# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/WD40.hmm.txt # target sequence database: proteomes/Petromyzon_marinus.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: WD40 [M=38] Accession: PF00400.32 Description: WD domain, G-beta repeat Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.3e-64 211.4 15.6 4.7e-10 39.5 0.2 7.4 7 tr|S4R592|S4R592_PETMA POC1 centriolar protein A OS=Petromyz 1.4e-63 208.9 37.5 5.1e-08 33.1 1.9 13.9 13 tr|S4RKI4|S4RKI4_PETMA Uncharacterized protein OS=Petromyzon 4.6e-63 207.3 15.9 3.1e-09 36.9 0.9 7.7 7 tr|S4RTD7|S4RTD7_PETMA Platelet-activating factor acetylhydr 1e-59 196.7 43.9 7.5e-10 38.9 0.0 14.2 14 tr|S4RG93|S4RG93_PETMA Uncharacterized protein OS=Petromyzon 1.7e-50 167.5 9.9 1.4e-11 44.4 0.4 7.0 6 tr|S4REI8|S4REI8_PETMA TAF5-like RNA polymerase II, p300/CBP 5.1e-50 166.0 25.6 8e-09 35.6 0.1 7.1 7 tr|S4RBB3|S4RBB3_PETMA Receptor for activated C kinase 1 OS= 5.6e-50 165.8 25.3 1.1e-08 35.2 0.1 7.1 7 tr|Q801L9|Q801L9_PETMA Guanine nucleotide-binding protein OS 1.9e-49 164.2 14.5 1.8e-08 34.5 0.0 7.2 7 tr|S4RGQ6|S4RGQ6_PETMA Small nuclear ribonucleoprotein 40 (U 5.1e-49 162.8 30.2 7.3e-07 29.4 0.2 11.6 11 tr|S4R4D5|S4R4D5_PETMA Uncharacterized protein OS=Petromyzon 5.5e-49 162.7 39.1 3.8e-07 30.3 0.1 7.8 7 tr|S4RUD3|S4RUD3_PETMA F-box and WD repeat domain containing 1.7e-47 158.0 33.8 2e-08 34.4 0.8 7.2 7 tr|S4RIF4|S4RIF4_PETMA Probable cytosolic iron-sulfur protei 2.8e-46 154.1 36.1 8.5e-08 32.4 0.1 10.6 10 tr|S4RJG5|S4RJG5_PETMA Transducin (beta)-like 3 OS=Petromyzo 3.1e-46 154.0 30.2 1.6e-07 31.5 0.2 10.8 10 tr|S4RD71|S4RD71_PETMA Uncharacterized protein OS=Petromyzon 2.5e-42 141.7 29.2 1.7e-08 34.5 0.1 7.4 7 tr|S4RI51|S4RI51_PETMA Sperm associated antigen 16 OS=Petrom 4.8e-41 137.6 21.1 1.8e-07 31.3 0.0 7.1 7 tr|S4RB83|S4RB83_PETMA WD repeat domain 61 OS=Petromyzon mar 4.7e-40 134.4 18.6 2.7e-08 34.0 0.2 7.3 7 tr|S4RS47|S4RS47_PETMA Pleiotropic regulator 1 OS=Petromyzon 5.7e-40 134.2 12.3 3.9e-09 36.6 0.1 7.1 6 tr|S4RVN2|S4RVN2_PETMA Striatin, calmodulin binding protein 2.6e-39 132.1 47.6 3.8e-07 30.3 0.0 18.9 16 tr|S4RMK2|S4RMK2_PETMA Uncharacterized protein OS=Petromyzon 7.1e-39 130.7 48.6 3.9e-08 33.4 0.1 19.3 15 tr|S4RVX9|S4RVX9_PETMA WD repeat domain 90 OS=Petromyzon mar 1e-38 130.2 50.0 3.6e-08 33.5 0.1 19.1 15 tr|S4RVZ0|S4RVZ0_PETMA WD repeat domain 90 OS=Petromyzon mar 6.5e-38 127.7 0.8 2.5e-06 27.7 0.0 6.5 6 tr|S4RZZ2|S4RZZ2_PETMA Cleavage stimulation factor, 3' pre-R 2.4e-37 125.9 47.7 3.6e-07 30.4 0.0 19.0 16 tr|S4RMJ0|S4RMJ0_PETMA Uncharacterized protein OS=Petromyzon 6.8e-37 124.5 16.1 1e-08 35.3 0.0 6.1 6 tr|S4RT22|S4RT22_PETMA Guanine nucleotide binding protein (G 1.8e-35 120.0 12.0 1.2e-07 31.8 0.5 8.1 7 tr|S4RSC4|S4RSC4_PETMA WD repeat, sterile alpha motif and U- 7.4e-35 118.0 16.0 2.9e-06 27.5 0.0 8.5 8 tr|S4RLE5|S4RLE5_PETMA WD repeat domain 86 OS=Petromyzon mar 1.1e-34 117.5 23.2 8.2e-06 26.1 0.4 7.4 7 tr|S4RKB3|S4RKB3_PETMA Ribosome biogenesis protein WDR12 OS= 1.2e-34 117.3 9.3 1.4e-06 28.5 0.0 8.3 7 tr|S4RJW8|S4RJW8_PETMA Uncharacterized protein OS=Petromyzon 2.6e-34 116.3 13.0 0.00052 20.4 0.2 9.5 9 tr|S4RPW0|S4RPW0_PETMA Uncharacterized protein OS=Petromyzon 2.4e-33 113.2 26.0 0.0008 19.8 0.0 11.8 11 tr|S4R6Y0|S4R6Y0_PETMA Mitogen-activated protein kinase bind 3.3e-33 112.8 10.7 0.00022 21.6 0.1 8.2 8 tr|S4R9B8|S4R9B8_PETMA MTOR associated protein, LST8 homolog 4.9e-33 112.2 21.0 0.00031 21.1 0.0 12.2 12 tr|S4RY15|S4RY15_PETMA Cilia and flagella associated protein 1.4e-32 110.8 9.4 3e-07 30.6 0.0 7.5 7 tr|S4RP24|S4RP24_PETMA WD repeat and SOCS box containing 1 O 1.7e-32 110.6 14.9 4.8e-06 26.8 0.0 7.6 7 tr|S4R6L2|S4R6L2_PETMA Beta-transducin repeat containing E3 2.2e-31 107.0 19.8 1.1e-05 25.7 0.0 7.5 7 tr|S4RN14|S4RN14_PETMA WD repeat domain 33 OS=Petromyzon mar 2.6e-31 106.8 19.8 1.1e-05 25.7 0.0 7.5 7 tr|S4RN08|S4RN08_PETMA WD repeat domain 33 OS=Petromyzon mar 4.2e-31 106.1 12.3 2.3e-05 24.7 0.0 7.8 6 tr|S4R5W5|S4R5W5_PETMA Uncharacterized protein OS=Petromyzon 5.2e-31 105.8 7.2 5.7e-07 29.7 0.0 7.4 6 tr|S4RSZ8|S4RSZ8_PETMA Coatomer subunit beta' OS=Petromyzon 1.2e-30 104.6 2.9 4.1e-10 39.7 0.0 6.7 6 tr|S4RZE6|S4RZE6_PETMA Serine/threonine kinase receptor asso 9.5e-30 101.8 21.4 2.4e-05 24.6 0.5 8.1 7 tr|S4RF70|S4RF70_PETMA Angio-associated, migratory cell prot 1.2e-29 101.5 7.4 1.7e-09 37.7 0.4 7.1 6 tr|S4RH39|S4RH39_PETMA Ribosome biogenesis protein BOP1 OS=P 4.7e-29 99.6 19.4 1.6e-06 28.3 0.2 7.3 6 tr|S4RKZ7|S4RKZ7_PETMA WD repeat domain 37 OS=Petromyzon mar 5.1e-29 99.5 19.4 1.6e-06 28.3 0.2 7.3 6 tr|S4RKZ5|S4RKZ5_PETMA WD repeat domain 37 OS=Petromyzon mar 3.4e-28 96.9 11.6 3.7e-05 24.0 0.1 6.9 6 tr|S4RRY9|S4RRY9_PETMA WD repeat domain 48a OS=Petromyzon ma 3.4e-28 96.9 11.6 3.7e-05 24.0 0.1 6.9 6 tr|S4RRY8|S4RRY8_PETMA WD repeat domain 48a OS=Petromyzon ma 5.2e-28 96.3 14.2 2.6e-08 34.0 0.1 6.6 5 tr|S4RJQ9|S4RJQ9_PETMA WD repeat domain 26a OS=Petromyzon ma 6.3e-28 96.1 24.4 0.0078 16.7 0.7 10.5 9 tr|S4RVI8|S4RVI8_PETMA Elongator acetyltransferase complex s 3.7e-27 93.7 1.8 1.9e-07 31.2 0.2 6.1 5 tr|S4RW84|S4RW84_PETMA WD repeat domain 82 OS=Petromyzon mar 6e-27 93.0 8.9 9.7e-07 29.0 0.1 6.4 6 tr|S4R7I3|S4R7I3_PETMA Fizzy/cell division cycle 20 related 1.1e-26 92.2 13.4 4.5e-07 30.1 0.0 5.7 5 tr|S4RRX9|S4RRX9_PETMA Retinoblastoma binding protein 4, lik 2.2e-26 91.2 12.8 1.8e-05 25.0 0.0 7.1 6 tr|S4RRF5|S4RRF5_PETMA THO complex 3 OS=Petromyzon marinus O 1.6e-25 88.5 10.3 1.4e-05 25.4 0.0 5.2 5 tr|S4RWD0|S4RWD0_PETMA Guanine nucleotide binding protein (G 3.8e-25 87.3 9.7 1.2e-05 25.6 0.1 5.3 5 tr|S4R828|S4R828_PETMA Ribosomal RNA processing 9, small sub 5.4e-25 86.8 32.7 0.00037 20.9 0.7 10.6 8 tr|S4R8U3|S4R8U3_PETMA Echinoderm microtubule associated pro 1.7e-24 85.2 16.5 7.2e-07 29.4 0.2 6.4 5 tr|S4RGF4|S4RGF4_PETMA Peroxisomal biogenesis factor 7 OS=Pe 3.5e-23 81.1 3.5 3.4e-08 33.6 0.1 4.4 4 tr|S4R709|S4R709_PETMA Uncharacterized protein OS=Petromyzon 1e-22 79.6 1.8 8.8e-06 26.0 0.0 6.2 6 tr|S4RSZ5|S4RSZ5_PETMA BUB3 mitotic checkpoint protein OS=Pe 1.6e-21 75.8 8.1 8.4e-07 29.2 0.2 6.6 6 tr|S4RYN1|S4RYN1_PETMA Uncharacterized protein OS=Petromyzon 3.4e-21 74.8 15.9 2.7e-08 33.9 0.1 9.8 9 tr|S4RRJ1|S4RRJ1_PETMA WD repeat domain 36 OS=Petromyzon mar 4.4e-21 74.4 9.7 5.1e-06 26.7 0.2 4.1 4 tr|S4RPA2|S4RPA2_PETMA Uncharacterized protein OS=Petromyzon 9.5e-21 73.4 5.7 6.7e-07 29.5 0.1 4.3 3 tr|S4R754|S4R754_PETMA Uncharacterized protein OS=Petromyzon 1.9e-20 72.4 3.3 5.1e-05 23.6 0.1 4.7 4 tr|S4RWE5|S4RWE5_PETMA WD repeat domain 44 OS=Petromyzon mar 3.5e-20 71.6 17.3 2.1e-07 31.1 0.3 6.0 4 tr|S4RCA4|S4RCA4_PETMA Cell division cycle 20 homolog OS=Pet 3.9e-20 71.4 10.4 4.9e-06 26.8 0.1 5.2 5 tr|S4RGD4|S4RGD4_PETMA Uncharacterized protein OS=Petromyzon 6e-20 70.8 21.1 0.018 15.5 0.8 7.3 7 tr|S4RBD7|S4RBD7_PETMA Uncharacterized protein OS=Petromyzon 6.8e-20 70.7 6.6 1.6e-05 25.2 0.2 5.5 4 tr|S4RJU8|S4RJU8_PETMA PAK1 interacting protein 1 OS=Petromy 3.6e-19 68.4 15.6 6.7e-07 29.5 0.2 6.8 5 tr|S4RNJ7|S4RNJ7_PETMA WD repeat and HMG-box DNA binding pro 4.6e-19 68.0 6.3 3.6e-05 24.0 0.1 6.5 6 tr|S4R928|S4R928_PETMA Utp15, U3 small nucleolar ribonucleop 1.6e-18 66.3 16.7 4e-05 23.9 0.1 7.8 7 tr|S4RLP9|S4RLP9_PETMA Uncharacterized protein OS=Petromyzon 3.8e-18 65.1 2.8 1.2e-05 25.6 0.1 3.4 3 tr|S4RTC4|S4RTC4_PETMA Transducin beta like 1 X-linked OS=Pe 1.3e-17 63.4 18.4 0.012 16.0 1.3 7.6 7 tr|S4RB78|S4RB78_PETMA Uncharacterized protein OS=Petromyzon 1.5e-17 63.2 2.2 1.4e-05 25.3 0.0 4.3 4 tr|S4RC75|S4RC75_PETMA Denticleless E3 ubiquitin protein lig 1.8e-17 62.9 15.7 3e-06 27.5 0.5 6.0 5 tr|S4RBT9|S4RBT9_PETMA Uncharacterized protein OS=Petromyzon 2.3e-17 62.6 11.2 9.4e-05 22.7 0.0 5.1 5 tr|S4RAQ6|S4RAQ6_PETMA Ddb1 and cul4 associated factor 11 OS 2.7e-17 62.4 12.1 6.6e-06 26.4 0.1 5.1 4 tr|S4RIT1|S4RIT1_PETMA WD repeat domain 59 OS=Petromyzon mar 2.7e-17 62.4 19.9 0.012 16.0 1.3 7.5 7 tr|S4RBI9|S4RBI9_PETMA Uncharacterized protein OS=Petromyzon 1.7e-16 59.9 3.4 3.5e-05 24.1 0.2 3.1 3 tr|S4RV11|S4RV11_PETMA Uncharacterized protein OS=Petromyzon 3.1e-16 59.1 9.9 0.0018 18.7 0.0 6.8 6 tr|S4RYJ9|S4RYJ9_PETMA WD repeat domain 55 OS=Petromyzon mar 4.6e-16 58.5 2.9 2.1e-10 40.6 0.7 2.9 2 tr|S4RVS6|S4RVS6_PETMA TNF receptor-associated factor 7 OS=P 7.4e-16 57.9 15.0 0.0019 18.6 0.1 5.7 5 tr|S4RZ26|S4RZ26_PETMA Excision repair cross-complementation 9e-16 57.6 8.8 0.027 14.9 0.0 6.7 6 tr|S4R572|S4R572_PETMA COP1, E3 ubiquitin ligase OS=Petromyz 9.5e-16 57.5 8.8 0.028 14.9 0.0 6.8 6 tr|S4R569|S4R569_PETMA COP1, E3 ubiquitin ligase OS=Petromyz 1.6e-15 56.9 4.9 0.00049 20.5 0.2 4.4 4 tr|S4RUY6|S4RUY6_PETMA Coronin OS=Petromyzon marinus OX=7757 2.5e-15 56.2 5.8 3.8e-07 30.3 0.6 4.6 3 tr|S4R5F5|S4R5F5_PETMA Uncharacterized protein OS=Petromyzon 3.6e-15 55.7 14.1 0.00037 20.8 0.7 6.4 6 tr|S4RGJ4|S4RGJ4_PETMA Uncharacterized protein OS=Petromyzon 9.3e-15 54.4 20.6 0.0012 19.3 0.3 6.1 5 tr|S4RR59|S4RR59_PETMA Excision repair cross-complementation 1.4e-14 53.8 14.3 0.0021 18.5 0.1 7.7 6 tr|S4RYV9|S4RYV9_PETMA Uncharacterized protein OS=Petromyzon 1.9e-14 53.4 9.9 3.4e-05 24.1 0.0 6.0 5 tr|S4REX6|S4REX6_PETMA EARP complex and GARP complex interac 2.3e-14 53.2 13.2 8.2e-05 22.9 0.0 5.7 4 tr|S4RCW9|S4RCW9_PETMA WD repeat domain 91 OS=Petromyzon mar 1.2e-13 50.9 10.9 9.7e-05 22.7 0.1 6.3 5 tr|S4RWV0|S4RWV0_PETMA F-box and WD repeat domain containing 1.5e-13 50.6 10.0 8.1e-08 32.4 0.7 3.1 2 tr|S4RP65|S4RP65_PETMA WD repeat domain 77 OS=Petromyzon mar 1.6e-13 50.5 1.0 5e-07 29.9 0.0 2.8 2 tr|S4RAG9|S4RAG9_PETMA Uncharacterized protein OS=Petromyzon 1.6e-13 50.5 9.4 0.00011 22.5 0.4 5.6 4 tr|S4RRP0|S4RRP0_PETMA THO complex 6 OS=Petromyzon marinus O 2e-13 50.2 12.1 0.004 17.6 0.1 7.4 5 tr|S4R7W3|S4R7W3_PETMA WD repeat domain 7 OS=Petromyzon mari 2.3e-13 50.0 17.6 0.0092 16.4 0.4 6.9 6 tr|S4RVF3|S4RVF3_PETMA Actin-related protein 2/3 complex sub 3.8e-13 49.3 5.7 0.00017 21.9 0.1 5.7 4 tr|S4RE16|S4RE16_PETMA WD repeat domain 13 OS=Petromyzon mar 6.6e-13 48.5 19.9 0.00066 20.1 1.2 6.6 6 tr|S4RL25|S4RL25_PETMA Actin-related protein 2/3 complex sub 7.2e-13 48.4 13.9 0.0002 21.7 0.1 6.3 6 tr|S4RMD1|S4RMD1_PETMA Uncharacterized protein OS=Petromyzon 8.6e-13 48.2 1.8 4.7e-06 26.8 0.0 3.6 2 tr|S4R9E4|S4R9E4_PETMA Embryonic ectoderm development OS=Pet 1.2e-12 47.7 11.2 3.8e-06 27.1 0.0 6.9 4 tr|S4RN03|S4RN03_PETMA WD repeat domain 75 OS=Petromyzon mar 1.3e-12 47.6 11.6 3.6e-06 27.2 0.0 6.9 4 tr|S4RMZ8|S4RMZ8_PETMA WD repeat domain 75 OS=Petromyzon mar 1.6e-12 47.4 5.8 1.1e-06 28.8 0.0 4.7 4 tr|S4RN07|S4RN07_PETMA WD repeat domain 75 OS=Petromyzon mar 1.6e-12 47.3 6.5 5.3e-06 26.7 0.2 5.0 4 tr|S4RL64|S4RL64_PETMA F-box and WD repeat domain containing 2e-12 47.0 17.8 6.5e-05 23.2 0.4 4.5 4 tr|S4R5N3|S4R5N3_PETMA Uncharacterized protein OS=Petromyzon 2.1e-12 46.9 17.5 0.0002 21.7 0.1 5.8 5 tr|S4RQS4|S4RQS4_PETMA Ribonucleic acid export 1 OS=Petromyz 3.8e-12 46.1 15.2 6.4e-05 23.3 1.5 6.2 5 tr|S4RQE0|S4RQE0_PETMA Retinoblastoma binding protein 5 OS=P 4.8e-12 45.8 22.3 0.0053 17.2 0.2 9.1 6 tr|S4RZB0|S4RZB0_PETMA WD repeat domain 66 OS=Petromyzon mar 7.6e-12 45.2 6.1 6.2e-06 26.5 0.1 5.5 3 tr|S4RL58|S4RL58_PETMA Damage-specific DNA binding protein 2 1.4e-11 44.3 0.5 0.029 14.8 0.1 4.6 4 tr|S4RHR5|S4RHR5_PETMA Uncharacterized protein OS=Petromyzon 1.5e-11 44.2 0.5 0.03 14.8 0.1 4.6 4 tr|S4RHR7|S4RHR7_PETMA Uncharacterized protein OS=Petromyzon 2.2e-11 43.7 0.9 5.8e-11 42.4 0.1 2.1 1 tr|S4RJ06|S4RJ06_PETMA Uncharacterized protein OS=Petromyzon 2.2e-11 43.7 16.1 0.0041 17.5 0.2 6.2 5 tr|S4RQ06|S4RQ06_PETMA SREBF chaperone OS=Petromyzon marinus 3.3e-11 43.2 9.9 0.00077 19.8 0.2 5.2 4 tr|S4RW37|S4RW37_PETMA Uncharacterized protein OS=Petromyzon 5.9e-11 42.4 2.3 0.00019 21.7 0.1 4.2 2 tr|S4RGB9|S4RGB9_PETMA Prolactin regulatory element binding 6.4e-11 42.2 11.6 0.0001 22.6 0.2 4.7 4 tr|S4RFR1|S4RFR1_PETMA Uncharacterized protein OS=Petromyzon 7.3e-11 42.1 5.6 0.013 16.0 0.0 7.5 5 tr|S4RC43|S4RC43_PETMA UTP4, small subunit processome compon 7.8e-11 42.0 11.6 0.00011 22.5 0.2 4.7 4 tr|S4RFR8|S4RFR8_PETMA Uncharacterized protein OS=Petromyzon 8.8e-11 41.8 0.5 0.00067 20.0 0.1 3.1 3 tr|S4RCC0|S4RCC0_PETMA SEC13 homolog, nuclear pore and COPII 1.7e-10 40.9 14.4 6.5e-05 23.2 0.4 5.5 5 tr|S4RFU2|S4RFU2_PETMA Phosphoinositide-3-kinase, regulatory 5.2e-10 39.4 3.9 2.8e-05 24.4 0.0 4.6 4 tr|S4RM77|S4RM77_PETMA WD repeat domain 92 OS=Petromyzon mar 5.5e-10 39.3 1.3 0.021 15.3 0.0 6.5 3 tr|S4RPY1|S4RPY1_PETMA SEC31 homolog B, COPII coat complex c 8.6e-10 38.7 3.7 0.13 12.8 0.1 5.2 4 tr|S4RP68|S4RP68_PETMA Uncharacterized protein OS=Petromyzon 2.1e-09 37.5 15.0 0.00033 21.0 1.1 5.8 4 tr|S4RND1|S4RND1_PETMA WD repeat domain 43 OS=Petromyzon mar 3.2e-09 36.9 1.1 2.5e-07 30.9 0.2 2.7 2 tr|S4RZE3|S4RZE3_PETMA Uncharacterized protein OS=Petromyzon 3.3e-09 36.8 10.5 0.0089 16.5 0.1 4.3 4 tr|S4RB54|S4RB54_PETMA SEC13 homolog, nuclear pore and COPII 6e-09 36.0 0.2 0.64 10.6 0.1 5.4 3 tr|S4R4K3|S4R4K3_PETMA Uncharacterized protein OS=Petromyzon 1e-08 35.3 2.6 1.7e-05 25.1 0.7 3.6 3 tr|S4RXK0|S4RXK0_PETMA Uncharacterized protein OS=Petromyzon 1.3e-08 35.0 1.6 1.4 9.5 0.0 5.9 4 tr|S4RT27|S4RT27_PETMA WD repeat domain 35 OS=Petromyzon mar 1.3e-08 34.9 2.2 2e-05 24.8 0.7 3.5 3 tr|S4RXJ9|S4RXJ9_PETMA Uncharacterized protein OS=Petromyzon 1.6e-08 34.6 4.0 0.00013 22.3 0.1 4.7 4 tr|S4R4H6|S4R4H6_PETMA Uncharacterized protein OS=Petromyzon 1.9e-08 34.5 15.8 0.0037 17.7 0.2 6.7 5 tr|S4RHS2|S4RHS2_PETMA Dynein, axonemal, intermediate chain 2.4e-08 34.1 9.1 0.0029 18.0 0.1 5.4 4 tr|S4R6V7|S4R6V7_PETMA WD repeat domain 74 OS=Petromyzon mar 4.8e-08 33.1 0.0 0.047 14.2 0.0 3.4 3 tr|S4RN48|S4RN48_PETMA Uncharacterized protein OS=Petromyzon 1.7e-07 31.4 3.0 0.056 14.0 0.1 5.0 3 tr|S4RER8|S4RER8_PETMA WD repeat domain 45 OS=Petromyzon mar 4.1e-07 30.2 0.0 5.6e-07 29.8 0.0 1.1 1 tr|S4RQD8|S4RQD8_PETMA Uncharacterized protein OS=Petromyzon 6.9e-07 29.5 2.2 1.7 9.2 0.0 4.4 3 tr|S4RH86|S4RH86_PETMA WD repeat domain 21 OS=Petromyzon mar 1.1e-06 28.8 8.8 0.15 12.6 0.8 5.1 4 tr|S4RN20|S4RN20_PETMA Echinoderm microtubule associated pro 1.7e-06 28.2 8.5 0.7 10.5 0.0 6.0 4 tr|S4R8W1|S4R8W1_PETMA Intraflagellar transport 122 OS=Petro 2.7e-06 27.6 0.7 0.00089 19.6 0.0 3.9 2 tr|S4RWJ9|S4RWJ9_PETMA Enhancer of mRNA decapping 4 OS=Petro 3.3e-06 27.3 1.0 0.0035 17.8 0.0 3.3 2 tr|S4RX94|S4RX94_PETMA Uncharacterized protein OS=Petromyzon 4e-06 27.1 3.1 6.4 7.4 0.0 6.3 5 tr|S4RUC8|S4RUC8_PETMA WD repeat domain 34 OS=Petromyzon mar 4e-06 27.1 0.5 7.8e-06 26.1 0.5 1.5 1 tr|S4RUH1|S4RUH1_PETMA Uncharacterized protein OS=Petromyzon 4.1e-06 27.0 0.1 1.2 9.7 0.0 3.4 3 tr|S4RP31|S4RP31_PETMA Uncharacterized protein OS=Petromyzon 5.1e-06 26.8 2.5 0.023 15.2 0.1 3.8 2 tr|S4RY26|S4RY26_PETMA WD repeat-containing protein 76 OS=Pe 6.9e-06 26.3 9.1 0.021 15.3 1.0 4.6 3 tr|S4RZL7|S4RZL7_PETMA Ddb1 and cul4 associated factor 7 OS= 9.9e-06 25.8 0.5 0.013 15.9 0.0 3.0 2 tr|S4RD53|S4RD53_PETMA Uncharacterized protein OS=Petromyzon 1.1e-05 25.7 0.1 1.8 9.2 0.0 3.6 3 tr|S4RP34|S4RP34_PETMA Uncharacterized protein OS=Petromyzon 1.3e-05 25.4 2.2 0.00061 20.2 0.0 4.1 2 tr|S4R5N2|S4R5N2_PETMA WD repeat domain 46 OS=Petromyzon mar 2.6e-05 24.5 12.1 0.0088 16.5 0.2 5.4 3 tr|S4RNL0|S4RNL0_PETMA Uncharacterized protein OS=Petromyzon 3.7e-05 24.0 11.5 0.16 12.5 0.4 5.2 4 tr|S4R495|S4R495_PETMA Uncharacterized protein OS=Petromyzon 4.9e-05 23.6 10.9 0.0026 18.2 0.2 4.0 2 tr|S4R902|S4R902_PETMA Uncharacterized protein OS=Petromyzon 8e-05 23.0 0.0 0.00022 21.6 0.0 1.8 1 tr|S4R9Z7|S4R9Z7_PETMA Uncharacterized protein OS=Petromyzon 9.5e-05 22.7 1.0 0.55 10.8 0.1 3.2 2 tr|S4RY24|S4RY24_PETMA WD repeat-containing protein 76 OS=Pe 0.00015 22.1 12.8 0.073 13.6 0.6 6.5 4 tr|S4RA27|S4RA27_PETMA Dynein, cytoplasmic 1, intermediate c 0.00018 21.8 5.8 0.29 11.7 0.1 4.1 3 tr|S4RJI4|S4RJI4_PETMA Dynein, axonemal, intermediate chain 0.00027 21.3 0.1 0.52 10.9 0.0 3.2 2 tr|S4R7S7|S4R7S7_PETMA Uncharacterized protein OS=Petromyzon 0.00042 20.7 3.2 0.00049 20.5 0.1 2.4 1 tr|S4RGA6|S4RGA6_PETMA Uncharacterized protein OS=Petromyzon 0.0007 20.0 1.4 17 6.1 0.3 4.2 3 tr|S4RRN0|S4RRN0_PETMA Uncharacterized protein OS=Petromyzon 0.0021 18.4 0.6 0.0042 17.5 0.1 1.8 1 tr|S4RUJ1|S4RUJ1_PETMA Uncharacterized protein OS=Petromyzon 0.0031 17.9 0.0 1.6 9.3 0.0 2.2 2 tr|S4RFD4|S4RFD4_PETMA Uncharacterized protein OS=Petromyzon 0.004 17.6 0.1 15 6.2 0.0 3.6 3 tr|S4RD17|S4RD17_PETMA Nucleolar protein 10 OS=Petromyzon ma 0.0049 17.3 0.1 0.026 15.0 0.1 2.4 1 tr|S4RD29|S4RD29_PETMA LLGL1, scribble cell polarity complex 0.0083 16.6 0.0 0.044 14.3 0.0 2.3 1 tr|S4RD28|S4RD28_PETMA LLGL1, scribble cell polarity complex 0.0099 16.3 6.5 0.75 10.4 0.0 5.3 3 tr|S4RET4|S4RET4_PETMA WD repeat domain 54 OS=Petromyzon mar ------ inclusion threshold ------ 0.012 16.0 1.2 0.6 10.7 0.0 2.7 2 tr|S4RNU8|S4RNU8_PETMA Uncharacterized protein OS=Petromyzon 0.022 15.3 0.0 0.088 13.3 0.0 2.2 1 tr|S4RIT6|S4RIT6_PETMA Vacuolar protein sorting-associated p 0.022 15.2 8.2 7.3 7.3 0.0 5.6 2 tr|S4RZK2|S4RZK2_PETMA Uncharacterized protein OS=Petromyzon 0.032 14.7 10.9 1.1 9.8 0.6 5.4 3 tr|S4RE65|S4RE65_PETMA Lysosomal trafficking regulator OS=Pe 0.068 13.7 0.1 0.14 12.7 0.1 1.5 1 tr|S4RG58|S4RG58_PETMA Uncharacterized protein OS=Petromyzon 0.076 13.5 0.1 0.076 13.5 0.1 2.1 1 tr|S4R606|S4R606_PETMA Uncharacterized protein OS=Petromyzon 0.093 13.3 5.3 5.9 7.6 0.0 4.0 3 tr|S4RMY9|S4RMY9_PETMA Uncharacterized protein OS=Petromyzon 0.2 12.2 2.8 1.6e+02 3.1 0.0 4.8 3 tr|S4RL41|S4RL41_PETMA Eukaryotic translation initiation fac 0.21 12.2 6.0 11 6.7 0.3 3.3 3 tr|S4RMX0|S4RMX0_PETMA Uncharacterized protein OS=Petromyzon 0.28 11.7 6.6 11 6.7 0.1 5.0 3 tr|S4RCS6|S4RCS6_PETMA Uncharacterized protein OS=Petromyzon 1.7 9.2 6.0 28 5.4 0.1 4.7 2 tr|S4RTK9|S4RTK9_PETMA Tripartite motif containing 2b OS=Pet 4.2 8.0 5.2 93 3.8 0.1 4.2 2 tr|S4RYX9|S4RYX9_PETMA Uncharacterized protein OS=Petromyzon Domain annotation for each sequence (and alignments): >> tr|S4R592|S4R592_PETMA POC1 centriolar protein A OS=Petromyzon marinus OX=7757 GN=POC1A PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.1 0.0 5.6e-09 4.3e-07 4 38 .] 11 46 .. 8 46 .. 0.94 2 ! 31.8 0.0 1.7e-09 1.3e-07 7 37 .. 56 87 .. 50 88 .. 0.89 3 ! 29.6 0.2 8.5e-09 6.6e-07 5 37 .. 96 129 .. 93 130 .. 0.92 4 ! 39.5 0.2 6.1e-12 4.7e-10 3 38 .] 136 172 .. 134 172 .. 0.94 5 ! 35.9 0.2 8.1e-11 6.3e-09 2 38 .] 177 214 .. 176 214 .. 0.93 6 ! 25.2 0.0 2e-07 1.6e-05 2 36 .. 219 254 .. 218 256 .. 0.92 7 ! 24.5 0.0 3.4e-07 2.6e-05 2 38 .] 261 298 .. 260 298 .. 0.91 Alignments for each domain: == domain 1 score: 30.1 bits; conditional E-value: 5.6e-09 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 r+++GH + +ts++f+p+ + lasGs+D +++W+ tr|S4R592|S4R592_PETMA 11 ERHFKGHrDTITSVDFNPNMKQLASGSMDACLMVWN 46 69*****888*************************8 PP == domain 2 score: 31.8 bits; conditional E-value: 1.7e-09 EESSSS.EEEEEEETTSSEEEEEETTSEEEEE CS WD40 7 ltGHss.vtslafspdgawlasGsdDgtvriW 37 + GH++ v s++fsp+g++++s+s+D+tvr+W tr|S4R592|S4R592_PETMA 56 FVGHKDaVMSVQFSPSGHLVVSASRDKTVRLW 87 67**555************************* PP == domain 3 score: 29.6 bits; conditional E-value: 8.5e-09 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvriW 37 +++++H v+s++fs dg+ l+++sdD+++++W tr|S4R592|S4R592_PETMA 96 TVFKAHtATVRSVSFSADGQSLVTASDDKSIKVW 129 5799**777************************* PP == domain 4 score: 39.5 bits; conditional E-value: 6.1e-12 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 l++l H ++v+s +fspdg++++sGsdD+tvr+Wd tr|S4R592|S4R592_PETMA 136 FLYSLNQHsNWVRSAKFSPDGRLIVSGSDDRTVRVWD 172 688999**999*************************9 PP == domain 5 score: 35.9 bits; conditional E-value: 8.1e-11 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +c++t+ H ++v+ ++f+p+g+ +a+++ D+tv++Wd tr|S4R592|S4R592_PETMA 177 ECVHTFYEHgGFVNQVDFHPSGTCIAAAGTDNTVKVWD 214 8********777*************98777*******9 PP == domain 6 score: 25.2 bits; conditional E-value: 2e-07 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvri 36 ++l+++ H v+sl+f+p g++l+++s D t+++ tr|S4R592|S4R592_PETMA 219 KLLQHYQVHgAAVNSLSFHPTGNYLITASNDSTLKV 254 6899*****666**********************98 PP == domain 7 score: 24.5 bits; conditional E-value: 3.4e-07 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++ +tl GH ++ t++afs+ g+++asG+ D v++W+ tr|S4R592|S4R592_PETMA 261 RLFYTLHGHqGPATAVAFSRAGDFFASGGSDEQVMVWK 298 67789****8889***************88*******6 PP >> tr|S4RKI4|S4RKI4_PETMA Uncharacterized protein OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.5 0.0 5.3e-05 0.0041 6 38 .] 116 149 .. 112 149 .. 0.88 2 ! 31.8 0.0 1.7e-09 1.3e-07 4 38 .] 157 191 .. 154 191 .. 0.89 3 ! 14.1 0.1 0.00064 0.05 3 37 .. 197 234 .. 195 235 .. 0.77 4 ! 32.9 0.2 7.7e-10 5.9e-08 7 38 .] 245 277 .. 238 277 .. 0.90 5 ? 3.7 0.0 1.2 94 13 34 .. 309 329 .. 291 333 .. 0.77 6 ? 8.7 0.0 0.032 2.5 4 38 .] 340 376 .. 338 376 .. 0.82 7 ! 33.1 1.9 6.6e-10 5.1e-08 4 37 .. 383 417 .. 379 418 .. 0.91 8 ? 1.3 0.0 7.4 5.8e+02 12 28 .. 470 490 .. 452 499 .. 0.68 9 ! 25.9 0.1 1.3e-07 9.7e-06 1 37 [. 504 541 .. 504 542 .. 0.94 10 ! 13.4 0.2 0.0011 0.082 6 38 .] 552 584 .. 548 584 .. 0.81 11 ? 6.1 0.0 0.21 16 3 37 .. 590 627 .. 588 628 .. 0.73 12 ! 28.4 0.1 2e-08 1.6e-06 3 38 .] 635 671 .. 633 671 .. 0.94 13 ? 6.0 0.2 0.24 18 2 38 .] 679 713 .. 678 713 .. 0.78 Alignments for each domain: == domain 1 score: 17.5 bits; conditional E-value: 5.3e-05 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 6 tltGH.ssvtslafspdgawlasGsdDgtvriWd 38 + ++H + v++ afs++g ++as+ Dg ++ W+ tr|S4RKI4|S4RKI4_PETMA 116 VVRAHaGAVYHAAFSRSGEYVASCAGDGYLKKWN 149 5689*777**************9955*****998 PP == domain 2 score: 31.8 bits; conditional E-value: 1.7e-09 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 + t+ +H +v ++af p+g+ +a+Gs D+tv++W+ tr|S4RKI4|S4RKI4_PETMA 157 MATY-AHdEPVLCCAFAPNGRVIATGSADHTVKLWN 191 5666.8*778*************************8 PP == domain 3 score: 14.1 bits; conditional E-value: 0.00064 EEEEEESS.SSE..EEEEEETTSSEEEEEETTSEEEEE CS WD40 3 clrtltGH.ssv..tslafspdgawlasGsdDgtvriW 37 +l+ ++H + v + +a ++++la++s D ++++W tr|S4RKI4|S4RKI4_PETMA 197 LLGPHRAHdGEVqhCTFAHAFHKPLLATCSQDSSIKLW 234 5667789955595445558889999************* PP == domain 4 score: 32.9 bits; conditional E-value: 7.7e-10 EESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 7 ltGH.ssvtslafspdgawlasGsdDgtvriWd 38 l GH ++v++++fspd + l+s+s D+t+++W+ tr|S4RKI4|S4RKI4_PETMA 245 LLGHsGPVRCCCFSPDDQRLVSCSVDCTLKVWS 277 559*777*************************5 PP == domain 5 score: 3.7 bits; conditional E-value: 1.2 EEEEEEETTSSEEEEEETTSEE CS WD40 13 vtslafspdgawlasGsdDgtv 34 +s+a+spdg+ +++ + v tr|S4RKI4|S4RKI4_PETMA 309 LRSCAWSPDGRRIVAVA-ENIV 329 57899******998655.5555 PP == domain 6 score: 8.7 bits; conditional E-value: 0.032 EEEEESS..SSEEEEEEETTSSEEEEE.ETTSEEEEEE CS WD40 4 lrtltGH..ssvtslafspdgawlasG.sdDgtvriWd 38 +l++H + + ++af pd+ a G s ++ +W+ tr|S4RKI4|S4RKI4_PETMA 340 ENVLRTHahCTILAVAFAPDSLHCAVGlS-SYSLEMWN 376 56677774355************999*88.99999998 PP == domain 7 score: 33.1 bits; conditional E-value: 6.6e-10 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 + ++GH ++v+++afs dg+wl+s+s+D+tv +W tr|S4RKI4|S4RKI4_PETMA 383 TADYRGHvGWVHGVAFSADGSWLLSASEDHTVSLW 417 4559***999************************* PP == domain 8 score: 1.3 bits; conditional E-value: 7.4 S....EEEEEEETTSSEEEEE CS WD40 12 s....vtslafspdgawlasG 28 + v++++ s dg+ a G tr|S4RKI4|S4RKI4_PETMA 470 PlpsrVRCCCLSGDGRIAAMG 490 144559999999999986545 PP == domain 9 score: 25.9 bits; conditional E-value: 1.3e-07 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 g+ l++l+GH ++v+ ++f dg+ l+s+sdD t+r+W tr|S4RKI4|S4RKI4_PETMA 504 GNILHVLEGHtKCVRQCQFLMDGHVLLSCSDDATLRMW 541 5789******999*9999******************** PP == domain 10 score: 13.4 bits; conditional E-value: 0.0011 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 6 tltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +l+ H +v +++ + + +l s+s Dgt ++Wd tr|S4RKI4|S4RKI4_PETMA 552 VLDEHtEDVKCFCLLSQSLLL-SCSFDGTTKLWD 584 577897789999877777776.6888*******9 PP == domain 11 score: 6.1 bits; conditional E-value: 0.21 EEEEEESSSS...E.EEEEEETTSSEEEEEETTSEEEEE CS WD40 3 clrtltGHss...v.tslafspdgawlasGsdDgtvriW 37 ++rt+ G+ + + +++ ++ g ++++++ D+t +W tr|S4RKI4|S4RKI4_PETMA 590 LVRTFCGQEPhaaIlSCQVMPSLGLFVVTCT-DKTAQVW 627 5788877733456746776777777899999.******* PP == domain 12 score: 28.4 bits; conditional E-value: 2e-08 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +l++l GH ++v+s+ fspdg+ la+G+d g v++W+ tr|S4RKI4|S4RKI4_PETMA 635 PLHVLQGHtDCVRSCGFSPDGKILATGDDEGFVMLWS 671 79******777*************************5 PP == domain 13 score: 6.0 bits; conditional E-value: 0.24 EEEEEEESSSSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGHssvtslafspdgawlasGsdDgtvriWd 38 +c+ t + H +vt ++f ++g+ l+s+ ++++Wd tr|S4RKI4|S4RKI4_PETMA 679 SCQPTARHHAWVTQVSFVREGRILLSA--ADNIKFWD 713 67777788899**************76..55556665 PP >> tr|S4RTD7|S4RTD7_PETMA Platelet-activating factor acetylhydrolase 1b, regulatory subunit 1b OS=Petromyzon marinus OX # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.5 0.0 7e-07 5.4e-05 7 38 .] 43 75 .. 39 75 .. 0.94 2 ! 31.8 0.1 1.6e-09 1.2e-07 4 38 .] 82 117 .. 79 117 .. 0.93 3 ! 33.5 0.0 4.7e-10 3.7e-08 2 37 .. 122 158 .. 121 159 .. 0.93 4 ! 30.1 0.1 5.6e-09 4.4e-07 2 37 .. 164 200 .. 163 201 .. 0.96 5 ! 24.0 0.0 4.9e-07 3.8e-05 2 38 .] 206 263 .. 205 263 .. 0.91 6 ! 36.9 0.9 3.9e-11 3.1e-09 3 38 .] 269 305 .. 267 305 .. 0.96 7 ! 31.5 0.1 2e-09 1.5e-07 2 37 .. 310 346 .. 309 347 .. 0.93 Alignments for each domain: == domain 1 score: 23.5 bits; conditional E-value: 7e-07 EESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 7 ltGH.ssvtslafspdgawlasGsdDgtvriWd 38 l+GH s+vt + f+p + ++s+s+D t+++Wd tr|S4RTD7|S4RTD7_PETMA 43 LSGHrSPVTRVIFHPVFSVIVSASEDATIKVWD 75 89**999*************************9 PP == domain 2 score: 31.8 bits; conditional E-value: 1.6e-09 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 rtl+GH +sv +++f+ +g++las+s D tv++Wd tr|S4RTD7|S4RTD7_PETMA 82 ERTLKGHtDSVQDISFDLSGKMLASCSADMTVKLWD 117 689****888*************************9 PP == domain 3 score: 33.5 bits; conditional E-value: 4.7e-10 EEEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEE CS WD40 2 qclrtltGHss.vtslafspdgawlasGsdDgtvriW 37 +clrt GH++ v+s+af p+g+ l+s+s+D+t ++W tr|S4RTD7|S4RTD7_PETMA 122 ECLRTMHGHDHnVSSVAFMPNGDHLVSASRDKTMKMW 158 8********556************************* PP == domain 4 score: 30.1 bits; conditional E-value: 5.6e-09 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 c++t+tGH +v+ ++ ++dg+++as+s D+tvr+W tr|S4RTD7|S4RTD7_PETMA 164 YCVKTFTGHrEWVRMVRPNQDGSLIASCSNDQTVRVW 200 69*******999************************* PP == domain 5 score: 24.0 bits; conditional E-value: 4.9e-07 EEEEEEESSSS.EEEEEEETTSSE....................EEEEETTSEEEEEE CS WD40 2 qclrtltGHss.vtslafspdgaw....................lasGsdDgtvriWd 38 +c +l+ H + v ++++ pd a l+sGs+D+t+++Wd tr|S4RTD7|S4RTD7_PETMA 206 ECKAELREHEHvVECVSWAPDAASpvileatgaeakkggkpgpyLLSGSRDKTIKMWD 263 6889999**8867****99999999999999999999999999999***********9 PP == domain 6 score: 36.9 bits; conditional E-value: 3.9e-11 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 c+ tl GH ++v+++ f+p g++++s+ dD+t+r+Wd tr|S4RTD7|S4RTD7_PETMA 269 CVITLVGHdNWVRGVLFHPGGKFILSCADDKTLRVWD 305 999*****999*************************9 PP == domain 7 score: 31.5 bits; conditional E-value: 2e-09 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 +c+++l +H +vtsl+f++ +++++Gs D++v++W tr|S4RTD7|S4RTD7_PETMA 310 RCQKSLAAHeHFVTSLDFHKTAPYVITGSVDQSVKVW 346 79*******666************************* PP >> tr|S4RG93|S4RG93_PETMA Uncharacterized protein OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.7 0.0 5.4 4.2e+02 3 28 .. 2 27 .. 1 37 [. 0.68 2 ? 5.3 0.1 0.4 31 6 36 .. 46 77 .. 41 77 .. 0.84 3 ! 10.9 0.2 0.0067 0.52 10 38 .] 90 117 .. 81 117 .. 0.81 4 ? 7.7 0.0 0.071 5.5 18 38 .] 142 162 .. 126 162 .. 0.90 5 ! 38.9 0.0 9.7e-12 7.5e-10 2 37 .. 167 203 .. 166 204 .. 0.93 6 ? 7.4 0.0 0.088 6.8 14 36 .. 230 252 .. 208 253 .. 0.77 7 ! 12.2 0.3 0.0025 0.19 8 37 .. 265 297 .. 259 298 .. 0.84 8 ? 4.0 0.0 1 78 13 37 .. 324 346 .. 313 346 .. 0.74 9 ! 31.4 0.3 2.3e-09 1.8e-07 5 37 .. 364 397 .. 360 398 .. 0.89 10 ! 28.8 2.8 1.5e-08 1.2e-06 4 38 .] 406 441 .. 403 441 .. 0.93 11 ! 19.2 0.2 1.6e-05 0.0012 2 37 .. 446 480 .. 445 481 .. 0.81 12 ! 11.1 0.0 0.0058 0.45 25 37 .. 525 537 .. 485 537 .. 0.83 13 ! 17.9 0.0 4e-05 0.0031 2 37 .. 543 579 .. 542 580 .. 0.87 14 ! 19.6 0.1 1.2e-05 0.00095 8 38 .] 593 624 .. 586 624 .. 0.86 Alignments for each domain: == domain 1 score: 1.7 bits; conditional E-value: 5.4 EEEEEESS.SSEEEEEEETTSSEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasG 28 l++ ++H ++++++f +++ + G tr|S4RG93|S4RG93_PETMA 2 ELQSVSAHsEGISACCFLSENLICL-G 27 578999**666*9998877766655.4 PP == domain 2 score: 5.3 bits; conditional E-value: 0.4 EEESS.SSEEEEEEETTSSEEEEEETTSEEEE CS WD40 6 tltGH.ssvtslafspdgawlasGsdDgtvri 36 + +H v+++a s g+ +++ s+D+++++ tr|S4RG93|S4RG93_PETMA 46 SVQAHrLRVSGCAPSTCGRQVLTVSWDCSLKV 77 456885559*********************97 PP == domain 3 score: 10.9 bits; conditional E-value: 0.0067 SSSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 10 HssvtslafspdgawlasGsdDgtvriWd 38 + +++a++p ga+ ++Gs+D + Wd tr|S4RG93|S4RG93_PETMA 90 R-PLSCVAVHPLGALAVTGSWDSALVTWD 117 2.489******************999998 PP == domain 4 score: 7.7 bits; conditional E-value: 0.071 EETTSSEEEEEETTSEEEEEE CS WD40 18 fspdgawlasGsdDgtvriWd 38 +p+g++las+ Dg v +W+ tr|S4RG93|S4RG93_PETMA 142 QQPSGKYLASAALDGEVILWS 162 58*******9999*******5 PP == domain 5 score: 38.9 bits; conditional E-value: 9.7e-12 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 + l+t+ GH ++v++++f pdg++l++G+dD++vr+W tr|S4RG93|S4RG93_PETMA 167 TVLGTYLGHkGPVNCVQFTPDGRYLLTGGDDNKVRVW 203 568999***777************************* PP == domain 6 score: 7.4 bits; conditional E-value: 0.088 EEEEEETTSSEEEEE.ETTSEEEE CS WD40 14 tslafspdgawlasG.sdDgtvri 36 +++ spdg+ la G + g+vr+ tr|S4RG93|S4RG93_PETMA 230 LCVSGSPDGSQLAVGlH-SGSVRV 252 4999***********66.