2 0.0 0.027 2.3 3 38 .] 294 329 .. 292 329 .. 0.83 Alignments for each domain: == domain 1 score: 9.5 bits; conditional E-value: 0.021 SSEEE.EEETTSEEEEEE CS WD40 22 gawla.sGsdDgtvriWd 38 g++la +G+ D+ vr+Wd tr|F6WLW9|F6WLW9_CIOIN 53 GNYLAtTGH-DNVVRVWD 69 789984566.*******9 PP == domain 2 score: 1.7 bits; conditional E-value: 5.9 EEEEEEETTSSEEE.EEETTSEEEEEE CS WD40 13 vtslafspdgawla.sGsdDgtvriWd 38 t++ +++dg+ l+ + + t+ +Wd tr|F6WLW9|F6WLW9_CIOIN 84 CTGMEWDKDGDVLCfICEKSSTIFMWD 110 58899*******9557999*******9 PP == domain 3 score: 9.2 bits; conditional E-value: 0.027 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 l + H + +s+a sp ++ as++ D ++ri d tr|F6WLW9|F6WLW9_CIOIN 294 ELFQVRNHhDYLSSIAISPVLNYAASCG-DTNIRIHD 329 566667775669****************.*****976 PP >> tr|F7BD94|F7BD94_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 11.0 0.1 0.0071 0.6 9 37 .. 222 252 .. 214 253 .. 0.83 2 ? 10.1 0.1 0.014 1.1 2 37 .. 263 310 .. 262 311 .. 0.89 Alignments for each domain: == domain 1 score: 11.0 bits; conditional E-value: 0.0071 SSSS..EEEEEEETTSSEEEEEETTSEEEEE CS WD40 9 GHss..vtslafspdgawlasGsdDgtvriW 37 G s+ ++++ sp g+ la++s Dg v++W tr|F7BD94|F7BD94_CIOIN 222 GESDadISDCELSPIGNVLAAASTDGFVKFW 252 55334599999*********9999******* PP == domain 2 score: 10.1 bits; conditional E-value: 0.014 EEEEEEESS..SSEEEEEEETTSSE.........EEEEE.TTSEEEEE CS WD40 2 qclrtltGH..ssvtslafspdgaw.........lasGs.dDgtvriW 37 +cl+ ++ H ++v++++f+++++ l++G+ +++ ++iW tr|F7BD94|F7BD94_CIOIN 263 TCLHQWKPHdgKPVSCVKFCDNKKQpensifwrfLLTGCeRNNELKIW 310 699******8777*****99999999999999998899856******* PP >> tr|F6YIU2|F6YIU2_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.0 0.1 0.00078 0.066 3 38 .] 113 150 .. 111 150 .. 0.79 2 ! 15.6 0.5 0.00024 0.021 3 38 .] 254 291 .. 252 291 .. 0.89 3 ? 3.1 0.1 2.2 1.8e+02 15 36 .. 312 334 .. 300 336 .. 0.71 Alignments for each domain: == domain 1 score: 14.0 bits; conditional E-value: 0.00078 EEEEEESS.SSEEEEEEETTSSEE.EEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawl.asGsdDgtvriWd 38 c+ + + H ++v+sl+f+ ++ l asG D ++iWd tr|F6YIU2|F6YIU2_CIOIN 113 CILSNSKHtGPVRSLDFNNFQKNLfASGANDSEIYIWD 150 67777889888*****76666665278889*******9 PP == domain 2 score: 15.6 bits; conditional E-value: 0.00024 EEEEEESS.SSEEEEE.EETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtsla.fspdgawlasGsdDgtvriWd 38 ++++l+ H ++v s++ +d+++l+++++D++++ W+ tr|F6YIU2|F6YIU2_CIOIN 254 PMKVLEKHsKGVLSVSwCKQDSDLLLTCGKDNHIYCWN 291 7899999*999****88888888899***********8 PP == domain 3 score: 3.1 bits; conditional E-value: 2.2 EEEEETTSSE.EEEEETTSEEEE CS WD40 15 slafspdgaw.lasGsdDgtvri 36 +++++p ++ l++Gs Dg + i tr|F6YIU2|F6YIU2_CIOIN 312 DVQWCPRNPNiLSTGSFDGCISI 334 45566666663569999***987 PP >> tr|F6ZEC1|F6ZEC1_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.9 0.1 5e-06 0.00042 3 35 .. 166 198 .] 164 198 .] 0.92 Alignments for each domain: == domain 1 score: 20.9 bits; conditional E-value: 5e-06 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvr 35 clr+l GH ssv+++ f++ g+ +++GsdD ++ tr|F6ZEC1|F6ZEC1_CIOIN 166 CLRVL-GHlSSVYCVLFDRTGSKIFTGSDDSLIK 198 89999.9*********************888775 PP >> tr|F7B4Q5|F7B4Q5_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.8 0.0 1.4 1.1e+02 13 38 .] 246 273 .. 233 273 .. 0.74 2 ! 11.5 0.1 0.0049 0.42 9 35 .. 291 319 .. 284 322 .. 0.84 3 ? 6.4 0.0 0.19 16 3 38 .] 424 461 .. 422 461 .. 0.67 Alignments for each domain: == domain 1 score: 3.8 bits; conditional E-value: 1.4 EEEEE..EETTSSEEEEEETTSEEEEEE CS WD40 13 vtsla..fspdgawlasGsdDgtvriWd 38 +++++ s++ +a+G++ g v iW+ tr|F7B4Q5|F7B4Q5_CIOIN 246 IYAIDiyPSHSDIIMAAGGREGDVGIWN 273 666666345555556899*********8 PP == domain 2 score: 11.5 bits; conditional E-value: 0.0049 SS.SSEEEEEEETTSSE.EEEEETTSEEE CS WD40 9 GH.ssvtslafspdgaw.lasGsdDgtvr 35 H s+v +l+f pd + l s+s+Dg r tr|F7B4Q5|F7B4Q5_CIOIN 291 PHsSPVKCLRFAPDAPHkLYSCSYDGMFR 319 59777************778******877 PP == domain 3 score: 6.4 bits; conditional E-value: 0.19 EEEEEESS.SSEEEEEEETTSSE.EEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgaw.lasGsdDgtvriWd 38 ++ tl GH + +s fsp l+++++D +r+++ tr|F7B4Q5|F7B4Q5_CIOIN 424 PVVTLHGHkKAANSAIFSPITGNkLVTCCYDDRLRVYN 461 566888997666555443333334778888******97 PP >> tr|F6ZN43|F6ZN43_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.1 0.1 2.2 1.9e+02 17 38 .] 53 74 .. 35 74 .. 0.76 2 ! 13.2 0.0 0.0014 0.12 9 38 .] 86 116 .. 79 116 .. 0.88 Alignments for each domain: == domain 1 score: 3.1 bits; conditional E-value: 2.2 EEETTSSEEEEEETTSEEEEEE CS WD40 17 afspdgawlasGsdDgtvriWd 38 + +p++a ++ G+ +g++ +W+ tr|F6ZN43|F6ZN43_CIOIN 53 CHNPHNAVVLLGHHNGSISMWS 74 44677777544*99*******5 PP == domain 2 score: 13.2 bits; conditional E-value: 0.0014 SS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 9 GH.ssvtslafspdgawlasGsdDgtvriWd 38 H + ++s+a+ + g++la+++ D++ +i+d tr|F6ZN43|F6ZN43_CIOIN 86 CHkTAIRSMAVEKRGNYLATAGQDRKMKIFD 116 79666************************98 PP >> tr|F6Q2Q3|F6Q2Q3_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.6 0.0 6.7 5.6e+02 13 38 .] 194 218 .. 184 218 .. 0.81 2 ? 3.7 0.1 1.4 1.2e+02 3 37 .. 374 408 .. 372 409 .. 0.68 3 ! 11.5 0.1 0.0047 0.4 9 38 .] 480 529 .. 473 529 .. 0.65 Alignments for each domain: == domain 1 score: 1.6 bits; conditional E-value: 6.7 EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriWd 38 v+++a ++ +++a++ ++r+W+ tr|F6Q2Q3|F6Q2Q3_CIOIN 194 VHGMAPDSKTRMVAAAF-STNIRLWS 218 77787777788898888.*******5 PP == domain 2 score: 3.7 bits; conditional E-value: 1.4 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 + +++t H + v+ + +++++++ +sd+++vr W tr|F6Q2Q3|F6Q2Q3_CIOIN 374 LFQKFTVHrGLVCKV-MLSEKHLVSVCSDNNHVRTW 408 566777784337777.44455557779*******99 PP == domain 3 score: 11.5 bits; conditional E-value: 0.0047 SS.SS.EEEEEEETTSSE..................EEEEETTSEEEEEE CS WD40 9 GH.ss.vtslafspdgaw..................lasGsdDgtvriWd 38 GH +ts++ sp + + l++G+++gt+ +Wd tr|F6Q2Q3|F6Q2Q3_CIOIN 480 GHrVAvITSIDGSPISCFclhecegssrmgsrprryLFTGHMNGTIQMWD 529 6754445777755555555455555555555555559************9 PP >> tr|F6U441|F6U441_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.4 0.0 0.21 17 16 38 .] 104 128 .. 80 128 .. 0.82 2 ? 4.6 0.0 0.71 60 22 36 .. 297 311 .. 284 312 .. 0.78 3 ? 6.6 0.0 0.17 15 7 35 .. 457 487 .. 451 490 .. 0.76 4 ? 2.3 0.1 4 3.4e+02 9 34 .. 619 645 .. 609 651 .. 0.63 5 ? 4.4 0.4 0.87 73 6 36 .. 663 693 .. 652 697 .. 