****97 PP == domain 7 score: 12.2 bits; conditional E-value: 0.0025 ESS.SSEEEEEEETTSSE........EEEEETTSEEEEE CS WD40 8 tGH.ssvtslafspdgaw........lasGsdDgtvriW 37 +H v+++ w lasGs+ g+v++W tr|S4RG93|S4RG93_PETMA 265 QAHpHAVHCV------VWllgaggtaLASGSEGGSVKVW 297 578546****......9988888888999********** PP == domain 8 score: 4.0 bits; conditional E-value: 1 EEEEEEETTSSEEEEEETTSEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriW 37 v++l + ++la++sdD v +W tr|S4RG93|S4RG93_PETMA 324 VRAL--ACSDRFLAAASDDAMVVLW 346 6666..446788**9*********9 PP == domain 9 score: 31.4 bits; conditional E-value: 2.3e-09 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvriW 37 ++l GH + vt+++fspdg+ l++Gs+D+++ +W tr|S4RG93|S4RG93_PETMA 364 GVLWGHeGAVTCCCFSPDGSQLLTGSKDRSLVFW 397 56669*888************************* PP == domain 10 score: 28.8 bits; conditional E-value: 1.5e-08 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 lr+ + H ++vt++ +++dg ++s+s D+tv++Wd tr|S4RG93|S4RG93_PETMA 406 LRVPSSHgDWVTGVHWDRDGETVVSCSNDCTVKVWD 441 788999*777*************************9 PP == domain 11 score: 19.2 bits; conditional E-value: 1.6e-05 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 ++r+l+GH ssv+++ s ++sGs Dg +r W tr|S4RG93|S4RG93_PETMA 446 HLQRELRGHqSSVNCV--SVTDGVILSGSSDGELRAW 480 5799*****999****..444445679*88*****99 PP == domain 12 score: 11.1 bits; conditional E-value: 0.0058 EEEEETTSEEEEE CS WD40 25 lasGsdDgtvriW 37 as+sdDgtvriW tr|S4RG93|S4RG93_PETMA 525 AASASDDGTVRIW 537 47889******** PP == domain 13 score: 17.9 bits; conditional E-value: 4e-05 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 + l +l+ H ++v +la+ +++ +s+s+Dg+v++W tr|S4RG93|S4RG93_PETMA 543 SELASLSEHsGPVQALAVTALSNYALSASKDGSVKMW 579 678899***777888888888***99*********** PP == domain 14 score: 19.6 bits; conditional E-value: 1.2e-05 ESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 8 tGH.ssvtslafspdgawlasGsdDgtvriWd 38 + H vt+++ sp g+ ++sG +Dg+v +W+ tr|S4RG93|S4RG93_PETMA 593 SEHqRAVTAVQASPGGRHVVSGAEDGHVLLWS 624 568445*************************5 PP >> tr|S4REI8|S4REI8_PETMA TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor OS=Petromyzo # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.9 0.0 1.1 83 24 38 .] 284 298 .. 270 298 .. 0.88 2 ! 25.9 0.0 1.2e-07 9.3e-06 3 38 .] 335 371 .. 333 371 .. 0.93 3 ! 21.6 0.3 2.7e-06 0.00021 3 37 .. 377 412 .. 375 413 .. 0.91 4 ! 37.6 0.1 2.4e-11 1.9e-09 3 38 .] 419 455 .. 418 455 .. 0.95 5 ! 33.4 0.0 5.1e-10 4e-08 6 38 .] 464 497 .. 459 497 .. 0.93 6 ! 44.4 0.4 1.8e-13 1.4e-11 3 38 .] 503 539 .. 501 539 .. 0.92 Alignments for each domain: == domain 1 score: 3.9 bits; conditional E-value: 1.1 EEEEEETTSEEEEEE CS WD40 24 wlasGsdDgtvriWd 38 +la+G +D v++W+ tr|S4REI8|S4REI8_PETMA 284 MLAAGYEDSRVMLWS 298 4899*9********5 PP == domain 2 score: 25.9 bits; conditional E-value: 1.2e-07 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++tl++H ++v++++f p ga l+s+s+D +vr+Wd tr|S4REI8|S4REI8_PETMA 335 DVKTLRAHsGPVYAVRFLPGGAGLLSCSEDASVRFWD 371 589*****777*************************9 PP == domain 3 score: 21.6 bits; conditional E-value: 2.7e-06 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 ++ ++ GH +v+++++s g +++sGs D+t r+W tr|S4REI8|S4REI8_PETMA 377 NTAVYQGHaYPVWDVDVSALGLYFCSGSHDRTARLW 412 67899***777****************99******* PP == domain 4 score: 37.6 bits; conditional E-value: 2.4e-11 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +lr++ GH s+v+ ++f+p+g+++a+Gs D+tvr+W+ tr|S4REI8|S4REI8_PETMA 419 PLRVYAGHvSDVNVVRFHPNGSYVATGSADRTVRLWS 455 689*****999*************************5 PP == domain 5 score: 33.4 bits; conditional E-value: 5.1e-10 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 6 tltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +tGH + v +lafsp g++lasG++D+ vr+Wd tr|S4REI8|S4REI8_PETMA 464 LFTGHrGAVLALAFSPGGRLLASGGEDQRVRLWD 497 589**988*************************9 PP == domain 6 score: 44.4 bits; conditional E-value: 1.8e-13 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +++l+GH +++t+l+fspdg+ lasGs Dg+vr+Wd tr|S4REI8|S4REI8_PETMA 503 IVKELRGHsDDITCLSFSPDGSALASGSSDGSVRVWD 539 5789****777****************99*******9 PP >> tr|S4RBB3|S4RBB3_PETMA Receptor for activated C kinase 1 OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.2 0.0 6.7e-05 0.0052 4 38 .] 8 44 .. 5 44 .. 0.87 2 ! 35.1 1.5 1.5e-10 1.2e-08 3 38 .] 55 91 .. 53 91 .. 0.92 3 ! 35.6 0.1 1e-10 8e-09 3 38 .] 97 133 .. 95 133 .. 0.93 4 ! 28.0 0.5 2.6e-08 2e-06 5 38 .] 140 178 .. 136 178 .. 0.84 5 ! 23.9 0.2 5e-07 3.9e-05 7 38 .] 188 220 .. 182 220 .. 0.86 6 ! 23.2 0.1 8.5e-07 6.6e-05 1 38 [] 224 260 .. 224 260 .. 0.90 7 ! 16.6 0.0 0.0001 0.008 13 37 .. 287 310 .. 274 311 .. 0.89 Alignments for each domain: == domain 1 score: 17.2 bits; conditional E-value: 6.7e-05 EEEEESS.SSEEEEE.EETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtsla.fspdgawlasGsdDgtvriWd 38 +tl+GH ++vt +a +++ ++++s+s+D+t+ +W+ tr|S4RBB3|S4RBB3_PETMA 8 RGTLKGHnGWVTQIAtTPQFPDMILSASRDKTLIMWK 44 5799***666****99888888899***********6 PP == domain 2 score: 35.1 bits; conditional E-value: 1.5e-10 EEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 ++r+l GH++ v+++ s+dg++ +sGs+Dgt+r+Wd tr|S4RBB3|S4RBB3_PETMA 55 PQRSLHGHGHfVSDVVISSDGQFALSGSWDGTLRLWD 91 799*****555************99***********9 PP == domain 3 score: 35.6 bits; conditional E-value: 1e-10 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++r + GH ++v s+afs d++ ++sGs+D+t+++W+ tr|S4RBB3|S4RBB3_PETMA 97 TTRRFVGHtKDVLSVAFSADNRQIVSGSRDKTIKLWN 133 678899******************************8 PP == domain 4 score: 28.0 bits; conditional E-value: 2.6e-08 EEEE..SS.SSEEEEEEETTSSE..EEEEETTSEEEEEE CS WD40 5 rtlt..GH.ssvtslafspdgaw..lasGsdDgtvriWd 38 +t+ GH +v++++fsp+++ ++s+++D+ v++W+ tr|S4RBB3|S4RBB3_PETMA 140 YTIQedGHtEWVSCVRFSPNNNNpiIVSCGWDKLVKVWN 178 444344**888*************989***********8 PP == domain 5 score: 23.9 bits; conditional E-value: 5e-07 EESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 7 ltGH.ssvtslafspdgawlasGsdDgtvriWd 38 GH + + + +spdg++ asG++Dg ++Wd tr|S4RBB3|S4RBB3_PETMA 188 HIGHtGYLNTVTVSPDGSLCASGGKDGQAMLWD 220 3499666*************************9 PP == domain 6 score: 23.2 bits; conditional E-value: 8.5e-07 TEEEEEEESSSSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 1 gqclrtltGHssvtslafspdgawlasGsdDgtvriWd 38 g++l+tl+G + +++l+fsp+ wl++++ ++++iWd tr|S4RBB3|S4RBB3_PETMA 224 GKHLYTLDGGDTINALCFSPNRYWLCAAT-GPSIKIWD 260 578899998867*************9888.*******9 PP == domain 7 score: 16.6 bits; conditional E-value: 0.0001 EEEEEEETTSSEEEEEETTSEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriW 37 + sla+s dg+ l++G D+ +r+W tr|S4RBB3|S4RBB3_PETMA 287 I-SLAWSADGQTLFAGYTDNFIRVW 310 5.899***********88******* PP >> tr|Q801L9|Q801L9_PETMA Guanine nucleotide-binding protein OS=Petromyzon marinus OX=7757 PE=2 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.2 0.0 6.7e-05 0.0052 4 38 .] 8 44 .. 5 44 .. 0.87 2 ! 35.1 1.5 1.5e-10 1.2e-08 3 38 .] 55 91 .. 53 91 .. 0.92 3 ! 35.2 0.1 1.4e-10 1.1e-08 3 38 .] 97 133 .. 95 133 .. 0.93 4 ! 28.0 0.5 2.6e-08 2e-06 5 38 .] 140 178 .. 136 178 .. 0.84 5 ! 23.9 0.2 5e-07 3.9e-05 7 38 .] 188 220 .. 182 220 .. 0.86 6 ! 23.2 0.1 8.5e-07 6.6e-05 1 38 [] 224 260 .. 224 260 .. 0.90 7 ! 16.6 0.0 0.0001 0.008 13 37 .. 287 310 .. 274 311 .. 0.89 Alignments for each domain: == domain 1 score: 17.2 bits; conditional E-value: 6.7e-05 EEEEESS.SSEEEEE.EETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtsla.fspdgawlasGsdDgtvriWd 38 +tl+GH ++vt +a +++ ++++s+s+D+t+ +W+ tr|Q801L9|Q801L9_PETMA 8 RGTLKGHnGWVTQIAtTPQFPDMILSASRDKTLIMWK 44 5799***666****99888888899***********6 PP == domain 2 score: 35.1 bits; conditional E-value: 1.5e-10 EEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 ++r+l GH++ v+++ s+dg++ +sGs+Dgt+r+Wd tr|Q801L9|Q801L9_PETMA 55 PQRSLHGHGHfVSDVVISSDGQFALSGSWDGTLRLWD 91 799*****555************99***********9 PP == domain 3 score: 35.2 bits; conditional E-value: 1.4e-10 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++r l GH ++v s+afs d++ ++sGs+D+t+++W+ tr|Q801L9|Q801L9_PETMA 97 TTRRLVGHtKDVLSVAFSADNRQIVSGSRDKTIKLWN 133 677899******************************8 PP == domain 4 score: 28.0 bits; conditional E-value: 2.6e-08 EEEE..SS.SSEEEEEEETTSSE..EEEEETTSEEEEEE CS WD40 5 rtlt..GH.ssvtslafspdgaw..lasGsdDgtvriWd 38 +t+ GH +v++++fsp+++ ++s+++D+ v++W+ tr|Q801L9|Q801L9_PETMA 140 YTIQedGHtEWVSCVRFSPNNNNpiIVSCGWDKLVKVWN 178 444344**888*************989***********8 PP == domain 5 score: 23.9 bits; conditional E-value: 5e-07 EESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 7 ltGH.ssvtslafspdgawlasGsdDgtvriWd 38 GH + + + +spdg++ asG++Dg ++Wd tr|Q801L9|Q801L9_PETMA 188 HIGHtGYLNTVTVSPDGSLCASGGKDGQAMLWD 220 3499666*************************9 PP == domain 6 score: 23.2 bits; conditional E-value: 8.5e-07 TEEEEEEESSSSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 1 gqclrtltGHssvtslafspdgawlasGsdDgtvriWd 38 g++l+tl+G + +++l+fsp+ wl++++ ++++iWd tr|Q801L9|Q801L9_PETMA 224 GKHLYTLDGGDTINALCFSPNRYWLCAAT-GPSIKIWD 260 578899998867*************9888.*******9 PP == domain 7 score: 16.6 bits; conditional E-value: 0.0001 EEEEEEETTSSEEEEEETTSEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriW 37 + sla+s dg+ l++G D+ +r+W tr|Q801L9|Q801L9_PETMA 287 I-SLAWSADGQTLFAGYTDNFIRVW 310 5.899***********88******* PP >> tr|S4RGQ6|S4RGQ6_PETMA Small nuclear ribonucleoprotein 40 (U5) OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 33.5 0.0 4.9e-10 3.8e-08 4 38 .] 50 85 .. 47 85 .. 0.90 2 ! 21.8 1.5 2.4e-06 0.00019 5 38 .] 94 128 .. 90 128 .. 0.91 3 ! 22.7 0.0 1.2e-06 9.5e-05 3 38 .] 134 171 .. 132 171 .. 0.80 4 ! 14.3 0.2 0.00057 0.044 13 38 .] 187 212 .. 174 212 .. 0.78 5 ! 34.5 0.0 2.4e-10 1.8e-08 2 38 .] 217 254 .. 216 254 .. 0.90 6 ! 21.2 0.3 3.6e-06 0.00028 2 38 .] 263 304 .. 262 304 .. 0.84 7 ! 19.4 0.0 1.4e-05 0.0011 3 35 .. 310 343 .. 308 344 .. 0.89 Alignments for each domain: == domain 1 score: 33.5 bits; conditional E-value: 4.9e-10 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 + ltGH + v++++f+p+g+ las++ D+t+ +W+ tr|S4RGQ6|S4RGQ6_PETMA 50 IMLLTGHeGEVYCCKFHPNGNTLASAGFDRTILMWN 85 56689**888**************9988*******8 PP == domain 2 score: 21.8 bits; conditional E-value: 2.4e-06 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +l+GH + + ++ +s dg+ ++++s D+tv +Wd tr|S4RGQ6|S4RGQ6_PETMA 94 AHLKGHtGAILDIHYSTDGSTIFTSSTDKTVGLWD 128 799***777**************9999*******9 PP == domain 3 score: 22.7 bits; conditional E-value: 1.2e-06 EEEEEESS.SSEEEEEEETTSSE.EEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgaw.lasGsdDgtvriWd 38 ++ l+GH s+v+++ + g+ ++++sdDgtv++Wd tr|S4RGQ6|S4RGQ6_PETMA 134 RIKRLKGHtSFVNACFPARRGPQmVCTASDDGTVKLWD 171 57789***888*99977777777345789********9 PP == domain 4 score: 14.3 bits; conditional E-value: 0.00057 EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriWd 38 s+ f++ ++ ++sG+ D+ +++Wd tr|S4RGQ6|S4RGQ6_PETMA 187 CLSVTFNDTSDQILSGGIDNVIKVWD 212 336669*******************9 PP == domain 5 score: 34.5 bits; conditional E-value: 2.4e-10 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++++t +GH +svt+l+ spdg++l+s +D++vriWd tr|S4RGQ6|S4RGQ6_PETMA 217 KLIYTMKGHnDSVTGLSLSPDGSYLLSNAMDNSVRIWD 254 678999***666**************8778*******9 PP == domain 6 score: 21.2 bits; conditional E-value: 3.6e-06 EEEEEEESS..SS...EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH..ss...vtslafspdgawlasGsdDgtvriWd 38 +c++++ G ++ +++s+dg+ +++Gs D+ v+iWd tr|S4RGQ6|S4RGQ6_PETMA 263 RCVKIFQGNvhNFeknLLKCSWSHDGSKVSAGSADRFVYIWD 304 799999988544456666888********************9 PP == domain 7 score: 19.4 bits; conditional E-value: 1.4e-05 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvr 35 l++l GH +sv+++af+p+ + ++s+ D+ ++ tr|S4RGQ6|S4RGQ6_PETMA 310 ILYKLPGHaGSVNDVAFHPEEPIVLSCANDKRLY 343 578899**999****************9999876 PP >> tr|S4R4D5|S4R4D5_PETMA Uncharacterized protein OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 12.1 0.1 0.0029 0.22 6 38 .] 55 88 .. 51 88 .. 0.86 2 ? 3.3 0.0 1.6 1.3e+02 13 38 .] 107 136 .. 92 136 .. 0.76 3 ? 9.3 0.0 0.022 1.7 3 32 .. 140 171 .. 138 172 .. 0.84 4 ! 22.3 0.0 1.6e-06 0.00013 4 38 .] 184 219 .. 181 219 .. 0.85 5 ! 25.7 0.6 1.4e-07 1.1e-05 8 38 .] 233 264 .. 223 264 .. 0.89 6 ! 19.4 0.0 1.4e-05 0.0011 2 38 .] 313 355 .. 312 355 .. 0.80 7 ! 11.7 0.1 0.0038 0.3 8 36 .. 367 395 .. 363 395 .. 0.89 8 ? 7.8 0.0 0.063 4.8 15 38 .] 455 478 .. 448 478 .. 0.91 9 ! 21.7 0.0 2.5e-06 0.0002 5 38 .] 491 524 .. 487 524 .. 0.86 10 ! 29.4 0.2 9.5e-09 7.3e-07 5 37 .. 533 566 .. 529 567 .. 0.91 11 ! 11.7 0.9 0.0038 0.3 5 37 .. 576 609 .. 572 609 .. 0.82 Alignments for each domain: == domain 1 score: 12.1 bits; conditional E-value: 0.0029 EEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 6 tltGHss.vtslafspdgawlasGsdDgtvriWd 38 ++t Hs+ v ++ p+g ++asG+ g++riWd tr|S4R4D5|S4R4D5_PETMA 55 VYTEHSHqVLVAKYAPSGFYIASGDVSGKLRIWD 88 57788666877789*******************9 PP == domain 2 score: 3.3 bits; conditional E-value: 1.6 EEEEEEETTSSEEE.EE.E..TTSEEEEEE CS WD40 13 vtslafspdgawla.sG.s..dDgtvriWd 38 + ++++s d++ +a G + + g v +Wd tr|S4R4D5|S4R4D5_PETMA 107 IKDISWSEDSKRIAiVGeGreKYGAVILWD 136 999*********984565444599999998 PP == domain 3 score: 9.3 bits; conditional E-value: 0.022 EEEEEESS.SSEEEEEEETTSSE.EEEEETTS CS WD40 3 clrtltGH.ssvtslafspdgaw.lasGsdDg 32 ++++ GH + ++s++ p+ ++ l+++sdD+ tr|S4R4D5|S4R4D5_PETMA 140 SVGEIAGHtKTINSVDIRPSRPYrLVTASDDN 171 567788**999*****9999999989999775 PP == domain 4 score: 22.3 bits; conditional E-value: 1.6e-06 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 + tl H +v++++fspdga +a+++ Dg + ++d tr|S4R4D5|S4R4D5_PETMA 184 QFTLMDHtRFVNCIRFSPDGARFATAGADGQIFVYD 219 5566679556**************9999******98 PP == domain 5 score: 25.7 bits; conditional E-value: 1.4e-07 ESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 8 tGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++H ++++++++s d++ l+s+s D+tvr+Wd tr|S4R4D5|S4R4D5_PETMA 233 KAHdGGIYAISWSADSSQLISASGDRTVRLWD 264 589777**************9988*******9 PP == domain 6 score: 19.4 bits; conditional E-value: 1.4e-05 EEEEEEESS.SSEEEEE.....EETTSSE...EEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtsla.....fspdgaw...lasGsdDgtvriWd 38 +++r+++GH ++v +la +d + +Gs Dg++ iWd tr|S4R4D5|S4R4D5_PETMA 313 KPIRVIKGHsKPVQALAlnipkD-KD--GqatIYTGSIDGHINIWD 355 789******999**998886633.33..244699***********9 PP == domain 7 score: 11.7 bits; conditional E-value: 0.0038 ESS.SSEEEEEEETTSSEEEEEETTSEEEE CS WD40 8 tGH.ssvtslafspdgawlasGsdDgtvri 36 +GH + v+++a++ +++++ s+s+D t+r+ tr|S4R4D5|S4R4D5_PETMA 367 KGHtNQVSHMAVDESNSLV-SCSMDDTLRF 395 7**999************7.6888***995 PP == domain 8 score: 7.8 bits; conditional E-value: 0.063 EEEEETTSSEEEEEETTSEEEEEE CS WD40 15 slafspdgawlasGsdDgtvriWd 38 +++ +p++ +a G+ Dg+v+++d tr|S4R4D5|S4R4D5_PETMA 455 AVSIHPSNGIVAVGGVDGKVHMYD 478 678899999*************98 PP == domain 9 score: 21.7 bits; conditional E-value: 2.5e-06 EEEESSSSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 5 rtltGHssvtslafspdgawlasGsdDgtvriWd 38 l +H++vt++afsp+ga+la ++ ++ v +++ tr|S4R4D5|S4R4D5_PETMA 491 SALQAHGPVTDVAFSPNGAFLAVCDSNKVVSVFN 524 55889*99**************996599998876 PP == domain 10 score: 29.4 bits; conditional E-value: 9.5e-09 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvriW 37 +t+ GH vt+la+spd + +a+G++D v++W tr|S4R4D5|S4R4D5_PETMA 533 GTFYGHhAKVTCLAWSPDCQHFATGGMDMMVYVW 566 68999*666************************* PP == domain 11 score: 11.7 bits; conditional E-value: 0.0038 EEEESS..SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 5 rtltGH..ssvtslafspdgawlasGsdDgtvriW 37 r+ + H +v+++a+ + ++++++++ D tvr W tr|S4R4D5|S4R4D5_PETMA 576 RIPDSHrmHHVSGIAWLDTHTLVTTSH-DATVRQW 609 5566666446************99989.******* PP >> tr|S4RUD3|S4RUD3_PETMA F-box and WD repeat domain containing 7 OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.1 0.3 5e-08 3.9e-06 5 38 .] 227 260 .. 224 260 .. 0.84 2 ! 24.0 0.6 4.8e-07 3.7e-05 1 38 [] 264 300 .. 264 300 .. 0.87 3 ! 29.3 1.1 1e-08 7.8e-07 1 38 [] 304 340 .. 304 340 .. 0.93 4 ! 30.3 0.1 5e-09 3.8e-07 1 38 [] 344 380 .. 344 380 .. 0.95 5 ! 30.3 0.6 5e-09 3.8e-07 2 38 .] 385 420 .. 384 420 .. 0.94 6 ! 18.7 0.3 2.3e-05 0.0018 1 38 [] 424 460 .. 424 460 .. 0.75 7 ! 28.8 0.1 1.4e-08 1.1e-06 1 38 [] 464 503 .. 464 503 .. 0.83 Alignments for each domain: == domain 1 score: 27.1 bits; conditional E-value: 5e-08 EEEESS.SS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 5 rtltGH.ss.vtslafspdgawlasGsdDgtvriWd 38 ++l+GH ++ +t+l + g+ ++sGsdD+t+++W+ tr|S4RUD3|S4RUD3_PETMA 227 KVLKGHdDHvITCL--QFCGNRIVSGSDDNTLKVWS 260 589***66677***..66777799***********5 PP == domain 2 score: 24.0 bits; conditional E-value: 4.8e-07 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 g+clrtl GH ++v+s + g+ ++sGs D+t+++W+ tr|S4RUD3|S4RUD3_PETMA 264 GKCLRTLVGHtGGVWSS--QMRGNIIVSGSTDRTLKVWN 300 79********888*755..5577789************8 PP == domain 3 score: 29.3 bits; conditional E-value: 1e-08 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 gqc++tl GH s v+++ + +g+ ++sGs+D t+r+Wd tr|S4RUD3|S4RUD3_PETMA 304 GQCVHTLYGHtSTVRCM--HLHGNRVVSGSRDATLRVWD 340 79********777****..8888889************9 PP == domain 4 score: 30.3 bits; conditional E-value: 5e-09 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 gqcl++l GH v+++ + dg+ ++sG +D tv++Wd tr|S4RUD3|S4RUD3_PETMA 344 GQCLHVLAGHvAAVRCV--QYDGRRVVSGAYDYTVKVWD 380 79********999****..889999****99*******9 PP == domain 5 score: 30.3 bits; conditional E-value: 5e-09 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +cl+tl GH + v+sl + dg ++sGs D ++r+Wd tr|S4RUD3|S4RUD3_PETMA 385 TCLHTLQGHtNRVYSL--QFDGVHIVSGSLDTSIRVWD 420 7********999****..889999*************9 PP == domain 6 score: 18.7 bits; conditional E-value: 2.3e-05 TEEEEEEESSSSEE.EEEEETTSSE....EEEEETTSEEEEEE CS WD40 1 gqclrtltGHssvt.slafspdgaw....lasGsdDgtvriWd 38 g+cl+tl GH+s t ++ + l+sG D tv+iWd tr|S4RUD3|S4RUD3_PETMA 424 GTCLHTLVGHQSLTsGM------ELrdniLVSGNADSTVKIWD 460 68********8874444......333333889*88*******9 PP == domain 7 score: 28.8 bits; conditional E-value: 1.4e-08 TEEEEEEESS.SS...EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 1 gqclrtltGH.ss...vtslafspdgawlasGsdDgtvriWd 38 gqcl+tl G ++ vt+l + + ++++++sdDgtv++Wd tr|S4RUD3|S4RUD3_PETMA 464 GQCLQTLQGPnKHqsaVTCL--QFSRKLVVTSSDDGTVKLWD 503 79*****977655667****..556667899**********9 PP >> tr|S4RIF4|S4RIF4_PETMA Probable cytosolic iron-sulfur protein assembly protein CIAO1 OS=Petromyzon marinus OX=7757 G # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 32.8 0.5 7.7e-10 6e-08 2 37 .. 6 42 .. 5 42 .. 0.89 2 ! 14.6 0.8 0.00044 0.034 8 38 .] 57 88 .. 49 88 .. 0.83 3 ! 33.0 0.0 6.8e-10 5.3e-08 4 37 .. 97 131 .. 94 132 .. 0.93 4 ! 23.1 0.1 9.6e-07 7.4e-05 2 37 .. 140 176 .. 139 177 .. 0.92 5 ! 34.4 0.8 2.6e-10 2e-08 4 37 .. 186 220 .. 183 221 .. 0.92 6 ! 17.2 0.8 6.6e-05 0.0051 1 37 [. 240 278 .. 240 279 .. 0.83 7 ! 23.6 0.5 6.4e-07 4.9e-05 3 37 .. 298 332 .. 296 333 .. 0.83 Alignments for each domain: == domain 1 score: 32.8 bits; conditional E-value: 7.7e-10 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 q l+ l GH + +s+a+sp+ga++as++ D+tvr+W tr|S4RIF4|S4RIF4_PETMA 6 QVLHRLAGHqDRAWSVAWSPSGALIASCGGDKTVRVW 42 6789999**5559*************8877******* PP == domain 2 score: 14.6 bits; conditional E-value: 0.00044 ESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 8 tGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++H v+ +a+sp g+ las+s D t +W+ tr|S4RIF4|S4RIF4_PETMA 57 DAHqRTVRNVAWSPCGTRLASASFDATTCVWS 88 489555****************99*******5 PP == domain 3 score: 33.0 bits; conditional E-value: 6.8e-10 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 + tl+GH + v ++a+ p+g++la++s+D++v iW tr|S4RIF4|S4RIF4_PETMA 97 TATLEGHeNEVKGVAWAPSGNLLATCSRDKSVWIW 131 6799***999************************* PP == domain 4 score: 23.1 bits; conditional E-value: 9.6e-07 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 +c +l H ++v ++ ++p++ las+s+D+++r++ tr|S4RIF4|S4RIF4_PETMA 140 ECASVLNSHtQDVKHVVWHPNSEVLASASYDNSIRLY 176 67889999*999***********************98 PP == domain 5 score: 34.4 bits; conditional E-value: 2.6e-10 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 tl+GH s v+s++f+ g+ l+s++dD+t+riW tr|S4RIF4|S4RIF4_PETMA 186 FATLEGHeSTVWSIDFDATGRRLVSCGDDKTIRIW 220 6799***888************************* PP == domain 6 score: 17.2 bits; conditional E-value: 6.6e-05 TEEEEEEESS.SS.EEEEEEETTSSE......EEEEETTSEEEEE CS WD40 1 gqclrtltGH.ss.vtslafspdgaw......lasGsdDgtvriW 37 ++c+ tl+GH + ++++ +w +a++s D t+r++ tr|S4RIF4|S4RIF4_PETMA 240 WECVCTLSGHhTRvIYDV------SWckltgaIATASGDDTIRVF 278 68********66667***......77777777898877*****97 PP == domain 7 score: 23.6 bits; conditional E-value: 6.4e-07 EEEEEESS.SSEEEEEEETTSSEE.EEEETTSEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawl.asGsdDgtvriW 37 c+r+ +H +v+++a+sp+ + l as++dD+ v iW tr|S4RIF4|S4RIF4_PETMA 298 CVRK--AHdRDVNCVAWSPSDPGLlASCGDDRVVAIW 332 4554..9*666************736889******** PP >> tr|S4RJG5|S4RJG5_PETMA Transducin (beta)-like 3 OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.5 0.1 0.33 26 27 38 .] 8 19 .. 3 19 .. 0.85 2 ! 18.7 0.4 2.3e-05 0.0017 3 38 .] 25 63 .. 23 63 .. 0.83 3 ! 23.1 0.0 9e-07 7e-05 2 37 .. 68 104 .. 67 105 .. 0.95 4 ? 9.6 0.1 0.017 1.3 23 38 .] 144 158 .. 134 158 .. 0.84 5 ! 23.3 0.2 7.9e-07 6.1e-05 7 38 .] 274 306 .. 268 306 .. 0.88 6 ! 19.5 0.9 1.3e-05 0.001 3 38 .] 316 353 .. 311 353 .. 0.79 7 ! 32.4 0.1 1.1e-09 8.5e-08 5 37 .. 372 405 .. 368 405 .. 0.90 8 ? 1.3 0.0 7 5.4e+02 3 16 .. 423 437 .. 421 442 .. 0.84 9 ! 20.4 0.0 6.6e-06 0.00051 2 37 .. 446 482 .. 445 483 .. 0.80 10 ! 18.8 0.5 2.2e-05 0.0017 2 38 .] 488 525 .. 487 525 .. 0.92 Alignments for each domain: == domain 1 score: 5.5 bits; conditional E-value: 0.33 EEETTSEEEEEE CS WD40 27 sGsdDgtvriWd 38 +Gs D t+++Wd tr|S4RJG5|S4RJG5_PETMA 8 AGSSDATIKVWD 19 4777*******9 PP == domain 2 score: 18.7 bits; conditional E-value: 2.3e-05 EEEEEESSSSE.EEEEEETTSSE...EEEEETTSEEEEEE CS WD40 3 clrtltGHssv.tslafspdgaw...lasGsdDgtvriWd 38 c++ ++G s+v +af+pd + l+++s D+++r+Wd tr|S4RJG5|S4RJG5_PETMA 25 CTHNFRGSSGVvGVVAFHPDTSCprvLSAAS-DCKIRVWD 63 999*****88625555*********666668.*******9 PP == domain 3 score: 23.1 bits; conditional E-value: 9e-07 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 c tl+GH s vt+l+f dg+ l+s+++D v +W tr|S4RJG5|S4RJG5_PETMA 68 ACSATLDGHySAVTALRFACDGRTLLSAGRDSVVLLW 104 7999*****999************************* PP == domain 4 score: 9.6 bits; conditional E-value: 0.017 SEEEEEETTSEEEEEE CS WD40 23 awlasGsdDgtvriWd 38 +++++Gs +gt+r+Wd tr|S4RJG5|S4RJG5_PETMA 144 HFVTAGS-KGTLRVWD 158 4678899.*******9 PP == domain 5 score: 23.3 bits; conditional E-value: 7.9e-07 EESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 7 ltGHss.vtslafspdgawlasGsdDgtvriWd 38 l GH + v +l++s+ g++las+s+D+tvr+W+ tr|S4RJG5|S4RJG5_PETMA 274 LHGHRDmVLALDVSRRGTMLASSSKDRTVRVWS 306 569*556*************************5 PP == domain 6 score: 19.5 bits; conditional E-value: 1.3e-05 EEEEEESSSS.EEEEEEETTSSE.EEEEETTSEEEEEE CS WD40 3 clrtltGHss.vtslafspdgaw.lasGsdDgtvriWd 38 c+ + tGH + v ++a+s+ ++ l+sGs D+t+++Wd tr|S4RJG5|S4RJG5_PETMA 316 CVAVATGHAHaVGAVAWSRLKDGfLVSGSQDCTLKLWD 353 77777899445999966555555778***********9 PP == domain 7 score: 32.4 bits; conditional E-value: 1.1e-09 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvriW 37 t ++H ++v+s+a+sp+ +++asGs D+tvr+W tr|S4RJG5|S4RJG5_PETMA 372 FTEKAHdKDVNSVAVSPNDRLVASGSQDHTVRLW 405 45579*999************************* PP == domain 8 score: 1.3 bits; conditional E-value: 7 EEEEEESS.SSEEEE CS WD40 3 clrtltGH.ssvtsl 16 ++ +l+GH +v+s+ tr|S4RJG5|S4RJG5_PETMA 423 PVAVLRGHrRGVCSV 437 67899***8889999 PP == domain 9 score: 20.4 bits; conditional E-value: 6.6e-06 EEEEEEESS.SSEEEEEEETTSSEEE.EEETTSEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawla.sGsdDgtvriW 37 cl+t++GH sv + f g+ l+ sGs Dg v++W tr|S4RJG5|S4RJG5_PETMA 446 ACLKTFEGHdASVLKVVFVARGTQLLtSGS-DGLVKLW 482 69*******888999986666666652777.******* PP == domain 10 score: 18.8 bits; conditional E-value: 2.2e-05 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +c+rtl++H + v++l s+d +++G+ D + +W+ tr|S4RJG5|S4RJG5_PETMA 488 ECVRTLDAHdGKVWGLHGSRDDERVLTGGSDACIVLWK 525 7********555****************88*******6 PP >> tr|S4RD71|S4RD71_PETMA Uncharacterized protein OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.5 0.1 0.00024 0.018 6 38 .] 53 86 .. 51 86 .. 0.91 2 ? 7.9 0.0 0.059 4.6 3 32 .. 138 169 .. 136 171 .. 0.79 3 ! 25.7 0.0 1.4e-07 1.1e-05 4 38 .] 182 217 .. 179 217 .. 0.86 4 ! 31.5 0.2 2.1e-09 1.6e-07 4 38 .] 224 262 .. 221 262 .. 0.81 5 ! 13.8 0.4 0.00078 0.06 2 36 .. 311 348 .. 310 348 .. 0.84 6 ! 14.1 0.1 0.00063 0.049 8 36 .. 369 398 .. 363 400 .. 0.84 7 ? 4.4 0.0 0.75 58 16 37 .. 459 480 .. 449 481 .. 0.89 8 ! 16.8 0.0 8.8e-05 0.0068 7 37 .. 495 525 .. 491 526 .. 0.88 9 ! 27.2 0.2 4.7e-08 3.6e-06 5 37 .. 535 568 .. 531 569 .. 0.88 10 ? 10.0 0.6 0.013 0.97 8 37 .. 581 611 .. 574 612 .. 0.87 Alignments for each domain: == domain 1 score: 15.5 bits; conditional E-value: 0.00024 EEESSSSEEEEE.EETTSSEEEEEETTSEEEEEE CS WD40 6 tltGHssvtsla.fspdgawlasGsdDgtvriWd 38 ++t H + ts+a + p+g ++asG+ g+vriWd tr|S4RD71|S4RD71_PETMA 53 VYTEHAHFTSVAkYAPSGFYIASGDTSGKVRIWD 86 5778877999**************99*******9 PP == domain 2 score: 7.9 bits; conditional E-value: 0.059 EEEEEESSSS.EEEEEEETTSSE.EEEEETTS CS WD40 3 clrtltGHss.vtslafspdgaw.lasGsdDg 32 ++++ GHs ++s++ + ++ l++GsdD+ tr|S4RD71|S4RD71_PETMA 138 SVGEIVGHSKvINSVDIKQTRPYrLVTGSDDN 169 567788**5547***88888888999***997 PP == domain 3 score: 25.7 bits; conditional E-value: 1.4e-07 EEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 + t + Hs v+s++fsp+g+++a+++ Dg + i+d tr|S4RD71|S4RD71_PETMA 182 QFTTSDHSRfVNSVRFSPNGNFFATAGADGQIFIYD 217 5667789446**************9999******98 PP == domain 4 score: 31.5 bits; conditional E-value: 2.1e-09 EEEE...ESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtl...tGH.ssvtslafspdgawlasGsdDgtvriWd 38 + +l ++H ++++++++spd++ l+s+s D+tvr+Wd tr|S4RD71|S4RD71_PETMA 224 VSSLggeKAHdGGIYAVCWSPDSTQLMSASGDRTVRLWD 262 5566222589777*************99988*******9 PP == domain 5 score: 13.8 bits; conditional E-value: 0.00078 EEEEEEESS.SSEEEEE..EETTSSEEEEEETTSEEEE CS WD40 2 qclrtltGH.ssvtsla..fspdgawlasGsdDgtvri 36 +++r+++GH +s+ sl + + ++ + sGs+Dg++ i tr|S4RD71|S4RD71_PETMA 311 KPIRVIKGHsKSIQSLTthTGSGSPTIYSGSYDGHINI 348 789******999****877666666699*******986 PP == domain 6 score: 14.1 bits; conditional E-value: 0.00063 ESS.SSEEEEEEETTSSEEEEEETTSEEEE CS WD40 8 tGH.ssvtslafspdgawlasGsdDgtvri 36 GH + v+ l + p ++ l+s+s+D t+r+ tr|S4RD71|S4RD71_PETMA 369 HGHtNQVSKLVVEPKSNTLVSCSMDDTLRF 398 355666**********************97 PP == domain 7 score: 4.4 bits; conditional E-value: 0.75 EEEETTSSEEEEEETTSEEEEE CS WD40 16 lafspdgawlasGsdDgtvriW 37 +a ++dg +a G+ D +v+++ tr|S4RD71|S4RD71_PETMA 459 VAIHRDGVTVAVGGQDSKVHLY 480 56699**************998 PP == domain 8 score: 16.8 bits; conditional E-value: 8.8e-05 EESSSSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 7 ltGHssvtslafspdgawlasGsdDgtvriW 37 l+ H+ v ++afspdg++la G+ ++ v i+ tr|S4RD71|S4RD71_PETMA 495 LSVHGAVMDVAFSPDGTFLAVGDANKVVSIF 525 678978****************999999986 PP == domain 9 score: 27.2 bits; conditional E-value: 4.7e-08 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvriW 37 ++ GH v +la+spd++ las+++D v++W tr|S4RD71|S4RD71_PETMA 535 NSYYGHhAKVVCLAWSPDSHHLASSGMDMMVYVW 568 5789**66699************9999******* PP == domain 10 score: 10.0 bits; conditional E-value: 0.013 ESS..SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 8 tGH..ssvtslafspdgawlasGsdDgtvriW 37 + H ++v++l++ ++++++++++ D ++ W tr|S4RD71|S4RD71_PETMA 581 DCHrmNHVSGLSWLDEHTLVTTSH-DACIKQW 611 5788889************99989.******* PP >> tr|S4RI51|S4RI51_PETMA Sperm associated antigen 16 OS=Petromyzon marinus OX=7757 GN=SPAG16 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 12.7 0.0 0.0017 0.14 4 38 .] 328 363 .. 325 363 .. 0.92 2 ! 27.2 1.3 4.7e-08 3.6e-06 4 38 .] 370 405 .. 367 405 .. 0.89 3 ! 27.4 4.6 3.9e-08 3.1e-06 1 38 [] 409 447 .. 409 447 .. 0.93 4 ! 31.2 0.0 2.5e-09 2e-07 2 38 .] 452 489 .. 451 489 .. 0.95 5 ! 11.5 1.3 0.0043 0.33 1 38 [] 493 531 .. 493 531 .. 0.88 6 ? 9.3 0.0 0.021 1.6 13 37 .. 548 572 .. 538 573 .. 0.86 7 ! 34.5 0.1 2.3e-10 1.7e-08 5 37 .. 580 613 .. 577 614 .] 0.91 Alignments for each domain: == domain 1 score: 12.7 bits; conditional E-value: 0.0017 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +tl++H +v+s+a +p + ++++sdD+ ++W+ tr|S4RI51|S4RI51_PETMA 328 SQTLKAHeMPVSSMALHPRKEIIVTASDDQLWKMWS 363 5799***888*************************5 PP == domain 2 score: 27.2 bits; conditional E-value: 4.7e-08 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 + t GH +++ +++f+p g+ la+G+ D tv++Wd tr|S4RI51|S4RI51_PETMA 370 IMTGQGHtDWIGDCDFNPTGTNLATGGGDSTVKVWD 405 66788**777****************88*******9 PP == domain 3 score: 27.4 bits; conditional E-value: 3.9e-08 TEEEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 1 gqclrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 g c+ tl+GH++ v+++++++ g+++as+s+D++ ++Wd tr|S4RI51|S4RI51_PETMA 409 GACVLTLEGHGHaVWGCSWHSCGDFIASSSMDNSSKVWD 447 5799******556*************************9 PP == domain 4 score: 31.2 bits; conditional E-value: 2.5e-09 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +c +tl+GH +sv+s+ f p+++ l+++s D+t+ +Wd tr|S4RI51|S4RI51_PETMA 452 RCRQTLRGHtDSVNSVEFLPYSSTLLTSSADKTLSLWD 489 799******888****************99*******9 PP == domain 5 score: 11.5 bits; conditional E-value: 0.0043 TEEEEEEESSSSEEEEE...EETTSSEEEEEETTSEEEEEE CS WD40 1 gqclrtltGHssvtsla...fspdgawlasGsdDgtvriWd 38 g+c +++ GH +s+ f+ g+ ++s++ g +++Wd tr|S4RI51|S4RI51_PETMA 493 GRCAQIFYGH--LHSCNhgtFNLKGDTVVSCDSYGVIKVWD 531 579999****..888888889999999****66*******9 PP == domain 6 score: 9.3 bits; conditional E-value: 0.021 EEEEEEETTSSEEEEEETTSEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriW 37 + l+f+p+g+ +a +sdD vri tr|S4RI51|S4RI51_PETMA 548 ANRLSFHPSGHVMAVASDDACVRIV 572 5789**********99*******95 PP == domain 7 score: 34.5 bits; conditional E-value: 2.3e-10 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvriW 37 tl+GH + v ++ fspdg+ l+sG+ Dgt+r+W tr|S4RI51|S4RI51_PETMA 580 ETLSGHeDAVQAVVFSPDGDTLFSGGSDGTIRMW 613 689***777****************88******* PP >> tr|S4RB83|S4RB83_PETMA WD repeat domain 61 OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 10.3 0.1 0.01 0.77 9 38 .] 14 48 .. 4 48 .. 0.84 2 ! 25.1 0.0 2.1e-07 1.6e-05 2 38 .] 55 92 .. 54 92 .. 0.92 3 ! 11.6 0.1 0.0041 0.32 13 29 .. 107 125 .. 95 132 .. 0.81 4 ! 18.8 0.0 2.2e-05 0.0017 11 38 .] 149 176 .. 138 176 .. 0.84 5 ! 31.3 0.0 2.3e-09 1.8e-07 1 38 [] 180 223 .. 180 223 .. 0.89 6 ! 31.0 1.2 3e-09 2.3e-07 5 38 .] 231 265 .. 227 265 .. 0.92 7 ! 18.5 1.2 2.6e-05 0.002 2 38 .] 270 307 .. 269 307 .. 