0.74 Alignments for each domain: == domain 1 score: 6.4 bits; conditional E-value: 0.21 EEEETTSSEEEEEET..TSEEEEEE CS WD40 16 lafspdgawlasGsd..DgtvriWd 38 l+fs +g+++a+ s D ++ +Wd tr|F6U441|F6U441_CIOIN 104 LQFSFNGSFFAATSSipDFSIFVWD 128 55*******98666568*******9 PP == domain 2 score: 4.6 bits; conditional E-value: 0.71 SSEEEEEETTSEEEE CS WD40 22 gawlasGsdDgtvri 36 + l++G+dDgt+r+ tr|F6U441|F6U441_CIOIN 297 SEGLVAGGDDGTLRL 311 444788*******97 PP == domain 3 score: 6.6 bits; conditional E-value: 0.17 EESS.SSEEEEEEETTSSEEEEEE.TTSEEE CS WD40 7 ltGH.ssvtslafspdgawlasGs.dDgtvr 35 + H s+vt l+++ g++l+++s d +++ tr|F6U441|F6U441_CIOIN 457 TRIHhSPVTYLKYNAGGDFLLTASeDEPHIF 487 4445599**************9994466665 PP == domain 4 score: 2.3 bits; conditional E-value: 4 SSSSE..EEEEEETTSSEEEEEET.TSEE CS WD40 9 GHssv..tslafspdgawlasGsd.Dgtv 34 GH s+ sp+g+w+as Dg v tr|F6U441|F6U441_CIOIN 619 GH-QLsgGSVILSPHGKWVAS-FApDGDV 645 44.232247778******975.3336655 PP == domain 5 score: 4.4 bits; conditional E-value: 0.87 EEESSSSEEEEEEETTSSEEEE.E.ETTSEEEE CS WD40 6 tltGHssvtslafspdgawlas.G.sdDgtvri 36 ++ H++v l fspd + ++s G s D+ ++ tr|F6U441|F6U441_CIOIN 663 SYI-HGGVKTLTFSPDASHFISvGyS-DQACMC 693 443.66799999*******8752644.887765 PP >> tr|F6SWH7|F6SWH7_CIOIN Vacuolar protein sorting-associated protein 41 homolog OS=Ciona intestinalis OX=7719 GN=zf(ri # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.9 1.1 5.3e-06 0.00045 3 36 .. 65 99 .. 63 99 .. 0.92 Alignments for each domain: == domain 1 score: 20.9 bits; conditional E-value: 5.3e-06 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvri 36 + ++++ H +svt+++ + +g +as+sdDgtv+i tr|F6SWH7|F6SWH7_CIOIN 65 TSKHCKPHaTSVTGISLDGSGEHVASCSDDGTVKI 99 5688999*999***********************8 PP >> tr|H2Y2H8|H2Y2H8_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.3 0.1 1.9 1.6e+02 13 34 .. 121 140 .. 107 141 .. 0.78 2 ? 2.2 0.0 4.1 3.5e+02 18 36 .. 165 183 .. 147 185 .. 0.84 3 ! 11.6 0.1 0.0045 0.38 2 38 .] 190 241 .. 189 241 .. 0.76 Alignments for each domain: == domain 1 score: 3.3 bits; conditional E-value: 1.9 EEEEEEETTSSEEEEEETTSEE CS WD40 13 vtslafspdgawlasGsdDgtv 34 +++ f++d+ ++ G++D+++ tr|H2Y2H8|H2Y2H8_CIOIN 121 AHCMVFHKDHLYI--GGKDQHI 140 5799999999997..**9*998 PP == domain 2 score: 2.2 bits; conditional E-value: 4.1 EETTSSEEEEEETTSEEEE CS WD40 18 fspdgawlasGsdDgtvri 36 f + +++l++G+ +g++++ tr|H2Y2H8|H2Y2H8_CIOIN 165 FRKTSRYLCCGGFNGKIML 183 6678899****99**9997 PP == domain 3 score: 11.6 bits; conditional E-value: 0.0045 EEEEEEESS.SSEEEEEEETTSSEEEEEET................TSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsd................DgtvriWd 38 ++++tl+GH +s +++ + +g++l+++++ D+ v+++d tr|H2Y2H8|H2Y2H8_CIOIN 190 KLQHTLDGHtGSLSDF--DASGHLLITCGYsqrpgslineplnwslDRFVKVYD 241 689******7768866..********9975456666777777777777777776 PP >> tr|F6R815|F6R815_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.6 0.1 6.5 5.5e+02 14 37 .. 154 177 .. 146 178 .. 0.84 2 ! 13.6 0.0 0.001 0.089 16 38 .] 352 368 .. 337 368 .. 0.87 Alignments for each domain: == domain 1 score: 1.6 bits; conditional E-value: 6.5 EEEEEETTSSEEEEEETTSEEEEE CS WD40 14 tslafspdgawlasGsdDgtvriW 37 sl+++++ + ++s++ Dg + W tr|F6R815|F6R815_CIOIN 154 ESLSWHSNCQEFISAHNDGYLCTW 177 68889999999999*****99877 PP == domain 2 score: 13.6 bits; conditional E-value: 0.001 EEEETTSSEEEEEETTSEEEEEE CS WD40 16 lafspdgawlasGsdDgtvriWd 38 ++l++G++Dg+v++Wd tr|F6R815|F6R815_CIOIN 352 H------NLLMTGHEDGSVKLWD 368 3......7899***********9 PP >> tr|F6ZWA3|F6ZWA3_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.5 0.0 1.7 1.4e+02 15 38 .] 