0.92 Alignments for each domain: == domain 1 score: 10.3 bits; conditional E-value: 0.01 SS.SSEEEEEEETTSSE..........EEEEETTSEEEEEE CS WD40 9 GH.ssvtslafspdgaw..........lasGsdDgtvriWd 38 +H + ++s+ aw +++Gs D v+ W+ tr|S4RB83|S4RB83_PETMA 14 AHeDAIWSV------AWgknekdgtdnIITGSVDDLVKCWK 48 89777****......77777777999999***********6 PP == domain 2 score: 25.1 bits; conditional E-value: 2.1e-07 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++++tl+GH +v s++ sp ga+ as+s D ++r+Wd tr|S4RB83|S4RB83_PETMA 55 ELQWTLEGHqLGVVSVDISPTGALAASSSLDANLRLWD 92 5789*****76699***********999*********9 PP == domain 3 score: 11.6 bits; conditional E-value: 0.0041 E..EEEEEETTSSEEEEEE CS WD40 13 v..tslafspdgawlasGs 29 v +s+afspd+++l++Gs tr|S4RB83|S4RB83_PETMA 107 VdaWSVAFSPDSRFLSTGS 125 5558**************8 PP == domain 4 score: 18.8 bits; conditional E-value: 2.2e-05 SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 11 ssvtslafspdgawlasGsdDgtvriWd 38 +++ sla+spdg+ lasG Dg + i+d tr|S4RB83|S4RB83_PETMA 149 KFILSLAYSPDGKHLASGAIDGIINIFD 176 5799**********************98 PP == domain 5 score: 31.3 bits; conditional E-value: 2.3e-09 TEEEEEEE.....SS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 1 gqclrtlt.....GH.ssvtslafspdgawlasGsdDgtvriWd 38 g++l+tl+ GH +++sl fspd+++l+++sdDg ++i+d tr|S4RB83|S4RB83_PETMA 180 GKLLHTLEawargGHaMPIRSLTFSPDSQLLITASDDGYIKIYD 223 57899997666779*888*************************8 PP == domain 6 score: 31.0 bits; conditional E-value: 3e-09 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 tl+GH s+v ++f+pd++ ++s+s D++v++Wd tr|S4RB83|S4RB83_PETMA 231 ATLSGHaSWVLNVSFCPDNTHFVSSSSDKSVKVWD 265 689***999*************99877*******9 PP == domain 7 score: 18.5 bits; conditional E-value: 2.6e-05 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +c++t+ H + v+++++++ g+ ++s sdD+ v+i+d tr|S4RB83|S4RB83_PETMA 270 TCVHTFFDHqDQVWGVKYNSTGSKIVSVSDDRAVHIYD 307 79***999*666**************99********98 PP >> tr|S4RS47|S4RS47_PETMA Pleiotropic regulator 1 OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 34.0 0.2 3.5e-10 2.7e-08 2 37 .. 204 240 .. 203 241 .. 0.93 2 ! 27.2 0.1 4.6e-08 3.6e-06 2 38 .] 246 283 .. 245 283 .. 0.93 3 ! 17.5 0.2 5.4e-05 0.0042 2 38 .] 288 325 .. 287 325 .. 0.92 4 ! 26.3 0.2 9.4e-08 7.3e-06 3 38 .] 331 367 .. 329 367 .. 0.79 5 ? 5.7 0.0 0.28 22 5 37 .. 375 407 .. 371 408 .. 0.86 6 ! 23.8 0.2 5.8e-07 4.5e-05 5 38 .] 416 449 .. 412 449 .. 0.89 7 ? 8.1 0.0 0.052 4 11 37 .. 472 498 .. 463 499 .. 0.85 Alignments for each domain: == domain 1 score: 34.0 bits; conditional E-value: 3.5e-10 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 ++ r+++GH ++v+s+a+ p ++w+++Gs D+t++iW tr|S4RS47|S4RS47_PETMA 204 KLYRVISGHlGWVRSIAVEPGNQWFVTGSADRTIKIW 240 6678999****************************** PP == domain 2 score: 27.2 bits; conditional E-value: 4.6e-08 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++ +ltGH s v+++a+s+ +++l+s+++D+ ++ Wd tr|S4RS47|S4RS47_PETMA 246 KLKLSLTGHiSTVRGVAVSSRSPYLFSCGEDKQIKCWD 283 566799*******************************9 PP == domain 3 score: 17.5 bits; conditional E-value: 5.4e-05 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 + +r++ GH s ++l+ +p + l+++++D t r+Wd tr|S4RS47|S4RS47_PETMA 288 KVIRHYHGHlSAAYALDLHPTIDVLVTCGRDATARVWD 325 5689*****999999999999999*************9 PP == domain 4 score: 26.3 bits; conditional E-value: 9.4e-08 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +++tltGH + v +++ + + +++Gs D+tvr+Wd tr|S4RS47|S4RS47_PETMA 331 NVHTLTGHtNTVADVKCQAVEPQIITGSHDCTVRLWD 367 79******88866665444455599**99*******9 PP == domain 5 score: 5.7 bits; conditional E-value: 0.28 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvriW 37 tlt H +sv+s+ +p + +as+s +++ W tr|S4RS47|S4RS47_PETMA 375 VTLTNHkKSVRSVVLHPRQYTFASAS-PDNIKQW 407 57999*999********999999999.8888888 PP == domain 6 score: 23.8 bits; conditional E-value: 5.8e-07 EEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 5 rtltGHss.vtslafspdgawlasGsdDgtvriWd 38 + l+GH+ +++la ++dg ++ sG d+gt ++Wd tr|S4RS47|S4RS47_PETMA 416 QNLSGHNAiINCLALNSDGVLV-SGADNGTMHLWD 449 6799**7757***********7.8*9********9 PP == domain 7 score: 8.1 bits; conditional E-value: 0.052 SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 11 ssvtslafspdgawlasGsdDgtvriW 37 s++ ++af+++ + l+++ D+t++++ tr|S4RS47|S4RS47_PETMA 472 SGIFACAFDHSESRLITAEADKTIKLY 498 45999*************77*****98 PP >> tr|S4RVN2|S4RVN2_PETMA Striatin, calmodulin binding protein 4 OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.1 0.1 5.7e-09 4.4e-07 1 38 [] 223 261 .. 223 261 .. 0.93 2 ! 20.5 0.0 6.3e-06 0.00049 2 38 .] 277 314 .. 276 314 .. 0.94 3 ! 25.8 0.2 1.3e-07 9.7e-06 5 38 .] 333 367 .. 330 367 .. 0.89 4 ? 4.9 0.0 0.53 41 12 38 .] 437 463 .. 426 463 .. 0.83 5 ! 36.6 0.1 5e-11 3.9e-09 1 38 [] 469 507 .. 469 507 .. 0.96 6 ! 17.7 0.0 4.9e-05 0.0038 2 32 .. 512 547 .. 511 552 .. 0.85 Alignments for each domain: == domain 1 score: 30.1 bits; conditional E-value: 5.7e-09 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +++ tl+ H ++v++laf+p+ + l+++s+D+t+++W+ tr|S4RVN2|S4RVN2_PETMA 223 WNPKFTLRSHfDGVRALAFHPSEHVLVTASEDHTLKLWN 261 578899****777*************************8 PP == domain 2 score: 20.5 bits; conditional E-value: 6.3e-06 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++++t+++H ++v sla s +g +sG+ D ++r W+ tr|S4RVN2|S4RVN2_PETMA 277 EPIYTFRAHtGPVLSLAISTSGEQCFSGGTDASIRCWN 314 5899*****888************99**99*******8 PP == domain 3 score: 25.8 bits; conditional E-value: 1.3e-07 EEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 5 rtltGHss.vtslafspdgawlasGsdDgtvriWd 38 +tl GHs+ v++la+s+ + l+s+s Dgtvr+Wd tr|S4RVN2|S4RVN2_PETMA 333 QTLLGHSDaVWGLAYSSLRRRLLSCSADGTVRLWD 367 6788**555****99999999*************9 PP == domain 4 score: 4.9 bits; conditional E-value: 0.53 SEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 12 svtslafspdgawlasGsdDgtvriWd 38 ++ + +p + +++++D++++++d tr|S4RVN2|S4RVN2_PETMA 437 QINRVVSHPTLPITVTAHEDRHIKFFD 463 4788888888888789********998 PP == domain 5 score: 36.6 bits; conditional E-value: 5e-11 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 g+++++ +H + vt+la++p+g +l+sGs D+++r+W+ tr|S4RVN2|S4RVN2_PETMA 469 GKQVHSMVAHlDAVTCLAVDPNGLYLMSGSHDCSIRLWN 507 67899*****999****************99*******8 PP == domain 6 score: 17.7 bits; conditional E-value: 4.9e-05 EEEEEEESS..SS...EEEEEEETTSSEEEEEETTS CS WD40 2 qclrtltGH..ss...vtslafspdgawlasGsdDg 32 +c++++t+H ++ ++++af+p++a++as++ D tr|S4RVN2|S4RVN2_PETMA 512 TCVQEITAHrkKFdeaIHDVAFHPSKAFIASAGADA 547 6999*****964489***************998886 PP >> tr|S4RMK2|S4RMK2_PETMA Uncharacterized protein OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.3 0.0 0.39 30 3 28 .. 416 442 .. 415 454 .. 0.77 2 ! 13.6 0.6 0.00093 0.072 1 38 [] 458 500 .. 458 500 .. 0.83 3 ? 2.8 0.2 2.5 1.9e+02 16 37 .. 525 546 .. 510 547 .. 0.65 4 ? 6.7 0.1 0.14 11 21 37 .. 640 656 .. 625 656 .. 0.77 5 ? 7.8 0.1 0.064 5 8 38 .] 712 743 .. 704 743 .. 0.77 6 ? 3.5 0.1 1.5 1.2e+02 9 35 .. 765 782 .. 754 785 .. 0.74 7 ? 7.1 0.0 0.11 8.3 7 29 .. 795 818 .. 790 831 .. 0.76 8 ! 18.9 0.1 2e-05 0.0015 2 38 .] 937 974 .. 936 974 .. 0.80 9 ? 3.7 0.1 1.3 1e+02 5 36 .. 984 1014 .. 981 1016 .. 0.76 10 ? 9.8 0.1 0.015 1.2 4 38 .] 1241 1275 .. 1239 1275 .. 0.91 11 ! 12.3 0.1 0.0023 0.18 8 37 .. 1286 1318 .. 1279 1318 .. 0.82 12 ! 30.3 0.0 4.9e-09 3.8e-07 5 38 .] 1516 1550 .. 1512 1550 .. 0.89 13 ? 2.4 0.0 3.3 2.5e+02 19 37 .. 1580 1598 .. 1562 1599 .. 0.71 14 ? 8.2 0.0 0.049 3.8 7 35 .. 1609 1639 .. 1604 1640 .. 0.76 15 ? 5.9 0.2 0.25 19 5 38 .] 1650 1695 .. 1646 1695 .. 0.73 16 ? 9.3 0.0 0.021 1.6 9 37 .. 1809 1837 .. 1802 1838 .. 0.86 Alignments for each domain: == domain 1 score: 5.3 bits; conditional E-value: 0.39 EEEEEESSSS.EEEEEEETTSSEEEEE CS WD40 3 clrtltGHss.vtslafspdgawlasG 28 ++r ltGHs+ vt+l + +++las+ tr|S4RMK2|S4RMK2_PETMA 416 NQRFLTGHSDkVTALTMNGASTLLASA 442 57899***666****999999999875 PP == domain 2 score: 13.6 bits; conditional E-value: 0.00093 TEEEEEEESS.SSEEEEEEETTSSEEEEE.....ETTSEEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgawlasG.....sdDgtvriWd 38 g+cl ++t H +sl+fs++ga l+ G ++++tv +Wd tr|S4RMK2|S4RMK2_PETMA 458 GECLSVFTPHlHALSSLSFSHSGAVLC-GvgkdsHEKNTVVVWD 500 68********77799999*******95.65354346*******9 PP == domain 3 score: 2.8 bits; conditional E-value: 2.5 EE.EETTSSEEEEEETTSEEEEE CS WD40 16 la.fspdgawlasGsdDgtvriW 37 ++ s d + ++s++ g+vr+W tr|S4RMK2|S4RMK2_PETMA 525 IKiASFDDTRMVSCG-RGSVRLW 546 33544555566799*.******* PP == domain 4 score: 6.7 bits; conditional E-value: 0.14 TSSEEEEEETTSEEEEE CS WD40 21 dgawlasGsdDgtvriW 37 + + a+GsdDg +r+W tr|S4RMK2|S4RMK2_PETMA 640 SEGLCATGSDDGFLRLW 656 444579*********** PP == domain 5 score: 7.8 bits; conditional E-value: 0.064 ESS.SSEEEEEEETTSSE..EEEEETTSEEEEEE CS WD40 8 tGH.ssvtslafspdgaw..lasGsdDgtvriWd 38 + H ++v ++ s dga l++ ++D +vr+Wd tr|S4RMK2|S4RMK2_PETMA 712 RSHaGPVLGC--SADGARrhLVTVGRDASVRVWD 743 4787789999..55555555888888*******9 PP == domain 6 score: 3.5 bits; conditional E-value: 1.5 SSSSEEEEEEETTSSEEEEE.ETTSEEE CS WD40 9 GHssvtslafspdgawlasG.sdDgtvr 35 +p ++la+G s Dg++r tr|S4RMK2|S4RMK2_PETMA 765 C---------HPVRQLLACGfS-DGSLR 782 3.........555555****55.***98 PP == domain 7 score: 7.1 bits; conditional E-value: 0.11 EESS.SSEEEEEEETTSSEEEEEE CS WD40 7 ltGH.ssvtslafspdgawlasGs 29 + H + +t+lafs++g ++ s++ tr|S4RMK2|S4RMK2_PETMA 795 HKQHrGQITALAFSRSGEFMYSAC 818 4567666************98653 PP == domain 8 score: 18.9 bits; conditional E-value: 2e-05 EEEEEEE.SS.SS.E.EEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtlt.GH.ss.v.tslafspdgawlasGsdDgtvriWd 38 ++lr+l+ +H + v t++ s dg+++a+++ D+ v++Wd tr|S4RMK2|S4RMK2_PETMA 937 RNLRELSaAHhTRcVsTDV--SEDGRFFATAG-DRVVKVWD 974 6888998767433576666..***********.*******9 PP == domain 9 score: 3.7 bits; conditional E-value: 1.3 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvri 36 +t+ GH sv+++ f pd+ l+s + i tr|S4RMK2|S4RMK2_PETMA 984 QTFIGHsESVRHVMFTPDQLGLVSV--GDAILI 1014 6899**777****999999988754..444455 PP == domain 10 score: 9.8 bits; conditional E-value: 0.015 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +r+l GH ++ la s+d + l+s+s g +Wd tr|S4RMK2|S4RMK2_PETMA 1241 QRHLLGHqREISTLAISHDAQTLVSAS-CGQMCMWD 1275 68999**555*****************.99999998 PP == domain 11 score: 12.3 bits; conditional E-value: 0.0023 ESS.SSEEEEEEETTSSEEEE.E.ETTSEEEEE CS WD40 8 tGH.ssvtslafspdgawlas.G.sdDgtvriW 37 + H ++v +lafs+d ++l+s G ++Dg++ +W tr|S4RMK2|S4RMK2_PETMA 1286 SHHrGDVQALAFSRDDRFLLSlGdGRDGSLALW 1318 567889*************9865567****999 PP == domain 12 score: 30.3 bits; conditional E-value: 4.9e-09 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 r +GH vt+lafspd a++as+ Dg++r+Wd tr|S4RMK2|S4RMK2_PETMA 1516 RLVSGHaEQVTGLAFSPDEALFASSAADGSLRVWD 1550 5578**777**************9988*******9 PP == domain 13 score: 2.4 bits; conditional E-value: 3.3 ETTSSEEEEEETTSEEEEE CS WD40 19 spdgawlasGsdDgtvriW 37 s+ ++++a+G Dg vr++ tr|S4RMK2|S4RMK2_PETMA 1580 SRFSRLVAAGYGDGAVRLF 1598 445566999955*****97 PP == domain 14 score: 8.2 bits; conditional E-value: 0.049 EESS.SSEEEEEEETTSSE.EEEEETTSEEE CS WD40 7 ltGH.ssvtslafspdgaw.lasGsdDgtvr 35 + H s vt+lafs d l+sG +Dg v tr|S4RMK2|S4RMK2_PETMA 1609 MRSHgSAVTALAFSTDAGEfLVSGARDGLVV 1639 578*777*****77766663789999*9886 PP == domain 15 score: 5.9 bits; conditional E-value: 0.25 EEEESS..SSEEEEE...........EETTSSEEEEEETTSEEEEEE CS WD40 5 rtltGH..ssvtsla...........fspdgawlasGsdDgtvriWd 38 r+ t H s++++++ + wla +s+D v iW+ tr|S4RMK2|S4RMK2_PETMA 1650 RVVTDHrpSPISAIDcvhsqerlvigSHGGEMWLA-ASRDSRVSIWS 1695 56677877776666666677788887777777787.677*******5 PP == domain 16 score: 9.3 bits; conditional E-value: 0.021 SS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 9 GH.ssvtslafspdgawlasGsdDgtvriW 37 GH + v++++fsp+g+ l+++ g + +W tr|S4RMK2|S4RMK2_PETMA 1809 GHeDAVRACRFSPSGRRLFTAA-HGAIFVW 1837 9*777**************999.9999999 PP >> tr|S4RVX9|S4RVX9_PETMA WD repeat domain 90 OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.3 0.1 0.00013 0.01 3 38 .] 418 456 .. 416 456 .. 0.87 2 ? 7.9 1.2 0.057 4.4 1 38 [] 460 502 .. 460 502 .. 0.78 3 ! 11.8 0.2 0.0034 0.26 23 38 .] 646 662 .. 638 662 .. 0.83 4 ? 4.1 0.0 0.92 71 1 38 [] 749 787 .. 749 787 .. 0.83 5 ? 7.3 0.0 0.089 6.9 8 29 .. 798 820 .. 792 829 .. 0.80 6 ? 3.4 0.0 1.5 1.2e+02 14 38 .] 947 970 .. 934 970 .. 0.82 7 ? 4.4 0.0 0.77 59 5 38 .] 978 1010 .. 974 1010 .. 0.79 8 ? 8.6 0.1 0.036 2.7 4 38 .] 1233 1273 .. 1231 1273 .. 0.79 9 ? 8.1 0.0 0.051 4 1 38 [] 1277 1317 .. 1277 1317 .. 0.80 10 ? 4.7 0.8 0.62 48 12 37 .. 1424 1447 .. 1412 1448 .. 0.74 11 ! 33.4 0.1 5e-10 3.9e-08 2 38 .] 1514 1551 .. 1513 1551 .. 0.94 12 ? 8.2 0.0 0.049 3.8 12 37 .. 1567 1595 .. 1561 1595 .. 0.87 13 ! 17.5 0.0 5.5e-05 0.0042 3 34 .. 1602 1634 .. 1600 1636 .. 0.90 14 ? 7.1 0.0 0.11 8.4 5 38 .] 1646 1689 .. 1642 1689 .. 0.70 15 ? 3.4 0.0 1.5 1.2e+02 9 31 .. 1761 1781 .. 1748 1786 .. 0.81 Alignments for each domain: == domain 1 score: 16.3 bits; conditional E-value: 0.00013 EEEEEESSSS.EEEEEEETTSSEEEEE..ETTSEEEEEE CS WD40 3 clrtltGHss.vtslafspdgawlasG..sdDgtvriWd 38 ++ ltGHs+ v++laf+ + lasG + vriW+ tr|S4RVX9|S4RVX9_PETMA 418 SQHFLTGHSDkVSALAFDGNTEILASGqsGPQAIVRIWN 456 57899***666**************998445*******8 PP == domain 2 score: 7.9 bits; conditional E-value: 0.057 TEEEEEEESS.SSEEEEEEETTSSEEEEE.ET....TSEEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgawlasG.sd....DgtvriWd 38 g+cl +++H s sl+fs +g+ l sG ++ + v +Wd tr|S4RVX9|S4RVX9_PETMA 460 GSCLAMFKTHaHSLFSLSFSWSGDVL-SGvGRdshgKTMVVVWD 502 6899****99666************8.67644244488888887 PP == domain 3 score: 11.8 bits; conditional E-value: 0.0034 SEE.EEEETTSEEEEEE CS WD40 23 awl.asGsdDgtvriWd 38 +w+ ++Gs+Dgtvr+W+ tr|S4RVX9|S4RVX9_PETMA 646 RWFcVTGSEDGTVRVWS 662 676359**********5 PP == domain 4 score: 4.1 bits; conditional E-value: 0.92 TEEEEEEESS.SSEEEEEEETTSSEEEEE.ETTSEEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgawlasG.sdDgtvriWd 38 gq+l++++G +s + ++ +p +a+G s g+vr++d tr|S4RVX9|S4RVX9_PETMA 749 GQQLYEFSGAeDSACTVSCHPQLERFACGfS-SGSVRVFD 787 68899999998776777778888889*9*55.******98 PP == domain 5 score: 7.3 bits; conditional E-value: 0.089 ESS.SSEEEEEEETTSSEEEEEE CS WD40 8 tGH.ssvtslafspdgawlasGs 29 + H + +t+l fsp+g + s++ tr|S4RVX9|S4RVX9_PETMA 798 RQHrGEITGLEFSPNGEHMYSCD 820 568777************99985 PP == domain 6 score: 3.4 bits; conditional E-value: 1.5 EEEEEETTSSEEEEEETTSEEEEEE CS WD40 14 tslafspdgawlasGsdDgtvriWd 38 ++l++s dga +a +s D t+r Wd tr|S4RVX9|S4RVX9_PETMA 947 SALQVSEDGAIVAMAS-DATLRAWD 970 57779*******989*.*******9 PP == domain 7 score: 4.4 bits; conditional E-value: 0.77 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 + + GH + v+ l+f + l+s + gt+ +Wd tr|S4RVX9|S4RVX9_PETMA 978 QAFVGHsQEVRRLRFTGRCPGLVS-G-GGTIFMWD 1010 6689**666****77777777995.6.9******9 PP == domain 8 score: 8.6 bits; conditional E-value: 0.036 EEEEESS.SSEEEEEEETTSSEEEEEE..T...TSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGs..d...DgtvriWd 38 +r+l +H ++ la s+d las+s + + +Wd tr|S4RVX9|S4RVX9_PETMA 1233 QRHLQAHtEEISTLASSHDAEVLASASggRgdtGSQICVWD 1273 799****666*************964322244599999998 PP == domain 9 score: 8.1 bits; conditional E-value: 0.051 TEEEEEEESS.SSEEEEEEETTSSEEEEEET..TSEEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgawlasGsd..DgtvriWd 38 g+c r+l+ H v ++afs d++ l+s +d v +Wd tr|S4RVX9|S4RVX9_PETMA 1277 GSCERVLSRHrHEVQAMAFSADNSVLLSVGDyrEMMVVLWD 1317 68999***9*666************9986643377777787 PP == domain 10 score: 4.7 bits; conditional E-value: 0.62 S..EEEEEEETTSSEEEEEETTSEEEEE CS WD40 12 s..vtslafspdgawlasGsdDgtvriW 37 + v ++ +g+ l+sGs + +r+W tr|S4RVX9|S4RVX9_PETMA 1424 DigVLCC----HGNRLLSGSSSKRIRLW 1447 3557788....899999**99******* PP == domain 11 score: 33.4 bits; conditional E-value: 5e-10 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 c+r +GH + v+++afspdg+ l+sGs+Dg +r+W+ tr|S4RVX9|S4RVX9_PETMA 1514 ACVRLVSGHrGKVNDIAFSPDGSQLVSGSEDGLLRVWS 1551 699999***888*************************5 PP == domain 12 score: 8.2 bits; conditional E-value: 0.049 SEEEEEEETTSSE...EEEE.ETTSEEEEE CS WD40 12 svtslafspdgaw...lasG.sdDgtvriW 37 s t++a+ p+ga +a+G + Dgt+r++ tr|S4RVX9|S4RVX9_PETMA 1567 SCTCVAWRPSGAApsqVAAGfG-DGTLRLF 1595 579**99999999*******55.*****85 PP == domain 13 score: 17.5 bits; conditional E-value: 5.5e-05 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtv 34 +l++l H ++++afs+dg +++G+ Dg v tr|S4RVX9|S4RVX9_PETMA 1602 TLHKLQPHgAAIRCVAFSSDGEVMLTGGADGRV 1634 6899999*666*****************9**87 PP == domain 14 score: 7.1 bits; conditional E-value: 0.11 EEEESS.SS.EEEEE.......EETTSSE..EEEEETTSEEEEEE CS WD40 5 rtltGH.ss.vtsla.......fspdgaw..lasGsdDgtvriWd 38 r l+ H ss ++sl+ sp+g+ la +s D+ + iW+ tr|S4RVX9|S4RVX9_PETMA 1646 RMLSQHsSSpICSLQcapahqqGSPEGRDlwLA-ASLDRRISIWK 1689 678899733699999888888844444443366.677*******6 PP == domain 15 score: 3.4 bits; conditional E-value: 1.5 SSSSEEEEEEETTSSEEEEEETT CS WD40 9 GHssvtslafspdgawlasGsdD 31 GH t+l+ p+g+ la Gs tr|S4RVX9|S4RVX9_PETMA 1761 GH--TTCLSLAPSGDHLAIGSTE 1781 77..69************99965 PP >> tr|S4RVZ0|S4RVZ0_PETMA WD repeat domain 90 OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.4 0.1 0.00013 0.0097 3 38 .] 403 441 .. 401 441 .. 0.87 2 ? 8.0 1.2 0.054 4.2 1 38 [] 445 487 .. 445 487 .. 0.78 3 ! 11.9 0.2 0.0032 0.25 23 38 .] 628 644 .. 620 644 .. 0.83 4 ? 4.2 0.0 0.86 67 1 38 [] 731 769 .. 731 769 .. 0.83 5 ? 7.4 0.0 0.084 6.5 8 29 .. 780 802 .. 774 811 .. 0.80 6 ? 3.5 0.0 1.4 1.1e+02 14 38 .] 929 952 .. 916 952 .. 0.82 7 ? 5.1 0.0 0.47 36 2 38 .] 960 995 .. 959 995 .. 0.80 8 ? 8.7 0.1 0.033 2.6 4 38 .] 1139 1179 .. 1137 1179 .. 0.79 9 ? 8.2 0.0 0.048 3.7 1 38 [] 1183 1223 .. 1183 1223 .. 0.80 10 ? 4.7 0.8 0.59 45 12 37 .. 1330 1353 .. 1318 1354 .. 0.74 11 ! 33.5 0.1 4.7e-10 3.6e-08 2 38 .] 1414 1451 .. 1413 1451 .. 0.94 12 ? 8.2 0.0 0.046 3.6 12 37 .. 1467 1495 .. 1461 1495 .. 0.87 13 ! 17.6 0.0 5.2e-05 0.004 3 34 .. 1502 1534 .. 1500 1536 .. 0.90 14 ? 6.6 0.0 0.15 12 5 38 .] 1546 1593 .. 1542 1593 .. 0.65 15 ? 3.4 0.0 1.6 1.2e+02 9 31 .. 1664 1684 .. 1655 1689 .. 0.81 Alignments for each domain: == domain 1 score: 16.4 bits; conditional E-value: 0.00013 EEEEEESSSS.EEEEEEETTSSEEEEE..ETTSEEEEEE CS WD40 3 clrtltGHss.vtslafspdgawlasG..sdDgtvriWd 38 ++ ltGHs+ v++laf+ + lasG + vriW+ tr|S4RVZ0|S4RVZ0_PETMA 403 SQHFLTGHSDkVSALAFDGNTEILASGqsGPQAIVRIWN 441 57899***666**************998445*******8 PP == domain 2 score: 8.0 bits; conditional E-value: 0.054 TEEEEEEESS.SSEEEEEEETTSSEEEEE.ET....TSEEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgawlasG.sd....DgtvriWd 38 g+cl +++H s sl+fs +g+ l sG ++ + v +Wd tr|S4RVZ0|S4RVZ0_PETMA 445 GSCLAMFKTHaHSLFSLSFSWSGDVL-SGvGRdshgKTMVVVWD 487 6899****99666************8.67644244488888887 PP == domain 3 score: 11.9 bits; conditional E-value: 0.0032 SEE.EEEETTSEEEEEE CS WD40 23 awl.asGsdDgtvriWd 38 +w+ ++Gs+Dgtvr+W+ tr|S4RVZ0|S4RVZ0_PETMA 628 RWFcVTGSEDGTVRVWS 644 676359**********5 PP == domain 4 score: 4.2 bits; conditional E-value: 0.86 TEEEEEEESS.SSEEEEEEETTSSEEEEE.ETTSEEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgawlasG.sdDgtvriWd 38 gq+l++++G +s + ++ +p +a+G s g+vr++d tr|S4RVZ0|S4RVZ0_PETMA 731 GQQLYEFSGAeDSACTVSCHPQLERFACGfS-SGSVRVFD 769 68899999998776777778888889*9*55.******98 PP == domain 5 score: 7.4 bits; conditional E-value: 0.084 ESS.SSEEEEEEETTSSEEEEEE CS WD40 8 tGH.ssvtslafspdgawlasGs 29 + H + +t+l fsp+g + s++ tr|S4RVZ0|S4RVZ0_PETMA 780 RQHrGEITGLEFSPNGEHMYSCD 802 568777************99985 PP == domain 6 score: 3.5 bits; conditional E-value: 1.4 EEEEEETTSSEEEEEETTSEEEEEE CS WD40 14 tslafspdgawlasGsdDgtvriWd 38 ++l++s dga +a +s D t+r Wd tr|S4RVZ0|S4RVZ0_PETMA 929 SALQVSEDGAIVAMAS-DATLRAWD 952 57779*******989*.*******9 PP == domain 7 score: 5.1 bits; conditional E-value: 0.47 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 q+ + + GH + v+ l+f + l+s + gt+ +Wd tr|S4RVZ0|S4RVZ0_PETMA 960 QPSQAFVGHsQEVRRLRFTGRCPGLVS-G-GGTIFMWD 995 5677899**666****77777777995.6.9******9 PP == domain 8 score: 8.7 bits; conditional E-value: 0.033 EEEEESS.SSEEEEEEETTSSEEEEEE..T...TSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGs..d...DgtvriWd 38 +r+l +H ++ la s+d las+s + + +Wd tr|S4RVZ0|S4RVZ0_PETMA 1139 QRHLQAHtEEISTLASSHDAEVLASASggRgdtGSQICVWD 1179 799****666*************964322244599999998 PP == domain 9 score: 8.2 bits; conditional E-value: 0.048 TEEEEEEESS.SSEEEEEEETTSSEEEEEET..TSEEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgawlasGsd..DgtvriWd 38 g+c r+l+ H v ++afs d++ l+s +d v +Wd tr|S4RVZ0|S4RVZ0_PETMA 1183 GSCERVLSRHrHEVQAMAFSADNSVLLSVGDyrEMMVVLWD 1223 68999***9*666************9986643377777787 PP == domain 10 score: 4.7 bits; conditional E-value: 0.59 S..EEEEEEETTSSEEEEEETTSEEEEE CS WD40 12 s..vtslafspdgawlasGsdDgtvriW 37 + v ++ +g+ l+sGs + +r+W tr|S4RVZ0|S4RVZ0_PETMA 1330 DigVLCC----HGNRLLSGSSSKRIRLW 1353 3557788....899999**99******* PP == domain 11 score: 33.5 bits; conditional E-value: 4.7e-10 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 c+r +GH + v+++afspdg+ l+sGs+Dg +r+W+ tr|S4RVZ0|S4RVZ0_PETMA 1414 ACVRLVSGHrGKVNDIAFSPDGSQLVSGSEDGLLRVWS 1451 699999***888*************************5 PP == domain 12 score: 8.2 bits; conditional E-value: 0.046 SEEEEEEETTSSE...EEEE.ETTSEEEEE CS WD40 12 svtslafspdgaw...lasG.sdDgtvriW 37 s t++a+ p+ga +a+G + Dgt+r++ tr|S4RVZ0|S4RVZ0_PETMA 1467 SCTCVAWRPSGAApsqVAAGfG-DGTLRLF 1495 579**99999999*******55.*****85 PP == domain 13 score: 17.6 bits; conditional E-value: 5.2e-05 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtv 34 +l++l H ++++afs+dg +++G+ Dg v tr|S4RVZ0|S4RVZ0_PETMA 1502 TLHKLQPHgAAIRCVAFSSDGEVMLTGGADGRV 1534 6899999*666*****************9**87 PP == domain 14 score: 6.6 bits; conditional E-value: 0.15 EEEESS.SS.EEEEE...........EETTSSE..EEEEETTSEEEEEE CS WD40 5 rtltGH.ss.vtsla...........fspdgaw..lasGsdDgtvriWd 38 r l+ H ss ++sl+ sp+g+ la +s D+ + iW+ tr|S4RVZ0|S4RVZ0_PETMA 1546 RMLSQHsSSpICSLQcapahrcrcqqGSPEGRDlwLA-ASLDRRISIWK 1593 5677886335887776666666666655555553366.677*******6 PP == domain 15 score: 3.4 bits; conditional E-value: 1.6 SSSSEEEEEEETTSSEEEEEETT CS WD40 9 GHssvtslafspdgawlasGsdD 31 GH t+l+ p+g+ la Gs tr|S4RVZ0|S4RVZ0_PETMA 1664 GH--TTCLSLAPSGDHLAIGSTE 1684 78..69************99965 PP >> tr|S4RZZ2|S4RZZ2_PETMA Cleavage stimulation factor, 3' pre-RNA, subunit 1 OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 13.8 0.0 0.0008 0.062 8 36 .. 107 136 .. 100 138 .. 0.86 2 ! 27.7 0.0 3.3e-08 2.5e-06 4 38 .] 170 205 .. 168 205 .. 0.92 3 ! 12.8 0.0 0.0016 0.13 13 38 .] 223 249 .. 213 249 .. 0.89 4 ! 22.9 0.1 1.1e-06 8.5e-05 9 38 .] 264 294 .. 257 294 .. 0.90 5 ! 24.9 0.0 2.5e-07 1.9e-05 2 37 .. 299 337 .. 298 338 .. 0.88 6 ! 17.5 0.1 5.4e-05 0.0042 2 37 .. 393 428 .. 392 428 .. 0.90 Alignments for each domain: == domain 1 score: 13.8 bits; conditional E-value: 0.0008 ESS.SSEEEEEEETTSSEEEEEETTSEEEE CS WD40 8 tGH.ssvtslafspdgawlasGsdDgtvri 36 t H ++ +s +s+dg+++a+Gs D +++i tr|S4RZZ2|S4RZZ2_PETMA 107 TSHkGPCRSATYSRDGQLIATGSADASIKI 136 57866689999******************9 PP == domain 2 score: 27.7 bits; conditional E-value: 3.3e-08 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +rtl H + vt+laf+p + lasGs+D +++++d tr|S4RZZ2|S4RZZ2_PETMA 170 IRTLYDHtDEVTCLAFHPTEQILASGSRDYSLKLFD 205 689999*666************************98 PP == domain 3 score: 12.8 bits; conditional E-value: 0.0016 E.EEEEEETTSSEEEEEETTSEEEEEE CS WD40 13 v.tslafspdgawlasGsdDgtvriWd 38 v ++laf+p g++l+ G++ +t+r++d tr|S4RZZ2|S4RZZ2_PETMA 223 VlRCLAFHPAGDFLLVGTRHPTLRMYD 249 559**********************98 PP == domain 4 score: 22.9 bits; conditional E-value: 1.1e-06 SS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 9 GH.ssvtslafspdgawlasGsdDgtvriWd 38 H + vt++a++p + +s+s+Dgt+++Wd tr|S4RZZ2|S4RZZ2_PETMA 264 QHtDAVTGVAYNPTANSYVSCSRDGTIKLWD 294 58555*****9999999889**********9 PP == domain 5 score: 24.9 bits; conditional E-value: 2.5e-07 EEEEEEE.SS..SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 2 qclrtlt.GH..ssvtslafspdgawlasGsdDgtvriW 37 +c+ t++ +H +v+s+ fs++ ++++s+++D vr+W tr|S4RZZ2|S4RZZ2_PETMA 299 RCVATYDrAHggAPVCSVVFSRNAKYVLSSGKDSMVRLW 337 69999955**7444************************* PP == domain 6 score: 17.5 bits; conditional E-value: 5.4e-05 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 ++l +l GH + v++l sp +a ++++sdD r+W tr|S4RZZ2|S4RZZ2_PETMA 393 KNLLSL-GHnNAVRCLVHSPTSAGFMTCSDDYRARFW 428 566677.9*788************************* PP >> tr|S4RMJ0|S4RMJ0_PETMA Uncharacterized protein OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.4 0.0 0.38 29 3 28 .. 405 431 .. 404 443 .. 0.77 2 ! 13.7 0.6 0.0009 0.069 1 38 [] 447 489 .. 447 489 .. 0.83 3 ? 2.8 0.2 2.4 1.8e+02 16 37 .. 514 535 .. 499 536 .. 0.65 4 ? 6.8 0.0 0.13 9.9 21 37 .. 636 652 .. 620 652 .. 0.77 5 ? 7.8 0.1 0.062 4.8 8 38 .] 708 739 .. 700 739 .. 0.77 6 ? 3.5 0.1 1.4 1.1e+02 9 35 .. 761 778 .. 750 781 .. 0.74 7 ? 7.1 0.0 0.1 8 7 29 .. 791 814 .. 786 827 .. 0.76 8 ! 18.9 0.1 1.9e-05 0.0015 2 38 .] 933 970 .. 932 970 .. 0.80 9 ? 3.7 0.1 1.2 96 5 36 .. 980 1010 .. 977 1012 .. 0.76 10 ? 2.3 0.0 3.5 2.7e+02 4 38 .] 1169 1216 .. 1167 1216 .. 0.82 11 ! 12.4 0.1 0.0023 0.17 8 37 .. 1227 1259 .. 1220 1259 .. 0.82 12 ! 30.4 0.0 4.7e-09 3.6e-07 5 38 .] 1454 1488 .. 1450 1488 .. 0.89 13 ? 2.4 0.0 3.1 2.4e+02 19 37 .. 1518 1536 .. 1500 1537 .. 0.71 14 ? 8.2 0.0 0.047 3.7 7 35 .. 1547 1577 .. 1542 1578 .. 0.76 15 ? 6.0 0.2 0.24 19 5 38 .] 1588 1633 .. 1584 1633 .. 0.73 16 ? 9.4 0.0 0.02 1.5 9 37 .. 1747 1775 .. 1740 1776 .. 0.86 Alignments for each domain: == domain 1 score: 5.4 bits; conditional E-value: 0.38 EEEEEESSSS.EEEEEEETTSSEEEEE CS WD40 3 clrtltGHss.vtslafspdgawlasG 28 ++r ltGHs+ vt+l + +++las+ tr|S4RMJ0|S4RMJ0_PETMA 405 NQRFLTGHSDkVTALTMNGASTLLASA 431 57899***666****999999999875 PP == domain 2 score: 13.7 bits; conditional E-value: 0.0009 TEEEEEEESS.SSEEEEEEETTSSEEEEE.....ETTSEEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgawlasG.....sdDgtvriWd 38 g+cl ++t H +sl+fs++ga l+ G ++++tv +Wd tr|S4RMJ0|S4RMJ0_PETMA 447 GECLSVFTPHlHALSSLSFSHSGAVLC-GvgkdsHEKNTVVVWD 489 68********77799999*******95.65354346*******9 PP == domain 3 score: 2.8 bits; conditional E-value: 2.4 EE.EETTSSEEEEEETTSEEEEE CS WD40 16 la.fspdgawlasGsdDgtvriW 37 ++ s d + ++s++ g+vr+W tr|S4RMJ0|S4RMJ0_PETMA 514 IKiASFDDTRMVSCG-RGSVRLW 535 33544555566799*.******* PP == domain 4 score: 6.8 bits; conditional E-value: 0.13 TSSEEEEEETTSEEEEE CS WD40 21 dgawlasGsdDgtvriW 37 + + a+GsdDg +r+W tr|S4RMJ0|S4RMJ0_PETMA 636 SEGLCATGSDDGFLRLW 652 444579*********** PP == domain 5 score: 7.8 bits; conditional E-value: 0.062 ESS.SSEEEEEEETTSSE..EEEEETTSEEEEEE CS WD40 8 tGH.ssvtslafspdgaw..lasGsdDgtvriWd 38 + H ++v ++ s dga l++ ++D +vr+Wd tr|S4RMJ0|S4RMJ0_PETMA 708 RSHaGPVLGC--SADGARrhLVTVGRDASVRVWD 739 4787789999..55555555888888*******9 PP == domain 6 score: 3.5 bits; conditional E-value: 1.4 SSSSEEEEEEETTSSEEEEE.ETTSEEE CS WD40 9 GHssvtslafspdgawlasG.sdDgtvr 35 +p ++la+G s Dg++r tr|S4RMJ0|S4RMJ0_PETMA 761 C---------HPVRQLLACGfS-DGSLR 778 3.........555555****55.***98 PP == domain 7 score: 7.1 bits; conditional E-value: 0.1 EESS.SSEEEEEEETTSSEEEEEE CS WD40 7 ltGH.ssvtslafspdgawlasGs 29 + H + +t+lafs++g ++ s++ tr|S4RMJ0|S4RMJ0_PETMA 791 HKQHrGQITALAFSRSGEFMYSAC 814 4567666************98653 PP == domain 8 score: 18.9 bits; conditional E-value: 1.9e-05 EEEEEEE.SS.SS.E.EEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtlt.GH.ss.v.tslafspdgawlasGsdDgtvriWd 38 ++lr+l+ +H + v t++ s dg+++a+++ D+ v++Wd tr|S4RMJ0|S4RMJ0_PETMA 933 RNLRELSaAHhTRcVsTDV--SEDGRFFATAG-DRVVKVWD 970 6888998767433576666..***********.*******9 PP == domain 9 score: 3.7 bits; conditional E-value: 1.2 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvri 36 +t+ GH sv+++ f pd+ l+s + i tr|S4RMJ0|S4RMJ0_PETMA 980 QTFIGHsESVRHVMFTPDQLGLVSV--GDAILI 1010 6899**777****999999988754..444455 PP == domain 10 score: 2.3 bits; conditional E-value: 3.5 EEEEESS.SSEEEEEEETTSSE.............EEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgaw.............lasGsdDgtvriWd 38 +r+l GH ++ la s+d + l+s+s g +Wd tr|S4RMJ0|S4RMJ0_PETMA 1169 QRHLLGHqREISTLAISHDAQVsksplpasvqtptLVSAS-CGQMCMWD 1216 68999**555*****9999998888888888888888888.88888887 PP == domain 11 score: 12.4 bits; conditional E-value: 0.0023 ESS.SSEEEEEEETTSSEEEE.E.ETTSEEEEE CS WD40 8 tGH.ssvtslafspdgawlas.G.sdDgtvriW 37 + H ++v +lafs+d ++l+s G ++Dg++ +W tr|S4RMJ0|S4RMJ0_PETMA 1227 SHHrGDVQALAFSRDDRFLLSlGdGRDGSLALW 1259 567889*************9865567****999 PP == domain 12 score: 30.4 bits; conditional E-value: 4.7e-09 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 r +GH vt+lafspd a++as+ Dg++r+Wd tr|S4RMJ0|S4RMJ0_PETMA 1454 RLVSGHaEQVTGLAFSPDEALFASSAADGSLRVWD 1488 5578**777**************9988*******9 PP == domain 13 score: 2.4 bits; conditional E-value: 3.1 ETTSSEEEEEETTSEEEEE CS WD40 19 spdgawlasGsdDgtvriW 37 s+ ++++a+G Dg vr++ tr|S4RMJ0|S4RMJ0_PETMA 1518 SRFSRLVAAGYGDGAVRLF 1536 445566999955*****97 PP == domain 14 score: 8.2 bits; conditional E-value: 0.047 EESS.SSEEEEEEETTSSE.EEEEETTSEEE CS WD40 7 ltGH.ssvtslafspdgaw.lasGsdDgtvr 35 + H s vt+lafs d l+sG +Dg v tr|S4RMJ0|S4RMJ0_PETMA 1547 MRSHgSAVTALAFSTDAGEfLVSGARDGLVV 1577 578*777*****77766663789999*9886 PP == domain 15 score: 6.0 bits; conditional E-value: 0.24 EEEESS..SSEEEEE...........EETTSSEEEEEETTSEEEEEE CS WD40 5 rtltGH..ssvtsla...........fspdgawlasGsdDgtvriWd 38 r+ t H s++++++ + wla +s+D v iW+ tr|S4RMJ0|S4RMJ0_PETMA 1588 RVVTDHrpSPISAIDcvhsqerlvigSHGGEMWLA-ASRDSRVSIWS 1633 56677877776666666677788887777777787.677*******5 PP == domain 16 score: 9.4 bits; conditional E-value: 0.02 SS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 9 GH.ssvtslafspdgawlasGsdDgtvriW 37 GH + v++++fsp+g+ l+++ g + +W tr|S4RMJ0|S4RMJ0_PETMA 1747 GHeDAVRACRFSPSGRRLFTAA-HGAIFVW 1775 9*777**************999.9999999 PP >> tr|S4RT22|S4RT22_PETMA Guanine nucleotide binding protein (G protein), beta polypeptide 3a OS=Petromyzon marinus OX= # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 11.8 0.1 0.0035 0.27 12 37 .. 11 36 .. 3 37 .. 0.87 2 ! 20.0 0.2 9e-06 0.0007 4 38 .] 48 82 .. 45 82 .. 0.90 3 ! 20.7 0.0 5.5e-06 0.00042 2 38 .] 87 124 .. 86 124 .. 0.89 4 ! 35.3 0.0 1.3e-10 1e-08 2 38 .] 129 166 .. 128 166 .. 0.95 5 ! 24.1 0.1 4.3e-07 3.4e-05 7 38 .] 175 210 .. 170 210 .. 0.85 6 ! 20.3 0.1 7.2e-06 0.00056 6 38 .] 219 252 .] 215 252 .] 0.92 Alignments for each domain: == domain 1 score: 11.8 bits; conditional E-value: 0.0035 SEEEEEEETTSSEEEEEETTSEEEEE CS WD40 12 svtslafspdgawlasGsdDgtvriW 37 +v +++ p+g+++a+G+ D+ + i+ tr|S4RT22|S4RT22_PETMA 11 WVMTCSYAPSGNYVACGGLDNICSIY 36 488899*****************998 PP == domain 2 score: 20.0 bits; conditional E-value: 9e-06 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 r+l GH + ++++f +d++ ++s++ D t+ +Wd tr|S4RT22|S4RT22_PETMA 48 SRELPGHtGYLSCCRFLDDNRIVTSSG-DTTCALWD 82 57899**666************99989.*******9 PP == domain 3 score: 20.7 bits; conditional E-value: 5.5e-06 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 q+++ + GH ++v sla pdg+ ++sG D + ++Wd tr|S4RT22|S4RT22_PETMA 87 QQTTAFVGHsGDVMSLALAPDGRAFVSGACDASAKLWD 124 6677799**777****************77*******9 PP == domain 4 score: 35.3 bits; conditional E-value: 1.3e-10 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 c +t++GH s++++++f p+g+ +a+GsdD t+r++d tr|S4RT22|S4RT22_PETMA 129 MCRQTFSGHeSDINAICFFPNGNAFATGSDDATCRLFD 166 5899*****999************************98 PP == domain 5 score: 24.1 bits; conditional E-value: 4.3e-07 EESS.SS...EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 7 ltGH.ss...vtslafspdgawlasGsdDgtvriWd 38 l H + +ts+afs++g++l++G dD ++ +Wd tr|S4RT22|S4RT22_PETMA 175 LYSHdNIicgITSVAFSRSGRLLLAGYDDFNCNVWD 210 55684336669************************9 PP == domain 6 score: 20.3 bits; conditional E-value: 7.2e-06 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 6 tltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +l GH + v++l + dg +a+Gs+D ++iW+ tr|S4RT22|S4RT22_PETMA 219 VLAGHdNRVSCLGVTEDGMAVATGSWDSFLKIWN 252 688**888****99999999*************8 PP >> tr|S4RSC4|S4RSC4_PETMA WD repeat, sterile alpha motif and U-box domain containing 1 OS=Petromyzon marinus OX=7757 PE # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 12.6 0.1 0.0019 0.15 4 35 .. 5 35 .. 3 37 .. 0.85 2 ! 23.6 0.0 6.6e-07 5.1e-05 6 38 .] 49 82 .. 44 82 .. 0.87 3 ? 9.9 0.0 0.013 1 13 38 .] 126 142 .. 114 142 .. 0.85 4 ? 5.2 0.2 0.41 32 12 37 .. 158 183 .. 146 184 .. 0.73 5 ? 9.6 0.1 0.017 1.3 2 37 .. 189 239 .. 188 240 .. 0.73 6 ! 31.8 0.5 1.6e-09 1.2e-07 6 38 .] 255 288 .. 249 288 .. 0.92 7 ! 26.8 0.0 6.1e-08 4.7e-06 9 37 .. 300 329 .. 292 330 .. 0.83 Alignments for each domain: == domain 1 score: 12.6 bits; conditional E-value: 0.0019 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvr 35 +++l H ++v+++ + + la++s D+tvr tr|S4RSC4|S4RSC4_PETMA 5 IQSLGEHaDDVNCV--AASRHCLATCSSDKTVR 35 688999*888****..777777999988****9 PP == domain 2 score: 23.6 bits; conditional E-value: 6.6e-07 EEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 6 tltGHss.vtslafspdgawlasGsdDgtvriWd 38 +++H+ v++++f+pdg++la++s gt +Wd tr|S4RSC4|S4RSC4_PETMA 49 PIRAHTYaVHCCCFNPDGSLLATCSTEGTTALWD 82 56799445*****************9*******9 PP == domain 3 score: 9.9 bits; conditional E-value: 0.013 EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriWd 38 v +l l sGs Dgt+ +Wd tr|S4RSC4|S4RSC4_PETMA 126 VECL--------L-SGSTDGTLALWD 142 7788........8.7*99*******9 PP == domain 4 score: 5.2 bits; conditional E-value: 0.41 SEEEEEEETTSSEEEEEETTSEEEEE CS WD40 12 svtslafspdgawlasGsdDgtvriW 37 sv+++afsp g+ +++Gs g + +W tr|S4RSC4|S4RSC4_PETMA 158 SVSGCAFSPCGRAFVTGSTIGELSVW 183 499**************965555555 PP == domain 5 score: 9.6 bits; conditional E-value: 0.017 EEEEEEE.SS.SSEEEEE.............EETTSSEEEEEETTSEEEEE CS WD40 2 qclrtlt.GH.ssvtsla.............fspdgawlasGsdDgtvriW 37 +cl+t + +H +vt+++ f + +as++ D+++ +W tr|S4RSC4|S4RSC4_PETMA 189 RCLHTTRsAHdLGVTAVSfsppprpvagverFETQRSIMASCGQDNKIALW 239 6999975599555****9666666666666666666668999999999999 PP == domain 6 score: 31.8 bits; conditional E-value: 1.6e-09 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 6 tltGH.ssvtslafspdgawlasGsdDgtvriWd 38 l+GH +v +++fs+dg+ lasGs D++v +W+ tr|S4RSC4|S4RSC4_PETMA 255 CLEGHtAPVLCCCFSSDGHVLASGSVDKSVILWN 288 478**888*************************8 PP == domain 7 score: 26.8 bits; conditional E-value: 6.1e-08 SS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 9 GH.ssvtslafspdgawlasGsdDgtvriW 37 H vts+af p ++l++Gs+D+tv++W tr|S4RSC4|S4RSC4_PETMA 300 EHqRYVTSCAFTPGAPYLITGSMDKTVKLW 329 58444************************* PP >> tr|S4RLE5|S4RLE5_PETMA WD repeat domain 86 OS=Petromyzon marinus OX=7757 GN=WDR86 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 12.3 0.0 0.0025 0.19 5 38 .] 7 42 .. 5 42 .. 0.85 2 ! 21.7 0.0 2.5e-06 0.0002 6 38 .] 54 87 .. 51 87 .. 0.94 3 ! 23.4 0.6 7.2e-07 5.6e-05 1 38 [] 91 127 .. 91 127 .. 0.92 4 ! 15.5 0.0 0.00023 0.018 4 37 .. 134 187 .. 131 188 .. 0.63 5 ! 27.5 0.0 3.8e-08 2.9e-06 2 38 .] 193 230 .. 192 230 .. 0.93 6 ! 11.9 0.0 0.0031 0.24 1 37 [. 234 269 .. 234 269 .. 0.83 7 ? 2.5 0.1 2.9 2.3e+02 3 32 .. 276 304 .. 274 310 .. 0.67 8 ? 6.5 0.0 0.16 13 3 16 .. 316 330 .. 314 331 .. 0.80 Alignments for each domain: == domain 1 score: 12.3 bits; conditional E-value: 0.0025 EEEESS.SSEEEEE.EETTSSEEEEEETTSEEEEEE CS WD40 5 rtltGH.ssvtsla.fspdgawlasGsdDgtvriWd 38 r+l G ++v++++ + +a+l++G++Dg+ +Wd tr|S4RLE5|S4RLE5_PETMA 7 RILVGPtGGVNCMSaGEDGSALLLTGGEDGSAALWD 42 667788667*****8888888899***********9 PP == domain 2 score: 21.7 bits; conditional E-value: 2.5e-06 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 6 tltGH.ssvtslafspdgawlasGsdDgtvriWd 38 tl+GH + +t++a dga +++s D+t r Wd tr|S4RLE5|S4RLE5_PETMA 54 TLRGHeGYITHCALAADGARAFTCSADRTARCWD 87 89***777************99***********9 PP == domain 3 score: 23.4 bits; conditional E-value: 7.2e-07 TEEEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 1 gqclrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 g cl++++GH + v+ + p+ wl+s+s+D+t r Wd tr|S4RLE5|S4RLE5_PETMA 91 GHCLQVYRGHAGvVNRV--VPHAGWLFSSSYDKTARCWD 127 57********6657***..*******************9 PP == domain 4 score: 15.5 bits; conditional E-value: 0.00023 EEEEESS.SSE..EEEEEETTSSE.................EEEEETTSEEEEE CS WD40 4 lrtltGH.ssv..tslafspdgaw.................lasGsdDgtvriW 37 lr++ GH s+v +l +p g l+sGs Dgtvr+W tr|S4RLE5|S4RLE5_PETMA 134 LRVFAGHrSCVlpLALYCPPKGERrsssaalaaleenttllLMSGSVDGTVRLW 187 66777776665445665444444455555555556666655679********** PP == domain 5 score: 27.5 bits; conditional E-value: 3.8e-08 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 c rtl+GH ++v +la++ ++ l sG+ Dgtvr Wd tr|S4RLE5|S4RLE5_PETMA 193 ACARTLRGHqGPVLCLAVDASNGALYSGGADGTVRKWD 230 699******888*****99999999************9 PP == domain 6 score: 11.9 bits; conditional E-value: 0.0031 TEEEEEEESSSS.EEEEEEETTSSE....EEEEETTSEEEEE CS WD40 1 gqclrtltGHss.vtslafspdgaw....lasGsdDgtvriW 37 gq+lr++t H++ v +l ++ l sGs Dgt r W tr|S4RLE5|S4RLE5_PETMA 234 GQQLRSYTEHTDlVICL------QLanrhLYSGSSDGTARRW 269 689*******7787799......66666689**99***9977 PP == domain 7 score: 2.5 bits; conditional E-value: 2.9 EEEEEESSSS.EEEEEEETTSSE....EEEEETTS CS WD40 3 clrtltGHss.vtslafspdgaw....lasGsdDg 32 c r+++ H++ v+ l ++ l++Gs D tr|S4RLE5|S4RLE5_PETMA 276 CARVYRPHKHtVSTL------RYhdgiLFTGSGDT 304 889999997779998......44444345776565 PP == domain 8 score: 6.5 bits; conditional E-value: 0.16 EEEEEESSSS.EEEE CS WD40 3 clrtltGHss.vtsl 16 + rt++GH++ +++l tr|S4RLE5|S4RLE5_PETMA 316 LKRTFKGHTGiINCL 330 679*****6647**9 PP >> tr|S4RKB3|S4RKB3_PETMA Ribosome biogenesis protein WDR12 OS=Petromyzon marinus OX=7757 GN=WDR12 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.9 2.1 0.057 4.4 13 37 .. 104 126 .. 96 127 .. 0.78 2 ! 14.3 0.0 0.00057 0.044 1 37 [. 130 170 .. 130 171 .. 0.83 3 ! 25.0 0.3 2.4e-07 1.8e-05 2 38 .] 180 217 .. 179 217 .. 0.91 4 ! 26.1 0.4 1.1e-07 8.2e-06 2 38 .] 249 285 .. 248 285 .. 0.87 5 ! 23.7 0.1 6e-07 4.6e-05 5 38 .] 293 326 .. 289 326 .. 0.87 6 ! 24.2 0.6 4.1e-07 3.2e-05 5 38 .] 337 372 .. 334 372 .. 0.92 7 ? 6.2 0.0 0.2 15 7 34 .. 383 410 .. 377 414 .. 0.76 Alignments for each domain: == domain 1 score: 7.9 bits; conditional E-value: 0.057 EEEEEEETTSSEEEEEETTSEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriW 37 v+++ +w++sGs+D+t r+W tr|S4RKB3|S4RKB3_PETMA 104 VSAV--KVCDDWILSGSYDKTGRVW 126 6655..44679************** PP == domain 2 score: 14.3 bits; conditional E-value: 0.00057 TEEEEEEESSSS.EEEEEEETTSSE.........EEEEETTSEEEEE CS WD40 1 gqclrtltGHss.vtslafspdgaw.........lasGsdDgtvriW 37 g++l+tl+GH+ v ++ w l+++s D+t iW tr|S4RKB3|S4RKB3_PETMA 130 GKPLTTLSGHTEvVKDV------EWinkgeesclLLTASQDQTAIIW 170 689*******6656999......77777777887889********** PP == domain 3 score: 25.0 bits; conditional E-value: 2.4e-07 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++ + ++GH +sv ++a++ + ++sGs+D+ ++iW+ tr|S4RKB3|S4RKB3_PETMA 180 KPRHCCRGHaGSVEAVAVNNTYTKFCSGSWDKMIKIWS 217 577899***999*****99999999************5 PP == domain 4 score: 26.1 bits; conditional E-value: 1.1e-07 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +++ t++GH v+s+ +s d +s+s+D+t+r+Wd tr|S4RKB3|S4RKB3_PETMA 249 TPIMTISGHnEAVSSVLWSEDLEI-CSASWDHTIRLWD 285 578999***555****99999888.689*********9 PP == domain 5 score: 23.7 bits; conditional E-value: 6e-07 EEEESSSSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 5 rtltGHssvtslafspdgawlasGsdDgtvriWd 38 +l G + v+s+++sp + +asGs D+++riWd tr|S4RKB3|S4RKB3_PETMA 293 ASLGGNKVVNSISYSPLCKRIASGSTDRHIRIWD 326 677788658************************9 PP == domain 6 score: 24.2 bits; conditional E-value: 4.1e-07 EEEESS.SSEEEEEEETTSSE.EEEEETTSEEEEEE CS WD40 5 rtltGH.ssvtslafspdgaw.lasGsdDgtvriWd 38 +lt H ++vts+++sp+++ l+sG D+ v++Wd tr|S4RKB3|S4RKB3_PETMA 337 LSLTSHtGWVTSVKWSPHNDKqLISGAIDKMVKLWD 372 6899**888************999***********9 PP == domain 7 score: 6.2 bits; conditional E-value: 0.2 EESS.SSEEEEEEETTSSEEEEEETTSEE CS WD40 7 ltGH.ssvtslafspdgawlasGsdDgtv 34 +H + ++ + ++ +l sG+ D+++ tr|S4RKB3|S4RKB3_PETMA 383 MAAHeEKILCVEWAENNMLL-SGGADNKL 410 56896669***888888887.79889876 PP >> tr|S4RJW8|S4RJW8_PETMA Uncharacterized protein OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.3 0.0 0.00057 0.044 23 38 .] 12 27 .. 6 27 .. 0.88 2 ! 19.4 0.1 1.4e-05 0.0011 1 38 [] 32 70 .. 32 70 .. 0.79 3 ! 17.2 0.0 6.6e-05 0.0051 9 38 .] 129 159 .. 125 159 .. 0.92 4 ! 28.5 0.0 1.8e-08 1.4e-06 8 38 .] 171 203 .. 164 203 .. 0.87 5 ? 5.4 0.0 0.36 27 1 36 [. 207 247 .. 207 248 .. 0.79 6 ! 14.6 0.0 0.00046 0.036 8 38 .] 271 301 .. 266 301 .. 0.87 7 ! 14.9 0.0 0.00035 0.027 4 38 .] 424 459 .. 421 459 .. 0.88 Alignments for each domain: == domain 1 score: 14.3 bits; conditional E-value: 0.00057 SEEEEEETTSEEEEEE CS WD40 23 awlasGsdDgtvriWd 38 +++++G++D+tvr+W+ tr|S4RJW8|S4RJW8_PETMA 12 SLVVTGGMDRTVRLWN 27 3599***********8 PP == domain 2 score: 19.4 bits; conditional E-value: 1.4e-05 TEEEEEEESS.SSEEEEEEETTSSEEE.EEETTSEEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgawla.sGsdDgtvriWd 38 g+++++l+GH s+++ l+ + + + ++ Gs D++v++Wd tr|S4RJW8|S4RJW8_PETMA 32 GRPTGVLRGHtSPICYLSICEETSRIFsVGS-DRNVKVWD 70 57899*****999*98876666666651588.*******9 PP == domain 3 score: 17.2 bits; conditional E-value: 6.6e-05 SS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 9 GH.ssvtslafspdgawlasGsdDgtvriWd 38 H +v+++++s + + ++s+s+D v++Wd tr|S4RJW8|S4RJW8_PETMA 129 SHrEPVRCCRYSAEFRQVVSCSEDSVVKLWD 159 69888****99999999*************9 PP == domain 4 score: 28.5 bits; conditional E-value: 1.8e-08 ESS..SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 8 tGH..ssvtslafspdgawlasGsdDgtvriWd 38 +H s +t++af+++g+ l++G++Dg +++W+ tr|S4RJW8|S4RJW8_PETMA 171 GAHgeSAITCMAFDSSGRRLITGGRDGCLKVWN 203 5897555*************************8 PP == domain 5 score: 5.4 bits; conditional E-value: 0.36 TEEEEEEESS.SS..EEEEE..EETTSSEEEEEETTSEEEE CS WD40 1 gqclrtltGH.ss..vtsla..fspdgawlasGsdDgtvri 36 gqclrtl+ + + ++++ + +++++s ++D+ + i tr|S4RJW8|S4RJW8_PETMA 207 GQCLRTLRKQrNAeeICDCTyvVVNKNKYIISVGWDKRINI 247 79*****99986788999977755555667889****9988 PP == domain 6 score: 14.6 bits; conditional E-value: 0.00046 ESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 8 tGH.ssvtslafspdgawlasGsdDgtvriWd 38 +GH +v ++a +p + + a++s+Dg v +W+ tr|S4RJW8|S4RJW8_PETMA 271 KGHrEDVLCVAQCPPSLL-ATSSYDGEVIVWN 301 5**999****99999888.67888*******8 PP == domain 7 score: 14.9 bits; conditional E-value: 0.00035 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 + +++H s +ts+++ ++++l+++ D++vr+W+ tr|S4RJW8|S4RJW8_PETMA 424 VSLWRAHvSAITSMDVIEEHKLLLTAALDCSVRLWS 459 555799*999**************9999*******5 PP >> tr|S4RPW0|S4RPW0_PETMA Uncharacterized protein OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.7 0.0 2.3e-05 0.0018 3 38 .] 84 122 .. 82 122 .. 0.81 2 ! 20.4 0.2 6.7e-06 0.00052 2 38 .] 127 166 .. 126 166 .. 0.84 3 ! 10.4 0.1 0.0095 0.74 12 37 .. 180 205 .. 169 205 .. 0.88 4 ? 5.1 0.0 0.45 35 15 38 .] 281 302 .. 273 302 .. 0.76 5 ! 14.1 0.0 0.00065 0.05 13 38 .] 344 368 .. 325 368 .. 0.83 6 ! 13.4 0.0 0.0011 0.082 18 38 .] 405 424 .. 379 424 .. 0.70 7 ! 15.4 0.0 0.00026 0.02 12 38 .] 483 509 .. 475 509 .. 0.90 8 ? 4.1 0.0 0.95 74 6 36 .. 518 552 .. 514 554 .. 0.68 9 ! 13.7 0.0 0.00086 0.066 4 36 .. 562 597 .. 559 599 .. 0.79 Alignments for each domain: == domain 1 score: 18.7 bits; conditional E-value: 2.3e-05 EEEEEESS.SSEEEEEEETTSSEEEEE..ETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasG..sdDgtvriWd 38 + ++l + + +t++afspdg++l++G + + vr+Wd tr|S4RPW0|S4RPW0_PETMA 84 QSHILNASrKTITAVAFSPDGKYLVTGesGHMPAVRVWD 122 56778888788**************98654588888887 PP == domain 2 score: 20.4 bits; conditional E-value: 6.7e-06 EEEEEEESSSS.EEEEEEETTSSEEEE.E.ETTSEEEEEE CS WD40 2 qclrtltGHss.vtslafspdgawlas.G.sdDgtvriWd 38 ++++++ GH+ v ++ fsp+ ++++s G + D v +Wd tr|S4RPW0|S4RPW0_PETMA 127 SQVYEFQGHKYgVACVVFSPNMKYIVSvGhHHDMIVNVWD 166 67899****555************98626546*******9 PP == domain 3 score: 10.4 bits; conditional E-value: 0.0095 S.EEEEEEETTSSEEEEEETTSEEEEE CS WD40 12 s.vtslafspdgawlasGsdDgtvriW 37 s v++++fs d++ +++ + +++v++W tr|S4RPW0|S4RPW0_PETMA 180 SkVSAVSFSADSSTFVTVG-NRHVKFW 205 3499*************9*.******* PP == domain 4 score: 5.1 bits; conditional E-value: 0.45 EEEEETTSSEEEEEETTSEEEEEE CS WD40 15 slafspdgawlasGsdDgtvriWd 38 +l s + ++++G+ Dg vr+++ tr|S4RPW0|S4RPW0_PETMA 281 CL--SVSEELIFCGCSDGLVRVFN 302 44..556667889977******97 PP == domain 5 score: 14.1 bits; conditional E-value: 0.00065 EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriWd 38 v +l f+p ++wl++ D+++++Wd tr|S4RPW0|S4RPW0_PETMA 344 V-ALTFDPTNRWLSCVYNDHSLYVWD 368 4.788*******965578*******9 PP == domain 6 score: 13.4 bits; conditional E-value: 0.0011 EETTSSEEEEEETTSEEEEEE CS WD40 18 fspdgawlasGsdDgtvriWd 38 p g++ a++s D+tvr+W+ tr|S4RPW0|S4RPW0_PETMA 405 CLPPGTF-ATCSSDNTVRLWN 424 4577888.56666*******8 PP == domain 7 score: 15.4 bits; conditional E-value: 0.00026 SEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 12 svtslafspdgawlasGsdDgtvriWd 38 +++ l++spdg+ lasG++ g++ri+d tr|S4RPW0|S4RPW0_PETMA 483 GIRTLCVSPDGQHLASGDRTGNLRIYD 509 49999********************98 PP == domain 8 score: 4.1 bits; conditional E-value: 0.95 EEESS.SSEEEEEEETTSSE.........EEEEETTSEEEE CS WD40 6 tltGH.ssvtslafspdgaw.........lasGsdDgtvri 36 ++++H + v +l + la++s+D+ +++ tr|S4RPW0|S4RPW0_PETMA 518 KIEAHeTEVMCLE------YstpdtgvklLATASRDRLIHV 552 5578877798995......33333334558999****9986 PP == domain 9 score: 13.7 bits; conditional E-value: 0.00086 EEEEESS.SSEEEEEEETTSSE..EEEEETTSEEEE CS WD40 4 lrtltGH.ssvtslafspdgaw..lasGsdDgtvri 36 +tl+ H s vt+++fs g+ l+s++ D+++++ tr|S4RPW0|S4RPW0_PETMA 562 EQTLDEHsSAVTAVKFSGIGDQlqLVSCGSDKSIYF 597 578999*666************66466655***975 PP >> tr|S4R6Y0|S4R6Y0_PETMA Mitogen-activated protein kinase binding protein 1 OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.8 0.0 1e-05 0.0008 1 38 [] 42 82 .. 42 82 .. 0.85 2 ! 16.3 0.0 0.00013 0.01 4 38 .] 89 126 .. 86 126 .. 0.80 3 ! 14.9 0.2 0.00035 0.027 12 37 .. 140 165 .. 133 165 .. 0.91 4 ? 5.3 0.2 0.4 31 15 38 .] 305 328 .. 287 328 .. 0.84 5 ! 13.0 0.1 0.0015 0.11 13 38 .] 351 386 .. 340 386 .. 0.74 6 ! 12.0 0.0 0.003 0.23 5 36 .. 436 468 .. 432 470 .. 0.75 7 ? 4.5 0.0 0.72 55 7 36 .. 480 513 .. 475 515 .. 0.70 8 ? 8.7 0.0 0.033 2.6 3 35 .. 522 557 .. 520 558 .. 0.72 9 ? 9.2 0.0 0.024 1.8 13 38 .] 582 607 .. 569 607 .. 0.81 10 ? 5.1 0.0 0.44 34 7 38 .] 617 652 .. 611 652 .. 0.68 11 ! 12.4 0.4 0.0022 0.17 2 37 .. 657 693 .. 656 694 .. 0.82 Alignments for each domain: == domain 1 score: 19.8 bits; conditional E-value: 1e-05 TEEEEEEESS.SSEEEEEEETTSSEEEEE..ETTSEEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgawlasG..sdDgtvriWd 38 g++++++ + +++t lafspdg++l++G + + vr+Wd tr|S4R6Y0|S4R6Y0_PETMA 42 GKQTHIFNASrKPITTLAFSPDGKYLVTGesGHMPAVRVWD 82 5788999999999**************98654588888887 PP == domain 2 score: 16.3 bits; conditional E-value: 0.00013 EEEEESSSS.EEEEEEETTSSEEEEEET..TSEEEEEE CS WD40 4 lrtltGHss.vtslafspdgawlasGsd..DgtvriWd 38 + ++ H+ ++++afsp+ ++++s ++ D v +Wd tr|S4R6Y0|S4R6Y0_PETMA 89 VSEFQRHKYgISCVAFSPNVKYVVSVGYqhDMMVNVWD 126 6678889445************99754223*******9 PP == domain 3 score: 14.9 bits; conditional E-value: 0.00035 S.EEEEEEETTSSEEEEEETTSEEEEE CS WD40 12 s.vtslafspdgawlasGsdDgtvriW 37 s vt+++fs+d++++++ + +++vr+W tr|S4R6Y0|S4R6Y0_PETMA 140 SkVTAVSFSSDNSYFVTVG-NRHVRFW 165 349**************9*.******* PP == domain 4 score: 5.3 bits; conditional E-value: 0.4 EEEEETTSSEEEEEETTSEEEEEE CS WD40 15 slafspdgawlasGsdDgtvriWd 38 +l +++++awl++ D++++ Wd tr|S4R6Y0|S4R6Y0_PETMA 305 ALTYDSSNAWLTCVYNDHSLYTWD 328 67899*****975588*****998 PP == domain 5 score: 13.0 bits; conditional E-value: 0.0015 EEEEE...........EETTSSEEEEEETTSEEEEEE CS WD40 13 vtsla...........fspdgawlasGsdDgtvriWd 38 ++++ p g++l+++s D t+r+W+ tr|S4R6Y0|S4R6Y0_PETMA 351 IWGVEvypvleesspaCLPPGSFLTCSS-DSTIRVWS 386 6666666666666666779999*98777.*******5 PP == domain 6 score: 12.0 bits; conditional E-value: 0.003 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvri 36 +tlt ++++l++spdg+ lasG++ gtvri tr|S4R6Y0|S4R6Y0_PETMA 436 HTLTEAkLGIRALCVSPDGQHLASGDRIGTVRI 468 5555443349*************9987777777 PP == domain 7 score: 4.5 bits; conditional E-value: 0.72 EESS.SSEEEEEEETTSSE.........EEEEETTSEEEE CS WD40 7 ltGH.ssvtslafspdgaw.........lasGsdDgtvri 36 +++H s v +l + las+s+D+ +++ tr|S4R6Y0|S4R6Y0_PETMA 480 IDAHdSEVLCLE------YsqpetgvklLASASRDRLIHV 513 568966699994......44444446768999****9987 PP == domain 8 score: 8.7 bits; conditional E-value: 0.033 EEEEEESS.SSEEEEEEETTSSE........EEEEETTSEEE CS WD40 3 clrtltGH.ssvtslafspdgaw........lasGsdDgtvr 35 +++tl+ H ss+t+++ + ++s++ D++++ tr|S4R6Y0|S4R6Y0_PETMA 522 LTQTLDDHsSSITAVK------FiggaeqlnMVSCGADKSIY 557 678999**888****5......444444466477877**996 PP == domain 9 score: 9.2 bits; conditional E-value: 0.024 EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriWd 38 ++++++ g++ + G+ D++vri+d tr|S4R6Y0|S4R6Y0_PETMA 582 LYDMDVDATGKYAVVGCQDRNVRIFD 607 678899******999*********98 PP == domain 10 score: 5.1 bits; conditional E-value: 0.44 EESS..SS...EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 7 ltGH..ss...vtslafspdgawlasGsdDgtvriWd 38 ++G ++ + l+ +p+g ++a+++ D+++ ++d tr|S4R6Y0|S4R6Y0_PETMA 617 YKGSqgKDgslI-KLQMDPSGMYVATSCSDKNLTLFD 652 555543335555.7788*******96644**998876 PP == domain 11 score: 12.4 bits; conditional E-value: 0.0022 EEEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEE CS WD40 2 qclrtltGHss.vtslafspdgawlasGsdDgtvriW 37 +c+ + GHs vt+++fs+d + l+s s D +W tr|S4R6Y0|S4R6Y0_PETMA 657 ECVASAFGHSEiVTGMKFSHDCKHLISVSGDSCMFLW 693 67777559*6657************98766*999999 PP >> tr|S4R9B8|S4R9B8_PETMA MTOR associated protein, LST8 homolog OS=Petromyzon marinus OX=7757 GN=MLST8 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.1 0.0 0.012 0.9 24 37 .. 16 29 .. 7 30 .. 0.82 2 ! 15.0 0.0 0.00034 0.027 2 38 .] 35 71 .. 34 71 .. 0.86 3 ! 21.6 0.1 2.8e-06 0.00022 3 38 .] 79 115 .. 77 115 .. 0.88 4 ! 13.8 0.0 0.0008 0.062 2 38 .] 122 158 .. 121 158 .. 0.96 5 ? 6.0 0.0 0.24 19 14 38 .] 176 200 .. 166 200 .. 0.86 6 ! 20.0 0.1 9.1e-06 0.0007 8 37 .. 219 249 .. 210 250 .. 0.78 7 ! 16.8 0.6 9e-05 0.007 14 38 .] 276 300 .. 264 300 .. 0.89 8 ? 8.4 0.0 0.041 3.2 3 20 .. 306 324 .. 304 326 .. 0.84 Alignments for each domain: == domain 1 score: 10.1 bits; conditional E-value: 0.012 EEEEEETTSEEEEE CS WD40 24 wlasGsdDgtvriW 37 la++++D+t+r+W tr|S4R9B8|S4R9B8_PETMA 16 ILATAGYDHTIRFW 29 5888888******* PP == domain 2 score: 15.0 bits; conditional E-value: 0.00034 EEEEEEESS..SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH..ssvtslafspdgawlasGsdDgtvriWd 38 c+rt H s v++l pd +++a+++ +++r++d tr|S4R9B8|S4R9B8_PETMA 35 VCTRTVQ-HqdSQVNALEITPDRTLIAAAG-EKHIRMYD 71 6889985.75444**************99*.******98 PP == domain 3 score: 21.6 bits; conditional E-value: 2.8e-06 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++ +++G ++v+s+ f+ dg+w+ +G++D+ riWd tr|S4R9B8|S4R9B8_PETMA 79 PVISYDGIsKNVSSVGFHEDGRWMYTGGEDCMTRIWD 115 666777776679************************9 PP == domain 4 score: 13.8 bits; conditional E-value: 0.0008 EEEEEEESSSSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGHssvtslafspdgawlasGsdDgtvriWd 38 qc+r+l +++++ +p++a l+ ++ g ++iWd tr|S4R9B8|S4R9B8_PETMA 122 QCQRILQVNAPINCVFLHPNQAELIVADQSGAIHIWD 158 8******9999**************9**********9 PP == domain 5 score: 6.0 bits; conditional E-value: 0.24 EEEEEETTSSEEEEE.ETTSEEEEEE CS WD40 14 tslafspdgawlasG.sdDgtvriWd 38 +++ +pd +++a+ s g +++W+ tr|S4R9B8|S4R9B8_PETMA 176 NCVHIDPDASYMAAVnS-TGQCYVWN 200 8**********997767.*******8 PP == domain 6 score: 20.0 bits; conditional E-value: 9.1e-06 ESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 8 tGH.ssvtslafspdgawlasGsdDgtvriW 37 ++H + ++fspd+++la++s D+t+ iW tr|S4R9B8|S4R9B8_PETMA 219 SAHkTYALKCRFSPDSTLLATCSSDQTCTIW 249 56633334566***********88******* PP == domain 7 score: 16.8 bits; conditional E-value: 9e-05 EEEEEETTSSEEEEEETTSEEEEEE CS WD40 14 tslafspdgawlasGsdDgtvriWd 38 +++afs d+++++++s D+t r+W+ tr|S4R9B8|S4R9B8_PETMA 276 WDCAFSGDSQYMVTASSDNTARLWS 300 799*********99978*******5 PP == domain 8 score: 8.4 bits; conditional E-value: 0.041 EEEEEESS.SSEEEEEEET CS WD40 3 clrtltGH.ssvtslafsp 20 r++tGH + v +laf++ tr|S4R9B8|S4R9B8_PETMA 306 IKREYTGHqKAVVCLAFND 324 6789****99999**9976 PP >> tr|S4RY15|S4RY15_PETMA Cilia and flagella associated protein 52 OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.0 0.2 0.00016 0.012 5 37 .. 58 96 .. 54 97 .. 0.73 2 ! 18.3 0.0 3e-05 0.0024 10 38 .] 110 141 .. 101 141 .. 0.82 3 ? 4.2 0.0 0.86 66 22 37 .. 170 185 .. 153 186 .. 0.72 4 ? 5.2 0.0 0.42 32 8 31 .. 201 226 .. 194 231 .. 0.78 5 ? 1.7 0.0 5.5 4.2e+02 13 34 .. 253 273 .. 237 275 .. 0.79 6 ! 10.4 0.0 0.0099 0.76 8 37 .. 329 362 .. 321 363 .. 0.87 7 ? 3.2 0.0 1.8 1.4e+02 14 35 .. 381 402 .. 371 404 .. 0.86 8 ? 10.0 0.1 0.012 0.96 9 37 .. 418 447 .. 409 448 .. 0.84 9 ! 15.6 0.1 0.00021 0.016 8 38 .] 461 492 .. 454 492 .. 0.78 10 ? 1.9 0.0 4.6 3.6e+02 15 37 .. 510 532 .. 505 533 .. 0.72 11 ! 21.1 0.0 4e-06 0.00031 2 38 .] 538 578 .. 537 578 .. 0.83 12 ? 6.4 0.5 0.18 14 5 37 .. 586 619 .. 582 620 .. 0.70 Alignments for each domain: == domain 1 score: 16.0 bits; conditional E-value: 0.00016 EEEESS.SSEEEEEEETTSSEEEEE.....ETTSEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasG.....sdDgtvriW 37 l GH ++v++la+s +g+++asG + + v +W tr|S4RY15|S4RY15_PETMA 58 SFLHGHtNNVSCLAVSNSGHYVASGqvtymGFKADVILW 96 5578**999**************9844322226666666 PP == domain 2 score: 18.3 bits; conditional E-value: 3e-05 S.SSEEEEEEETTSSEEEE.EE.TTSEEEEEE CS WD40 10 H.ssvtslafspdgawlas.Gs.dDgtvriWd 38 H v +lafsp+ +las G+ dDg+v iW+ tr|S4RY15|S4RY15_PETMA 110 HkVKVEALAFSPNDLYLASlGGqDDGSVVIWN 141 644499***********9875558*******8 PP == domain 3 score: 4.2 bits; conditional E-value: 0.86 SSE.EEEEETTSEEEEE CS WD40 22 gaw.lasGsdDgtvriW 37 +++ +++++ + t+r+W tr|S4RY15|S4RY15_PETMA 170 SDLsFITAG-NDTIRVW 185 444335789.******* PP == domain 4 score: 5.2 bits; conditional E-value: 0.42 ESS.SS.EEEEEEETTSSEEEEEETT CS WD40 8 tGH.ss.vtslafspdgawlasGsdD 31 tG+ + + ++a+ pd +++ +G+ tr|S4RY15|S4RY15_PETMA 201 TGQlKRiIKCVAVAPDDSFFYCGTTS 226 57777756************999544 PP == domain 5 score: 1.7 bits; conditional E-value: 5.5 EEEEEEETTSSEEEEEETTSEE CS WD40 13 vtslafspdgawlasGsdDgtv 34 vt+l+ ++g +l+ G+ Dg v tr|S4RY15|S4RY15_PETMA 253 VTALSLLKSGELLV-GTGDGVV 273 99**9*******98.7549987 PP == domain 6 score: 10.4 bits; conditional E-value: 0.0099 ESS.SSEEEEE....EETTSSEEEEEETTSEEEEE CS WD40 8 tGH.ssvtsla....fspdgawlasGsdDgtvriW 37 t H +v+++a +s + ++a++s + +r+W tr|S4RY15|S4RY15_PETMA 329 TCHsEPVNDVAfpfiTSGTSELFATCS-SQDIRVW 362 589667*****99999999999*****.******* PP == domain 7 score: 3.2 bits; conditional E-value: 1.8 EEEEEETTSSEEEEE.ETTSEEE CS WD40 14 tslafspdgawlasG.sdDgtvr 35 +s++f ++g+ ++sG Dg++r tr|S4RY15|S4RY15_PETMA 381 HSIQFARNGKNIVSGwN-DGKIR 402 5788********98777.**998 PP == domain 8 score: 10.0 bits; conditional E-value: 0.012 SS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 9 GH.ssvtslafspdgawlasGsdDgtvriW 37 +H +vt ++ d + ++sG+ g vr+W tr|S4RY15|S4RY15_PETMA 418 AHgMGVTTVSLTGDCKRIISGGVSGQVRVW 447 78555****99999999************* PP == domain 9 score: 15.6 bits; conditional E-value: 0.00021 ESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 8 tGH.ssvtslafspdgawlasGsdDgtvriWd 38 + H ss+++++ ++ + +s+s Dgt+ iWd tr|S4RY15|S4RY15_PETMA 461 KEHkSSISCIRLKHNDKECVSASTDGTCIIWD 492 68*888****95555555667777*******9 PP == domain 10 score: 1.9 bits; conditional E-value: 4.6 EEEEETTSSEEEEEETTSEEEEE CS WD40 15 slafspdgawlasGsdDgtvriW 37 + +++p+ +++++ D+++ +W tr|S4RY15|S4RY15_PETMA 510 CACYHPEEFQIITSGTDRKIGFW 532 5556666666666655****999 PP == domain 11 score: 21.1 bits; conditional E-value: 4e-06 EEEEEEESS..SSEEEEEEETTSSEEEE..EETTSEEEEEE CS WD40 2 qclrtltGH..ssvtslafspdgawlas..GsdDgtvriWd 38 +++r+l++ +s++++++spdg ++++ G+dD+ +++W+ tr|S4RY15|S4RY15_PETMA 538 SLIRELEASqsGSINGMDVSPDGEYFVTvkGGDDKLIKVWS 578 5778888776444************98766899*******5 PP == domain 12 score: 6.4 bits; conditional E-value: 0.18 EEEESS.SSEEEEEEETTSSE.EEEEETTSEEEEE CS WD40 5 rtltGH.ssvtslafspdgaw.lasGsdDgtvriW 37 + +GH ++vt l+++p+ +w ++s s Dg + W tr|S4RY15|S4RY15_PETMA 586 FVGKGHsGNVTRLCVCPN-RWhILSVSTDGAILRW 619 4568**655****99998.7733466668887655 PP >> tr|S4RP24|S4RP24_PETMA WD repeat and SOCS box containing 1 OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.0 0.0 0.053 4.1 12 26 .. 37 51 .. 22 61 .. 0.85 2 ? 8.7 0.0 0.032 2.5 15 38 .] 142 165 .. 114 165 .. 0.76 3 ! 22.9 0.0 1.1e-06 8.2e-05 10 38 .] 178 208 .. 170 208 .. 0.86 4 ! 13.5 0.1 0.00098 0.075 2 37 .. 214 250 .. 213 251 .. 0.90 5 ! 30.6 0.0 3.9e-09 3e-07 3 38 .] 257 293 .. 255 293 .. 0.94 6 ! 14.1 0.1 0.00063 0.049 10 37 .. 321 347 .. 302 348 .. 0.86 7 ! 11.7 0.0 0.0036 0.28 15 37 .. 366 388 .. 356 388 .. 0.92 Alignments for each domain: == domain 1 score: 8.0 bits; conditional E-value: 0.053 SEEEEEEETTSSEEE CS WD40 12 svtslafspdgawla 26 v+++a+spdg+++a tr|S4RP24|S4RP24_PETMA 37 EVRAVAWSPDGTFVA 51 39***********86 PP == domain 2 score: 8.7 bits; conditional E-value: 0.032 EEEEETTSSEEEEEETTSEEEEEE CS WD40 15 slafspdgawlasGsdDgtvriWd 38 ++f++d la+G g ++iWd tr|S4RP24|S4RP24_PETMA 142 RFRFDDDALVLATGLASGRIKIWD 165 34499999999***66*******9 PP == domain 3 score: 22.9 bits; conditional E-value: 1.1e-06 SSS.EEEEEEETTSSE.EEEEETTSEEEEEE CS WD40 10 Hss.vtslafspdgaw.lasGsdDgtvriWd 38 H+ v +l f pdg++ l+s+s+D+t+r+Wd tr|S4RP24|S4RP24_PETMA 178 HTAiVQDLTFAPDGSLmLVSASRDKTLRVWD 208 744479**********55799*********9 PP == domain 4 score: 13.5 bits; conditional E-value: 0.00098 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 + +++l+GH ++v++ afs d ++l+s + ++v +W tr|S4RP24|S4RP24_PETMA 214 NMVKVLKGHhKWVNASAFSLDASMLCSVGAGKSVLLW 250 67899****999*************98777******* PP == domain 5 score: 30.6 bits; conditional E-value: 3.9e-09 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +lr l+GH ++v ++ fspdga+la++s D + +Wd tr|S4RP24|S4RP24_PETMA 257 LLRRLEGHlNDVVACEFSPDGALLATASHDTRCILWD 293 78999******99*************999*******9 PP == domain 6 score: 14.1 bits; conditional E-value: 0.00063 SSSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 10 HssvtslafspdgawlasGsdDgtvriW 37 H +v+++afs+dg +as dDg +r+W tr|S4RP24|S4RP24_PETMA 321 H-WVRAVAFSRDGLHVASLADDGLLRFW 347 4.6************985488******* PP == domain 7 score: 11.7 bits; conditional E-value: 0.0036 EEEEETTSSEEEEEETTSEEEEE CS WD40 15 slafspdgawlasGsdDgtvriW 37 ++afsp+g+ l++G Dg v +W tr|S4RP24|S4RP24_PETMA 366 CCAFSPNGHVLLAGRQDGGVGVW 388 999***********99**99999 PP >> tr|S4R6L2|S4R6L2_PETMA Beta-transducin repeat containing E3 ubiquitin protein ligase OS=Petromyzon marinus OX=7757 G # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.4 0.0 0.38 29 11 36 .. 271 294 .. 258 294 .. 0.73 2 ! 12.1 0.1 0.0029 0.22 24 38 .] 321 335 .. 301 335 .. 0.76 3 ! 10.9 0.1 0.0067 0.52 4 38 .] 342 375 .. 339 375 .. 0.73 4 ! 20.6 0.1 5.9e-06 0.00046 4 38 .] 385 418 .. 382 418 .. 0.84 5 ! 23.9 0.1 5.1e-07 3.9e-05 3 38 .] 424 458 .. 422 458 .. 0.84 6 ! 26.8 0.0 6.2e-08 4.8e-06 1 38 [] 462 498 .. 462 498 .. 0.86 7 ! 15.2 0.1 0.00029 0.023 3 38 .] 513 547 .. 512 547 .. 0.79 Alignments for each domain: == domain 1 score: 5.4 bits; conditional E-value: 0.38 SSEEEEEEETTSSEEEEEETTSEEEE CS WD40 11 ssvtslafspdgawlasGsdDgtvri 36 ++v++l + d ++sG +D+t+++ tr|S4R6L2|S4R6L2_PETMA 271 KGVYCL--QYDDEKIVSGLRDNTIKV 294 5599**..444444889*99****97 PP == domain 2 score: 12.1 bits; conditional E-value: 0.0029 EEEEEETTSEEEEEE CS WD40 24 wlasGsdDgtvriWd 38 ++++Gs D tvr+Wd tr|S4R6L2|S4R6L2_PETMA 321 YVFTGSSDSTVRVWD 335 6889*88*******9 PP == domain 3 score: 10.9 bits; conditional E-value: 0.0067 EEEEESS.SSEEEEEEETTSSE....EEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgaw....lasGsdDgtvriWd 38 + tl H v +l ++ ++++s+D+++ +Wd tr|S4R6L2|S4R6L2_PETMA 342 VNTLIHHcEAVLHL------RFtnglMVTCSKDRSIAVWD 375 56777785558888......444443789**********9 PP == domain 4 score: 20.6 bits; conditional E-value: 5.9e-06 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 r+l GH v+ + + d ++++s+s D+t+++W+ tr|S4R6L2|S4R6L2_PETMA 385 RRVLVGHrAAVNVV--DFDDKYIVSASGDRTIKVWN 418 57899**8888777..669999998877*******8 PP == domain 5 score: 23.9 bits; conditional E-value: 5.1e-07 EEEEEESS.SSEEEEEEETTSSE....EEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgaw....lasGsdDgtvriWd 38 +rtl GH ++ +l ++ ++sGs D+t+r+Wd tr|S4R6L2|S4R6L2_PETMA 424 FVRTLNGHkRGIACL------QYrdrlVVSGSSDNTIRLWD 458 689*****555****......66666589**99*******9 PP == domain 6 score: 26.8 bits; conditional E-value: 6.2e-08 TEEEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 1 gqclrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 g clr+l+GH v+++ d++ ++sG +Dg++++Wd tr|S4R6L2|S4R6L2_PETMA 462 GACLRVLEGHEElVRCI--RFDNKRIVSGAYDGKIKVWD 498 57********446****..55777799**99*******9 PP == domain 7 score: 15.2 bits; conditional E-value: 0.00029 EEEEEESSSS.EEEEEEETTSSE....EEEEETTSEEEEEE CS WD40 3 clrtltGHss.vtslafspdgaw....lasGsdDgtvriWd 38 clrtl Hs+ v l ++ ++s+s D t+ iWd tr|S4R6L2|S4R6L2_PETMA 513 CLRTLVEHSGrVFRL------QFdefqIVSSSHDDTILIWD 547 99******445****......555555556766*******9 PP >> tr|S4RN14|S4RN14_PETMA WD repeat domain 33 OS=Petromyzon marinus OX=7757 GN=WDR33 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.5 0.0 3 2.3e+02 13 38 .] 122 147 .. 100 147 .. 0.70 2 ! 11.0 0.2 0.0062 0.48 5 37 .. 155 188 .. 151 189 .. 0.89 3 ! 25.7 0.0 1.4e-07 1.1e-05 2 38 .] 193 230 .. 192 230 .. 0.94 4 ! 20.0 0.1 8.8e-06 0.00068 5 32 .. 238 266 .. 234 268 .. 0.91 5 ! 23.4 0.2 7.6e-07 5.9e-05 3 38 .] 280 316 .. 278 316 .. 0.92 6 ! 15.2 0.0 0.00029 0.023 3 37 .. 323 359 .. 321 360 .. 0.82 7 ! 16.7 1.5 9.8e-05 0.0076 9 37 .. 373 402 .. 366 403 .. 