220 244 .. 205 244 .. 0.75 2 ? 1.8 0.3 5.4 4.6e+02 25 38 .] 279 292 .. 259 292 .. 0.73 3 ? 8.9 0.0 0.032 2.7 6 38 .] 358 391 .. 353 391 .. 0.76 4 ? 3.1 0.1 2.1 1.8e+02 13 29 .. 454 470 .. 441 475 .. 0.81 Alignments for each domain: == domain 1 score: 3.5 bits; conditional E-value: 1.7 EEEEETTSSEEEEE.ETTSEEEEEE CS WD40 15 slafspdgawlasG.sdDgtvriWd 38 sl ++p + ++ G +++g + +Wd tr|F6ZWA3|F6ZWA3_CIOIN 220 SLEYNPKDSHVLVGgCYNGQIAFWD 244 66766666666555379*******9 PP == domain 2 score: 1.8 bits; conditional E-value: 5.4 EEEEETTSEEEEEE CS WD40 25 lasGsdDgtvriWd 38 +s+s Dg v Wd tr|F6ZWA3|F6ZWA3_CIOIN 279 CFSSSTDGQVLWWD 292 446677*******9 PP == domain 3 score: 8.9 bits; conditional E-value: 0.032 EEESS.SSEEEEE..EETTSSEEEEEETTSEEEEEE CS WD40 6 tltGH.ssvtsla..fspdgawlasGsdDgtvriWd 38 + GH ++v+sl+ +++l + + D t riW+ tr|F6ZWA3|F6ZWA3_CIOIN 358 LYPGHyGPVYSLQrnPFFPKNFL-TVG-DWTARIWS 391 478**999****99744455666.678.*******5 PP == domain 4 score: 3.1 bits; conditional E-value: 2.1 EEEEEEETTSSEEEEEE CS WD40 13 vtslafspdgawlasGs 29 v+sl+ +++g+ +a+Gs tr|F6ZWA3|F6ZWA3_CIOIN 454 VHSLRIQDNGRIVACGS 470 99************998 PP >> tr|F6SFZ3|F6SFZ3_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.5 0.1 0.81 69 15 27 .. 30 42 .. 24 59 .. 0.86 2 ? 3.4 0.0 1.8 1.5e+02 12 29 .. 118 135 .. 107 141 .. 0.81 3 ! 10.7 0.1 0.0084 0.71 13 37 .. 206 228 .. 197 229 .. 0.83 Alignments for each domain: == domain 1 score: 4.5 bits; conditional E-value: 0.81 EEEEETTSSEEEE CS WD40 15 slafspdgawlas 27 sl++spdg+ +a+ tr|F6SFZ3|F6SFZ3_CIOIN 30 SLSWSPDGSIVAA 42 89********874 PP == domain 2 score: 3.4 bits; conditional E-value: 1.8 SEEEEEEETTSSEEEEEE CS WD40 12 svtslafspdgawlasGs 29 ++s++f+ +++l+ G+ tr|F6SFZ3|F6SFZ3_CIOIN 118 AICSVCFDEKSRLLIIGG 135 499***********9997 PP == domain 3 score: 10.7 bits; conditional E-value: 0.0084 EEEEEEETTSSEEEEEETTSEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriW 37 + s +spd + l+s++ +gt+ +W tr|F6SFZ3|F6SFZ3_CIOIN 206 ILS--VSPDCSKLVSCDTNGTIVLW 228 444..5**********99******* PP >> tr|H2XZ64|H2XZ64_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.4 0.2 0.86 73 13 27 .. 105 119 .. 96 158 .. 0.83 2 ? 10.3 0.0 0.012 1 8 37 .. 174 207 .. 167 208 .. 0.80 Alignments for each domain: == domain 1 score: 4.4 bits; conditional E-value: 0.86 EEEEEEETTSSEEEE CS WD40 13 vtslafspdgawlas 27 + ++fsp g+++as tr|H2XZ64|H2XZ64_CIOIN 105 IQEVSFSPCGRFIAS 119 66789*******987 PP == domain 2 score: 10.3 bits; conditional E-value: 0.012 E...SS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 8 t...GH.ssvtslafspdgawlasGsdDgtvriW 37 t GH s v s afsp g +++Gs++g + ++ tr|H2XZ64|H2XZ64_CIOIN 174 TycfGHrSLVLSTAFSPVGIQIVTGSKNGEIVFY 207 34449955599*****************999776 PP >> tr|F7A7B2|F7A7B2_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.6 0.1 0.019 1.6 10 36 .. 85 119 .. 77 119 .. 0.84 2 ? 1.7 0.0 6.1 5.2e+02 3 18 .. 133 149 .. 131 169 .. 0.78 Alignments for each domain: == domain 1 score: 9.6 bits; conditional E-value: 0.019 S.SSEEEEE.......EETTSSEEEEEETTSEEEE CS WD40 10 H.ssvtsla.......fspdgawlasGsdDgtvri 36 H + +t+++ +++ +++++G dD +v i tr|F7A7B2|F7A7B2_CIOIN 85 HsQQITCVKflgrvesSDSSTSYIVTGADDTKVII 119 7455**********999999999*****9999865 PP == domain 2 score: 1.7 bits; conditional E-value: 6.1 EEEEEESS.SSEEEEEE CS WD40 3 clrtltGH.ssvtslaf 18 l++l+ H s+v+sla+ tr|F7A7B2|F7A7B2_CIOIN 133 VLQILDDHsSNVRSLAV 149 5789999*666***974 PP >> tr|F6U4Y8|F6U4Y8_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.4 0.0 0.094 8 8 38 .] 