0.90 Alignments for each domain: == domain 1 score: 2.5 bits; conditional E-value: 3 EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriWd 38 v +++ p+g+ l++G g +W+ tr|S4RN14|S4RN14_PETMA 122 VFVVRWTPEGRRLVTGASSGEFTLWN 147 33455***********5599999997 PP == domain 2 score: 11.0 bits; conditional E-value: 0.0062 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvriW 37 ++l +H ssv+++ +s++ w+++++ g v+ W tr|S4RN14|S4RN14_PETMA 155 TILQAHdSSVRAMTWSHNDMWMLTADHGGFVKYW 188 5789**999***************9779999999 PP == domain 3 score: 25.7 bits; conditional E-value: 1.4e-07 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++++ + +H +++ +f p + +a++sdDgtvr+Wd tr|S4RN14|S4RN14_PETMA 193 NNVKMFQAHkEPIREASFAPTDNKFATCSDDGTVRVWD 230 68899****777*************************9 PP == domain 4 score: 20.0 bits; conditional E-value: 8.8e-06 EEEESS.SSEEEEEEETTSSEEEEEETTS CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDg 32 r+l+GH +v +++++p + +l+sGs+D tr|S4RN14|S4RN14_PETMA 238 RILRGHgADVKCVDWHPTKGLLVSGSKDS 266 89****888*****************995 PP == domain 5 score: 23.4 bits; conditional E-value: 7.6e-07 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 l tl +H + v ++++++g+wl+++s+D+ ++++d tr|S4RN14|S4RN14_PETMA 280 SLATLHAHkNTVMEVKWNQNGNWLLTASRDHLCKLFD 316 578999**888************************98 PP == domain 6 score: 15.2 bits; conditional E-value: 0.00029 EEEEEESS.SSEEEEEEETTSSE.EEEEETTSEEEEE CS WD40 3 clrtltGH.ssvtslafspdgaw.lasGsdDgtvriW 37 +++++GH + t++a++p + +asG+ Dg++ +W tr|S4RN14|S4RN14_PETMA 323 EVQIFRGHkKEATAVAWHPIHEGfFASGGSDGSLLFW 359 6899****888****877777774579977******* PP == domain 7 score: 16.7 bits; conditional E-value: 9.8e-05 SSSS.EEEEEEETTSSEEEEEETTSEEEEE CS WD40 9 GHss.vtslafspdgawlasGsdDgtvriW 37 +H + ++sla++p g+ l+sGs D+t ++W tr|S4RN14|S4RN14_PETMA 373 AHEGmIWSLAWHPLGHILCSGSNDHTSKFW 402 68556************************* PP >> tr|S4RN08|S4RN08_PETMA WD repeat domain 33 OS=Petromyzon marinus OX=7757 GN=WDR33 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.5 0.0 3 2.3e+02 13 38 .] 122 147 .. 100 147 .. 0.70 2 ! 11.0 0.2 0.0064 0.5 5 37 .. 155 188 .. 151 189 .. 0.89 3 ! 25.7 0.0 1.4e-07 1.1e-05 2 38 .] 193 230 .. 192 230 .. 0.94 4 ! 20.0 0.1 9e-06 0.0007 5 32 .. 238 266 .. 234 268 .. 0.91 5 ! 23.3 0.2 7.9e-07 6.1e-05 3 38 .] 280 316 .. 278 316 .. 0.92 6 ! 15.1 0.0 0.0003 0.023 3 37 .. 323 359 .. 321 360 .. 0.82 7 ! 16.7 1.5 0.0001 0.0078 9 37 .. 373 402 .. 366 403 .. 0.90 Alignments for each domain: == domain 1 score: 2.5 bits; conditional E-value: 3 EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriWd 38 v +++ p+g+ l++G g +W+ tr|S4RN08|S4RN08_PETMA 122 VFVVRWTPEGRRLVTGASSGEFTLWN 147 33455***********5599999997 PP == domain 2 score: 11.0 bits; conditional E-value: 0.0064 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvriW 37 ++l +H ssv+++ +s++ w+++++ g v+ W tr|S4RN08|S4RN08_PETMA 155 TILQAHdSSVRAMTWSHNDMWMLTADHGGFVKYW 188 5789**999***************9779999999 PP == domain 3 score: 25.7 bits; conditional E-value: 1.4e-07 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++++ + +H +++ +f p + +a++sdDgtvr+Wd tr|S4RN08|S4RN08_PETMA 193 NNVKMFQAHkEPIREASFAPTDNKFATCSDDGTVRVWD 230 68899****777*************************9 PP == domain 4 score: 20.0 bits; conditional E-value: 9e-06 EEEESS.SSEEEEEEETTSSEEEEEETTS CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDg 32 r+l+GH +v +++++p + +l+sGs+D tr|S4RN08|S4RN08_PETMA 238 RILRGHgADVKCVDWHPTKGLLVSGSKDS 266 89****888*****************995 PP == domain 5 score: 23.3 bits; conditional E-value: 7.9e-07 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 l tl +H + v ++++++g+wl+++s+D+ ++++d tr|S4RN08|S4RN08_PETMA 280 SLATLHAHkNTVMEVKWNQNGNWLLTASRDHLCKLFD 316 578999**888************************98 PP == domain 6 score: 15.1 bits; conditional E-value: 0.0003 EEEEEESS.SSEEEEEEETTSSE.EEEEETTSEEEEE CS WD40 3 clrtltGH.ssvtslafspdgaw.lasGsdDgtvriW 37 +++++GH + t++a++p + +asG+ Dg++ +W tr|S4RN08|S4RN08_PETMA 323 EVQIFRGHkKEATAVAWHPIHEGfFASGGSDGSLLFW 359 6899****888****877777774579977******* PP == domain 7 score: 16.7 bits; conditional E-value: 0.0001 SSSS.EEEEEEETTSSEEEEEETTSEEEEE CS WD40 9 GHss.vtslafspdgawlasGsdDgtvriW 37 +H + ++sla++p g+ l+sGs D+t ++W tr|S4RN08|S4RN08_PETMA 373 AHEGmIWSLAWHPLGHILCSGSNDHTSKFW 402 68556************************* PP >> tr|S4R5W5|S4R5W5_PETMA Uncharacterized protein OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.4 0.1 0.00054 0.042 8 37 .. 22 52 .. 17 53 .. 0.86 2 ! 19.0 0.0 1.8e-05 0.0014 4 37 .. 60 94 .. 58 95 .. 0.92 3 ! 12.9 0.5 0.0015 0.12 2 38 .] 107 143 .. 106 143 .. 0.74 4 ! 20.3 0.0 7.4e-06 0.00057 1 38 [] 147 197 .. 147 197 .. 0.61 5 ! 24.7 0.0 3e-07 2.3e-05 3 38 .] 202 238 .. 200 238 .. 0.93 6 ! 15.3 0.1 0.00027 0.021 2 33 .. 324 354 .] 323 354 .] 0.78 Alignments for each domain: == domain 1 score: 14.4 bits; conditional E-value: 0.00054 ESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 8 tGH.ssvtslafspdgawlasGsdDgtvriW 37 + H ++v++ ++s+dg +l++G++D +W tr|S4R5W5|S4R5W5_PETMA 22 EVHkGGVCCASVSDDGELLLTGGEDARAALW 52 579667*******************888888 PP == domain 2 score: 19.0 bits; conditional E-value: 1.8e-05 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 l +l+GH vt++a pd + +++s D vr+W tr|S4R5W5|S4R5W5_PETMA 60 LAVLEGHeAYVTDCALAPDTSRAFTCSADFAVRVW 94 57899**777************99*********** PP == domain 3 score: 12.9 bits; conditional E-value: 0.0015 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +c ++l GH v+ l ++ + s s D+tvr Wd tr|S4R5W5|S4R5W5_PETMA 107 SCAHVLHGHtARVNRLLVHAGRSV-YSTSADRTVRRWD 143 5899*****666****44444444.45566*******9 PP == domain 4 score: 20.3 bits; conditional E-value: 7.4e-06 TEEEEEEESS.SSE..EEEE..........EETTSSEEEEEETTSEEEEEE CS WD40 1 gqclrtltGH.ssv..tsla..........fspdgawlasGsdDgtvriWd 38 g+cl +++GH ++v +l p +a la+Gs+Dgtvr+Wd tr|S4R5W5|S4R5W5_PETMA 147 GSCLAVCEGHtGNVlpLALYlpeggpdnadEVPGQAVLAAGSMDGTVRLWD 197 57888888885555344553444333333333333559************9 PP == domain 5 score: 24.7 bits; conditional E-value: 3e-07 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 l+ l+GH ++v +la+ ++ a l+sGs Dgtvr Wd tr|S4R5W5|S4R5W5_PETMA 202 ALHCLEGHaGPVLCLAVLQNRAALFSGSADGTVRRWD 238 6899****999*************************9 PP == domain 6 score: 15.3 bits; conditional E-value: 0.00027 EEEEEEESSSS.EEEEEEETTSSEEEEEETTSE CS WD40 2 qclrtltGHss.vtslafspdgawlasGsdDgt 33 + +rt++GH++ v+++++ g+ l++Gs Dg+ tr|S4R5W5|S4R5W5_PETMA 324 EVMRTFKGHNHiVNCMKV--AGDTLFTGSQDGS 354 6799*****9967***55..4555669**9996 PP >> tr|S4RSZ8|S4RSZ8_PETMA Coatomer subunit beta' OS=Petromyzon marinus OX=7757 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.2 0.0 0.00059 0.046 8 38 .] 12 43 .. 6 43 .. 0.83 2 ? 9.7 0.0 0.016 1.2 13 38 .] 60 85 .. 47 85 .. 0.81 3 ! 29.7 0.0 7.4e-09 5.7e-07 4 38 .] 92 127 .. 89 127 .. 0.92 4 ! 17.9 0.1 4.1e-05 0.0032 1 37 [. 132 170 .. 132 171 .. 0.86 5 ! 28.0 0.0 2.7e-08 2.1e-06 3 38 .] 177 215 .. 175 215 .. 0.90 6 ? 2.8 0.0 2.4 1.9e+02 16 32 .. 356 371 .. 347 375 .. 0.87 Alignments for each domain: == domain 1 score: 14.2 bits; conditional E-value: 0.00059 ESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 8 tGHss.vtslafspdgawlasGsdDgtvriWd 38 t+ s+ v +++ +p+ +w++++ ++g+v +W+ tr|S4RSZ8|S4RSZ8_PETMA 12 TARSDrVKCVDLHPSEPWMLASLYNGSVCVWN 43 5554459************99967*******8 PP == domain 2 score: 9.7 bits; conditional E-value: 0.016 EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriWd 38 v++ +f ++w+++GsdD +r+++ tr|S4RSZ8|S4RSZ8_PETMA 60 VRAAKFVARKNWMVAGSDDMQIRVFN 85 6777788899**************97 PP == domain 3 score: 29.7 bits; conditional E-value: 7.4e-09 EEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 ++ +++Hs+ ++++a++p++++l+++sdD +++Wd tr|S4RSZ8|S4RSZ8_PETMA 92 VHMFEAHSDyIRCIAVHPSQPFLLTSSDDMLIKLWD 127 799****556*************************9 PP == domain 4 score: 17.9 bits; conditional E-value: 4.1e-05 TEEEEEEESSSS.EEEEE.EETTSSEEEEEETTSEEEEE CS WD40 1 gqclrtltGHss.vtsla.fspdgawlasGsdDgtvriW 37 ++c ++++GH++ v + +++d++ +as+s D+t+++W tr|S4RSZ8|S4RSZ8_PETMA 132 WTCSQVFEGHTHyVMQIViNPKDNNQFASASLDRTIKVW 170 6799******66797777688888889************ PP == domain 5 score: 28.0 bits; conditional E-value: 2.7e-08 EEEEEESS.SSEEEEE..EETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtsla..fspdgawlasGsdDgtvriWd 38 + tl+GH ++v++++ d+++l+sG dD+ v+iWd tr|S4RSZ8|S4RSZ8_PETMA 177 PNFTLEGHeKGVNCVDyySGGDKPYLISGADDRLVKIWD 215 56799***********888888888*************9 PP == domain 6 score: 2.8 bits; conditional E-value: 2.4 EEEETTSSEEEEEETTS CS WD40 16 lafspdgawlasGsdDg 32 ++ +p+g++++ ++ Dg tr|S4RSZ8|S4RSZ8_PETMA 356 ISHNPNGRFVVVCG-DG 371 6789******9999.87 PP >> tr|S4RZE6|S4RZE6_PETMA Serine/threonine kinase receptor associated protein OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.7 0.0 0.034 2.6 5 33 .. 8 40 .. 4 43 .. 0.82 2 ! 12.7 0.2 0.0018 0.14 4 38 .] 52 87 .. 49 87 .. 0.89 3 ! 16.0 0.1 0.00017 0.013 6 38 .] 96 128 .. 91 128 .. 0.87 4 ! 16.9 0.0 8.7e-05 0.0067 7 38 .] 139 170 .. 135 170 .. 0.85 5 ? 4.4 0.0 0.77 60 4 34 .. 217 247 .. 214 251 .. 0.81 6 ! 39.7 0.0 5.3e-12 4.1e-10 2 37 .. 256 292 .. 255 293 .. 0.93 Alignments for each domain: == domain 1 score: 8.7 bits; conditional E-value: 0.034 EEEESS.SSEEEEE...EETTSSEEEEEETTSE CS WD40 5 rtltGH.ssvtsla...fspdgawlasGsdDgt 33 t++GH +v +la p+g +++s+++Dg+ tr|S4RZE6|S4RZE6_PETMA 8 LTCSGHtRPVVDLAfstITPYGYFMISACKDGK 40 5789**77799***8888888888999999995 PP == domain 2 score: 12.7 bits; conditional E-value: 0.0018 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++t+ GH + v++ ++d + a++ D t ++Wd tr|S4RZE6|S4RZE6_PETMA 52 VGTFLGHkGAVWGATLNRDATKAATAAADFTAKVWD 87 68999**655*************99988*******9 PP == domain 3 score: 16.0 bits; conditional E-value: 0.00017 EEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 6 tltGHss.vtslafspdgawlasGsdDgtvriWd 38 ++ +H++ v ++f d+ l++G+ D+ +ri+d tr|S4RZE6|S4RZE6_PETMA 96 SF-THKHiVKTVDFTEDSVHLLTGGQDKVLRIYD 128 56.498856************************8 PP == domain 4 score: 16.9 bits; conditional E-value: 8.7e-05 EESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 7 ltGH.ssvtslafspdgawlasGsdDgtvriWd 38 l+GH s+v+ ++ ++++s dD+t+r+Wd tr|S4RZE6|S4RZE6_PETMA 139 LSGHtSGVRRA-WCTGEKLIISVADDKTIRLWD 170 78**8889766.8888899998899*******9 PP == domain 5 score: 4.4 bits; conditional E-value: 0.77 EEEEESSSSEEEEEEETTSSEEEEEETTSEE CS WD40 4 lrtltGHssvtslafspdgawlasGsdDgtv 34 ++ +++ s++s + +p++ +++G++D ++ tr|S4RZE6|S4RZE6_PETMA 217 IKQFEASASINSASLHPEKECFIAGGEDFKL 247 556666667*****************99776 PP == domain 6 score: 39.7 bits; conditional E-value: 5.3e-12 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 + l +++GH ++v++++fspdg + asGs+Dgt+r+W tr|S4RZE6|S4RZE6_PETMA 256 EELESYKGHfGPVHCVRFSPDGELYASGSEDGTLRLW 292 67889****888************************* PP >> tr|S4RF70|S4RF70_PETMA Angio-associated, migratory cell protein OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 10.7 0.0 0.0078 0.61 7 37 .. 59 91 .. 55 92 .. 0.83 2 ! 23.4 0.5 7.4e-07 5.7e-05 3 38 .] 98 134 .. 96 134 .. 0.90 3 ! 17.4 0.0 5.7e-05 0.0044 17 38 .] 192 215 .. 180 215 .. 0.81 4 ! 24.6 0.5 3.1e-07 2.4e-05 3 34 .. 221 256 .. 219 258 .. 0.84 5 ! 11.1 0.1 0.006 0.46 11 38 .] 295 322 .. 286 322 .. 0.89 6 ? 8.2 0.0 0.049 3.8 13 38 .] 338 363 .. 324 363 .. 0.78 7 ! 14.4 0.0 0.00053 0.041 7 37 .. 373 404 .. 369 405 .. 0.90 Alignments for each domain: == domain 1 score: 10.7 bits; conditional E-value: 0.0078 EESS.SSEEEEEEETTSSEEE.EEETTSEEEEE CS WD40 7 ltGH.ssvtslafspdgawla.sGsdDgtvriW 37 + H + v ++a +p ++ la +G++D ++W tr|S4RF70|S4RF70_PETMA 59 VKKHkGAVFCVALDPKSNALAvTGGEDDLAYVW 91 5679555*****99999999769*****99999 PP == domain 2 score: 23.4 bits; conditional E-value: 7.4e-07 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 l +tGH +svt+ fs+d++++a+G++ g +++W+ tr|S4RF70|S4RF70_PETMA 98 ILFPCTGHkDSVTCTGFSHDSSMVATGDMSGLIKVWS 134 677899**777****************99*******5 PP == domain 3 score: 17.4 bits; conditional E-value: 5.7e-05 E..EETTSSEEEEEETTSEEEEEE CS WD40 17 a..fspdgawlasGsdDgtvriWd 38 + pdg+ + G +DgtvriWd tr|S4RF70|S4RF70_PETMA 192 CgkIFPDGKVAVVGYEDGTVRIWD 215 46689*****999**********9 PP == domain 4 score: 24.6 bits; conditional E-value: 3.1e-07 EEEEEE...SS.SSEEEEEEETTSSEEEEEETTSEE CS WD40 3 clrtlt...GH.ssvtslafspdgawlasGsdDgtv 34 ++ t++ GH +svt++a+++dg+++++Gs D+t tr|S4RF70|S4RF70_PETMA 221 PVFTFKgkdGHqGSVTCVAVHDDGTLVLTGSVDRTA 256 5667755569*888********************95 PP == domain 5 score: 11.1 bits; conditional E-value: 0.006 SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 11 ssvtslafspdgawlasGsdDgtvriWd 38 +sv s+ f++ ++++a G Dgt+ iWd tr|S4RF70|S4RF70_PETMA 295 NSVESVGFCKVHPLIAVGYLDGTLVIWD 322 679999999999******99*******9 PP == domain 6 score: 8.2 bits; conditional E-value: 0.049 EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriWd 38 v l+++ ++a l+ +s Dg vr++d tr|S4RF70|S4RF70_PETMA 338 VVKLQWDLSSATLFVCSLDGRVRLYD 363 567878889999999999******98 PP == domain 7 score: 14.4 bits; conditional E-value: 0.00053 EESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 7 ltGH.ssvtslafspdgawlasGsdDgtvriW 37 l GH + v ++a s+d+++l+++s D+t +++ tr|S4RF70|S4RF70_PETMA 373 LQGHrGEVLDFALSRDSSMLVTASGDHTAKVF 404 68**888**************9988***9996 PP >> tr|S4RH39|S4RH39_PETMA Ribosome biogenesis protein BOP1 OS=Petromyzon marinus OX=7757 GN=BOP1 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 37.7 0.4 2.2e-11 1.7e-09 6 37 .. 279 311 .. 274 312 .. 0.90 2 ? 2.4 0.0 3.2 2.5e+02 8 36 .. 325 352 .. 316 354 .. 0.68 3 ? 5.9 0.0 0.25 20 5 27 .. 399 422 .. 395 431 .. 0.83 4 ! 10.4 0.1 0.0097 0.75 11 34 .. 492 515 .. 482 519 .. 0.86 5 ! 15.0 0.0 0.00033 0.026 3 34 .. 526 558 .. 524 560 .. 0.88 6 ! 26.3 0.1 9.1e-08 7e-06 3 38 .] 577 617 .] 575 617 .] 0.82 Alignments for each domain: == domain 1 score: 37.7 bits; conditional E-value: 2.2e-11 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 6 tltGH.ssvtslafspdgawlasGsdDgtvriW 37 +++GH + v++++++p g+wl+sGsdD++vr+W tr|S4RH39|S4RH39_PETMA 279 IYKGHtNLVRCISTDPTGQWLVSGSDDCSVRFW 311 799**555************************* PP == domain 2 score: 2.4 bits; conditional E-value: 3.2 ESSSSEEEEEEETTSSEEEEE.ETTSEEEE CS WD40 8 tGHssvtslafspdgawlasG.sdDgtvri 36 +G v s+a++p+ ++ + + + ++ v+i tr|S4RH39|S4RH39_PETMA 325 EGA--VKSIAWNPNPSLCLVAfTVNNVVKI 352 344..99********996656456777776 PP == domain 3 score: 5.9 bits; conditional E-value: 0.25 EEEESS.SSEEEEEEETTSSEEEE CS WD40 5 rtltGH.ssvtslafspdgawlas 27 r l H +sv+ l+++ g++l+s tr|S4RH39|S4RH39_PETMA 399 RLLIQHpKSVRQLSWHGRGDYLVS 422 55778*999*************97 PP == domain 4 score: 10.4 bits; conditional E-value: 0.0097 SSEEEEEEETTSSEEEEEETTSEE CS WD40 11 ssvtslafspdgawlasGsdDgtv 34 ++v+s+a++p g+ +++Gs+D+ + tr|S4RH39|S4RH39_PETMA 492 KWVSSVAVHPGGDNVICGSYDRRL 515 679******************975 PP == domain 5 score: 15.0 bits; conditional E-value: 0.00033 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtv 34 + ++l+ H + v++++f++ +++as+sdDg v tr|S4RH39|S4RH39_PETMA 526 PYKVLRHHkKAVRAVCFHKRYPLFASASDDGGV 558 66789999888*******************976 PP == domain 6 score: 26.3 bits; conditional E-value: 9.1e-08 EEEEEESSSS......EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGHss......vtslafspdgawlasGsdDgtvriWd 38 ++++l+GH v ++ f+p+++w++s++ D t+r+W+ tr|S4RH39|S4RH39_PETMA 577 PVKVLKGH-QvmrdlgVLDVIFHPSQPWVFSAGSDATIRLWS 617 7899****.334568899999*******986545*******5 PP >> tr|S4RKZ7|S4RKZ7_PETMA WD repeat domain 37 OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.6 0.0 0.017 1.3 2 38 .] 152 190 .. 151 190 .. 0.81 2 ! 25.7 0.4 1.4e-07 1.1e-05 1 37 [. 194 231 .. 194 232 .. 0.92 3 ! 11.4 0.0 0.0047 0.37 3 38 .] 281 317 .. 279 317 .. 0.86 4 ! 28.3 0.2 2.1e-08 1.6e-06 2 38 .] 322 359 .. 321 359 .. 0.94 5 ! 26.0 0.8 1.1e-07 8.5e-06 4 38 .] 368 402 .. 365 402 .. 0.85 6 ? 5.6 0.0 0.31 24 4 38 .] 410 444 .. 405 444 .. 0.80 Alignments for each domain: == domain 1 score: 9.6 bits; conditional E-value: 0.017 EEEEEEESS.SSEEEEEEETTSSEEE.EEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawla.sGsdDgtvriWd 38 q+++++ GH ++ +++a + + ++ ++s D+t ++W+ tr|S4RKZ7|S4RKZ7_PETMA 152 QLQKEYAGHrDGLWDVAATRIAPVVLgTASADHTAMLWS 190 78999****9999999766666677755688*******5 PP == domain 2 score: 25.7 bits; conditional E-value: 1.4e-07 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 g+c+ ++ GH +sv+s++f+p ++ +++s D++ ++W tr|S4RKZ7|S4RKZ7_PETMA 194 GKCILKYVGHaGSVNSIKFHPTDQLALTASGDHSAHVW 231 69********999************887766******* PP == domain 3 score: 11.4 bits; conditional E-value: 0.0047 EEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 +++ l+GH++ + + ++ g+ l+++s+D+t ++d tr|S4RKZ7|S4RKZ7_PETMA 281 PVTALKGHQGvIIAADWLVGGKQLITASWDRTANVYD 317 67789***77557**99999999*********99998 PP == domain 4 score: 28.3 bits; conditional E-value: 2.1e-08 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++l++ltGH + t+++++p +++++++s+D t r+Wd tr|S4RKZ7|S4RKZ7_PETMA 322 ELLHSLTGHdQELTHCSTHPAQRLVVTSSRDTTFRLWD 359 689******777*************************9 PP == domain 5 score: 26.0 bits; conditional E-value: 1.1e-07 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 + ++ GH + vts f ++ + + sGsdD+tv++Wd tr|S4RKZ7|S4RKZ7_PETMA 368 VNVFQGHtDTVTSAVFASSENVV-SGSDDRTVKVWD 402 56899**666*999888888886.8**********9 PP == domain 6 score: 5.6 bits; conditional E-value: 0.31 EEEEESSSSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGHssvtslafspdgawlasGsdDgtvriWd 38 + t+++ s v+ l++sp ++ +a +d+++vr++d tr|S4RKZ7|S4RKZ7_PETMA 410 IATIRTDSAVNRLSVSPTHKIIALPHDNRHVRLFD 444 555555566************9656********98 PP >> tr|S4RKZ5|S4RKZ5_PETMA WD repeat domain 37 OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.6 0.0 0.017 1.3 2 38 .] 152 190 .. 151 190 .. 0.81 2 ! 25.7 0.4 1.4e-07 1.1e-05 1 37 [. 194 231 .. 194 232 .. 0.92 3 ! 11.4 0.0 0.0048 0.37 3 38 .] 284 320 .. 282 320 .. 0.86 4 ! 28.3 0.2 2.1e-08 1.6e-06 2 38 .] 325 362 .. 324 362 .. 0.94 5 ! 26.0 0.8 1.1e-07 8.6e-06 4 38 .] 371 405 .. 368 405 .. 0.85 6 ? 5.6 0.0 0.31 24 4 38 .] 413 447 .. 408 447 .. 0.80 Alignments for each domain: == domain 1 score: 9.6 bits; conditional E-value: 0.017 EEEEEEESS.SSEEEEEEETTSSEEE.EEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawla.sGsdDgtvriWd 38 q+++++ GH ++ +++a + + ++ ++s D+t ++W+ tr|S4RKZ5|S4RKZ5_PETMA 152 QLQKEYAGHrDGLWDVAATRIAPVVLgTASADHTAMLWS 190 78999****9999999766666677755688*******5 PP == domain 2 score: 25.7 bits; conditional E-value: 1.4e-07 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 g+c+ ++ GH +sv+s++f+p ++ +++s D++ ++W tr|S4RKZ5|S4RKZ5_PETMA 194 GKCILKYVGHaGSVNSIKFHPTDQLALTASGDHSAHVW 231 69********999************887766******* PP == domain 3 score: 11.4 bits; conditional E-value: 0.0048 EEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 +++ l+GH++ + + ++ g+ l+++s+D+t ++d tr|S4RKZ5|S4RKZ5_PETMA 284 PVTALKGHQGvIIAADWLVGGKQLITASWDRTANVYD 320 67789***77557**99999999*********99998 PP == domain 4 score: 28.3 bits; conditional E-value: 2.1e-08 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++l++ltGH + t+++++p +++++++s+D t r+Wd tr|S4RKZ5|S4RKZ5_PETMA 325 ELLHSLTGHdQELTHCSTHPAQRLVVTSSRDTTFRLWD 362 689******777*************************9 PP == domain 5 score: 26.0 bits; conditional E-value: 1.1e-07 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 + ++ GH + vts f ++ + + sGsdD+tv++Wd tr|S4RKZ5|S4RKZ5_PETMA 371 VNVFQGHtDTVTSAVFASSENVV-SGSDDRTVKVWD 405 56899**666*999888888886.8**********9 PP == domain 6 score: 5.6 bits; conditional E-value: 0.31 EEEEESSSSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGHssvtslafspdgawlasGsdDgtvriWd 38 + t+++ s v+ l++sp ++ +a +d+++vr++d tr|S4RKZ5|S4RKZ5_PETMA 413 IATIRTDSAVNRLSVSPTHKIIALPHDNRHVRLFD 447 555555566************9656********98 PP >> tr|S4RRY9|S4RRY9_PETMA WD repeat domain 48a OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 11.2 0.0 0.0055 0.42 12 38 .] 32 58 .. 27 58 .. 0.86 2 ! 17.6 1.0 5.2e-05 0.004 8 38 .] 72 103 .. 67 103 .. 0.82 3 ! 18.9 0.0 2e-05 0.0015 3 38 .] 109 145 .. 107 145 .. 0.93 4 ! 16.0 0.0 0.00016 0.013 4 38 .] 161 196 .. 158 196 .. 0.92 5 ! 24.0 0.1 4.8e-07 3.7e-05 4 38 .] 203 238 .. 200 238 .. 0.90 6 ! 10.5 0.0 0.009 0.7 2 35 .. 243 277 .. 242 280 .. 0.89 Alignments for each domain: == domain 1 score: 11.2 bits; conditional E-value: 0.0055 SEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 12 svtslafspdgawlasGsdDgtvriWd 38 +v++l+ +++ + l+++++D vriW+ tr|S4RRY9|S4RRY9_PETMA 32 GVNALQLDHSLNRLFTAGRDSIVRIWN 58 5888888888899999999*******8 PP == domain 2 score: 17.6 bits; conditional E-value: 5.2e-05 ESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 8 tGH.ssvtslafspdgawlasGsdDgtvriWd 38 + H ++v+++ + +g+ l+s+s D tv++W+ tr|S4RRY9|S4RRY9_PETMA 72 EHHtDWVNDVVLCCNGRTLISASSDTTVKVWN 103 56866688888888*****99988*******8 PP == domain 3 score: 18.9 bits; conditional E-value: 2e-05 EEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 c+ tl++H++ v +la+ +d+ +as++ D+ + +Wd tr|S4RRY9|S4RRY9_PETMA 109 CMSTLRTHKDyVKALAYAKDKEQVASAGLDRQIFLWD 145 999*****666**************9999*******9 PP == domain 4 score: 16.0 bits; conditional E-value: 0.00016 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 + +l+G +s++sla ++ g+ ++sGs + +r+Wd tr|S4RRY9|S4RRY9_PETMA 161 TSSLSGNkDSIYSLAMNQMGTIIVSGSTEKVLRVWD 196 56899**777*************************9 PP == domain 5 score: 24.0 bits; conditional E-value: 4.8e-07 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 l +l+GH ++v +l ++dg+ +sGs Dgt+r+W+ tr|S4RRY9|S4RRY9_PETMA 203 LMKLKGHtDNVKALLLNRDGTQCLSGSSDGTIRLWS 238 7789***766****************99*******5 PP == domain 6 score: 10.5 bits; conditional E-value: 0.009 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvr 35 +c+ t++ H +v++l++++ + + sG++D++v+ tr|S4RRY9|S4RRY9_PETMA 243 RCIATYRVHdEGVWALQVNDTFTQVYSGGRDRKVY 277 79*******777****98888888********996 PP >> tr|S4RRY8|S4RRY8_PETMA WD repeat domain 48a OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 11.2 0.0 0.0055 0.43 12 38 .] 32 58 .. 27 58 .. 0.86 2 ! 17.6 1.0 5.2e-05 0.004 8 38 .] 72 103 .. 67 103 .. 0.82 3 ! 18.9 0.0 2e-05 0.0015 3 38 .] 109 145 .. 107 145 .. 0.93 4 ! 16.0 0.0 0.00016 0.013 4 38 .] 161 196 .. 158 196 .. 0.92 5 ! 24.0 0.1 4.8e-07 3.7e-05 4 38 .] 203 238 .. 200 238 .. 0.90 6 ! 10.5 0.0 0.009 0.7 2 35 .. 243 277 .. 242 280 .. 0.89 Alignments for each domain: == domain 1 score: 11.2 bits; conditional E-value: 0.0055 SEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 12 svtslafspdgawlasGsdDgtvriWd 38 +v++l+ +++ + l+++++D vriW+ tr|S4RRY8|S4RRY8_PETMA 32 GVNALQLDHSLNRLFTAGRDSIVRIWN 58 5888888888899999999*******8 PP == domain 2 score: 17.6 bits; conditional E-value: 5.2e-05 ESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 8 tGH.ssvtslafspdgawlasGsdDgtvriWd 38 + H ++v+++ + +g+ l+s+s D tv++W+ tr|S4RRY8|S4RRY8_PETMA 72 EHHtDWVNDVVLCCNGRTLISASSDTTVKVWN 103 56866688888888*****99988*******8 PP == domain 3 score: 18.9 bits; conditional E-value: 2e-05 EEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 c+ tl++H++ v +la+ +d+ +as++ D+ + +Wd tr|S4RRY8|S4RRY8_PETMA 109 CMSTLRTHKDyVKALAYAKDKEQVASAGLDRQIFLWD 145 999*****666**************9999*******9 PP == domain 4 score: 16.0 bits; conditional E-value: 0.00016 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 + +l+G +s++sla ++ g+ ++sGs + +r+Wd tr|S4RRY8|S4RRY8_PETMA 161 TSSLSGNkDSIYSLAMNQMGTIIVSGSTEKVLRVWD 196 56899**777*************************9 PP == domain 5 score: 24.0 bits; conditional E-value: 4.8e-07 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 l +l+GH ++v +l ++dg+ +sGs Dgt+r+W+ tr|S4RRY8|S4RRY8_PETMA 203 LMKLKGHtDNVKALLLNRDGTQCLSGSSDGTIRLWS 238 7789***766****************99*******5 PP == domain 6 score: 10.5 bits; conditional E-value: 0.009 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvr 35 +c+ t++ H +v++l++++ + + sG++D++v+ tr|S4RRY8|S4RRY8_PETMA 243 RCIATYRVHdEGVWALQVNDTFTQVYSGGRDRKVY 277 79*******777****98888888********996 PP >> tr|S4RJQ9|S4RJQ9_PETMA WD repeat domain 26a OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.6 0.2 7.3e-08 5.6e-06 5 38 .] 94 128 .. 91 128 .. 0.94 2 ! 15.9 0.1 0.00018 0.014 5 32 .. 140 169 .. 136 176 .. 0.80 3 ! 11.4 0.3 0.0045 0.35 9 29 .. 189 210 .. 180 255 .. 0.92 4 ! 12.0 0.0 0.003 0.23 21 37 .. 327 343 .. 305 344 .. 0.76 5 ! 34.0 0.1 3.3e-10 2.6e-08 3 37 .. 350 385 .. 348 385 .. 0.92 Alignments for each domain: == domain 1 score: 26.6 bits; conditional E-value: 7.3e-08 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++lt H + v+ ++fs dg+ la+Gs+D tv +Wd tr|S4RJQ9|S4RJQ9_PETMA 94 QILTEHcNEVWFCKFSNDGSKLATGSKDSTVILWD 128 67999*888*************************9 PP == domain 2 score: 15.9 bits; conditional E-value: 0.00018 EEEESS.SSEEEEEEETTSSEEEEEE.TTS CS WD40 5 rtltGH.ssvtslafspdgawlasGs.dDg 32 rtl+GH +v+ la+spd a l++++ dD+ tr|S4RJQ9|S4RJQ9_PETMA 140 RTLEGHtYGVSYLAWSPDDAHLIACGpDDC 169 89****655*************99984444 PP == domain 3 score: 11.4 bits; conditional E-value: 0.0045 SS.SSEEEEEEETTSSEEEEEE CS WD40 9 GH.ssvtslafspdgawlasGs 29 H +s t+ a++pdg+ +++G+ tr|S4RJQ9|S4RJQ9_PETMA 189 SHeDSLTCAAWNPDGKRFVTGG 210 69888****************8 PP == domain 4 score: 12.0 bits; conditional E-value: 0.003 TSSEEEEEETTSEEEEE CS WD40 21 dgawlasGsdDgtvriW 37 + +++asGs+D++v++W tr|S4RJQ9|S4RJQ9_PETMA 327 HEDFIASGSEDHKVYVW 343 5678************* PP == domain 5 score: 34.0 bits; conditional E-value: 3.3e-10 EEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEE CS WD40 3 clrtltGHss.vtslafspdgawlasGsdDgtvriW 37 ++ +l GHs+ v++++++p ++las+sdDgtvriW tr|S4RJQ9|S4RJQ9_PETMA 350 PIAVLAGHSHtVNCVSWNPRLPMLASASDDGTVRIW 385 567899**778************************* PP >> tr|S4RVI8|S4RVI8_PETMA Elongator acetyltransferase complex subunit 2 OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.1 0.1 0.012 0.92 4 37 .. 49 88 .. 46 89 .. 0.73 2 ! 15.6 0.0 0.00022 0.017 3 37 .. 97 140 .. 95 140 .. 0.74 3 ! 13.7 0.0 0.00086 0.067 5 37 .. 264 300 .. 260 301 .. 0.75 4 ! 11.5 0.0 0.0042 0.32 5 38 .] 345 388 .. 341 388 .. 0.86 5 ? 7.0 0.0 0.11 8.6 6 36 .. 451 483 .. 446 485 .. 0.72 6 ? 8.6 0.0 0.035 2.7 4 38 .] 633 673 .. 630 673 .. 0.77 7 ! 16.7 0.7 0.0001 0.0078 4 37 .. 680 714 .. 677 715 .. 0.84 8 ! 15.7 1.9 0.00021 0.016 10 37 .. 741 769 .. 733 769 .. 0.89 9 ? 3.5 0.1 1.5 1.1e+02 21 38 .] 877 896 .. 870 896 .. 0.82 Alignments for each domain: == domain 1 score: 10.1 bits; conditional E-value: 0.012 EEEEESS.SSEEEEEEETTSSE.....EEEEETTSEEEEE CS WD40 4 lrtltGH.ssvtslafspdgaw.....lasGsdDgtvriW 37 + tl H + v+++ + + +++ l+sG+ D+ +W tr|S4RVI8|S4RVI8_PETMA 49 VNTLNEHtQRVNCVHWIQKNDLspeteLLSGGSDNIAILW 88 678999*777****8444444466666567866**99999 PP == domain 2 score: 15.6 bits; conditional E-value: 0.00022 EEEEEESS.SSEEEEE........EETTSSEEEEEETTSEEEEE CS WD40 3 clrtltGH.ssvtsla........fspdgawlasGsdDgtvriW 37 c +l GH + vt+++ pd +l+++ D tvriW tr|S4RVI8|S4RVI8_PETMA 97 CSEKLQGHkGAVTAVDgrslasrrDEPDVVMLVTSAADSTVRIW 140 677899**655****6666666665555566777877******* PP == domain 3 score: 13.7 bits; conditional E-value: 0.00086 EEEESS.SSEEEEE..EETTSSE.EEEEETTSEEEEE CS WD40 5 rtltGH.ssvtsla..fspdgaw.lasGsdDgtvriW 37 + l GH +++ +l + g++ las+s D+ +r+W tr|S4RVI8|S4RVI8_PETMA 264 QLLVGHeDWIQGLEfvQEDGGDLlLASCSQDCMIRLW 300 45679*8889999666555555546799********* PP == domain 4 score: 11.5 bits; conditional E-value: 0.0042 EEEESS.SSEEEEEEETTSSE.........EEEEETTSEEEEEE CS WD40 5 rtltGH.ssvtslafspdgaw.........lasGsdDgtvriWd 38 +l GH + v+++ ++p + l+s+s+D+t iW+ tr|S4RVI8|S4RVI8_PETMA 345 AVLAGHeNRVYGVHWQPASIQdgkrsqpmnLLSASMDKTMIIWS 388 5788**999****77777777*********889999*******5 PP == domain 5 score: 7.0 bits; conditional E-value: 0.11 EEESS.SSEEEEEEETTSSE..EEEEETTSEEEE CS WD40 6 tltGH.ssvtslafspdgaw..lasGsdDgtvri 36 +++GH ++v +l++ p++ l+ +s D+t r+ tr|S4RVI8|S4RVI8_PETMA 451 VISGHfGPVQDLCWEPEKGGyiLSVSS-DQTTRL 483 679**888****877766556454556.998887 PP == domain 6 score: 8.6 bits; conditional E-value: 0.035 EEEEESSSS.EEEEEEETTSSEEEEEET.....TSEEEEEE CS WD40 4 lrtltGHss.vtslafspdgawlasGsd.....DgtvriWd 38 +++l GH+ v s+a +p g+++as+++ t+ +Wd tr|S4RVI8|S4RVI8_PETMA 633 VQKLYGHGYeVFSVAAHPAGSLVASSCKaskpeHATILLWD 673 67889**446*************988644445577777777 PP == domain 7 score: 16.7 bits; conditional E-value: 0.0001 EEEEESSSS..EEEEEEETTSSEEEEEETTSEEEEE CS WD40 4 lrtltGHss..vtslafspdgawlasGsdDgtvriW 37 +++l+ H + vt lafspdg+ l++ s+D+t +W tr|S4RVI8|S4RVI8_PETMA 680 VGILSYH-GltVTQLAFSPDGSCLLAVSRDRTWSLW 714 5667778.345**************99********* PP == domain 8 score: 15.7 bits; conditional E-value: 0.00021 SSS.EEEEEEETTSSEEEEEETTSEEEEE CS WD40 10 Hss.vtslafspdgawlasGsdDgtvriW 37 H+ ++++++s+dg+++++ s+D++v +W tr|S4RVI8|S4RVI8_PETMA 741 HTRvIWACDWSHDGKYFTTTSRDKKVVVW 769 75557*************99********* PP == domain 9 score: 3.5 bits; conditional E-value: 1.5 TSSE..EEEEETTSEEEEEE CS WD40 21 dgaw..lasGsdDgtvriWd 38 d aw las++ D vri+d tr|S4RVI8|S4RVI8_PETMA 877 DEAWlqLASAGADSAVRIFD 896 567844688888******98 PP >> tr|S4RW84|S4RW84_PETMA WD repeat domain 82 OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.4 0.0 1.3e-05 0.001 6 38 .] 16 49 .. 11 49 .. 0.87 2 ! 24.0 0.0 4.7e-07 3.6e-05 4 38 .] 100 135 .. 97 135 .. 0.90 3 ? 2.5 0.0 2.9 2.2e+02 13 35 .. 197 219 .. 184 222 .. 0.78 4 ! 31.2 0.2 2.5e-09 1.9e-07 2 37 .. 227 266 .. 226 267 .. 0.87 5 ? 8.7 0.0 0.034 2.6 10 29 .. 281 301 .. 271 305 .. 0.76 Alignments for each domain: == domain 1 score: 19.4 bits; conditional E-value: 1.3e-05 EEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 6 tltGHss.vtslafspdgawlasGsdDgtvriWd 38 +++ s+ +++++f p+g ++s+sdD ++ ++d tr|S4RW84|S4RW84_PETMA 16 VFRENSDkINCFDFAPNGETMISSSDDDSIVLYD 49 67777456***********************998 PP == domain 2 score: 24.0 bits; conditional E-value: 4.7e-07 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +r + GH + v +l+ sp + ++s+s D+t+r+Wd tr|S4RW84|S4RW84_PETMA 100 IRYFPGHtKKVVALCMSPVDDTFISASLDKTIRLWD 135 67799**88899***9999999999**********9 PP == domain 3 score: 2.5 bits; conditional E-value: 2.9 EEEEEEETTSSEEEEEETTSEEE CS WD40 13 vtslafspdgawlasGsdDgtvr 35 t+l+ s dg++++ ++ g +r tr|S4RW84|S4RW84_PETMA 197 WTGLKISNDGKFILIATNGGVLR 219 58999*******98776566665 PP == domain 4 score: 31.2 bits; conditional E-value: 2.5e-09 EEEEEEESS.SS..E.EEEEEETTSSEEEEEETTSEEEEE CS WD40 2 qclrtltGH.ss..v.tslafspdgawlasGsdDgtvriW 37 + l+ +tGH +s + +fspd++++++Gs+Dg++++W tr|S4RW84|S4RW84_PETMA 227 SALHMFTGHtNSkgItLEASFSPDSQFIMTGSEDGKIHVW 266 56899****96678945888******************** PP == domain 5 score: 8.7 bits; conditional E-value: 0.034 S.SSEEEEEEETTSSEEEEEE CS WD40 10 H.ssvtslafspdgawlasGs 29 H ++vt+l+f+p ++as++ tr|S4RW84|S4RW84_PETMA 281 HtGPVTCLQFNPKYMMVASAC 301 6677**********9999875 PP >> tr|S4R7I3|S4R7I3_PETMA Fizzy/cell division cycle 20 related 1b OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.4 1.1 0.00051 0.039 10 38 .] 236 263 .. 227 263 .. 0.88 2 ? 6.3 0.0 0.19 15 1 34 [. 267 302 .. 267 306 .. 0.71 3 ! 29.0 0.1 1.3e-08 9.7e-07 5 38 .] 316 350 .. 313 350 .. 0.93 4 ! 19.9 0.0 9.8e-06 0.00076 3 38 .] 356 395 .. 354 395 .. 0.84 5 ? 4.5 0.0 0.71 55 10 38 .] 409 438 .. 396 438 .. 0.74 6 ! 18.2 0.0 3.2e-05 0.0025 4 38 .] 445 480 .. 442 480 .. 0.88 Alignments for each domain: == domain 1 score: 14.4 bits; conditional E-value: 0.00051 SSSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 10 HssvtslafspdgawlasGsdDgtvriWd 38 svts+++s g+ +a G+ +g v iWd tr|S4R7I3|S4R7I3_PETMA 236 D-SVTSVSWSERGNHVAVGTHKGLVQIWD 263 3.6****************88*******9 PP == domain 2 score: 6.3 bits; conditional E-value: 0.19 TEEEEEEESS.SSE...EEEEEETTSSE....EEEEETTSEE CS WD40 1 gqclrtltGH.ssv...tslafspdgaw....lasGsdDgtv 34 g+++ tl+GH v +la w l+sGs+D+ + tr|S4R7I3|S4R7I3_PETMA 267 GKKINTLEGHtARVagaGALA------WnadqLSSGSRDRMI 302 578899****65574445884......44444889****988 PP == domain 3 score: 29.0 bits; conditional E-value: 1.3e-08 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 r l GH + v++l++spd++ lasG+ D+++ +W+ tr|S4R7I3|S4R7I3_PETMA 316 RRLQGHrQEVCGLKWSPDHQHLASGGNDNKLFVWN 350 5689**999*************************8 PP == domain 4 score: 19.9 bits; conditional E-value: 9.8e-06 EEEEEESS.SSEEEEEEETTSSEEE.EEE..TTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawla.sGs..dDgtvriWd 38 +++ +t H v ++a+sp+++ l+ sG+ D+ +r+W+ tr|S4R7I3|S4R7I3_PETMA 356 PVQQYTEHlAAVKAIAWSPHQHGLLaSGGgtADRCIRFWN 395 78999***999************752664447*******8 PP == domain 5 score: 4.5 bits; conditional E-value: 0.71 SSSEEEEEEETTSSEEEEE...ETTSEEEEEE CS WD40 10 HssvtslafspdgawlasG...sdDgtvriWd 38 v+ la+s++ + l+s s + + +W+ tr|S4R7I3|S4R7I3_PETMA 409 S-QVCNLAWSKHANELVSThgyS-QNQILVWK 438 2.59*************953233.99999995 PP == domain 6 score: 18.2 bits; conditional E-value: 3.2e-05 EEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 + +ltGHs v la spdg +++G D t+r+W+ tr|S4R7I3|S4R7I3_PETMA 445 VAKLTGHSYrVLYLAMSPDGEAIVTGAGDETLRFWN 480 6789***558****************66*******8 PP >> tr|S4RRX9|S4RRX9_PETMA Retinoblastoma binding protein 4, like OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.6 0.3 0.00045 0.035 7 38 .] 173 206 .. 167 206 .. 0.72 2 ! 13.5 0.2 0.001 0.077 5 38 .] 221 256 .. 218 256 .. 0.74 3 ! 30.1 0.0 5.9e-09 4.5e-07 2 38 .] 264 302 .. 263 302 .. 0.90 4 ! 20.4 0.1 6.7e-06 0.00052 4 38 .] 310 346 .. 308 346 .. 0.87 5 ! 19.0 0.1 1.9e-05 0.0014 4 37 .. 367 402 .. 364 403 .. 0.85 Alignments for each domain: == domain 1 score: 14.6 bits; conditional E-value: 0.00045 EESS..SSEEEEEEETTSSE.EEEEETTSEEEEEE CS WD40 7 ltGH..ssvtslafspdgaw.lasGsdDgtvriWd 38 l+GH + ++l+++p+ + l+s+sdD+tv +Wd tr|S4RRX9|S4RRX9_PETMA 173 LRGHqkEG-YGLSWNPNLSGhLLSASDDHTVCLWD 206 56775333.577777766665569999*******9 PP == domain 2 score: 13.5 bits; conditional E-value: 0.001 EEEESSSS.EEEEEEETTSSE......EEEEE..TTSEEEEEE CS WD40 5 rtltGHss.vtslafspdgaw......lasGs..dDgtvriWd 38 +++tGH+ v ++ +w l+ Gs dD++++iWd tr|S4RRX9|S4RRX9_PETMA 221 TIFTGHTAvVEDV------SWhllhesLF-GSvaDDQKLMIWD 256 579***7757***......5544444488.76458*******9 PP == domain 3 score: 30.1 bits; conditional E-value: 5.9e-09 EEEEEEESS.SSEEEEEEETTSSEE.EEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawl.asGsdDgtvriWd 38 ++ ++ ++H v++l+f+p++ ++ a+Gs D+tv +Wd tr|S4RRX9|S4RRX9_PETMA 264 KPSHSVDAHtAEVNCLSFNPYSEFIlATGSADQTVALWD 302 68899****777************6379**********9 PP == domain 4 score: 20.4 bits; conditional E-value: 6.7e-06 EEEEESS.SSEEEEEEETTSSEEE.EEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawla.sGsdDgtvriWd 38 l++++ H + + +++sp++ ++ s++ D+ + +Wd tr|S4RRX9|S4RRX9_PETMA 310 LHSFESHrDEIFQVQWSPHNETILaSSGTDRRLNVWD 346 89*****888************7525567*******9 PP == domain 5 score: 19.0 bits; conditional E-value: 1.9e-05 EEEEESS.SSEEEEEEETTSSEEEEE.ETTSEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasG.sdDgtvriW 37 l + GH +++++++p+ +w++++ s+D+ +W tr|S4RRX9|S4RRX9_PETMA 367 LFVHGGHtAKISDFSWNPNEPWVICSvSEDNIMQVW 402 556679*666************9977799****999 PP >> tr|S4RRF5|S4RRF5_PETMA THO complex 3 OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.7 0.3 2.5e-06 0.0002 4 36 .. 19 52 .. 11 53 .. 0.88 2 ! 24.3 0.1 3.8e-07 3e-05 6 38 .] 65 99 .. 61 99 .. 0.85 3 ? 5.8 0.0 0.27 21 15 29 .. 117 131 .. 104 138 .. 0.81 4 ! 25.0 0.0 2.3e-07 1.8e-05 2 38 .] 186 223 .. 185 223 .. 0.91 5 ! 12.6 0.1 0.0019 0.15 12 34 .. 239 261 .. 227 263 .. 0.78 6 ? 2.9 0.0 2.2 1.7e+02 14 32 .. 282 300 .. 269 303 .. 0.71 Alignments for each domain: == domain 1 score: 21.7 bits; conditional E-value: 2.5e-06 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvri 36 ++++t+H v+s+a+s dg+ lasGs D+t + tr|S4RRF5|S4RRF5_PETMA 19 VKEFTAHgAKVHSVAWSCDGRRLASGSFDKTASV 52 68899**655*****************9**9765 PP == domain 2 score: 24.3 bits; conditional E-value: 3.8e-07 EEESS.SSEEEEEEETTSSEE.EEEETTSEEEEEE CS WD40 6 tltGH.ssvtslafspdgawl.asGsdDgtvriWd 38 ++GH +sv l+++p ++ l +++s D+tvriWd tr|S4RRF5|S4RRF5_PETMA 65 NYRGHgDSVDQLCWHPLNPELfVTASGDKTVRIWD 99 599**888************7446666*******9 PP == domain 3 score: 5.8 bits; conditional E-value: 0.27 EEEEETTSSEEEEEE CS WD40 15 slafspdgawlasGs 29 +++spdg+ +a G tr|S4RRF5|S4RRF5_PETMA 117 NICWSPDGQTIAVGN 131 689********9885 PP == domain 4 score: 25.0 bits; conditional E-value: 2.3e-07 EEEEEEESS..SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH..ssvtslafspdgawlasGsdDgtvriWd 38 ++++++ +H +++ +++f+p g+++a+Gs D v +Wd tr|S4RRF5|S4RRF5_PETMA 186 KPIQSINAHpsNCI-CIKFDPTGKYFATGSADALVSLWD 223 6889999**95558.***********************9 PP == domain 5 score: 12.6 bits; conditional E-value: 0.0019 SEEEEEEETTSSEEEEEETTSEE CS WD40 12 svtslafspdgawlasGsdDgtv 34 +v+ l+fs+dg++las+s+D+ + tr|S4RRF5|S4RRF5_PETMA 239 PVRTLSFSHDGKMLASASEDHFI 261 388888**************965 PP == domain 6 score: 2.9 bits; conditional E-value: 2.2 EEEEEETTSSEEE.EEETTS CS WD40 14 tslafspdgawla.sGsdDg 32 +a++p ++la +++ D+ tr|S4RRF5|S4RRF5_PETMA 282 FTVAWHPKRPLLAfACD-DK 300 5799*******986775.43 PP >> tr|S4RWD0|S4RWD0_PETMA Guanine nucleotide binding protein (G protein), beta polypeptide 1a OS=Petromyzon marinus OX= # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.4 0.0 1.8e-07 1.4e-05 4 38 .] 48 83 .. 45 83 .. 0.94 2 ! 13.2 0.1 0.0012 0.095 12 38 .] 99 125 .. 86 125 .. 0.86 3 ! 20.6 0.2 5.9e-06 0.00046 4 38 .] 136 170 .. 133 170 .. 0.90 4 ! 24.9 0.1 2.6e-07 2e-05 2 38 .] 175 212 .. 174 212 .. 0.92 5 ? 8.1 0.0 0.051 4 2 16 .. 217 232 .. 216 233 .] 0.88 Alignments for each domain: == domain 1 score: 25.4 bits; conditional E-value: 1.8e-07 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 rtl+GH ++++ + d+++l+s+s Dg++ iWd tr|S4RWD0|S4RWD0_PETMA 48 RRTLRGHlAKIYAMHWGTDSRLLVSASQDGKLIIWD 83 689****999*************************9 PP == domain 2 score: 13.2 bits; conditional E-value: 0.0012 SEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 12 svtslafspdgawlasGsdDgtvriWd 38 +v +a+ p+g+++a+G+ D+ + i++ tr|S4RWD0|S4RWD0_PETMA 99 WVMTCAYAPSGSYVACGGLDNICSIYN 125 488889*******************97 PP == domain 3 score: 20.6 bits; conditional E-value: 5.9e-06 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 r+l GH + ++++f +d++ ++s++ D t+ +Wd tr|S4RWD0|S4RWD0_PETMA 136 SRELPGHtGYLSCCRFLDDNQIITSSG-DTTCALWD 170 57899**666*************9999.*******9 PP == domain 4 score: 24.9 bits; conditional E-value: 2.6e-07 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 q+++t+tGH ++v sl+ pd++ ++sG D + ++Wd tr|S4RWD0|S4RWD0_PETMA 175 QQTTTFTGHtGDVMSLSLAPDSRTFVSGACDASAKLWD 212 67889****888****************77*******9 PP == domain 5 score: 8.1 bits; conditional E-value: 0.051 EEEEEEESS.SSEEEE CS WD40 2 qclrtltGH.ssvtsl 16 c +t+tGH s+++++ tr|S4RWD0|S4RWD0_PETMA 217 MCRQTFTGHeSDINAV 232 5899*****999**99 PP >> tr|S4R828|S4R828_PETMA Ribosomal RNA processing 9, small subunit (SSU) processome component, homolog (yeast) OS=Petr # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 22.3 0.1 1.7e-06 0.00013 4 38 .] 148 183 .. 146 183 .. 0.93 2 ! 25.6 0.1 1.6e-07 1.2e-05 8 38 .] 205 236 .. 198 236 .. 0.93 3 ! 19.5 0.1 1.3e-05 0.00099 2 38 .] 241 278 .. 240 278 .. 0.88 4 ? 4.2 0.0 0.86 67 24 37 .. 346 359 .. 332 359 .. 0.76 5 ! 18.1 0.0 3.6e-05 0.0028 12 38 .] 387 413 .. 369 413 .. 0.87 Alignments for each domain: == domain 1 score: 22.3 bits; conditional E-value: 1.7e-06 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +r+l+GH ++ +l spd++ ++s+s+D+t+ Wd tr|S4R828|S4R828_PETMA 148 VRVLRGHqLPIVCLVISPDSKHIFSASKDCTLIKWD 183 789****77799********************9998 PP == domain 2 score: 25.6 bits; conditional E-value: 1.6e-07 ESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 8 tGH.ssvtslafspdgawlasGsdDgtvriWd 38 +GH +v ++a s+dg++la+G++D+ + +W+ tr|S4R828|S4R828_PETMA 205 DGHaAHVLCMAISSDGKYLATGDRDNLILLWN 236 69*888*************************8 PP == domain 3 score: 19.5 bits; conditional E-value: 1.3e-05 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 q+l+t++GH + +l+f + + l s+s D++v++W+ tr|S4R828|S4R828_PETMA 241 QLLHTFKGHrDTAPGLCFRKGTHQLYSASHDRSVKVWN 278 79*******855449999999999**9999*******8 PP == domain 4 score: 4.2 bits; conditional E-value: 0.86 EEEEEETTSEEEEE CS WD40 24 wlasGsdDgtvriW 37 ++sG dDg++ +W tr|S4R828|S4R828_PETMA 346 HMVSGADDGSLALW 359 3579*9*****999 PP == domain 5 score: 18.1 bits; conditional E-value: 3.6e-05 SEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 12 svtslafspdgawlasGsdDgtvriWd 38 ++ts+a +++ +asGs Dg++r+W+ tr|S4R828|S4R828_PETMA 387 WITSVAAMLNSDVVASGSHDGHIRLWK 413 4899988889999****99*******6 PP >> tr|S4R8U3|S4R8U3_PETMA Echinoderm microtubule associated protein like 2 OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.2 0.1 0.00014 0.011 4 34 .. 97 133 .. 95 134 .. 0.86 2 ? 2.8 0.0 2.5 1.9e+02 13 37 .. 207 231 .. 193 231 .. 0.78 3 ? 8.8 0.0 0.031 2.4 2 37 .. 240 277 .. 239 277 .. 0.85 4 ! 16.9 0.1 8.6e-05 0.0066 9 38 .] 292 321 .. 285 321 .. 0.90 5 ? 9.8 0.0 0.015 1.1 7 38 .] 372 404 .. 366 404 .. 0.88 6 ? 9.1 0.0 0.024 1.9 13 37 .. 462 486 .. 446 487 .. 0.76 7 ! 16.8 0.2 9e-05 0.0069 4 31 .. 498 526 .. 495 532 .. 0.79 8 ! 20.9 0.7 4.8e-06 0.00037 2 37 .. 608 645 .. 607 646 .. 0.89 Alignments for each domain: == domain 1 score: 16.2 bits; conditional E-value: 0.00014 EEEEESS.SSEEEEEEETTSSEEEEE.....ETTSEE CS WD40 4 lrtltGH.ssvtslafspdgawlasG.....sdDgtv 34 +r++ GH +++ ++a++pd+ +a+G s+Dg+v tr|S4R8U3|S4R8U3_PETMA 97 QRHYLGHdDDIKCMAVHPDKVIVATGqvvgkSKDGKV 133 799****888**************9877656689987 PP == domain 2 score: 2.8 bits; conditional E-value: 2.5 EEEEEEETTSSEE.EEEETTSEEEEE CS WD40 13 vtslafspdgawl.asGsdDgtvriW 37 v+s +f+p + ++++ ++++ +W tr|S4R8U3|S4R8U3_PETMA 207 VYSADFHPKEENViVTCG-KNNINFW 231 689999999999626999.****999 PP == domain 3 score: 8.8 bits; conditional E-value: 0.031 EEEEEEESS.SS..EEEEEEETTSSEEEEEETTSEEEEE CS WD40 2 qclrtltGH.ss..vtslafspdgawlasGsdDgtvriW 37 +++++++ H ++ v +l + ++g+ + sG+ g++++W tr|S4R8U3|S4R8U3_PETMA 240 KKQGIFEKHeKPkhVLCLIYLDNGDAV-SGDSSGNIYVW 277 57889999995566****999999996.8*66******* PP == domain 4 score: 16.9 bits; conditional E-value: 8.6e-05 SS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 9 GH.ssvtslafspdgawlasGsdDgtvriWd 38 H s+v +l+ dg+++ sG++Dg+v +Wd tr|S4R8U3|S4R8U3_PETMA 292 VHaSGVMALCERADGTFI-SGGRDGHVVFWD 321 59888************7.7**********9 PP == domain 5 score: 9.8 bits; conditional E-value: 0.015 EESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 7 ltGH.ssvtslafspdgawlasGsdDgtvriWd 38 GH + ++la++++++ ++++ D+ +W+ tr|S4R8U3|S4R8U3_PETMA 372 VQGHtDELWGLAVHQNQDAFLTCAQDKQAILWN 404 57**666*************************8 PP == domain 6 score: 9.1 bits; conditional E-value: 0.024 EEEEEEETTSSEEEEEETTSEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriW 37 + +++spdg+ la Gs D+ ++++ tr|S4R8U3|S4R8U3_PETMA 462 IAVMRYSPDGSHLAVGSNDNFIYVY 486 544569**************99997 PP == domain 7 score: 16.8 bits; conditional E-value: 9e-05 EEEEESS.SSEEEEEEETTSSEEEEEETT CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdD 31 ++++tGH s+vt+l++s +g +l+s s D tr|S4R8U3|S4R8U3_PETMA 498 VGKCTGHsSFVTHLDWSTNGEFLMSNSGD 526 6789***777*************963324 PP == domain 8 score: 20.9 bits; conditional E-value: 4.8e-06 EEEEEEESS.SSEEEEEEETTSSEEE.EEETTSEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawla.sGsdDgtvriW 37 ++ + + GH s+vt +afs+d ++++ +G++D v W tr|S4R8U3|S4R8U3_PETMA 608 SPSHAYGGHcSHVTNVAFSSDDSFVFtTGGKDMGVLQW 645 67899****999************864899**999999 PP >> tr|S4RGF4|S4RGF4_PETMA Peroxisomal biogenesis factor 7 OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.6 0.1 0.00023 0.017 12 38 .] 69 96 .. 56 96 .. 0.81 2 ! 29.4 0.2 9.3e-09 7.2e-07 3 38 .] 103 141 .. 101 141 .. 0.88 3 ! 17.1 0.1 7.5e-05 0.0058 4 38 .] 148 184 .. 145 184 .. 0.73 4 ? 7.3 0.1 0.094 7.3 8 38 .] 196 228 .. 191 228 .. 0.77 5 ! 22.3 0.0 1.6e-06 0.00012 2 38 .] 234 272 .. 233 272 .. 0.88 Alignments for each domain: == domain 1 score: 15.6 bits; conditional E-value: 0.00023 SEEEEEEETTSSEE.EEEETTSEEEEEE CS WD40 12 svtslafspdgawl.asGsdDgtvriWd 38 s ++a+s d+ + ++Gs Dg++ +Wd tr|S4RGF4|S4RGF4_PETMA 69 SLFDVAWSEDNEHVlVTGSGDGSLQLWD 96 467999*******6269*88*******9 PP == domain 2 score: 29.4 bits; conditional E-value: 9.3e-09 EEEEEESS.SSEEEEEEETTSSE........EEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgaw........lasGsdDgtvriWd 38 +lr++ GH + v+s+ +w ++sGs+D+t r+Wd tr|S4RGF4|S4RGF4_PETMA 103 PLRVYQGHtKEVYSV------DWsqtrgenlVVSGSWDHTARVWD 141 79******999****......777777778788***********9 PP == domain 3 score: 17.1 bits; conditional E-value: 7.5e-05 EEEEESSSS.EEEEEEETTSSE.EEEEETTSEEEEEE CS WD40 4 lrtltGHss.vtslafspdgaw.lasGsdDgtvriWd 38 l +++GH + v+s +sp+ + +as+s D+t+r+Wd tr|S4RGF4|S4RGF4_PETMA 148 LAEYRGHEGvVYSTVWSPHIPScFASASGDQTLRVWD 184 7789***6646777566665665667767*******9 PP == domain 4 score: 7.3 bits; conditional E-value: 0.094 ESS.SSEEEEEEETTSSEE.EEEETTSEEEEEE CS WD40 8 tGH.ssvtslafspdgawl.asGsdDgtvriWd 38 +H v s++++++ + l +s+ D+ +r Wd tr|S4RGF4|S4RGF4_PETMA 196 PAHqEEVLSCDWCKYDQNLlVSAAVDCGIRGWD 228 689666999*877777775268889*****998 PP == domain 5 score: 22.3 bits; conditional E-value: 1.6e-06 EEEEEEESSSS.EEEEEEETTSSEE.EEEETTSEEEEEE CS WD40 2 qclrtltGHss.vtslafspdgawl.asGsdDgtvriWd 38 q++ +l GHs ++ ++ sp ++ + as+s+D +vr+Wd tr|S4RGF4|S4RGF4_PETMA 234 QPVFSLLGHSYaIRRVRCSPFQPTVlASCSYDFSVRFWD 272 8999999**557************626899********9 PP >> tr|S4R709|S4R709_PETMA Uncharacterized protein OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.5 0.0 1.5 1.1e+02 25 36 .. 92 103 .. 55 103 .. 0.68 2 ! 33.6 0.1 4.4e-10 3.4e-08 5 38 .] 113 147 .. 109 147 .. 0.93 3 ! 25.0 0.0 2.3e-07 1.8e-05 4 38 .] 154 189 .. 151 189 .. 0.90 4 ! 16.9 0.1 8.7e-05 0.0068 2 32 .. 194 225 .. 193 227 .. 0.88 Alignments for each domain: == domain 1 score: 3.5 bits; conditional E-value: 1.5 EEEEETTSEEEE CS WD40 25 lasGsdDgtvri 36 la+G+ Dg vr+ tr|S4R709|S4R709_PETMA 92 LAAGHVDGAVRL 103 899*******97 PP == domain 2 score: 33.6 bits; conditional E-value: 4.4e-10 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 t+tGH + +t+la++pdg+ l+sGs D v +Wd tr|S4R709|S4R709_PETMA 113 VTFTGHrTAITALAYHPDGTRLVSGSQDTDVIVWD 147 589***999*************************9 PP == domain 3 score: 25.0 bits; conditional E-value: 2.3e-07 EEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 l+ l+GH++ vts +f + ++ l++Gs+D v++Wd tr|S4R709|S4R709_PETMA 154 LYRLKGHKDaVTSARFFSTKNVLLTGSKDSFVKFWD 189 56799**555*************************9 PP == domain 4 score: 16.9 bits; conditional E-value: 8.7e-05 EEEEEEESS.SSEEEEEEETTSSEEEEEETTS CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDg 32 c +tl GH s+v+sla+ + + l++Gs D tr|S4R709|S4R709_PETMA 194 HCFKTLVGHrSDVWSLATFGEDTRLVTGSADS 225 5999*************8888888899*9996 PP >> tr|S4RSZ5|S4RSZ5_PETMA BUB3 mitotic checkpoint protein OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.1 0.0 0.00066 0.051 11 38 .] 18 46 .. 6 46 .. 0.78 2 ? 9.4 0.0 0.02 1.6 3 38 .] 51 86 .. 49 86 .. 0.77 3 ! 26.0 0.0 1.1e-07 8.8e-06 8 38 .] 96 127 .. 90 127 .. 0.89 4 ? 1.4 0.0 6.8 5.2e+02 21 38 .] 149 166 .. 135 166 .. 0.79 5 ! 17.4 0.0 5.7e-05 0.0044 7 38 .] 224 265 .. 218 265 .. 0.83 6 ? 4.4 0.0 0.77 60 10 29 .. 276 298 .. 268 304 .. 0.75 Alignments for each domain: == domain 1 score: 14.1 bits; conditional E-value: 0.00066 SSEEEEEEETTSSE.EEEEETTSEEEEEE CS WD40 11 ssvtslafspdgaw.lasGsdDgtvriWd 38 +++t+++f p+++ l+ +s+D+tvr+ d tr|S4RSZ5|S4RSZ5_PETMA 18 DGITAVKFGPNSSQfLLVSSWDCTVRLHD 46 34*****888888855589*******966 PP == domain 2 score: 9.4 bits; conditional E-value: 0.02 EEEEEESS.SSEEEEE.EETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtsla.fspdgawlasGsdDgtvriWd 38 ++r+ +H ++v ++a + +aw sG+ D+tv+++d tr|S4RSZ5|S4RSZ5_PETMA 51 TQRVKYTHaGPVLDCAfQDMTHAW--SGGLDNTVKLYD 86 566655798889888766667777..8*********98 PP == domain 3 score: 26.0 bits; conditional E-value: 1.1e-07 ESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 8 tGH.ssvtslafspdgawlasGsdDgtvriWd 38 +H v+++ f+p+ + +++Gs+D+tv++Wd tr|S4RSZ5|S4RSZ5_PETMA 96 GTHeAAVRCVEFCPEVNVMVTGSWDQTVKLWD 127 468777*************************9 PP == domain 4 score: 1.4 bits; conditional E-value: 6.8 TSSEEEEEETTSEEEEEE CS WD40 21 dgawlasGsdDgtvriWd 38 +g+ l+ G+ + v +Wd tr|S4RSZ5|S4RSZ5_PETMA 149 SGDRLIVGTAGRRVLVWD 166 5666777988*******9 PP == domain 5 score: 17.4 bits; conditional E-value: 5.7e-05 EESS..SS........EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 7 ltGH..ss........vtslafspdgawlasGsdDgtvriWd 38 ++ H ++ v+++af+ ++ +a+G+ Dg v iWd tr|S4RSZ5|S4RSZ5_PETMA 224 FKCHrlKDngveliypVNAIAFHNVHNTFATGGSDGFVNIWD 265 67777755668887789***************88*******9 PP == domain 6 score: 4.4 bits; conditional E-value: 0.77 S...SSEEEEEEETTSSEEEEEE CS WD40 10 H...ssvtslafspdgawlasGs 29 H +s+ slafs dg+++a +s tr|S4RSZ5|S4RSZ5_PETMA 276 HrypTSIASLAFSMDGSMIAIAS 298 54445699**********98543 PP >> tr|S4RYN1|S4RYN1_PETMA Uncharacterized protein OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.3 0.0 1.7 1.3e+02 15 32 .. 335 354 .. 316 355 .. 0.76 2 ! 29.2 0.2 1.1e-08 8.4e-07 1 38 [] 365 403 .. 365 403 .. 0.93 3 ? 3.2 0.0 1.8 1.4e+02 25 38 .] 435 448 .. 419 448 .. 0.81 4 ! 17.7 0.0 4.9e-05 0.0038 1 37 [. 458 495 .. 458 496 .. 0.91 5 ! 18.9 0.0 2e-05 0.0015 3 38 .] 557 595 .. 555 595 .. 0.84 6 ? 1.8 0.0 4.9 3.8e+02 11 31 .. 612 633 .. 600 635 .. 0.80 Alignments for each domain: == domain 1 score: 3.3 bits; conditional E-value: 1.7 EEEEETTSSEEEEE..ETTS CS WD40 15 slafspdgawlasG..sdDg 32 ++fspdg+ la++ ++D tr|S4RYN1|S4RYN1_PETMA 335 RVRFSPDGRALAAAcaHRDS 354 577*******9854236776 PP == domain 2 score: 29.2 bits; conditional E-value: 1.1e-08 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 gq+l +l GH + v++l++s+d++ l+s+s Dgt r+W+ tr|S4RYN1|S4RYN1_PETMA 365 GQLLMELPGHlGLVYDLSWSHDSSHLLSASSDGTARLWN 403 68999*****777*************99988*******8 PP == domain 3 score: 3.2 bits; conditional E-value: 1.8 EEEEETTSEEEEEE CS WD40 25 lasGsdDgtvriWd 38 ++G +Dg +r Wd tr|S4RYN1|S4RYN1_PETMA 435 AVTGAYDGVLRAWD 448 569999*******9 PP == domain 4 score: 17.7 bits; conditional E-value: 4.9e-05 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 g++lr+l+GH + v++++f+ dg ++sG+ g v +W tr|S4RYN1|S4RYN1_PETMA 458 GRLLRELDGHrGYVNAVCFDADGLQMFSGDSTGVVLVW 495 5789******888****************669999999 PP == domain 5 score: 18.9 bits; conditional E-value: 2e-05 EEEEEESS.SS...E.EEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ss...v.tslafspdgawlasGsdDgtvriWd 38 +r++tG + v +++ sp g++l+sGs+Dg ++W+ tr|S4RYN1|S4RYN1_PETMA 557 VTRKFTGAsNQrerVhSCI--SPCGTFLLSGSEDGVAYVWN 595 5788999954489994555..*******************8 PP == domain 6 score: 1.8 bits; conditional E-value: 4.9 SSEEEEEEETTSSEEE.EEETT CS WD40 11 ssvtslafspdgawla.sGsdD 31 +v+++ f+p+ +++a +++ D tr|S4RYN1|S4RYN1_PETMA 612 APVRDVHFHPHEHMVAfCCHGD 633 469***********98688645 PP >> tr|S4RRJ1|S4RRJ1_PETMA WD repeat domain 36 OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 10.8 0.4 0.0074 0.57 3 38 .] 44 78 .. 42 78 .. 0.85 2 ? 1.1 0.0 8.2 6.4e+02 1 16 [. 127 143 .. 127 159 .. 0.87 3 ? 9.8 0.1 0.015 1.1 9 38 .] 175 208 .. 169 208 .. 0.81 4 ? 5.4 0.0 0.38 29 10 37 .. 222 250 .. 213 251 .. 0.73 5 ? 1.3 0.0 7.4 5.7e+02 7 34 .. 265 294 .. 260 297 .. 0.66 6 ? 2.9 0.0 2.3 1.8e+02 14 38 .] 390 414 .. 384 414 .. 0.88 7 ? 4.1 0.0 0.95 74 5 37 .. 425 458 .. 421 458 .. 0.77 8 ! 33.9 0.1 3.5e-10 2.7e-08 2 38 .] 505 542 .. 504 542 .. 0.93 9 ? 5.6 0.0 0.32 25 11 32 .. 556 577 .. 548 583 .. 0.86 Alignments for each domain: == domain 1 score: 10.8 bits; conditional E-value: 0.0074 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++t++GH + v+ l p g+ l+s ++D+ + +Wd tr|S4RRJ1|S4RRJ1_PETMA 44 VVHTYDGHsGEVH-L-LLPLGDHLVSVDRDNILVVWD 78 68******555*5.5.5999999**999********9 PP == domain 2 score: 1.1 bits; conditional E-value: 8.2 TEEEEEEESS.SSEEEE CS WD40 1 gqclrtltGH.ssvtsl 16 g++l t++G s vt+l tr|S4RRJ1|S4RRJ1_PETMA 127 GKLLFTFKGWaSEVTCL 143 68899*****888***9 PP == domain 3 score: 9.8 bits; conditional E-value: 0.015 SS.SS..EEEEEEETTSSEE.EEEETTSEEEEEE CS WD40 9 GH.ss..vtslafspdgawl.asGsdDgtvriWd 38 H ++ vt+++f dg+ + a+Gs g++ +Wd tr|S4RRJ1|S4RRJ1_PETMA 175 FHqDWgpVTCISFRTDGPAVmATGSSLGHIALWD 208 5753356************8469988*******9 PP == domain 4 score: 5.4 bits; conditional E-value: 0.38 S.SSEEEEEEETTSSEEE.EEETTSEEEEE CS WD40 10 H.ssvtslafspdgawla.sGsdDgtvriW 37 H v + f ++ ++l+ +++ D+ +++W tr|S4RRJ1|S4RRJ1_PETMA 222 HaAAVAGATFIHNEPLLLtTAG-DNAIKVW 250 5444666667778888762678.******* PP == domain 5 score: 1.3 bits; conditional E-value: 7.4 EESS.SSEEEEEEETTSSE.EEEEETTSEE CS WD40 7 ltGH.ssvtslafspdgaw.lasGsdDgtv 34 GH + ts++ + + ++s++ Dgt+ tr|S4RRJ1|S4RRJ1_PETMA 265 RCGHsAPPTSIRHHGQDGFnILSAGQDGTL 294 45895556777744444445788999**97 PP == domain 6 score: 2.9 bits; conditional E-value: 2.3 EEEEEETTSSEEEEE.ETTSEEEEEE CS WD40 14 tslafspdgawlasG.sdDgtvriWd 38 t++ +sp g++ + G s g+v +++ tr|S4RRJ1|S4RRJ1_PETMA 390 TAVTVSPCGNFAIIGlS-SGHVNVYN 414 78999******989977.99999987 PP == domain 7 score: 4.1 bits; conditional E-value: 0.95 EEEESS.SSEEEEEEETTSSE.EEEEETTSEEEEE CS WD40 5 rtltGH.ssvtslafspdgaw.lasGsdDgtvriW 37 ++ t+H ++v+++a + g++ ++ G+ D +r+W tr|S4RRJ1|S4RRJ1_PETMA 425 GSPTAHgGPVRAVALDLLGQMaVSVGG-DLALRVW 458 56789*888****77777777434578.******9 PP == domain 8 score: 33.9 bits; conditional E-value: 3.5e-10 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 + +r+l GH +t+ fspdg+wl+++s+D++vr Wd tr|S4RRJ1|S4RRJ1_PETMA 505 KIVRVLNGHgAQITDATFSPDGRWLLTASMDRSVRTWD 542 56899****666*************************9 PP == domain 9 score: 5.6 bits; conditional E-value: 0.32 SSEEEEEEETTSSEEEEE.ETTS CS WD40 11 ssvtslafspdgawlasG.sdDg 32 s+v sl+ sp g++la++ s D+ tr|S4RRJ1|S4RRJ1_PETMA 556 SPVVSLSMSPTGDYLATAlS-DH 577 45889***********9977.75 PP >> tr|S4RPA2|S4RPA2_PETMA Uncharacterized protein OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.7 0.2 6.6e-08 5.1e-06 4 38 .] 4 39 .. 2 39 .. 0.91 2 ! 11.9 0.1 0.0032 0.25 3 38 .] 45 82 .. 43 82 .. 0.74 3 ! 25.9 0.0 1.2e-07 9.2e-06 7 38 .] 91 124 .. 86 124 .. 0.85 4 ! 14.1 0.3 0.00064 0.05 9 38 .] 137 167 .. 129 167 .. 0.85 Alignments for each domain: == domain 1 score: 26.7 bits; conditional E-value: 6.6e-08 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++l+GH ++++++ f + +++s+D+t +iWd tr|S4RPA2|S4RPA2_PETMA 4 FKVLRGHaGGINCCHFGFGDSRAVTCSEDRTAKIWD 39 6899***888****9988888899***********9 PP == domain 2 score: 11.9 bits; conditional E-value: 0.0032 EEEEEE.SS.SSE..EEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtlt.GH.ssv..tslafspdgawlasGsdDgtvriWd 38 l++++ +H +++ +s+ +s g++l + s+D+ ++Wd tr|S4RPA2|S4RPA2_PETMA 45 ILKSFDdAHqNNIpeCSV-NSTGGRLL-TVSWDKAMKLWD 82 567775599888974444.66677776.79*********9 PP == domain 3 score: 25.9 bits; conditional E-value: 1.2e-07 EESS.SSEEEEEEETTSSEEEEE.ETTSEEEEEE CS WD40 7 ltGH.ssvtslafspdgawlasG.sdDgtvriWd 38 +++H + t+++ s+dg++la+G +D+++r+Wd tr|S4RPA2|S4RPA2_PETMA 91 CETHaWPLTCCDASRDGRLLATGtAMDRSLRLWD 124 57895559***************547*******9 PP == domain 4 score: 14.1 bits; conditional E-value: 0.00064 SS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 9 GH.ssvtslafspdgawlasGsdDgtvriWd 38 H + t+++f+ + ++++s D++ ++Wd tr|S4RPA2|S4RPA2_PETMA 137 HHeGALTGCRFDCGAQRVVTSSCDRSFKVWD 167 4555599**99999999999988*******9 PP >> tr|S4R754|S4R754_PETMA Uncharacterized protein OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 29.5 0.1 8.7e-09 6.7e-07 6 38 .] 180 212 .. 175 212 .. 0.91 2 ! 23.9 0.0 5.1e-07 3.9e-05 1 37 [. 216 253 .. 216 254 .. 0.92 3 ! 19.0 0.9 1.9e-05 0.0015 3 37 .. 260 299 .. 258 300 .. 0.84 Alignments for each domain: == domain 1 score: 29.5 bits; conditional E-value: 8.7e-09 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 6 tltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +l GH ssv++laf++ g+ +++GsdD+ v++W+ tr|S4R754|S4R754_PETMA 180 IL-GHlSSVYCLAFDRTGQRIFTGSDDCLVKVWS 212 44.9*****************************5 PP == domain 2 score: 23.9 bits; conditional E-value: 5.1e-07 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 g++l tl+GH ++++a++ ++++la+G+ D+ vr+W tr|S4R754|S4R754_PETMA 216 GRLLATLRGHaAEISDMAVNYENSLLAAGTCDHVVRVW 253 57899*****777****************77******* PP == domain 3 score: 19.0 bits; conditional E-value: 1.9e-05 EEEEEESS.SSEEEEEEETTSSE....EEEEETTSEEEEE CS WD40 3 clrtltGH.ssvtslafspdgaw....lasGsdDgtvriW 37 ++ +l GH s+tsl+fsp + las++ Dg v +W tr|S4R754|S4R754_PETMA 260 PMAVLQGHtASITSLQFSPQCRGsvrwLASSGADGIVCFW 299 67899***888****977777777777998888******* PP >> tr|S4RWE5|S4RWE5_PETMA WD repeat domain 44 OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.3 0.0 7.2e-06 0.00056 9 37 .. 285 314 .. 278 315 .. 0.89 2 ! 23.6 0.1 6.6e-07 5.1e-05 2 37 .. 376 411 .. 375 412 .. 0.87 3 ! 20.6 0.1 5.7e-06 0.00044 2 38 .] 417 454 .. 416 454 .. 0.82 4 ? 5.2 0.0 0.42 33 13 37 .. 473 497 .. 464 498 .. 0.82 Alignments for each domain: == domain 1 score: 20.3 bits; conditional E-value: 7.2e-06 SS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 9 GH.ssvtslafspdgawlasGsdDgtvriW 37 H + v+ ++fs+ g++la+++ D+ vriW tr|S4RWE5|S4RWE5_PETMA 285 EHkGAVWTMKFSHCGRLLATAGQDNVVRIW 314 58555************************* PP == domain 2 score: 23.6 bits; conditional E-value: 6.6e-07 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 q+ +++GH + +l++s++ +l+ +s+D+tvr+W tr|S4RWE5|S4RWE5_PETMA 376 QPFCKYSGHtADLLDLSWSKNYFLLS-SSMDKTVRLW 411 77889****88899*******99985.666******* PP == domain 3 score: 20.6 bits; conditional E-value: 5.7e-06 EEEEEEESS.SSEEEEEEETTSSE.EEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgaw.lasGsdDgtvriWd 38 +cl + H ++vt++af+p + ++sGs Dg++r+W+ tr|S4RWE5|S4RWE5_PETMA 417 ECLCCF-QHiDFVTAIAFHPRDDRyFLSGSLDGKLRLWN 454 577777.59999*****6666666688***********8 PP == domain 4 score: 5.2 bits; conditional E-value: 0.42 EEEEEEETTSSEEEEEETTSEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriW 37 +t+ f+++g++ + G++Dg + ++ tr|S4RWE5|S4RWE5_PETMA 473 ITAANFCQNGKFAVIGTYDGRCVFY 497 89999*******999*99**99876 PP >> tr|S4RCA4|S4RCA4_PETMA Cell division cycle 20 homolog OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 12.8 1.6 0.0017 0.13 2 35 .. 263 295 .. 262 298 .. 0.85 2 ! 31.1 0.3 2.7e-09 2.1e-07 3 37 .. 305 340 .. 303 340 .. 0.92 3 ! 21.3 0.3 3.5e-06 0.00027 3 38 .] 349 388 .. 347 388 .. 0.81 4 ! 12.1 0.0 0.0027 0.21 3 37 .. 437 472 .. 435 473 .. 0.86 Alignments for each domain: == domain 1 score: 12.8 bits; conditional E-value: 0.0017 EEEEEEESSSS.EEEEEEETTSSEEEEEETTSEEE CS WD40 2 qclrtltGHss.vtslafspdgawlasGsdDgtvr 35 +clr GHs+ v+sl s +g++l+sGs+ g ++ tr|S4RCA4|S4RCA4_PETMA 263 KCLRNMQGHSGrVSSL--SWNGHLLSSGSRSGQIH 295 8********445****..779999*****999886 PP == domain 2 score: 31.1 bits; conditional E-value: 2.7e-09 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 ++ tl+GH + v++la+sp g++lasGs D+++ +W tr|S4RCA4|S4RCA4_PETMA 305 HVATLSGHsQEVCGLAWSPGGRLLASGSNDNNLLVW 340 5789****666************************* PP == domain 3 score: 21.3 bits; conditional E-value: 3.5e-06 EEEEEESS.SSEEEEEEETTSSEE.EEEE..TTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawl.asGs..dDgtvriWd 38 +l++l H v +la++p +a l asG+ D+++r+W+ tr|S4RCA4|S4RCA4_PETMA 349 PLHSLQQHtAAVKALAWCPWQASLlASGGgtNDHHIRLWN 388 89******777****99988888725764346*******8 PP == domain 4 score: 12.1 bits; conditional E-value: 0.0027 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 ++ +l GH v + spdg+ ++s + D ++r+W tr|S4RCA4|S4RCA4_PETMA 437 PIAELLGHtERVLQVVASPDGSSVMSVGADESLRLW 472 567788**666*************98777******* PP >> tr|S4RGD4|S4RGD4_PETMA Uncharacterized protein OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.2 0.1 0.023 1.8 23 38 .] 30 45 .. 5 45 .. 0.82 2 ! 12.1 0.1 0.0028 0.22 12 37 .. 61 86 .. 49 87 .. 0.84 3 ! 19.2 0.2 1.6e-05 0.0012 3 38 .] 97 133 .. 95 133 .. 0.91 4 ! 26.8 0.1 6.4e-08 4.9e-06 3 38 .] 139 175 .. 137 175 .. 0.90 5 ? 7.9 0.0 0.059 4.5 2 16 .. 180 195 .] 179 195 .] 0.92 Alignments for each domain: == domain 1 score: 9.2 bits; conditional E-value: 0.023 SEEEEEETTSEEEEEE CS WD40 23 awlasGsdDgtvriWd 38 +l+s+s Dg++ +Wd tr|S4RGD4|S4RGD4_PETMA 30 ILLVSASQDGKLIVWD 45 357899*********9 PP == domain 2 score: 12.1 bits; conditional E-value: 0.0028 SEEEEEEETTSSEEEEEETTSEEEEE CS WD40 12 svtslafspdgawlasGsdDgtvriW 37 +v +a+ p+g+++a+G+ D+ + ++ tr|S4RGD4|S4RGD4_PETMA 61 WVMTCAYAPSGNFVACGGLDNMCSVY 86 488889***************99887 PP == domain 3 score: 19.2 bits; conditional E-value: 1.6e-05 EEEEEESSSS..EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGHss..vtslafspdgawlasGsdDgtvriWd 38 +r+l GH++ ++++f +d + l+s++ D + +Wd tr|S4RGD4|S4RGD4_PETMA 97 VTRELPGHNGryLSCCRFLDDTKILTSSG-DTLCCLWD 133 57899***7779*************9999.*******9 PP == domain 4 score: 26.8 bits; conditional E-value: 6.4e-08 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 + t+ GH ++v sl+ spdg++++sG D + ++Wd tr|S4RGD4|S4RGD4_PETMA 139 LSSTFMGHtGDVMSLSMSPDGRMFVSGACDSSAKLWD 175 667899**888****************77*******9 PP == domain 5 score: 7.9 bits; conditional E-value: 0.059 EEEEEEESS.SSEEEE CS WD40 2 qclrtltGH.ssvtsl 16 +c +t+tGH s+++++ tr|S4RGD4|S4RGD4_PETMA 180 KCRQTFTGHeSDINAI 195 799******999*998 PP >> tr|S4RBD7|S4RBD7_PETMA Uncharacterized protein OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.4 0.1 0.00025 0.019 5 38 .] 63 95 .. 59 95 .. 0.85 2 ? 8.9 0.1 0.029 2.2 12 38 .] 116 142 .. 105 142 .. 0.91 3 ! 14.2 0.2 0.00063 0.048 14 38 .] 162 186 .. 152 186 .. 0.85 4 ! 15.5 0.8 0.00023 0.018 3 38 .] 192 228 .. 190 228 .. 0.87 5 ? 7.1 0.0 0.1 7.9 7 32 .. 235 263 .. 230 267 .. 0.74 6 ! 10.9 0.2 0.0068 0.52 10 37 .. 281 309 .. 274 310 .. 0.85 7 ? 8.5 0.1 0.037 2.9 11 33 .. 324 346 .. 316 351 .. 0.82 Alignments for each domain: == domain 1 score: 15.4 bits; conditional E-value: 0.00025 EEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 5 rtltGHss.vtslafspdgawlasGsdDgtvriWd 38 tl GH+ v+++ s + + +G+ +g v++Wd tr|S4RBD7|S4RBD7_PETMA 63 STL-GHGEvVCAVTISNPTRHVYTGG-KGCVKVWD 95 455.9*6657***999999*******.*******9 PP == domain 2 score: 8.9 bits; conditional E-value: 0.029 SEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 12 svtslafspdgawlasGsdDgtvriWd 38 ++s++ pdg+ l+ G++ t+ iWd tr|S4RBD7|S4RBD7_PETMA 116 YIRSCKLLPDGRTLIVGGEASTLSIWD 142 49999*********************9 PP == domain 3 score: 14.2 bits; conditional E-value: 0.00063 EEEEEETTSSEEEEEETTSEEEEEE CS WD40 14 tslafspdgawlasGsdDgtvriWd 38 ++la spd++ +s++ Dg++ +Wd tr|S4RBD7|S4RBD7_PETMA 162 YALAISPDSKVCFSCCSDGNIAVWD 186 6899*******887755*******9 PP == domain 4 score: 15.5 bits; conditional E-value: 0.00023 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++r + GH ++ ++++ s+dg l +G+ D+tvr Wd tr|S4RBD7|S4RBD7_PETMA 192 LVRQFQGHtDGASCIDISHDGMKLWTGGLDNTVRSWD 228 6899****777999999999999647999*******9 PP == domain 5 score: 7.1 bits; conditional E-value: 0.1 EESS..SS.EEEEEEETTSSEEEEEETTS CS WD40 7 ltGH..ss.vtslafspdgawlasGsdDg 32 l H +s + sl ++p g wla G++ tr|S4RBD7|S4RBD7_PETMA 235 LQQHdfTSqIFSLGYCPTGEWLAVGMESS 263 566753226**************997555 PP == domain 6 score: 10.9 bits; conditional E-value: 0.0068 S.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 10 H.ssvtslafspdgawlasGsdDgtvriW 37 H s+v sl+f + g+w++s ++D+ + W tr|S4RBD7|S4RBD7_PETMA 281 HeSCVLSLKFAHCGKWFVSTGKDNLLNAW 309 7778**************99999987766 PP == domain 7 score: 8.5 bits; conditional E-value: 0.037 SSEEEEEEETTSSEEEEEETTSE CS WD40 11 ssvtslafspdgawlasGsdDgt 33 ssv s++ s d +++++Gs D++ tr|S4RBD7|S4RBD7_PETMA 324 SSVLSCDISGDDKYIVTGSGDKK 346 4599**************87986 PP >> tr|S4RJU8|S4RJU8_PETMA PAK1 interacting protein 1 OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.1 0.0 0.11 8.3 8 38 .] 