52 87 .. 45 87 .. 0.78 2 ? 6.5 0.0 0.18 15 13 27 .. 110 123 .. 94 127 .. 0.79 Alignments for each domain: == domain 1 score: 7.4 bits; conditional E-value: 0.094 ESS.SS..EEEEEEETTSSEEEEE..ETTSEEEEEE CS WD40 8 tGH.ss..vtslafspdgawlasG..sdDgtvriWd 38 G +s t++a sp+ +++a + +d++tv i+d tr|F6U4Y8|F6U4Y8_CIOIN 52 PGSdKSqgMTAIALSPNRRYVAVAekGDKPTVTIYD 87 56654455799**********9988878****9998 PP == domain 2 score: 6.5 bits; conditional E-value: 0.18 EEEEEEETTSSEEEE CS WD40 13 vtslafspdgawlas 27 v slafspd+++l++ tr|F6U4Y8|F6U4Y8_CIOIN 110 V-SLAFSPDSKYLIA 123 5.9*********986 PP >> tr|H2XN44|H2XN44_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.5 0.1 0.00013 0.011 9 38 .] 21 49 .. 12 49 .. 0.83 Alignments for each domain: == domain 1 score: 16.5 bits; conditional E-value: 0.00013 SSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 9 GHss.vtslafspdgawlasGsdDgtvriWd 38 H++ vts+ ++++ ++++s D+++++W+ tr|H2XN44|H2XN44_CIOIN 21 VHNGkVTSV--LHHNDIIITSSLDRKIKLWK 49 68555****..888888899999*******6 PP >> tr|H2XJV1|H2XJV1_CIOIN WD repeat-containing protein 25 OS=Ciona intestinalis OX=7719 GN=LOC100180754 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.9 0.1 0.065 5.5 12 38 .] 17 43 .. 5 43 .. 0.80 2 ? 2.0 0.0 4.9 4.2e+02 13 38 .] 103 135 .. 90 135 .. 0.64 3 ? 2.8 0.0 2.8 2.3e+02 12 29 .. 200 216 .. 186 225 .. 0.75 Alignments for each domain: == domain 1 score: 7.9 bits; conditional E-value: 0.065 SEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 12 svtslafspdgawlasGsdDgtvriWd 38 + + +++s+ ++ l++++ Dg v ++d tr|H2XJV1|H2XJV1_CIOIN 17 PFRYCDWSRTSRQLTTCCFDGRVNVYD 43 445577*********9999******98 PP == domain 2 score: 2.0 bits; conditional E-value: 4.9 EEEEEEETTSSEEEEEET.......TSEEEEEE CS WD40 13 vtslafspdgawlasGsd.......DgtvriWd 38 + +l f d + ++++sd +++ +Wd tr|H2XJV1|H2XJV1_CIOIN 103 ILALEFFTDEKSFVASSDevnrqsaEHNLIVWD 135 677776666666566665466666688888887 PP == domain 3 score: 2.8 bits; conditional E-value: 2.8 SEEEEEEETTSSEEEEEE CS WD40 12 svtslafspdgawlasGs 29 +v s++ +dg+++ sGs tr|H2XJV1|H2XJV1_CIOIN 200 PV-SFDITKDGSFVYSGS 216 36.88899********97 PP >> tr|H2XJI2|H2XJI2_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.9 0.1 0.61 52 4 26 .. 4 30 .. 1 44 [. 0.71 2 ? 10.1 0.0 0.013 1.1 4 34 .. 51 82 .. 32 87 .. 0.86 Alignments for each domain: == domain 1 score: 4.9 bits; conditional E-value: 0.61 EEEEESS..SS..EEEEEEETTSSEEE CS WD40 4 lrtltGH..ss..vtslafspdgawla 26 l+t++ ++ ++l+++ d+++l+ tr|H2XJI2|H2XJI2_CIOIN 4 LHTIRDTpsNPkgLCCLSVNNDNSFLV 30 566654433224599*********986 PP == domain 2 score: 10.1 bits; conditional E-value: 0.013 EEEEESS.SSEEEEEEETTSSEEEEEETTSEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtv 34 + t+ +H s+ ++af+++ + la++s +gtv tr|H2XJI2|H2XJI2_CIOIN 51 VSTINAHdSPLAAMAFNSSATKLATASSKGTV 82 567889*88899************88657766 PP >> tr|F6WEC1|F6WEC1_CIOIN WD repeat-containing protein 43 OS=Ciona intestinalis OX=7719 GN=LOC100185508 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.4 0.1 0.41 34 17 38 .] 10 30 .. 4 30 .. 0.84 2 ? 15.9 3.3 0.0002 0.017 5 38 .] 108 143 .. 104 143 .. 0.84 3 ? 