10 39 .. 2 39 .. 0.79 2 ! 20.2 0.1 7.6e-06 0.00058 9 38 .] 51 80 .. 45 80 .. 0.85 3 ! 25.2 0.2 2.1e-07 1.6e-05 1 38 [] 84 122 .. 84 122 .. 0.90 4 ! 16.7 0.0 9.9e-05 0.0077 3 37 .. 208 245 .. 206 246 .. 0.72 Alignments for each domain: == domain 1 score: 7.1 bits; conditional E-value: 0.11 ESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 8 tGH.ssvtslafspdgawlasGsdDgtvriWd 38 +H + t++ + +++a+Gs D v+++d tr|S4RJU8|S4RJU8_PETMA 10 QAHlACLTAV--AASDRFVATGSADEAVHLYD 39 3565556666..889999**********9998 PP == domain 2 score: 20.2 bits; conditional E-value: 7.6e-06 SS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 9 GH.ssvtslafspdgawlasGsdDgtvriWd 38 H + +t+l f + ++l sG Dg++ iWd tr|S4RJU8|S4RJU8_PETMA 51 QHsGTITCLEFYGSTHML-SGAQDGSICIWD 80 58444****999999997.7**********9 PP == domain 3 score: 25.2 bits; conditional E-value: 2.1e-07 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++cl+t+++H ++v++++++p+g++ +s + D+t+r W+ tr|S4RJU8|S4RJU8_PETMA 84 WKCLKTIRAHrGHVSAMSVHPSGKLALSVGTDKTLRTWN 122 79********999************776555*******8 PP == domain 4 score: 16.7 bits; conditional E-value: 9.9e-05 EEEEEESS.SSEEEEE.EETTSSE.EEEEETTSEEEEE CS WD40 3 clrtltGH.ssvtsla.fspdgaw.lasGsdDgtvriW 37 + t+++H s v +l ++g+ las+s Dg+v++W tr|S4RJU8|S4RJU8_PETMA 208 EVCTFKAHeSRVKALYtEKHNGQHvLASASSDGSVKLW 245 678999**88899997633333333677777******* PP >> tr|S4RNJ7|S4RNJ7_PETMA WD repeat and HMG-box DNA binding protein 1 OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.4 0.1 3.2e-06 0.00025 9 38 .] 11 41 .. 5 41 .. 0.93 2 ? 6.1 0.1 0.22 17 15 36 .. 99 120 .. 63 121 .. 0.72 3 ! 29.5 0.2 8.7e-09 6.7e-07 2 37 .. 127 163 .. 126 163 .. 0.92 4 ! 14.2 0.4 0.00059 0.046 16 38 .] 236 258 .. 228 258 .. 0.94 5 ? 2.0 0.0 4.2 3.2e+02 10 22 .. 270 285 .. 262 287 .. 0.75 Alignments for each domain: == domain 1 score: 21.4 bits; conditional E-value: 3.2e-06 SS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 9 GH.ssvtslafspdgawlasGsdDgtvriWd 38 GH + t+l++++ g+++++++ Dg vriWd tr|S4RNJ7|S4RNJ7_PETMA 11 GHmEGFTGLCYDDIGRYIVTCGVDGDVRIWD 41 999889************************9 PP == domain 2 score: 6.1 bits; conditional E-value: 0.22 EEEEETTSSEEE.EEETTSEEEE CS WD40 15 slafspdgawla.sGsdDgtvri 36 +l+f++dg+ la +Gs D +++ tr|S4RNJ7|S4RNJ7_PETMA 99 HLDFNHDGSKLAaAGS-DFLIKV 120 677*******983556.*99987 PP == domain 3 score: 29.5 bits; conditional E-value: 8.7e-09 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 +++ tl GH +v s+af+p g +las+s Dgtv iW tr|S4RNJ7|S4RNJ7_PETMA 127 EQQVTLCGHqAPVLSVAFDPCGVFLASSSCDGTVCIW 163 6678999**888**************9988******* PP == domain 4 score: 14.2 bits; conditional E-value: 0.00059 EEEETTSSEEEEEETTSEEEEEE CS WD40 16 lafspdgawlasGsdDgtvriWd 38 +a+ p ga +a++s Dg++ +Wd tr|S4RNJ7|S4RNJ7_PETMA 236 VAWAPGGASVAAASVDGHIVVWD 258 78********************9 PP == domain 5 score: 2.0 bits; conditional E-value: 4.2 S.SS..EEEEEEETTS CS WD40 10 H.ss..vtslafspdg 22 H ++ +++la+sp g tr|S4RNJ7|S4RNJ7_PETMA 270 HeKGysICGLAWSPQG 285 554456********98 PP >> tr|S4R928|S4R928_PETMA Utp15, U3 small nucleolar ribonucleoprotein, homolog OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.1 0.2 4 3.1e+02 12 32 .. 40 60 .. 30 65 .. 0.72 2 ? 8.9 0.0 0.028 2.2 5 37 .. 63 107 .. 59 108 .. 0.70 3 ! 24.0 0.1 4.7e-07 3.6e-05 3 38 .] 114 150 .. 112 150 .. 0.84 4 ! 12.0 0.0 0.0031 0.24 7 38 .] 160 193 .. 154 193 .. 0.72 5 ? 6.5 0.0 0.16 12 9 38 .] 204 233 .. 195 233 .. 0.77 6 ! 12.2 0.2 0.0027 0.21 5 36 .. 242 274 .. 238 274 .. 0.85 Alignments for each domain: == domain 1 score: 2.1 bits; conditional E-value: 4 SEEEEEEETTSSEEEEEETTS CS WD40 12 svtslafspdgawlasGsdDg 32 vt++ fsp + +++ s tr|S4R928|S4R928_PETMA 40 AVTHVHFSPTAPHHFAVSAST 60 39*********9986555455 PP == domain 2 score: 8.9 bits; conditional E-value: 0.028 EEEESSSS........EEEEE....EETTSSEEEEEETTSEEEEE CS WD40 5 rtltGHss........vtsla....fspdgawlasGsdDgtvriW 37 +++ +Hs +++a f dg++l++Gs+ g vr++ tr|S4R928|S4R928_PETMA 63 HVYAAHSAepqrtftrFRDVAfgatFRADGRLLVAGSEEGVVRVF 107 5666662234555444344556666******************97 PP == domain 3 score: 24.0 bits; conditional E-value: 4.7e-07 EEEEEESSSS...EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGHss...vtslafspdgawlasGsdDgtvriWd 38 +lr+++GH+ v++ f +dg ++sGsdD+t r+Wd tr|S4R928|S4R928_PETMA 114 PLRSFDGHKRavrVSC--FMSDGLRVLSGSDDCTARLWD 150 89******66644444..6999999*************9 PP == domain 4 score: 12.0 bits; conditional E-value: 0.0031 EESSSS......EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 7 ltGHss......vtslafspdgawlasGsdDgtvriWd 38 + H++ v+ l + +++++Gs+D+ vr++d tr|S4R928|S4R928_PETMA 160 FASHGDyvrsahVCTL----NPNLFITGSYDHMVRVFD 193 5555333444448888....889999**********98 PP == domain 5 score: 6.5 bits; conditional E-value: 0.16 SS.SSEEEEE.EETTSSEEEEEETTSEEEEEE CS WD40 9 GH.ssvtsla.fspdgawlasGsdDgtvriWd 38 H ++v s+ f+++g + as++ + v++Wd tr|S4R928|S4R928_PETMA 204 DHgFPVESVLaFPSEGLY-ASAG-GRLVKVWD 233 587779666659999999.7899.*******9 PP == domain 6 score: 12.2 bits; conditional E-value: 0.0027 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvri 36 l+ H + vt+l + g+ l+++s D++v++ tr|S4R928|S4R928_PETMA 242 ACLRHHhKTVTALTLNGAGDRLLTASLDRHVKV 274 556666699**********************97 PP >> tr|S4RLP9|S4RLP9_PETMA Uncharacterized protein OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.4 0.1 6.8 5.3e+02 11 29 .. 35 56 .. 23 65 .. 0.64 2 ! 23.9 0.1 5.2e-07 4e-05 14 38 .] 82 106 .. 68 106 .. 0.91 3 ! 15.5 0.4 0.00023 0.018 2 30 .. 111 140 .. 110 148 .. 0.85 4 ! 11.2 0.0 0.0054 0.42 10 38 .] 160 193 .. 147 193 .. 0.77 5 ? 8.4 0.0 0.041 3.2 7 38 .] 203 237 .. 197 237 .. 0.77 6 ? 3.5 0.0 1.4 1.1e+02 4 28 .. 244 268 .. 241 278 .. 0.75 7 ? 7.0 0.3 0.11 8.7 3 20 .. 285 303 .. 283 306 .. 0.86 Alignments for each domain: == domain 1 score: 1.4 bits; conditional E-value: 6.8 SSEEEEE..EETTSSEEEEE.E CS WD40 11 ssvtsla..fspdgawlasG.s 29 +s++sl +pd+ +++++ s tr|S4RLP9|S4RLP9_PETMA 35 QSISSLTvfGHPDNILFSASeS 56 2377777778888888754432 PP == domain 2 score: 23.9 bits; conditional E-value: 5.2e-07 EEEEEETTSSEEEEEETTSEEEEEE CS WD40 14 tslafspdgawlasGsdDgtvriWd 38 t+++ s+++++++sG++Dg+v iWd tr|S4RLP9|S4RLP9_PETMA 82 TCVSLSSNSQFVLSGGKDGSVNIWD 106 8***********************9 PP == domain 3 score: 15.5 bits; conditional E-value: 0.00023 EEEEEEESS.SSEEEEEEETTSSEEEEEET CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsd 30 ++++++t H vt+++++ + ++ asGs tr|S4RLP9|S4RLP9_PETMA 111 KLQKSFTDHsAAVTCVSYNWNDNYAASGSQ 140 6899*****555****************95 PP == domain 4 score: 11.2 bits; conditional E-value: 0.0054 S.SS...EEEEEEETTSSEEEEE..ETTSEEEEEE CS WD40 10 H.ss...vtslafspdgawlasG..sdDgtvriWd 38 H +s v +l++s ++ l+ G sdDg+v +Wd tr|S4RLP9|S4RLP9_PETMA 160 HpKSqqpVQDLQYSYFKKALF-GsvSDDGSVVLWD 193 554445599998888888899.53579*******9 PP == domain 5 score: 8.4 bits; conditional E-value: 0.041 EE.SS.SSEEEEEEETTSSEE.EEEETTSEEEEEE CS WD40 7 lt.GH.ssvtslafspdgawl.asGsdDgtvriWd 38 +t +H + ++lafsp +++l ++++ D+ + ++d tr|S4RLP9|S4RLP9_PETMA 203 FTaAHrAPASALAFSPVNDLLfVTAGLDKRIILYD 237 5547777788999*******8447788****9998 PP == domain 6 score: 3.5 bits; conditional E-value: 1.4 EEEEESSSSEEEEEEETTSSEEEEE CS WD40 4 lrtltGHssvtslafspdgawlasG 28 lr+ t+ s+ t++ f pdg+ la G tr|S4RLP9|S4RLP9_PETMA 244 LRSVTAESPLTAVEFMPDGSTLALG 268 6777777889**********99744 PP == domain 7 score: 7.0 bits; conditional E-value: 0.11 EEEEEESS.SSEEEEEEET CS WD40 3 clrtltGH.ssvtslafsp 20 +lr+ ++H +sv++l+f++ tr|S4RLP9|S4RLP9_PETMA 285 PLRSVSAHkTSVRCLRFHH 303 799*****888****9886 PP >> tr|S4RTC4|S4RTC4_PETMA Transducin beta like 1 X-linked OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.6 0.1 1.6e-07 1.2e-05 3 38 .] 168 204 .. 166 204 .. 0.91 2 ! 25.0 0.2 2.3e-07 1.8e-05 10 37 .. 236 263 .. 222 264 .. 0.79 3 ! 13.3 0.0 0.0012 0.091 2 32 .. 269 300 .] 268 300 .] 0.87 Alignments for each domain: == domain 1 score: 25.6 bits; conditional E-value: 1.6e-07 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++ +l+GH s v ++++p ++lasGs D t riWd tr|S4RTC4|S4RTC4_PETMA 168 KVSVLRGHeSEVFICSWNPALDLLASGSGDSTARIWD 204 6889****88898889***********99*******9 PP == domain 2 score: 25.0 bits; conditional E-value: 2.3e-07 SSSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 10 HssvtslafspdgawlasGsdDgtvriW 37 ++vtsl+++++g++la+Gs+Dg riW tr|S4RTC4|S4RTC4_PETMA 236 NKDVTSLDWNSEGTLLATGSYDGFARIW 263 255************************* PP == domain 3 score: 13.3 bits; conditional E-value: 0.0012 EEEEEEESS.SSEEEEEEETTSSEEEEEETTS CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDg 32 ++ tl H +++ +l+++++g++++s++ D+ tr|S4RTC4|S4RTC4_PETMA 269 NLSSTLGQHkGPIFALKWNKEGNYILSAGVDK 300 66789999*777**************999885 PP >> tr|S4RB78|S4RB78_PETMA Uncharacterized protein OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 11.8 0.1 0.0035 0.27 10 38 .] 470 498 .. 462 498 .. 0.83 2 ? 8.8 0.0 0.03 2.3 12 38 .] 519 545 .. 508 545 .. 0.91 3 ! 12.9 0.2 0.0016 0.12 14 38 .] 565 589 .. 555 589 .. 0.85 4 ! 16.0 1.3 0.00016 0.012 3 38 .] 595 631 .. 593 631 .. 0.88 5 ? 5.8 0.0 0.27 21 7 31 .. 638 665 .. 633 670 .. 0.74 6 ? 7.9 0.1 0.06 4.7 10 37 .. 684 712 .. 677 713 .. 0.85 7 ? 6.4 0.1 0.18 14 11 33 .. 727 749 .. 719 754 .. 0.82 Alignments for each domain: == domain 1 score: 11.8 bits; conditional E-value: 0.0035 SSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 10 Hss.vtslafspdgawlasGsdDgtvriWd 38 H+ v+++ s + + +G+ +g v+iWd tr|S4RB78|S4RB78_PETMA 470 HGEvVCAVTISNPTRHVYTGG-KGCVKIWD 498 8555799999999999*****.*******9 PP == domain 2 score: 8.8 bits; conditional E-value: 0.03 SEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 12 svtslafspdgawlasGsdDgtvriWd 38 ++s++ pdg+ l+ G++ t+ iWd tr|S4RB78|S4RB78_PETMA 519 YIRSCKLLPDGRTLIVGGEASTISIWD 545 499999********************9 PP == domain 3 score: 12.9 bits; conditional E-value: 0.0016 EEEEEETTSSEEEEEETTSEEEEEE CS WD40 14 tslafspdgawlasGsdDgtvriWd 38 ++la spd++ +s++ Dg++ +Wd tr|S4RB78|S4RB78_PETMA 565 YALAISPDSKVCFSCCSDGNIAVWD 589 6899*******887755*******9 PP == domain 4 score: 16.0 bits; conditional E-value: 0.00016 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++r + GH ++ ++++ s+dg+ l +G+ D+tvr Wd tr|S4RB78|S4RB78_PETMA 595 LVRQFQGHtDGASCIDISHDGTKLWTGGLDNTVRSWD 631 6899****77799***9999999747999*******9 PP == domain 5 score: 5.8 bits; conditional E-value: 0.27 EESS..SS.EEEEEEETTSSEEEEEETT CS WD40 7 ltGH..ss.vtslafspdgawlasGsdD 31 l H +s + sl ++p g wla G++ tr|S4RB78|S4RB78_PETMA 638 LQQHdfTSqIFSLGYCPTGEWLAVGMES 665 556753226**************99755 PP == domain 6 score: 7.9 bits; conditional E-value: 0.06 S.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 10 H.ssvtslafspdgawlasGsdDgtvriW 37 H s+v s++f g+w++s ++D+ + W tr|S4RB78|S4RB78_PETMA 684 HeSCVLSIKFAYCGKWFVSTGKDNLLNAW 712 7778**************99999987766 PP == domain 7 score: 6.4 bits; conditional E-value: 0.18 SSEEEEEEETTSSEEEEEETTSE CS WD40 11 ssvtslafspdgawlasGsdDgt 33 ssv s++ s d +++++Gs D++ tr|S4RB78|S4RB78_PETMA 727 SSVLSCDISVDDKYIVTGSGDKK 749 45999*************88986 PP >> tr|S4RC75|S4RC75_PETMA Denticleless E3 ubiquitin protein ligase homolog (Drosophila) OS=Petromyzon marinus OX=7757 P # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.9 0.0 9.9 7.7e+02 23 38 .] 66 81 .. 55 81 .. 0.81 2 ! 14.0 0.1 0.00069 0.054 8 38 .] 96 127 .. 88 127 .. 0.84 3 ! 25.3 0.0 1.8e-07 1.4e-05 2 38 .] 132 170 .. 131 170 .. 0.88 4 ! 19.3 0.1 1.5e-05 0.0011 11 38 .] 217 244 .. 211 244 .. 0.91 Alignments for each domain: == domain 1 score: 0.9 bits; conditional E-value: 9.9 SEEEEEETTSEEEEEE CS WD40 23 awlasGsdDgtvriWd 38 ++la s+Dg v i+d tr|S4RC75|S4RC75_PETMA 66 HLLAVPSEDGVVQIYD 81 34666699******98 PP == domain 2 score: 14.0 bits; conditional E-value: 0.00069 ESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 8 tGH.ssvtslafspdgawlasGsdDgtvriWd 38 +H + v ++a+ p + l+++s D+ ++Wd tr|S4RC75|S4RC75_PETMA 96 LAHsNAVFDCAWMPGESKLVTASGDQMAKLWD 127 48*788****99999999999877*******9 PP == domain 3 score: 25.3 bits; conditional E-value: 1.8e-07 EEEEEEESS.SSEEEEEEETTSSEEE.EEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawla.sGsdDgtvriWd 38 + l++++GH +s s+afs++ + ++ +G++Dg++++Wd tr|S4RC75|S4RC75_PETMA 132 EALGSFKGHqCSLKSVAFSQSEKAVFcTGGRDGNIMVWD 170 6689*****999*****999999975499*********9 PP == domain 4 score: 19.3 bits; conditional E-value: 1.5e-05 SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 11 ssvtslafspdgawlasGsdDgtvriWd 38 +svt++ f++++++++sG Dg +++Wd tr|S4RC75|S4RC75_PETMA 217 QSVTAVIFQDEKTLVSSGAVDGVIKVWD 244 47****************9********9 PP >> tr|S4RBT9|S4RBT9_PETMA Uncharacterized protein OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 13.4 0.2 0.0011 0.081 9 38 .] 1 31 [. 1 31 [. 0.93 2 ? 2.6 0.0 2.8 2.2e+02 14 31 .. 89 106 .. 66 109 .. 0.67 3 ? 3.4 0.0 1.5 1.2e+02 17 30 .. 134 147 .. 119 154 .. 0.79 4 ! 22.3 0.4 1.6e-06 0.00013 4 38 .] 166 201 .. 163 201 .. 0.86 5 ! 27.5 0.5 3.9e-08 3e-06 3 38 .] 279 316 .. 277 316 .. 0.86 Alignments for each domain: == domain 1 score: 13.4 bits; conditional E-value: 0.0011 SS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 9 GH.ssvtslafspdgawlasGsdDgtvriWd 38 GH + ++l +p+ + ++++s+D+ v +Wd tr|S4RBT9|S4RBT9_PETMA 1 GHtDELWGLECHPSRDRFFTCSYDKRVSMWD 31 895559************************9 PP == domain 2 score: 2.6 bits; conditional E-value: 2.8 EEEEEETTSSEEEEEETT CS WD40 14 tslafspdgawlasGsdD 31 s +f+p g+ +a G+ + tr|S4RBT9|S4RBT9_PETMA 89 QSADFHPTGTVVAVGMQK 106 3445********999865 PP == domain 3 score: 3.4 bits; conditional E-value: 1.5 EEETTSSEEEEEET CS WD40 17 afspdgawlasGsd 30 ++spdg++la Gs tr|S4RBT9|S4RBT9_PETMA 134 RYSPDGSMLAIGSH 147 48********9985 PP == domain 4 score: 22.3 bits; conditional E-value: 1.6e-06 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 l+++tGH s++t+l++s dg +l+s s D + W+ tr|S4RBT9|S4RBT9_PETMA 166 LGKCTGHsSFITHLDWSVDGEFLVSNSGDYEILYWN 201 67899**777*************97555**999997 PP == domain 5 score: 27.5 bits; conditional E-value: 3.9e-08 EEEEEESS.SSEEEEEEETTSSEEE.EEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawla.sGsdDgtvriWd 38 + r+++GH s+vt +af +d ++l+ +G+ D +v+ W+ tr|S4RBT9|S4RBT9_PETMA 279 PSRIYSGHsSHVTNVAFLHDDSYLLsTGGSDTSVMQWK 316 6799****888*****99999998647767*******6 PP >> tr|S4RAQ6|S4RAQ6_PETMA Ddb1 and cul4 associated factor 11 OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.0 0.0 9.2 7.1e+02 13 38 .] 8 33 .. 5 33 .. 0.78 2 ! 19.5 0.0 1.3e-05 0.00099 2 38 .] 36 76 .. 35 76 .. 0.80 3 ! 22.7 0.0 1.2e-06 9.4e-05 2 38 .] 86 123 .. 85 123 .. 0.95 4 ? 5.9 0.0 0.25 19 4 37 .. 168 208 .. 166 209 .. 0.73 5 ! 16.5 1.3 0.00012 0.0091 2 37 .. 214 250 .. 213 251 .. 0.90 Alignments for each domain: == domain 1 score: 1.0 bits; conditional E-value: 9.2 EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriWd 38 v sl +s d++ ++ G Dg ++++d tr|S4RAQ6|S4RAQ6_PETMA 8 VFSLTVSLDSREVLGGANDGCLYVFD 33 566777778888996778****9998 PP == domain 2 score: 19.5 bits; conditional E-value: 1.3e-05 EEEEEEE..SS.SSEEEEEEETTSSE.EEEEETTSEEEEEE CS WD40 2 qclrtlt..GH.ssvtslafspdgaw.lasGsdDgtvriWd 38 +++rtl+ +H ++v+ +af + ++ l+sG+dD +++Wd tr|S4RAQ6|S4RAQ6_PETMA 36 RNQRTLKidAHeDDVNTVAFADASSQiLFSGGDDALCKVWD 76 578888666**999*****5555555267***********9 PP == domain 3 score: 22.7 bits; conditional E-value: 1.2e-06 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 q++++l GH ++vt +++ d ++l+s s+D+++++Wd tr|S4RAQ6|S4RAQ6_PETMA 86 QPVGVLAGHrDGVTFIDTKGDARYLISNSKDQSIKLWD 123 7899*****999**************88*********9 PP == domain 4 score: 5.9 bits; conditional E-value: 0.25 EEEEESSSSE.EEEE.......EETTSSEEEEEETTSEEEEE CS WD40 4 lrtltGHssv.tsla.......fspdgawlasGsdDgtvriW 37 + t++GH +v + l fs ++++ +G+ g+v ++ tr|S4RAQ6|S4RAQ6_PETMA 168 VMTYRGH-GVlHTLIrcrfspeFSTGQRYVYTGCSTGKVVVY 208 689****.7545555566679999999999999657777665 PP == domain 5 score: 16.5 bits; conditional E-value: 0.00012 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 + + l GH +v+++ ++p+ ++s s+Dg + +W tr|S4RAQ6|S4RAQ6_PETMA 214 KVVARLNGHrACVRDVHWHPYDGKIVSTSWDGVLGLW 250 5667799**999**********************999 PP >> tr|S4RIT1|S4RIT1_PETMA WD repeat domain 59 OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.7 0.6 4.8e-05 0.0037 5 38 .] 78 113 .. 74 113 .. 0.83 2 ! 11.6 0.1 0.004 0.31 23 38 .] 141 155 .. 124 155 .. 0.82 3 ! 26.4 0.1 8.6e-08 6.6e-06 9 38 .] 168 199 .. 162 199 .. 0.89 4 ! 11.4 0.1 0.0046 0.36 2 37 .. 253 294 .. 252 295 .. 0.87 Alignments for each domain: == domain 1 score: 17.7 bits; conditional E-value: 4.8e-05 EEEESSSS.EEEEEEETTSSE.......EEEEETTSEEEEEE CS WD40 5 rtltGHss.vtslafspdgaw.......lasGsdDgtvriWd 38 ++l+GH+ +++l +w l+++s D ++iWd tr|S4RIT1|S4RIT1_PETMA 78 TSLRGHTRvISDL------DWswfeheyLVTCSVDTYIYIWD 113 689***7767***......66667777899***********9 PP == domain 2 score: 11.6 bits; conditional E-value: 0.004 SEEEEEETTSEEEEEE CS WD40 23 awlasGsdDgtvriWd 38 + la+++ Dg vriWd tr|S4RIT1|S4RIT1_PETMA 141 DTLATSH-DGDVRIWD 155 4599999.*******9 PP == domain 3 score: 26.4 bits; conditional E-value: 8.6e-08 SS.SSEEEEEEETTSSEE.EEEETTSEEEEEE CS WD40 9 GH.ssvtslafspdgawl.asGsdDgtvriWd 38 +H s +++l+++pd+ ++ a++s D++v++Wd tr|S4RIT1|S4RIT1_PETMA 168 AHlSKIHGLDWHPDNEFIlATSSQDNSVKFWD 199 79999************626889********9 PP == domain 4 score: 11.4 bits; conditional E-value: 0.0046 EEEEEEESSSS.EEEEEEETTSSE...........EEEE.ETTSEEEEE CS WD40 2 qclrtltGHss.vtslafspdgaw...........lasG.sdDgtvriW 37 +++t+ GH++ v + +w l+ s+D+++riW tr|S4RIT1|S4RIT1_PETMA 253 APVHTFVGHNDvVLEF------NWrkqreglkdfqLV-TwSRDQSLRIW 294 689******9956999......999999999999988.5588******* PP >> tr|S4RBI9|S4RBI9_PETMA Uncharacterized protein OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 11.8 0.1 0.0036 0.28 10 38 .] 473 501 .. 465 501 .. 0.83 2 ? 8.8 0.1 0.03 2.3 12 38 .] 522 548 .. 511 548 .. 0.91 3 ! 12.9 0.2 0.0016 0.12 14 38 .] 568 592 .. 558 592 .. 0.85 4 ! 16.0 1.3 0.00016 0.012 3 38 .] 598 634 .. 596 634 .. 0.88 5 ? 5.8 0.0 0.27 21 7 31 .. 641 668 .. 636 673 .. 0.74 6 ? 8.6 0.1 0.037 2.8 10 37 .. 687 715 .. 680 716 .. 0.83 7 ? 6.3 0.0 0.19 15 11 33 .. 730 752 .. 722 757 .. 0.83 Alignments for each domain: == domain 1 score: 11.8 bits; conditional E-value: 0.0036 SSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 10 Hss.vtslafspdgawlasGsdDgtvriWd 38 H+ v+++ s + + +G+ +g v+iWd tr|S4RBI9|S4RBI9_PETMA 473 HGEvVCAVTISNPTRHVYTGG-KGCVKIWD 501 8555799999999999*****.*******9 PP == domain 2 score: 8.8 bits; conditional E-value: 0.03 SEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 12 svtslafspdgawlasGsdDgtvriWd 38 ++s++ pdg+ l+ G++ t+ iWd tr|S4RBI9|S4RBI9_PETMA 522 YIRSCKLLPDGRTLIVGGEASTISIWD 548 499999********************9 PP == domain 3 score: 12.9 bits; conditional E-value: 0.0016 EEEEEETTSSEEEEEETTSEEEEEE CS WD40 14 tslafspdgawlasGsdDgtvriWd 38 ++la spd++ +s++ Dg++ +Wd tr|S4RBI9|S4RBI9_PETMA 568 YALAISPDSKVCFSCCSDGNIAVWD 592 6899*******887755*******9 PP == domain 4 score: 16.0 bits; conditional E-value: 0.00016 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++r + GH ++ ++++ s+dg+ l +G+ D+tvr Wd tr|S4RBI9|S4RBI9_PETMA 598 LVRQFQGHtDGASCIDISHDGTKLWTGGLDNTVRSWD 634 6899****77799***9999999747999*******9 PP == domain 5 score: 5.8 bits; conditional E-value: 0.27 EESS..SS.EEEEEEETTSSEEEEEETT CS WD40 7 ltGH..ss.vtslafspdgawlasGsdD 31 l H +s + sl ++p g wla G++ tr|S4RBI9|S4RBI9_PETMA 641 LQQHdfTSqIFSLGYCPTGEWLAVGMES 668 556753226**************99755 PP == domain 6 score: 8.6 bits; conditional E-value: 0.037 S.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 10 H.ssvtslafspdgawlasGsdDgtvriW 37 H s+v sl+f + g+w++s ++D + W tr|S4RBI9|S4RBI9_PETMA 687 HeSCVLSLKFAHCGKWFVSTGKDYLLNAW 715 7778**************99999876655 PP == domain 7 score: 6.3 bits; conditional E-value: 0.19 SSEEEEEEETTSSEEEEEETTSE CS WD40 11 ssvtslafspdgawlasGsdDgt 33 ssv s++ s d +++++Gs D++ tr|S4RBI9|S4RBI9_PETMA 730 SSVLSCDISVDDKYIVTGSGDKK 752 46999*************88986 PP >> tr|S4RV11|S4RV11_PETMA Uncharacterized protein OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 12.9 0.0 0.0016 0.12 18 38 .] 1 21 [. 1 21 [. 0.92 2 ! 24.1 0.2 4.6e-07 3.5e-05 12 38 .] 39 65 .. 26 65 .. 0.88 3 ! 22.9 0.2 1.1e-06 8.5e-05 5 38 .] 73 107 .] 69 107 .] 0.92 Alignments for each domain: == domain 1 score: 12.9 bits; conditional E-value: 0.0016 EETTSSEEEEEETTSEEEEEE CS WD40 18 fspdgawlasGsdDgtvriWd 38 f p+g+ +++GsdD t+r++d tr|S4RV11|S4RV11_PETMA 1 FFPNGQAFVTGSDDATCRLFD 21 789999999**********98 PP == domain 2 score: 24.1 bits; conditional E-value: 4.6e-07 SEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 12 svtslafspdgawlasGsdDgtvriWd 38 +vts+afs++g+++++G dD ++ iWd tr|S4RV11|S4RV11_PETMA 39 GVTSIAFSRSGRLVLAGYDDFNCNIWD 65 49************************9 PP == domain 3 score: 22.9 bits; conditional E-value: 1.1e-06 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++l GH + v++l + +dg +a+Gs+D +++W+ tr|S4RV11|S4RV11_PETMA 73 GVLAGHdNRVSCLGVTDDGMAVATGSWDSFLKVWN 107 6789**888*************************8 PP >> tr|S4RYJ9|S4RYJ9_PETMA WD repeat domain 55 OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.5 0.0 2.9 2.3e+02 14 37 .. 59 82 .. 51 83 .. 0.86 2 ! 15.0 0.1 0.00033 0.025 8 38 .] 97 129 .. 90 129 .. 0.88 3 ! 18.7 0.0 2.3e-05 0.0018 7 38 .] 140 171 .. 133 171 .. 0.83 4 ? 4.5 0.0 0.71 55 9 35 .. 183 210 .. 174 213 .. 0.75 5 ? 2.2 0.1 3.7 2.8e+02 22 35 .. 281 294 .. 267 295 .. 0.78 6 ! 15.3 0.1 0.00027 0.021 4 37 .. 304 339 .. 301 339 .. 0.85 Alignments for each domain: == domain 1 score: 2.5 bits; conditional E-value: 2.9 EEEEEETTSSEEEEEETTSEEEEE CS WD40 14 tslafspdgawlasGsdDgtvriW 37 t ++ +p+ + +a G+ Dg + ++ tr|S4RYJ9|S4RYJ9_PETMA 59 TTMCMHPSRDVMAVGDLDGDIFLY 82 77888********9*99***9887 PP == domain 2 score: 15.0 bits; conditional E-value: 0.00033 ESS..SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 8 tGH..ssvtslafspdgawlasGsdDgtvriWd 38 +GH + ++lafs+dga l s s+D++v ++d tr|S4RYJ9|S4RYJ9_PETMA 97 SGHhrKACRGLAFSDDGAQLYSVSKDKSVLLFD 129 58867779*************99******9998 PP == domain 3 score: 18.7 bits; conditional E-value: 2.3e-05 EESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 7 ltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++H s ++sla+ +++ a+G+dDg vr+Wd tr|S4RYJ9|S4RYJ9_PETMA 140 QKAHdSAIYSLAVIDENLT-ATGGDDGVVRVWD 171 479*777****88888888.79**********9 PP == domain 4 score: 4.5 bits; conditional E-value: 0.71 SS.SSEEEEEEETTSSEEEEEETTSEEE CS WD40 9 GH.ssvtslafspdgawlasGsdDgtvr 35 H ++v+s+ + +d++ l++ s Dgt+ tr|S4RYJ9|S4RYJ9_PETMA 183 EHtDFVSSMVVGDDKRTLLTTSGDGTLC 210 48666999998888888875544**985 PP == domain 5 score: 2.2 bits; conditional E-value: 3.7 SSEEEEEETTSEEE CS WD40 22 gawlasGsdDgtvr 35 ++++++s+Dg +r tr|S4RYJ9|S4RYJ9_PETMA 281 DNLVCTASMDGIIR 294 456789999***98 PP == domain 6 score: 15.3 bits; conditional E-value: 0.00027 EEEEESS.SS.EEEEEEETTSSEEEEEETTSEEEEE CS WD40 4 lrtltGH.ss.vtslafspdgawlasGsdDgtvriW 37 l++ H ++ + +l dg++l+s++ D+ v++W tr|S4RYJ9|S4RYJ9_PETMA 304 LGVVGQHgNDpIEALVLTGDGRFLTSCGHDQLVKFW 339 55667788556**************9988******* PP >> tr|S4RVS6|S4RVS6_PETMA TNF receptor-associated factor 7 OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 40.6 0.7 2.7e-12 2.1e-10 2 38 .] 238 275 .. 237 275 .. 0.95 2 ! 17.0 0.1 8e-05 0.0062 2 35 .. 281 313 .. 280 314 .. 0.76 Alignments for each domain: == domain 1 score: 40.6 bits; conditional E-value: 2.7e-12 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +c +t+ GH ++v++l++ p g++l+sGs D+t+++Wd tr|S4RVS6|S4RVS6_PETMA 238 KCKGTFVGHqGPVWCLCVYPTGDLLFSGSSDKTIKVWD 275 899******888****************99*******9 PP == domain 2 score: 17.0 bits; conditional E-value: 8e-05 EEEEEEESSSS.EEEEEEETTSSEEEEEETTSEEE CS WD40 2 qclrtltGHss.vtslafspdgawlasGsdDgtvr 35 +c++tl+GH++ v +l+ + ++ l sGs D+t+ tr|S4RVS6|S4RVS6_PETMA 281 KCQKTLEGHDGiVLALCIQGNK--LYSGSADCTII 313 8********5547777655555..559******96 PP >> tr|S4RZ26|S4RZ26_PETMA Excision repair cross-complementation group 8 OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.3 0.0 0.19 15 10 38 .] 43 73 .. 36 73 .. 0.76 2 ? 9.3 0.4 0.021 1.6 12 38 .] 99 129 .. 82 129 .. 0.64 3 ! 18.6 0.1 2.5e-05 0.0019 2 38 .] 181 221 .. 180 221 .. 0.85 4 ! 14.4 0.6 0.00051 0.039 9 37 .. 249 278 .. 242 279 .. 0.81 5 ! 15.7 0.1 0.0002 0.016 6 37 .. 335 367 .. 330 368 .. 0.87 Alignments for each domain: == domain 1 score: 6.3 bits; conditional E-value: 0.19 S.SS..EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 10 H.ss..vtslafspdgawlasGsdDgtvriWd 38 H s+ v +++ ++++l sG+ Dg + i++ tr|S4RZ26|S4RZ26_PETMA 43 HsSGvnVLDIDQAENNSML-SGGADGVIAIYN 73 6444446777788888887.7999****9987 PP == domain 2 score: 9.3 bits; conditional E-value: 0.021 S...EEEEE..EETTSSEEEEEETTSEEEEEE CS WD40 12 s...vtsla..fspdgawlasGsdDgtvriWd 38 + v ++ +++ g +l+ +s D+t++ Wd tr|S4RZ26|S4RZ26_PETMA 99 HqysVETVQwyTHDTGMFLS-SSFDKTLKAWD 129 12336566476666666675.666*******9 PP == domain 3 score: 18.6 bits; conditional E-value: 2.5e-05 EEEEEEESS.SSEEEEEEETTSSEE.EEE..ETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawl.asG..sdDgtvriWd 38 + +r+l GH + v + ++s + ++ a+G s+D++ ++Wd tr|S4RZ26|S4RZ26_PETMA 181 SSTRILNGHrNAVLAARWSTRHEFVlATGstSRDNSAKLWD 221 56899****999****99999999626884458*******9 PP == domain 4 score: 14.4 bits; conditional E-value: 0.00051 SS.SSEEEEEEETTSSEEEE.EETTSEEEEE CS WD40 9 GH.ssvtslafspdgawlas.GsdDgtvriW 37 H ++v++l+f +dg l++ G+ D +++W tr|S4RZ26|S4RZ26_PETMA 249 SHgGHVNGLCFTKDGLHLLTlGT-DDRLKLW 278 45444*************98567.******* PP == domain 5 score: 15.7 bits; conditional E-value: 0.0002 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 6 tltGH.ssvtslafspdgawlasGsdDgtvriW 37 l+GH + v+++ + +d + l sG+ D ++ +W tr|S4RZ26|S4RZ26_PETMA 335 QLSGHyNKVNCCEYYSDFQELYSGGNDSNILVW 367 489**999****877777779************ PP >> tr|S4R572|S4R572_PETMA COP1, E3 ubiquitin ligase OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.2 0.0 0.89 69 7 37 .. 322 352 .. 312 353 .. 0.81 2 ! 12.0 0.2 0.0031 0.24 8 38 .] 372 403 .. 366 403 .. 0.79 3 ! 14.9 0.0 0.00035 0.027 2 38 .] 408 446 .. 407 446 .. 0.78 4 ! 12.0 0.1 0.0031 0.24 12 38 .] 461 488 .. 447 488 .. 0.80 5 ! 10.5 0.0 0.0086 0.67 3 38 .] 495 530 .. 494 530 .. 0.77 6 ? 3.3 0.0 1.7 1.3e+02 3 12 .. 536 546 .. 534 557 .] 0.71 Alignments for each domain: == domain 1 score: 4.2 bits; conditional E-value: 0.89 EESSSSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 7 ltGHssvtslafspdgawlasGsdDgtvriW 37 + G s v+s+ f++d +++a ++ ++++++ tr|S4R572|S4R572_PETMA 322 YNGSSIVSSIEFDRDCDYFAIAGVTKKIKVF 352 5566448***********9977778888876 PP == domain 2 score: 12.0 bits; conditional E-value: 0.0031 ESSSSEEEEEEETTSSEEEEEET.TSEEEEEE CS WD40 8 tGHssvtslafspdgawlasGsd.DgtvriWd 38 t s ++++++s +++ ++++sd gtv +Wd tr|S4R572|S4R572_PETMA 372 TCNSKISCISWSNYHKGILASSDyEGTVILWD 403 55555****999999998766644*******9 PP == domain 3 score: 14.9 bits; conditional E-value: 0.00035 EEEEEEESS.SSEEEEE.EETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtsla.fspdgawlasGsdDgtvriWd 38 q ++++ H + +s++ + d + lasGsdD +v++W+ tr|S4R572|S4R572_PETMA 408 QRTKVFQEHeKRCWSVDfNLMDPKILASGSDDAKVKLWS 446 66789999*999999964444444499***********5 PP == domain 4 score: 12.0 bits; conditional E-value: 0.0031 SEEEEEEETTSSEEEE.EETTSEEEEEE CS WD40 12 svtslafspdgawlas.GsdDgtvriWd 38 +v++++fsp ++++++ G+ D+ v+ +d tr|S4R572|S4R572_PETMA 461 NVCCVKFSPTSRYHLAfGCADHCVHYYD 488 39***********7655778***99876 PP == domain 5 score: 10.5 bits; conditional E-value: 0.0086 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++ +++GH + v s a +g ++s+s D +++W+ tr|S4R572|S4R572_PETMA 495 PVMVFKGHrKAV-SYAKFVSGEEIVSASTDSQLKLWS 530 5789****9999.6655555555677888*******5 PP == domain 6 score: 3.3 bits; conditional E-value: 1.7 EEEEEESS.SS CS WD40 3 clrtltGH.ss 12 clr+++GH + tr|S4R572|S4R572_PETMA 536 CLRSFKGHiNE 546 9*******744 PP >> tr|S4R569|S4R569_PETMA COP1, E3 ubiquitin ligase OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.1 0.0 0.91 70 7 37 .. 332 362 .. 322 363 .. 0.81 2 ! 11.9 0.2 0.0031 0.24 8 38 .] 382 413 .. 376 413 .. 0.79 3 ! 14.9 0.0 0.00036 0.028 2 38 .] 418 456 .. 417 456 .. 0.78 4 ! 11.9 0.1 0.0031 0.24 12 38 .] 471 498 .. 457 498 .. 0.80 5 ! 10.5 0.0 0.0088 0.68 3 38 .] 505 540 .. 504 540 .. 0.77 6 ? 3.3 0.0 1.7 1.3e+02 3 12 .. 546 556 .. 544 567 .] 0.71 Alignments for each domain: == domain 1 score: 4.1 bits; conditional E-value: 0.91 EESSSSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 7 ltGHssvtslafspdgawlasGsdDgtvriW 37 + G s v+s+ f++d +++a ++ ++++++ tr|S4R569|S4R569_PETMA 332 YNGSSIVSSIEFDRDCDYFAIAGVTKKIKVF 362 5566448***********9977778888876 PP == domain 2 score: 11.9 bits; conditional E-value: 0.0031 ESSSSEEEEEEETTSSEEEEEET.TSEEEEEE CS WD40 8 tGHssvtslafspdgawlasGsd.DgtvriWd 38 t s ++++++s +++ ++++sd gtv +Wd tr|S4R569|S4R569_PETMA 382 TCNSKISCISWSNYHKGILASSDyEGTVILWD 413 55555****999999998766644*******9 PP == domain 3 score: 14.9 bits; conditional E-value: 0.00036 EEEEEEESS.SSEEEEE.EETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtsla.fspdgawlasGsdDgtvriWd 38 q ++++ H + +s++ + d + lasGsdD +v++W+ tr|S4R569|S4R569_PETMA 418 QRTKVFQEHeKRCWSVDfNLMDPKILASGSDDAKVKLWS 456 66789999*999999964444444499***********5 PP == domain 4 score: 11.9 bits; conditional E-value: 0.0031 SEEEEEEETTSSEEEE.EETTSEEEEEE CS WD40 12 svtslafspdgawlas.GsdDgtvriWd 38 +v++++fsp ++++++ G+ D+ v+ +d tr|S4R569|S4R569_PETMA 471 NVCCVKFSPTSRYHLAfGCADHCVHYYD 498 39***********7655778***99876 PP == domain 5 score: 10.5 bits; conditional E-value: 0.0088 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++ +++GH + v s a +g ++s+s D +++W+ tr|S4R569|S4R569_PETMA 505 PVMVFKGHrKAV-SYAKFVSGEEIVSASTDSQLKLWS 540 5789****9999.6655555555677888*******5 PP == domain 6 score: 3.3 bits; conditional E-value: 1.7 EEEEEESS.SS CS WD40 3 clrtltGH.ss 12 clr+++GH + tr|S4R569|S4R569_PETMA 546 CLRSFKGHiNE 556 9*******744 PP >> tr|S4RUY6|S4RUY6_PETMA Coronin OS=Petromyzon marinus OX=7757 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.5 0.2 6.3e-06 0.00049 7 37 .. 79 110 .. 74 111 .. 0.83 2 ? 10.1 0.0 0.012 0.94 6 38 .] 127 161 .. 123 161 .. 0.63 3 ! 15.6 0.0 0.00021 0.016 3 36 .. 167 201 .. 165 203 .. 0.86 4 ? 10.0 0.1 0.013 1 6 38 .] 214 249 .. 209 249 .. 0.78 Alignments for each domain: == domain 1 score: 20.5 bits; conditional E-value: 6.3e-06 EESS.SSEEEEEEETTSSEE.EEEETTSEEEEE CS WD40 7 ltGH.ssvtslafspdgawl.asGsdDgtvriW 37 + GH ++v +++++p + + as+s+D +vr+W tr|S4RUY6|S4RUY6_PETMA 79 C-GHrGNVLDIKWNPFDDNIiASCSEDASVRVW 110 3.9*888*****999999962689********* PP == domain 2 score: 10.1 bits; conditional E-value: 0.012 EEESSSS.EEEEE.EETTSSE.EEEEETTSEEEEEE CS WD40 6 tltGHss.vtsla.fspdgaw.lasGsdDgtvriWd 38 +l GHs v +l ++p l+s+++D ++ +W+ tr|S4RUY6|S4RUY6_PETMA 127 ELYGHSRrV-GLIeWHPTAVNiLISAGYDYKILVWN 161 667884464.222244444442678888*******8 PP == domain 3 score: 15.6 bits; conditional E-value: 0.00021 EEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEE CS WD40 3 clrtltGHss.vtslafspdgawlasGsdDgtvri 36 +++++ H + v sl+f+ dg++la+ ++D+ +r+ tr|S4RUY6|S4RUY6_PETMA 167 AVQVIDCHRDvVLSLSFNTDGSLLATTCKDRRLRV 201 567888995547*************999*****98 PP == domain 4 score: 10.0 bits; conditional E-value: 0.013 EEESSSSEEEEEEETTSSEEE.EEE.T..TSEEEEEE CS WD40 6 tltGHssvtslafspdgawla.sGs.d..DgtvriWd 38 ++++H v+ + f d + l+ +Gs + ++ +++Wd tr|S4RUY6|S4RUY6_PETMA 214 HCKTH-KVNRVVFLGDTKRLLtTGSsRwnNRQIMLWD 249 56777.6****999999998647864257*******9 PP >> tr|S4R5F5|S4R5F5_PETMA Uncharacterized protein OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.3 0.0 0.00056 0.043 7 38 .] 