3.2 0.7 2 1.7e+02 12 38 .] 155 183 .. 145 183 .. 0.76 4 ? 1.2 0.1 8.9 7.6e+02 5 17 .. 191 204 .. 187 238 .. 0.44 Alignments for each domain: == domain 1 score: 5.4 bits; conditional E-value: 0.41 EEETTSSEEEEEETTSEEEEEE CS WD40 17 afspdgawlasGsdDgtvriWd 38 afs + ++ + +s Dg +++Wd tr|F6WEC1|F6WEC1_CIOIN 10 AFSGEDKLAL-CSLDGVLHVWD 30 5888899988.677*******9 PP == domain 2 score: 15.9 bits; conditional E-value: 0.0002 EEEE.SSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 5 rtlt.GHss.vtslafspdgawlasGsdDgtvriWd 38 ++t GH++ ++++++ +d + ++++s D+++ Wd tr|F6WEC1|F6WEC1_CIOIN 108 CKFTgGHNGrINDICWKSDDNTFFTCSNDHHIIEWD 143 55555**556**********************9998 PP == domain 3 score: 3.2 bits; conditional E-value: 2 S....EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 12 s....vtslafspdgawlasGsdDgtvriWd 38 v+s+++ p+ + l+s +t+++W+ tr|F6WEC1|F6WEC1_CIOIN 155 AdkweVHSIKVGPHCKTLLS-A-GKTIKLWS 183 04557999999999999995.6.9******5 PP == domain 4 score: 1.2 bits; conditional E-value: 8.9 EEEESS.SSEEEEE CS WD40 5 rtltGH.ssvtsla 17 r + GH s+v s+ tr|F6WEC1|F6WEC1_CIOIN 191 RRFNGHlSPVISML 204 56677777754552 PP >> tr|H2XQY4|H2XQY4_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.1 0.1 9.4 8e+02 6 36 .. 156 191 .. 148 193 .. 0.63 2 ? 1.5 0.0 6.8 5.8e+02 14 38 .] 212 235 .. 199 235 .. 0.70 3 ? 7.9 0.0 0.065 5.5 7 38 .] 245 281 .. 239 281 .. 0.63 Alignments for each domain: == domain 1 score: 1.1 bits; conditional E-value: 9.4 EEESS.SSEEEEEEETTSSE....EEEEETTSEEEE CS WD40 6 tltGH.ssvtslafspdgaw....lasGsdDgtvri 36 tl H +v +l+ ++++ ++s++d gt++ tr|H2XQY4|H2XQY4_CIOIN 156 TLHDHtLPVMCLSGLQSSKSngvdMVSADDGGTIHC 191 456675559999844443334446678887887765 PP == domain 2 score: 1.5 bits; conditional E-value: 6.8 EEEEEETTSSEEEEEETTSEEEEEE CS WD40 14 tslafspdgawlasGsdDgtvriWd 38 ts++ ++g ++G g++ri+d tr|H2XQY4|H2XQY4_CIOIN 212 TSVKLVQNGMV-VAGYLTGHIRIFD 235 55544444444.569889*****98 PP == domain 3 score: 7.9 bits; conditional E-value: 0.065 EESS.SSEEEEE...EETTSSE......EEEEETTSEEEEEE CS WD40 7 ltGH.ssvtsla...fspdgaw......lasGsdDgtvriWd 38 + GH v+sl+ ++s+s+D +r+W+ tr|H2XQY4|H2XQY4_CIOIN 245 IAGHvRAVSSLDattL-----EekssynVISASEDSFLRVWK 281 5689444555535552.....04444468899*********6 PP >> tr|F7A6H8|F7A6H8_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.4 0.0 7.4 6.3e+02 20 33 .. 152 165 .. 136 167 .. 0.66 2 ? 10.8 0.1 0.008 0.68 7 37 .. 180 209 .. 174 210 .. 0.79 Alignments for each domain: == domain 1 score: 1.4 bits; conditional E-value: 7.4 TTSSEEEEEETTSE CS WD40 20 pdgawlasGsdDgt 33 +++ l++G+++g tr|F7A6H8|F7A6H8_CIOIN 152 VHNNVLVCGGWNGY 165 24455999999986 PP == domain 2 score: 10.8 bits; conditional E-value: 0.008 EESS.SSEEEEEEETTSSE....EEEEETTSEEEEE CS WD40 7 ltGH.ssvtslafspdgaw....lasGsdDgtvriW 37 + H s+v+++ ++ ++sGs++ ++iW tr|F7A6H8|F7A6H8_CIOIN 180 TKSHeSDVHAV------DFrdnvIVSGSRKEDLKIW 209 478*999****......44444489*********** PP >> tr|F7AAA1|F7AAA1_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.5 0.0 0.0023 0.2 3 38 .] 34 69 .. 32 69 .. 0.83 2 ? 2.6 0.0 3.2 2.7e+02 5 19 .. 210 227 .. 206 245 .. 0.74 Alignments for each domain: == domain 1 score: 12.5 bits; conditional E-value: 0.0023 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 + r+l s+vt++ f ++++ l+ G+dDg v ++d tr|F7AAA1|F7AAA1_CIOIN 34 PYRILICDaSPVTCC-FAHNKKILFVGTDDGCVLLYD 69 55666666678*999.9******999*********98 PP == domain 2 score: 2.6 bits; conditional E-value: 3.2 EE..EESS.SSEEEEEEE CS WD40 5 rt..ltGH.ssvtslafs 19 rt l G ssvts++f+ tr|F7AAA1|F7AAA1_CIOIN 210 RTynLPGNkSSVTSISFN 227 5511569*888****875 PP >> tr|H2Y2L9|H2Y2L9_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.8 0.0 5.7 4.9e+02 20 27 .. 47 54 .. 15 86 .. 0.54 2 ? 7.6 0.0 0.08 6.8 9 34 .. 129 155 .. 115 158 .] 0.77 Alignments for each domain: == domain 1 score: 1.8 bits; conditional E-value: 5.7 TTSSEEEE CS WD40 20 pdgawlas 27 +d++ l+s tr|H2Y2L9|H2Y2L9_CIOIN 47 SDNKVLVS 54 33333333 PP == domain 2 score: 7.6 bits; conditional E-value: 0.08 SS.SSEEEEEEETTSSEEEEEETTSEE CS WD40 9 GH.ssvtslafspdgawlasGsdDgtv 34 G+ +++ +++f p+g+ ++s +++ + tr|H2Y2L9|H2Y2L9_CIOIN 129 GQlKGIEGICFLPSGDIVVSDRENHRI 155 67778************9853456666 PP >> tr|F6T9F6|F6T9F6_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.0 0.0 0.029 2.4 8 37 .. 11 41 .. 4 42 .. 0.85 2 ? 3.5 0.1 1.7 1.4e+02 9 37 .. 54 83 .. 46 83 .. 0.65 Alignments for each domain: == domain 1 score: 9.0 bits; conditional E-value: 0.029 ESSSS.EEEEEEETTSSEEEEEETTSEEEEE CS WD40 8 tGHss.vtslafspdgawlasGsdDgtvriW 37 ++Hs +t++ f+p + +++G +Dg + W tr|F6T9F6|F6T9F6_CIOIN 11 DTHSRtITAVGFHPVRREIVAGFEDGIMKWW 41 579446***********************99 PP == domain 2 score: 3.5 bits; conditional E-value: 1.7 SS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 9 GH.ssvtslafspdgawlasGsdDgtvriW 37 H ++ t++++ +++ l+s+ Dg + W tr|F6T9F6|F6T9F6_CIOIN 54 EHkGWLTDFQYWAEHKTLLSCANDGLIIAW 83 58555899984444444567877*988665 PP >> tr|H2XWF9|H2XWF9_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.4 0.2 0.099 8.3 4 22 .. 242 260 .. 239 278 .. 0.72 2 ? 5.3 0.0 0.45 38 10 28 .. 289 311 .. 283 321 .. 0.73 Alignments for each domain: == domain 1 score: 7.4 bits; conditional E-value: 0.099 EEEEESSSSEEEEEEETTS CS WD40 4 lrtltGHssvtslafspdg 22 + +++ Hs+v+s+a++p+g tr|H2XWF9|H2XWF9_CIOIN 242 VLSFRNHSPVSSVAWNPHG 260 66899**99****988876 PP == domain 2 score: 5.3 bits; conditional E-value: 0.45 S.SS...EEEEEEETTSSEEEEE CS WD40 10 H.ss...vtslafspdgawlasG 28 H s vt l fspdg ++++ tr|H2XWF9|H2XWF9_CIOIN 289 HiSRcagVTRLLFSPDGEKVLAS 311 543344599999******98865 PP >> tr|H2XPL4|H2XPL4_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.9 0.1 0.016 1.3 4 37 .. 38 71 .. 35 72 .. 0.74 Alignments for each domain: == domain 1 score: 9.9 bits; conditional E-value: 0.016 EEEEESS.SSE.EEEEEETTSSEEEEEETTSEEEEE CS WD40 4 lrtltGH.ssv.tslafspdgawlasGsdDgtvriW 37 lr + +H s++ ts+ sp ++l ++s+D+tv W tr|H2XPL4|H2XPL4_CIOIN 38 LRMWQAHdSDItTSCLISPT-NFL-TASMDQTVAHW 71 677889*888*777766666.444.5777****888 PP >> tr|F6X5V4|F6X5V4_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.9 0.1 1.2 1e+02 25 37 .. 53 64 .. 3 65 .. 0.78 2 ? 4.1 0.2 1.1 93 25 37 .. 129 140 .. 74 141 .. 0.75 3 ? 3.4 0.1 1.7 1.5e+02 25 37 .. 205 216 .. 150 216 .. 0.75 Alignments for each domain: == domain 1 score: 3.9 bits; conditional E-value: 1.2 EEEEETTSEEEEE CS WD40 25 lasGsdDgtvriW 37 l++ s+D+t+ iW tr|F6X5V4|F6X5V4_CIOIN 53 LLT-SEDKTLLIW 64 344.55******* PP == domain 2 score: 4.1 bits; conditional E-value: 1.1 EEEEETTSEEEEE CS WD40 25 lasGsdDgtvriW 37 l++ s+D+t+ iW tr|F6X5V4|F6X5V4_CIOIN 129 LLT-SEDKTLLIW 140 344.55******9 PP == domain 3 score: 3.4 bits; conditional E-value: 1.7 EEEEETTSEEEEE CS WD40 25 lasGsdDgtvriW 37 l++ s+D+t+ iW tr|F6X5V4|F6X5V4_CIOIN 205 LLT-SEDKTLLIW 216 345.559999999 PP >> tr|F7ALA2|F7ALA2_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 GN=LOC100179163 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.6 0.0 6.3 5.3e+02 24 37 .. 23 45 .. 9 46 .. 0.67 2 ? 3.0 0.1 2.3 1.9e+02 3 29 .. 148 169 .. 146 184 .. 0.61 3 ? 5.7 0.1 0.34 28 16 38 .] 208 231 .. 192 231 .. 0.72 4 ? 8.2 0.1 0.053 4.5 3 35 .. 238 272 .. 236 272 .. 0.83 Alignments for each domain: == domain 1 score: 1.6 bits; conditional E-value: 6.3 E......EEEEET...TSEEEEE CS WD40 24 w......lasGsd...DgtvriW 37 +a+Gs+ +++v +W tr|F7ALA2|F7ALA2_CIOIN 23 SlqkssvFAAGSYedtKNSVSLW 45 43334436889855569999999 PP == domain 2 score: 3.0 bits; conditional E-value: 2.3 EEEEEESS.SS..EEEEEEETTSSEEEEEE CS WD40 3 clrtltGH.ss..vtslafspdgawlasGs 29 +lr++ H +s +ts+ ++l+s s tr|F7ALA2|F7ALA2_CIOIN 148 PLRVI-EHgDScpITSV------RYLTS-S 169 56665.4863357****......77643.3 PP == domain 3 score: 5.7 bits; conditional E-value: 0.34 EEEETTSSE.EEEEETTSEEEEEE CS WD40 16 lafspdgaw.lasGsdDgtvriWd 38 ++ + ++ la+G+ Dg v ++d tr|F7ALA2|F7ALA2_CIOIN 208 VDHHATQSHvLATGGADGCVTLFD 231 443444444278**9****99887 PP == domain 4 score: 8.2 bits; conditional E-value: 0.053 EEEEEESS.SSEEEEEEETTSSE.EEEEETTSEEE CS WD40 3 clrtltGH.ssvtslafspdgaw.lasGsdDgtvr 35 ++ +l H +v+ ++f++ ++ l+++s Dg+ r tr|F7ALA2|F7ALA2_CIOIN 238 PVNKLQVHdEDVWEVRFHKTSPShLFTCSQDGSAR 272 5677889*888*****9999999446******976 PP >> tr|F7APX0|F7APX0_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.3 0.2 0.051 4.3 8 31 .. 124 148 .. 117 154 .. 0.84 Alignments for each domain: == domain 1 score: 8.3 bits; conditional E-value: 0.051 ESS.SSEEEEEEETTSSEEEEEETT CS WD40 8 tGH.ssvtslafspdgawlasGsdD 31 +GH s ++s++++ +g++ ++ s+D tr|F7APX0|F7APX0_CIOIN 124 RGHdSAIHSISVHGSGRYAITTSRD 148 8**777************9999966 PP >> tr|F6S7F2|F6S7F2_CIOIN Mediator of RNA polymerase II transcription subunit 16 OS=Ciona intestinalis OX=7719 GN=MED16 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.7 1.0 0.018 1.5 11 37 .. 67 95 .. 56 96 .. 0.79 Alignments for each domain: == domain 1 score: 9.7 bits; conditional E-value: 0.018 SS..EEEEEEETTSSEEEEEETTSEEEEE CS WD40 11 ss..vtslafspdgawlasGsdDgtvriW 37 ++ +t+l++++ g+ l+sG+ g + +W tr|F6S7F2|F6S7F2_CIOIN 67 NDgaITCLQWDHTGTRLVSGDNHGLCCLW 95 3445**************99878888877 PP >> tr|H2XRV2|H2XRV2_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.9 0.3 0.28 23 15 34 .. 198 217 .. 142 218 .] 0.81 Alignments for each domain: == domain 1 score: 5.9 bits; conditional E-value: 0.28 EEEEETTSSEEEEEETTSEE CS WD40 15 slafspdgawlasGsdDgtv 34 s+++sp g+ ++ G +Dg++ tr|H2XRV2|H2XRV2_CIOIN 198 SVCWSPKGKQMMIGKKDGSI 217 67799999999999889987 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (38 nodes) Target sequences: 16678 (5370518 residues searched) Passed MSV filter: 691 (0.0414318); expected 333.6 (0.02) Passed bias filter: 585 (0.0350761); expected 333.6 (0.02) Passed Vit filter: 244 (0.0146301); expected 16.7 (0.001) Passed Fwd filter: 198 (0.0118719); expected 0.2 (1e-05) Initial search space (Z): 16678 [actual number of targets] Domain search space (domZ): 197 [number of targets reported over threshold] # CPU time: 0.20u 0.01s 00:00:00.21 Elapsed: 00:00:00.07 # Mc/sec: 2915.42 // [ok]