183 215 .. 179 215 .. 0.92 2 ! 30.3 0.6 5e-09 3.8e-07 1 38 [] 219 255 .. 219 255 .. 0.86 3 ? 9.8 0.2 0.014 1.1 1 37 [. 259 293 .. 259 294 .. 0.88 Alignments for each domain: == domain 1 score: 14.3 bits; conditional E-value: 0.00056 EESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 7 ltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++GH +sv+++ ++++ +l+sGs+D ++r W+ tr|S4R5F5|S4R5F5_PETMA 183 IRGHaGSVRAVLVCQERGLLLSGSYDLSIRSWN 215 68**999****99999999*************8 PP == domain 2 score: 30.3 bits; conditional E-value: 5e-09 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 g clr+++GH + vt+la +g+ l+sG +D +v++Wd tr|S4R5F5|S4R5F5_PETMA 219 GACLRIFRGHqGTVTCLA--LHGDCLVSGAKDAHVKVWD 255 57********777****4..4666699***********9 PP == domain 3 score: 9.8 bits; conditional E-value: 0.014 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 g+cl+tl+ H +++++ + +asG++ g v++W tr|S4R5F5|S4R5F5_PETMA 259 GRCLHTLK-HrRCIRAV--GANAGHVASGCEGGLVKLW 293 68*****8.97779999..7777779************ PP >> tr|S4RGJ4|S4RGJ4_PETMA Uncharacterized protein OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.6 0.0 0.65 50 22 38 .] 1 17 [. 1 17 [. 0.94 2 ! 20.8 0.7 4.8e-06 0.00037 7 38 .] 58 91 .. 52 91 .. 0.82 3 ? 9.6 0.0 0.018 1.4 6 38 .] 100 134 .. 95 134 .. 0.73 4 ? 3.1 0.1 1.9 1.5e+02 8 34 .. 148 173 .. 140 176 .. 0.74 5 ! 18.6 0.1 2.5e-05 0.0019 4 38 .] 184 220 .. 181 220 .. 0.71 6 ? 3.6 0.1 1.3 1e+02 14 38 .] 240 265 .. 227 265 .. 0.77 Alignments for each domain: == domain 1 score: 4.6 bits; conditional E-value: 0.65 SSEEEEEETTSEEEEEE CS WD40 22 gawlasGsdDgtvriWd 38 g++la Gs+++t+ +Wd tr|S4RGJ4|S4RGJ4_PETMA 1 GNFLAVGSMKPTIDVWD 17 689*************9 PP == domain 2 score: 20.8 bits; conditional E-value: 4.8e-06 EESS.SSEEEEEEETTSSEE.EEEETTSEEEEEE CS WD40 7 ltGH.ssvtslafspdgawl.asGsdDgtvriWd 38 +GH + v +l+++++ + + as+s D+tv +Wd tr|S4RGJ4|S4RGJ4_PETMA 58 SEGHtDAVLDLSWNHNARNVlASASADHTVILWD 91 46**666*****99999997257799*******9 PP == domain 3 score: 9.6 bits; conditional E-value: 0.018 EEESS.SSEEEEEEETTSSE.EEEEETTSEEEEEE CS WD40 6 tltGH.ssvtslafspdgaw.lasGsdDgtvriWd 38 tl+ H + + ++p a l+sGs+D++v ++d tr|S4RGJ4|S4RGJ4_PETMA 100 TLEQHtDKAQTVEWHPFEAQtLISGSYDKSVVLYD 134 56667333567777777777799**********98 PP == domain 4 score: 3.1 bits; conditional E-value: 1.9 ESSSSEEEEEEETTSSE.EEEEETTSEE CS WD40 8 tGHssvtslafspdgaw.lasGsdDgtv 34 +G v + +++ +++ +++++dDg v tr|S4RGJ4|S4RGJ4_PETMA 148 SGE--VERVTWNHFSPFhFLASTDDGFV 173 443..89999999999952467889977 PP == domain 5 score: 18.6 bits; conditional E-value: 2.5e-05 EEEEESS.SSEEEEE..EETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtsla..fspdgawlasGsdDgtvriWd 38 + tl +H vt+l + g l+++s D++v++Wd tr|S4RGJ4|S4RGJ4_PETMA 184 VFTLQAHeEAVTGLVlsSQVKGC-LVTSSADKHVKVWD 220 67899997779988553333333.567888*******9 PP == domain 6 score: 3.6 bits; conditional E-value: 1.3 EEEEEETTSSE.EEEEETTSEEEEEE CS WD40 14 tslafspdgaw.lasGsdDgtvriWd 38 ++ + spd+++ +a G+ + +r+Wd tr|S4RGJ4|S4RGJ4_PETMA 240 YCGSCSPDSPFtFAFGGQKDGLRVWD 265 555579999997445999*******9 PP >> tr|S4RR59|S4RR59_PETMA Excision repair cross-complementation group 8 OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.6 0.0 0.15 12 17 38 .] 42 72 .. 25 72 .. 0.68 2 ? 9.3 0.4 0.021 1.6 12 38 .] 98 128 .. 81 128 .. 0.64 3 ! 19.3 0.3 1.5e-05 0.0012 2 38 .] 177 217 .. 176 217 .. 0.86 4 ! 14.4 0.4 0.00053 0.041 7 37 .. 251 279 .. 243 280 .. 0.83 5 ! 16.2 0.1 0.00014 0.011 6 37 .. 335 368 .. 331 369 .. 0.85 Alignments for each domain: == domain 1 score: 6.6 bits; conditional E-value: 0.15 E.........EETTSSEEEEEETTSEEEEEE CS WD40 17 a.........fspdgawlasGsdDgtvriWd 38 + ++++++sG+ Dg + i++ tr|S4RR59|S4RR59_PETMA 42 HssgvnvldiDQAENKYMLSGGADGVIAIYN 72 33333333356667777889*99****9987 PP == domain 2 score: 9.3 bits; conditional E-value: 0.021 S...EEEEE..EETTSSEEEEEETTSEEEEEE CS WD40 12 s...vtsla..fspdgawlasGsdDgtvriWd 38 + v ++ +++ g +l+ +s D+t++ Wd tr|S4RR59|S4RR59_PETMA 98 HqysVETVQwyTHDTGMFLS-SSFDKTLKAWD 128 12336566476666666675.666*******9 PP == domain 3 score: 19.3 bits; conditional E-value: 1.5e-05 EEEEEEESS.SSEEEEEEETTSSEE.EEE..ETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawl.asG..sdDgtvriWd 38 + +++l GH + v + ++s + ++ a+G s+D++ ++Wd tr|S4RR59|S4RR59_PETMA 177 SSTHILNGHrNAVLAARWSTRHEFVlATGstSRDNSAKLWD 217 5789*****999****99999999626884458*******9 PP == domain 4 score: 14.4 bits; conditional E-value: 0.00053 EESSSSEEEEEEETTSSEEEE.EETTSEEEEE CS WD40 7 ltGHssvtslafspdgawlas.GsdDgtvriW 37 GH v++l+f +dg l++ G+ D +++W tr|S4RR59|S4RR59_PETMA 251 HGGH--VNGLCFTKDGLHLLTlGT-DDRLKLW 279 2355..*************98567.******* PP == domain 5 score: 16.2 bits; conditional E-value: 0.00014 E.EESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 6 t.ltGH.ssvtslafspdgawlasGsdDgtvriW 37 t l+GH + v+++ + +d + l sG+ D ++ +W tr|S4RR59|S4RR59_PETMA 335 TqLSGHyNKVNCCEYYSDFQELYSGGNDSNILVW 368 4499**999****877777779************ PP >> tr|S4RYV9|S4RYV9_PETMA Uncharacterized protein OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 10.7 0.3 0.0076 0.59 10 38 .] 20 47 .. 13 47 .. 0.85 2 ! 10.9 0.0 0.0065 0.51 9 38 .] 63 96 .. 53 96 .. 0.91 3 ? 2.2 0.0 3.9 3e+02 14 37 .. 424 439 .. 410 439 .. 0.74 4 ! 18.5 0.1 2.7e-05 0.0021 7 38 .] 463 501 .. 459 501 .. 0.88 5 ? 1.6 0.1 5.9 4.5e+02 7 34 .. 511 545 .. 505 547 .. 0.66 6 ! 12.3 0.0 0.0024 0.19 10 37 .. 562 590 .. 555 591 .. 0.78 Alignments for each domain: == domain 1 score: 10.7 bits; conditional E-value: 0.0076 SSSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 10 HssvtslafspdgawlasGsdDgtvriWd 38 H +v+sl d++ +++G+ Dg + +W+ tr|S4RYV9|S4RYV9_PETMA 20 H-CVSSLLLTEDQHTIVTGCQDGQLCLWN 47 4.4899999999999*************8 PP == domain 2 score: 10.9 bits; conditional E-value: 0.0065 SS.SSEEEEE...EETTSSEEEEEETTSEEEEEE CS WD40 9 GH.ssvtsla...fspdgawlasGsdDgtvriWd 38 GH +vt+l +d+++++s++++g +Wd tr|S4RYV9|S4RYV9_PETMA 63 GHlAGVTCLGranPLRDHPYVVSCDENGQMCLWD 96 9*999****************************9 PP == domain 3 score: 2.2 bits; conditional E-value: 3.9 EEEEEETTSSEEEEEETTSEEEEE CS WD40 14 tslafspdgawlasGsdDgtvriW 37 ++l la+G Dg + ++ tr|S4RYV9|S4RYV9_PETMA 424 HGL--------LACGYSDGCILVY 439 344........899955***9886 PP == domain 4 score: 18.5 bits; conditional E-value: 2.7e-05 EESS.SSEEEEE......EETTSSEEEEEETTSEEEEEE CS WD40 7 ltGH.ssvtsla......fspdgawlasGsdDgtvriWd 38 l GH + v++l d++wl+sG D +vr+Wd tr|S4RYV9|S4RYV9_PETMA 463 LQGHgGAVSCLLypheaaRRYDSRWLLSGAADFSVRLWD 501 6899666999999999998889999****99*******9 PP == domain 5 score: 1.6 bits; conditional E-value: 5.9 EESS.SSEEEEEEETTSSE......EEE.EETTSEE CS WD40 7 ltGH.ssvtslafspdgaw......las.GsdDgtv 34 + H +svt l +pd+ ++s +s D++v tr|S4RYV9|S4RYV9_PETMA 511 FHPHaGSVTQLLLPPDNCHetvlrcVCSvAS-DHSV 545 5567777888888888888877664332146.9887 PP == domain 6 score: 12.3 bits; conditional E-value: 0.0024 S.SSEEEEEEETTSSE.EEEEETTSEEEEE CS WD40 10 H.ssvtslafspdgaw.lasGsdDgtvriW 37 H ++v ++++ ++ l+++s Dg++++W tr|S4RYV9|S4RYV9_PETMA 562 HaFPVQAVRWRAADDLlLVCCS-DGSLYVW 590 8778999977777777445778.******* PP >> tr|S4REX6|S4REX6_PETMA EARP complex and GARP complex interacting protein 1 OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.3 0.1 3.6 2.8e+02 9 29 .. 61 84 .. 54 93 .. 0.65 2 ? 1.8 0.1 4.9 3.8e+02 18 38 .] 195 216 .. 177 216 .. 0.79 3 ! 24.1 0.0 4.4e-07 3.4e-05 9 38 .] 229 260 .. 222 260 .. 0.89 4 ! 12.2 0.2 0.0026 0.2 2 34 .. 266 300 .. 265 302 .. 0.72 5 ! 13.7 0.0 0.00088 0.068 4 36 .. 346 380 .. 344 380 .. 0.89 Alignments for each domain: == domain 1 score: 2.3 bits; conditional E-value: 3.6 SS.SS.EEEEEEETTSSEEE.EEE CS WD40 9 GH.ss.vtslafspdgawla.sGs 29 H s+ v++++ sp + ++ ++ tr|S4REX6|S4REX6_PETMA 61 CHrSGeVWHISASPGDKNVVaTCY 84 6886679***96666666541553 PP == domain 2 score: 1.8 bits; conditional E-value: 4.9 EETTSSE..EEEEETTSEEEEEE CS WD40 18 fspdgaw..lasGsdDgtvriWd 38 +sp+++ +a++ D +r Wd tr|S4REX6|S4REX6_PETMA 195 WSPHHNCtqVATAN-DTVIRGWD 216 67777777799989.*****998 PP == domain 3 score: 24.1 bits; conditional E-value: 4.4e-07 SSSS.EEEEEEETTSSE.EEEEETTSEEEEEE CS WD40 9 GHss.vtslafspdgaw.lasGsdDgtvriWd 38 +H+ v++++f+p++++ las++dD++v++Wd tr|S4REX6|S4REX6_PETMA 229 AHGQlVRDMDFNPNKQYyLASCGDDCKVKFWD 260 784469***********99************9 PP == domain 4 score: 12.2 bits; conditional E-value: 0.0026 EEEEEEESSSS.EEEEEEETTSSEEE.EEETTSEE CS WD40 2 qclrtltGHss.vtslafspdgawla.sGsdDgtv 34 +++r+l+ Hs+ v+s++++++++ l+ s+s D v tr|S4REX6|S4REX6_PETMA 266 EPVRSLEEHSHwVWSVRYNHSHDQLVlSSSSDSRV 300 689******666*****666666653366558876 PP == domain 5 score: 13.7 bits; conditional E-value: 0.00088 EEEEESS.SSEEEEEEETTSSEEEEE.ETTSEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasG.sdDgtvri 36 + t++ H +sv+++ +s +wl+++ s+Dg + i tr|S4REX6|S4REX6_PETMA 346 IATYEEHeDSVYAVEWSAADPWLFASlSYDGRLVI 380 67999**999*************999999*98865 PP >> tr|S4RCW9|S4RCW9_PETMA WD repeat domain 91 OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.1 0.1 1.7e-05 0.0013 3 38 .] 349 385 .. 348 385 .. 0.93 2 ! 22.9 0.0 1.1e-06 8.2e-05 12 38 .] 507 535 .. 493 535 .. 0.81 3 ? 8.9 0.3 0.029 2.2 2 37 .. 540 576 .. 539 577 .. 0.84 4 ? 7.3 0.0 0.09 7 5 36 .. 649 683 .. 645 683 .. 0.80 Alignments for each domain: == domain 1 score: 19.1 bits; conditional E-value: 1.7e-05 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 c+ +++ H s++ +++f+ +g+ +as + Dg v++W+ tr|S4RCW9|S4RCW9_PETMA 349 CQEEYSEHhSPIMHCKFDASGSRVASVDVDGVVKVWS 385 78899999899*************99999*******5 PP == domain 2 score: 22.9 bits; conditional E-value: 1.1e-06 S..EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 12 s..vtslafspdgawlasGsdDgtvriWd 38 + +t+++f+++g++l++G Dg +r++d tr|S4RCW9|S4RCW9_PETMA 507 PvaITCVSFNHNGNLLVCGATDGLIRLYD 535 2559***************88******98 PP == domain 3 score: 8.9 bits; conditional E-value: 0.029 EEEEEEESS.SSEEEEEEETTSSEEEE.EETTSEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlas.GsdDgtvriW 37 +cl ++++H + v+s+ fs d + ++s G Dg+ W tr|S4RCW9|S4RCW9_PETMA 540 DCLMSWRAHhGEVCSVEFSGDETGVFSmGA-DGKFTQW 576 699******777*********999985456.9987777 PP == domain 4 score: 7.3 bits; conditional E-value: 0.09 EEEESS.SSEEEEEEETTSSE.........EEEEETTSEEEE CS WD40 5 rtltGH.ssvtslafspdgaw.........lasGsdDgtvri 36 tl GH +v + w l ++s+Dg++r+ tr|S4RCW9|S4RCW9_PETMA 649 LTLGGHrAPVVTV------EWttamdcgmcL-TASMDGKIRV 683 6899**9999999......887777778744.6788****97 PP >> tr|S4RWV0|S4RWV0_PETMA F-box and WD repeat domain containing 2 OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 11.3 0.0 0.0049 0.38 5 38 .] 144 176 .. 140 176 .. 0.77 2 ? 4.5 0.1 0.7 54 1 37 [. 180 213 .. 180 214 .. 0.83 3 ! 22.7 0.1 1.3e-06 9.7e-05 2 38 .] 219 256 .. 218 256 .. 0.91 4 ? 10.0 0.0 0.012 0.96 3 37 .. 262 306 .. 260 306 .. 0.71 5 ? 4.1 0.4 0.97 75 2 38 .] 315 353 .. 312 353 .. 0.76 Alignments for each domain: == domain 1 score: 11.3 bits; conditional E-value: 0.0049 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +l GH v++l + +dg l++GsdD + ++Wd tr|S4RWV0|S4RWV0_PETMA 144 SSLLGHsARVYAL-YYKDGL-LCTGSDDLSAKLWD 176 56779*444**99.444444.589**********9 PP == domain 2 score: 4.5 bits; conditional E-value: 0.7 TEEEEEEESSSSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 1 gqclrtltGHssvtslafspdgawlasGsdDgtvriW 37 gqc++ + +H t+ ++ d + l+++s D+t+ W tr|S4RWV0|S4RWV0_PETMA 180 GQCVYGIQTH---TCADVKFDEHKLVTASFDNTLACW 213 6788888888...88888888889999999***9999 PP == domain 3 score: 22.7 bits; conditional E-value: 1.3e-06 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 + +r+++GH v s+++ ++ + l+sGs D v+iW+ tr|S4RWV0|S4RWV0_PETMA 219 KRTRHFRGHtAAVFSVDYRDELDILVSGSADFAVKIWS 256 6789*****777****99999999*************5 PP == domain 4 score: 10.0 bits; conditional E-value: 0.012 EEEEEESS.SSEEEEE..........EETTSSEEEEEETTSEEEEE CS WD40 3 clrtltGH.ssvtsla..........fspdgawlasGsdDgtvriW 37 cl tltGH +vt + sp l+s++ + +++W tr|S4RWV0|S4RWV0_PETMA 262 CLNTLTGHsEWVTKVVfqqsmveslmHSPGEFILLSAD-KYEIKVW 306 99******666888876666777773444444467777.9999999 PP == domain 5 score: 4.1 bits; conditional E-value: 0.97 EEEEEEESS.SS.EEEEE..EETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ss.vtsla..fspdgawlasGsdDgtvriWd 38 qclrtl+ ++ + +l+ + dg+ ++++s D v Wd tr|S4RWV0|S4RWV0_PETMA 315 QCLRTLSVSdDHtI-CLQpqLHCDGRTIMCAS-DLGVIQWD 353 78999985533358.88888899999999889.88888887 PP >> tr|S4RP65|S4RP65_PETMA WD repeat domain 77 OS=Petromyzon marinus OX=7757 GN=WDR77 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 22.1 0.8 1.9e-06 0.00015 3 38 .] 91 126 .. 90 126 .. 0.87 2 ! 32.4 0.7 1e-09 8.1e-08 3 38 .] 132 169 .. 130 169 .. 0.89 Alignments for each domain: == domain 1 score: 22.1 bits; conditional E-value: 1.9e-06 EEEEEE.SSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtlt.GHss.vtslafspdgawlasGsdDgtvriWd 38 c r+++ H++ vt + s +g+ ++sGs D++v++Wd tr|S4RP65|S4RP65_PETMA 91 CSRHCRyEHNDiVTRI--STSGSRVVSGSLDRSVKVWD 126 6677766898857***..*******************9 PP == domain 2 score: 32.4 bits; conditional E-value: 1e-09 EEEEEESS.SSEEEEEEETTSSEEE.EEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawla.sGsdDgtvriWd 38 + +++GH sv +++fsp+ + l+ s+s Dg++++Wd tr|S4RP65|S4RP65_PETMA 132 VVSSYRGHsASVDCVSFSPHDDNLFlSCSQDGKIMLWD 169 6789****777************855***********9 PP >> tr|S4RAG9|S4RAG9_PETMA Uncharacterized protein OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.6 0.0 2.5e-05 0.002 13 37 .. 52 76 .. 36 77 .. 0.80 2 ! 29.9 0.0 6.5e-09 5e-07 2 37 .. 82 119 .. 81 119 .. 0.83 Alignments for each domain: == domain 1 score: 18.6 bits; conditional E-value: 2.5e-05 EEEEEEETTSSEEEEEETTSEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriW 37 ++s+ p+ +++asGs+D++v++W tr|S4RAG9|S4RAG9_PETMA 52 IHSCFGGPNEDFVASGSEDHKVYVW 76 7788899****************** PP == domain 2 score: 29.9 bits; conditional E-value: 6.5e-09 EEEEEEESS.SSEEEEEEETTSSE.EEEEETTSEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgaw.lasGsdDgtvriW 37 q++ +l GH v++++++p + las+sdDgtvriW tr|S4RAG9|S4RAG9_PETMA 82 QPVAVLAGHtRAVSCVSWNPRVPSmLASASDDGTVRIW 119 8999*****555****7666666667788********* PP >> tr|S4RRP0|S4RRP0_PETMA THO complex 6 OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.8 0.0 0.015 1.2 12 34 .. 10 32 .. 1 36 [. 0.79 2 ! 13.4 0.0 0.001 0.081 2 38 .] 51 85 .. 50 85 .. 0.83 3 ! 22.5 0.4 1.4e-06 0.00011 2 38 .] 143 180 .. 142 180 .. 0.79 4 ? 5.5 0.1 0.34 26 12 37 .. 206 228 .. 188 229 .. 0.80 Alignments for each domain: == domain 1 score: 9.8 bits; conditional E-value: 0.015 SEEEEEEETTSSEEEEE.ETTSEE CS WD40 12 svtslafspdgawlasG.sdDgtv 34 v s++fsp g++la+G s g v tr|S4RRP0|S4RRP0_PETMA 10 TVFSQSFSPCGKYLAAGnS-YGRV 32 4899************966.7777 PP == domain 2 score: 13.4 bits; conditional E-value: 0.001 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++++t+t+H s+v+sl + ++l+s++ +g v+ W+ tr|S4RRP0|S4RRP0_PETMA 51 KPIYTFTAHeSPVYSL--VSTDRLLISAG-NGLVKAWN 85 799******999****..55555566899.*****998 PP == domain 3 score: 22.5 bits; conditional E-value: 1.4e-06 EEEEEEESS.SSEEEEEEETTSSE......EEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgaw......lasGsdDgtvriWd 38 +c l+GH + v++l a+ ++sG++Dgtvr Wd tr|S4RRP0|S4RRP0_PETMA 143 TCKLFLEGHtDYVHCL------ALrdhvseVLSGGEDGTVRHWD 180 6778899**555****......55555555889**********9 PP == domain 4 score: 5.5 bits; conditional E-value: 0.34 SEEEEEEETTSSEEEEEETTSEEEEE CS WD40 12 svtslafspdgawlasGsdDgtvriW 37 ++ +l d++w+++G+ + + +W tr|S4RRP0|S4RRP0_PETMA 206 WIGCL--ATDSDWMICGG-GPALSLW 228 47788..88********9.9999999 PP >> tr|S4R7W3|S4R7W3_PETMA WD repeat domain 7 OS=Petromyzon marinus OX=7757 GN=WDR7 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 11.6 0.0 0.004 0.31 10 38 .] 20 47 .. 15 47 .. 0.83 2 ? 4.7 0.0 0.61 47 9 32 .. 62 89 .. 53 100 .. 0.74 3 ? 1.2 0.0 8 6.2e+02 15 36 .. 412 432 .. 395 432 .. 0.71 4 ! 17.6 0.1 5.1e-05 0.004 4 38 .] 457 498 .. 454 498 .. 0.88 5 ! 14.9 0.1 0.00036 0.028 9 37 .. 557 586 .. 549 587 .. 0.88 Alignments for each domain: == domain 1 score: 11.6 bits; conditional E-value: 0.004 SSSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 10 HssvtslafspdgawlasGsdDgtvriWd 38 H +++ l d++ l++G++Dg v +Wd tr|S4R7W3|S4R7W3_PETMA 20 H-CISTLLLTEDHKTLVTGCYDGQVCLWD 47 5.566666778899999***********9 PP == domain 2 score: 4.7 bits; conditional E-value: 0.61 SS.SSEEEEE...EETTSSEEEEEETTS CS WD40 9 GH.ssvtsla...fspdgawlasGsdDg 32 GH s +t+l+ p+ +++s+s++g tr|S4R7W3|S4R7W3_PETMA 62 GHaSAITCLSrasDGPEEVYIVSASENG 89 9*888****9555444444477777655 PP == domain 3 score: 1.2 bits; conditional E-value: 8 EEEEETTSSEEEEEETTSEEEE CS WD40 15 slafspdgawlasGsdDgtvri 36 s+ + +g+++ +G +Dg++ i tr|S4R7W3|S4R7W3_PETMA 412 SIYIPASGQLV-CGREDGSIII 432 55566777775.7999***976 PP == domain 4 score: 17.6 bits; conditional E-value: 5.1e-05 EEEEESS.SSEEEEE......EETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtsla......fspdgawlasGsdDgtvriWd 38 rtl+GH + v+sl d++wl+sG+ D +v +Wd tr|S4R7W3|S4R7W3_PETMA 457 HRTLRGHeGKVSSLLypyqlsPRYDQRWLLSGGVDFSVILWD 498 589****76699888888888999*****************9 PP == domain 5 score: 14.9 bits; conditional E-value: 0.00036 SS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 9 GH.ssvtslafspdgawlasGsdDgtvriW 37 H ++v +++ p ++l+ G+ Dg+v++W tr|S4R7W3|S4R7W3_PETMA 557 RHlFPVQTVKWRPLDDYLVVGCSDGSVYVW 586 59899*************99977******* PP >> tr|S4RVF3|S4RVF3_PETMA Actin-related protein 2/3 complex subunit OS=Petromyzon marinus OX=7757 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.4 0.4 0.00012 0.0092 6 37 .. 48 80 .. 43 81 .. 0.83 2 ? 1.8 0.0 4.8 3.7e+02 14 29 .. 116 131 .. 111 149 .. 0.88 3 ! 16.3 0.2 0.00013 0.01 12 37 .. 159 185 .. 148 186 .. 0.81 4 ! 13.1 0.3 0.0014 0.11 3 36 .. 210 247 .. 208 249 .. 0.78 5 ? 1.5 0.0 6.4 5e+02 16 32 .. 271 286 .. 257 287 .. 0.81 6 ? 7.4 0.0 0.086 6.7 16 38 .] 364 378 .. 349 378 .. 0.79 Alignments for each domain: == domain 1 score: 16.4 bits; conditional E-value: 0.00012 EEESSSS.EEEEEEETTSSEEEEEETTSEEEEE CS WD40 6 tltGHss.vtslafspdgawlasGsdDgtvriW 37 +l Hs+ vt++++ p + +++++ D++ ++W tr|S4RVF3|S4RVF3_PETMA 48 ELAEHSGrVTGIDWAPGTDRIVTCGSDRNAYVW 80 56679445************998866******* PP == domain 2 score: 1.8 bits; conditional E-value: 4.8 EEEEEETTSSEEEEEE CS WD40 14 tslafspdgawlasGs 29 t++++sp + +a Gs tr|S4RVF3|S4RVF3_PETMA 116 TCVRWSPREDKFAVGS 131 89*****999999886 PP == domain 3 score: 16.3 bits; conditional E-value: 0.00013 S.EEEEEEETTSSEEEEEETTSEEEEE CS WD40 12 s.vtslafspdgawlasGsdDgtvriW 37 s v sl+++p++ +la+Gs D ++r++ tr|S4RVF3|S4RVF3_PETMA 159 StVLSLDWHPNNVLLAAGSCDFKCRVF 185 2599**************99*****97 PP == domain 4 score: 13.1 bits; conditional E-value: 0.0014 EEEEEESS.SS...EEEEEEETTSSEEE.EEETTSEEEE CS WD40 3 clrtltGH.ss...vtslafspdgawla.sGsdDgtvri 36 ++ +ltG s v++l+fs+dg+ la ++ D tv + tr|S4RVF3|S4RVF3_PETMA 210 LMAELTGShSAggwVHGLCFSQDGNRLAwVAH-DSTVCL 247 56677755433568*************9989*.***986 PP == domain 5 score: 1.5 bits; conditional E-value: 6.4 EEEETTSSEEEEEETTS CS WD40 16 lafspdgawlasGsdDg 32 + f +d++++a+G+ D+ tr|S4RVF3|S4RVF3_PETMA 271 ITFISDNSLVAAGH-DC 286 557789999**999.86 PP == domain 6 score: 7.4 bits; conditional E-value: 0.086 EEEETTSSEEEEEETTSEEEEEE CS WD40 16 lafspdgawlasGsdDgtvriWd 38 + l+s+++Dg+ iW+ tr|S4RVF3|S4RVF3_PETMA 364 V--------LCSSGMDGSFVIWN 378 4........777888*******8 PP >> tr|S4RE16|S4RE16_PETMA WD repeat domain 13 OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.1 0.0 0.45 34 5 36 .. 166 200 .. 164 200 .. 0.62 2 ! 21.9 0.1 2.3e-06 0.00017 7 38 .] 213 245 .. 208 245 .. 0.90 3 ? 3.3 0.0 1.7 1.3e+02 9 38 .] 405 437 .. 394 437 .. 0.74 4 ! 15.9 0.0 0.00018 0.014 5 38 .] 447 481 .. 444 481 .. 0.91 Alignments for each domain: == domain 1 score: 5.1 bits; conditional E-value: 0.45 EEEESSSS..EEEEEEETTSSE.EEEEETTSEEEE CS WD40 5 rtltGHss..vtslafspdgaw.lasGsdDgtvri 36 ++++ H++ v ++f d + +a++s Dgtv + tr|S4RE16|S4RE16_PETMA 166 HVFDQHTDaaVPKVQFANDDKTrFAACSLDGTVSV 200 77888844466445444444444688999***975 PP == domain 2 score: 21.9 bits; conditional E-value: 2.3e-06 EESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 7 ltGH.ssvtslafspdgawlasGsdDgtvriWd 38 l+GH vt++a+s ++++++s s Dg +r+Wd tr|S4RE16|S4RE16_PETMA 213 LRGHtRAVTDFAWSLSNDLMVSTSLDGALRLWD 245 89**555**************9999*******9 PP == domain 3 score: 3.3 bits; conditional E-value: 1.7 SSSSEEEEE....EETTSSEEEEEETTSEEEEEE CS WD40 9 GHssvtsla....fspdgawlasGsdDgtvriWd 38 +H +++s+ + ga ++sGs+D v+++d tr|S4RE16|S4RE16_PETMA 405 TH-HIHSIFcplmSFRQGACVVSGSEDLCVYFFD 437 45.5777766666677788899*****9998877 PP == domain 4 score: 15.9 bits; conditional E-value: 0.00018 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 +l GH +v +++f+ d ++las++ g + iW+ tr|S4RE16|S4RE16_PETMA 447 NKLQGHcAPVLDVSFNCDESLLASSDAQGMIIIWK 481 5689**888**************9988*******6 PP >> tr|S4RL25|S4RL25_PETMA Actin-related protein 2/3 complex subunit OS=Petromyzon marinus OX=7757 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.2 0.0 7.7 6e+02 12 36 .. 17 41 .. 11 43 .. 0.75 2 ! 20.1 1.2 8.5e-06 0.00066 2 37 .. 50 86 .. 49 87 .. 0.85 3 ? 2.3 0.0 3.4 2.6e+02 14 29 .. 107 122 .. 100 127 .. 0.89 4 ! 16.2 0.3 0.00014 0.011 12 37 .. 147 176 .. 139 177 .. 0.82 5 ? 8.1 0.8 0.053 4.1 7 36 .. 205 235 .. 199 237 .. 0.81 6 ? 8.5 0.1 0.038 2.9 4 38 .] 324 361 .. 321 361 .. 0.74 Alignments for each domain: == domain 1 score: 1.2 bits; conditional E-value: 7.7 SEEEEEEETTSSEEEEE.ETTSEEEE CS WD40 12 svtslafspdgawlasG.sdDgtvri 36 ++t+ a+++d + +a + ++ v+i tr|S4RL25|S4RL25_PETMA 17 PITCHAWNSDRTQIAISpN-NHEVHI 41 599**99999998875445.666665 PP == domain 2 score: 20.1 bits; conditional E-value: 8.5e-06 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 +++++l+ H +++t++++ + ++ +++++ D++ ++W tr|S4RL25|S4RL25_PETMA 50 SKVHELKEHnGHITGIDWASRSNRIVTCGSDRNAYVW 86 6899***99666****99999999987766******* PP == domain 3 score: 2.3 bits; conditional E-value: 3.4 EEEEEETTSSEEEEEE CS WD40 14 tslafspdgawlasGs 29 t++++sp + +a Gs tr|S4RL25|S4RL25_PETMA 107 TCVKWSPRENKFAVGS 122 8*******99999886 PP == domain 4 score: 16.2 bits; conditional E-value: 0.00014 S....EEEEEEETTSSEEEEEETTSEEEEE CS WD40 12 s....vtslafspdgawlasGsdDgtvriW 37 + v sl+++p++ +l++Gs D ++r++ tr|S4RL25|S4RL25_PETMA 147 PirstVLSLDWHPNNVLLVAGSCDFKCRVY 176 3444489**************99*****98 PP == domain 5 score: 8.1 bits; conditional E-value: 0.053 EESS.SSEEEEEEETTSSEEE.EEETTSEEEE CS WD40 7 ltGH.ssvtslafspdgawla.sGsdDgtvri 36 + G ++v++++fs +g+ +a ++ D t+ i tr|S4RL25|S4RL25_PETMA 205 FGGGgGWVHGVCFSGSGNKVAwVSH-DSTISI 235 5555456************988889.***987 PP == domain 6 score: 8.5 bits; conditional E-value: 0.038 EEEEESS.SSEEEEE.....EETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtsla.....fspdgawlasGsdDgtvriWd 38 l+tl H +s+t l+ s+ ++ ++G+ Dg + iWd tr|S4RL25|S4RL25_PETMA 324 LHTL--HqNSITQLSlyegdKSSCTKFCTTGM-DGALAIWD 361 5665..66799999887766556666666777.*******9 PP >> tr|S4RMD1|S4RMD1_PETMA Uncharacterized protein OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.7 0.1 2.6e-06 0.0002 8 38 .] 7 39 .. 2 39 .. 0.89 2 ? 6.3 0.3 0.19 15 14 35 .. 57 78 .. 53 81 .. 0.87 3 ? 5.4 0.0 0.38 29 10 34 .. 93 120 .. 86 123 .. 0.72 4 ? 5.0 0.1 0.5 38 4 25 .. 131 153 .. 128 159 .. 0.83 5 ? 3.8 0.1 1.1 89 3 31 .. 196 226 .. 194 228 .. 0.81 6 ! 10.9 0.2 0.0068 0.53 6 38 .] 246 280 .. 243 280 .. 0.82 Alignments for each domain: == domain 1 score: 21.7 bits; conditional E-value: 2.6e-06 ESS.SS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 8 tGH.ss.vtslafspdgawlasGsdDgtvriWd 38 GH +s v++la +p+ + as sdD+t+r+Wd tr|S4RMD1|S4RMD1_PETMA 7 QGHmQSeVWGLAAHPHLPICASVSDDKTLRVWD 39 69**555************9999*********9 PP == domain 2 score: 6.3 bits; conditional E-value: 0.19 EEEEEETTSSEEEEEETTSEEE CS WD40 14 tslafspdgawlasGsdDgtvr 35 ++++fs+dg+ la G Dg+ tr|S4RMD1|S4RMD1_PETMA 57 RCCCFSSDGKALAVGLNDGSFL 78 599***********97799865 PP == domain 3 score: 5.4 bits; conditional E-value: 0.38 SSS...EEEEEEETTSSE.EEEEETTSEE CS WD40 10 Hss...vtslafspdgaw.lasGsdDgtv 34 H +t+++fspd la +s Dg v tr|S4RMD1|S4RMD1_PETMA 93 H-RremITDIKFSPDPGKyLAVASHDGFV 120 5.13469****999977767666659865 PP == domain 4 score: 5.0 bits; conditional E-value: 0.5 EEEEESS.SSEEEEEEETTSSEE CS WD40 4 lrtltGH.ssvtslafspdgawl 25 ++t++G ++vt+l+++ g+++ tr|S4RMD1|S4RMD1_PETMA 131 VGTCKGAsGCVTHLDWDTKGKLI 153 7899999566******9999875 PP == domain 5 score: 3.8 bits; conditional E-value: 1.1 EEEEEESSSS...EEEEEEETTSSEEEEEETT CS WD40 3 clrtltGHss...vtslafspdgawlasGsdD 31 c +++ +Hs+ v++ + s+d + la+++ D tr|S4RMD1|S4RMD1_PETMA 196 CEGVWAAHSDgadVNAASLSRDRSILATAD-D 226 6677889944578*************9976.5 PP == domain 6 score: 10.9 bits; conditional E-value: 0.0068 EEESS.SSEEEEEEETTSSEEEE.EETTSEEEEEE CS WD40 6 tltGH.ssvtslafspdgawlas.GsdDgtvriWd 38 + GH + v +++ d ++l+s G+ D + +W+ tr|S4RMD1|S4RMD1_PETMA 246 QYVGHsGQVANVRWAYDDSLLLSvGGADTALVLWS 280 577**555*****999****8743889*******5 PP >> tr|S4R9E4|S4R9E4_PETMA Embryonic ectoderm development OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.8 0.0 6.1e-08 4.7e-06 2 38 .] 178 216 .. 177 216 .. 0.89 2 ! 18.6 0.1 2.4e-05 0.0019 8 37 .. 230 260 .. 223 261 .. 0.91 Alignments for each domain: == domain 1 score: 26.8 bits; conditional E-value: 6.1e-08 EEEEEEESS.SSEEEEEEETTSSEEE.EEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawla.sGsdDgtvriWd 38 qc++++ GH + ++ l+f+p + l+ s s+D+ +r+W+ tr|S4R9E4|S4R9E4_PETMA 178 QCVKHYVGHgNAINELKFHPRDPNLLlSVSKDHALRLWN 216 8********999*****888888864499*********8 PP == domain 2 score: 18.6 bits; conditional E-value: 2.4e-05 ESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 8 tGH.ssvtslafspdgawlasGsdDgtvriW 37 +GH + v s +f+ +g+ ++s+++D+++++W tr|S4R9E4|S4R9E4_PETMA 230 EGHrDEVLSADFDLYGDKIMSCGMDHSLKLW 260 7**888****************99******* PP >> tr|S4RN03|S4RN03_PETMA WD repeat domain 75 OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.1 0.0 4.9e-08 3.8e-06 1 38 [] 50 89 .. 50 89 .. 0.91 2 ? 2.1 0.4 4.1 3.2e+02 5 29 .. 258 283 .. 254 292 .. 0.79 3 ! 11.1 0.2 0.0058 0.45 12 33 .. 300 329 .. 290 331 .. 0.78 4 ? 6.2 0.0 0.2 15 12 37 .. 413 444 .. 402 445 .. 0.68 Alignments for each domain: == domain 1 score: 27.1 bits; conditional E-value: 4.9e-08 TEEEEEEESSSS.EEEEEEETTSSE.EEEEETTSEEEEEE CS WD40 1 gqclrtltGHss.vtslafspdgaw.lasGsdDgtvriWd 38 g++l++ltGH++ vt+++ +p++ + s+s+Dgt+++Wd tr|S4RN03|S4RN03_PETMA 50 GETLHELTGHGHlVTGIQLNPNNYLqAYSSSEDGTIKLWD 89 6789******8899********999556***********9 PP == domain 2 score: 2.1 bits; conditional E-value: 4.1 EEEESS.SSEEEEEEETTSSEEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGs 29 t+ H +v++la+s +g+ l +G+ tr|S4RN03|S4RN03_PETMA 258 STYHWHsEGVSDLAYSAEGTCLHTGG 283 578889666**********9986776 PP == domain 3 score: 11.1 bits; conditional E-value: 0.0058 S........EEEEEEETTSSEEEEEETTSE CS WD40 12 s........vtslafspdgawlasGsdDgt 33 + ++s+++sp ga+la+G+ D++ tr|S4RN03|S4RN03_PETMA 300 DflprlgapISSVSTSPCGALLATGHVDNS 329 3355555569****************9987 PP == domain 4 score: 6.2 bits; conditional E-value: 0.2 SEEEEE.....EETTSSE......EEEEETTSEEEEE CS WD40 12 svtsla.....fspdgaw......lasGsdDgtvriW 37 ++t+++ l+++s Dg ++W tr|S4RN03|S4RN03_PETMA 413 DITAVCfrrqpP-----GretestLVTCSLDGRFKVW 444 477776444330.....2334555889********** PP >> tr|S4RMZ8|S4RMZ8_PETMA WD repeat domain 75 OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.2 0.0 4.7e-08 3.6e-06 1 38 [] 43 82 .. 43 82 .. 0.91 2 ? 2.1 0.4 3.9 3e+02 5 29 .. 232 257 .. 228 266 .. 0.79 3 ! 11.1 0.2 0.0056 0.43 12 33 .. 274 303 .. 264 305 .. 0.78 4 ? 6.3 0.0 0.19 15 12 37 .. 389 420 .. 378 421 .. 0.68 Alignments for each domain: == domain 1 score: 27.2 bits; conditional E-value: 4.7e-08 TEEEEEEESSSS.EEEEEEETTSSE.EEEEETTSEEEEEE CS WD40 1 gqclrtltGHss.vtslafspdgaw.lasGsdDgtvriWd 38 g++l++ltGH++ vt+++ +p++ + s+s+Dgt+++Wd tr|S4RMZ8|S4RMZ8_PETMA 43 GETLHELTGHGHlVTGIQLNPNNYLqAYSSSEDGTIKLWD 82 6789******8899********999556***********9 PP == domain 2 score: 2.1 bits; conditional E-value: 3.9 EEEESS.SSEEEEEEETTSSEEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGs 29 t+ H +v++la+s +g+ l +G+ tr|S4RMZ8|S4RMZ8_PETMA 232 STYHWHsEGVSDLAYSAEGTCLHTGG 257 578889666**********9986776 PP == domain 3 score: 11.1 bits; conditional E-value: 0.0056 S........EEEEEEETTSSEEEEEETTSE CS WD40 12 s........vtslafspdgawlasGsdDgt 33 + ++s+++sp ga+la+G+ D++ tr|S4RMZ8|S4RMZ8_PETMA 274 DflprlgapISSVSTSPCGALLATGHVDNS 303 3355555569****************9987 PP == domain 4 score: 6.3 bits; conditional E-value: 0.19 SEEEEE.....EETTSSE......EEEEETTSEEEEE CS WD40 12 svtsla.....fspdgaw......lasGsdDgtvriW 37 ++t+++ l+++s Dg ++W tr|S4RMZ8|S4RMZ8_PETMA 389 DITAVCfrrqpP-----GretestLVTCSLDGRFKVW 420 477776444330.....2334555889********** PP >> tr|S4RN07|S4RN07_PETMA WD repeat domain 75 OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.7 0.0 5.2 4e+02 18 37 .. 21 39 .. 5 40 .. 0.81 2 ! 28.8 0.0 1.5e-08 1.1e-06 1 38 [] 44 83 .. 44 83 .. 0.91 3 ? 3.6 0.4 1.4 1.1e+02 5 29 .. 245 270 .. 241 279 .. 0.79 4 ! 12.4 0.2 0.0022 0.17 12 33 .. 287 316 .. 277 317 .] 0.78 Alignments for each domain: == domain 1 score: 1.7 bits; conditional E-value: 5.2 EETTSSEEEEEETTSEEEEE CS WD40 18 fspdgawlasGsdDgtvriW 37 f dg++l+++s ++++ tr|S4RN07|S4RN07_PETMA 21 FTNDGKYLLCAS-GDLIKVF 39 789*****9988.7777666 PP == domain 2 score: 28.8 bits; conditional E-value: 1.5e-08 TEEEEEEESSSS.EEEEEEETTSSE.EEEEETTSEEEEEE CS WD40 1 gqclrtltGHss.vtslafspdgaw.lasGsdDgtvriWd 38 g++l++ltGH++ vt+++ +p++ + s+s+Dgt+++Wd tr|S4RN07|S4RN07_PETMA 44 GETLHELTGHGHlVTGIQLNPNNYLqAYSSSEDGTIKLWD 83 6789******8899********999556***********9 PP == domain 3 score: 3.6 bits; conditional E-value: 1.4 EEEESS.SSEEEEEEETTSSEEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGs 29 t+ H +v++la+s +g+ l +G+ tr|S4RN07|S4RN07_PETMA 245 STYHWHsEGVSDLAYSAEGTCLHTGG 270 578889666**********9986776 PP == domain 4 score: 12.4 bits; conditional E-value: 0.0022 S........EEEEEEETTSSEEEEEETTSE CS WD40 12 s........vtslafspdgawlasGsdDgt 33 + ++s+++sp ga+la+G+ D++ tr|S4RN07|S4RN07_PETMA 287 DflprlgapISSVSTSPCGALLATGHVDNS 316 3455555669****************9986 PP >> tr|S4RL64|S4RL64_PETMA F-box and WD repeat domain containing 5 OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.7 0.2 6.9e-08 5.3e-06 4 38 .] 84 119 .. 81 119 .. 0.90 2 ? 2.0 0.1 4.5 3.5e+02 5 28 .. 398 422 .. 394 432 .. 0.72 3 ? 6.6 0.1 0.15 12 21 38 .] 482 499 .. 470 499 .. 0.83 4 ! 11.5 0.0 0.0042 0.33 10 37 .. 511 540 .. 503 541 .. 0.82 Alignments for each domain: == domain 1 score: 26.7 bits; conditional E-value: 6.9e-08 EEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 + +l+ H++ v ++afs++g ++as+s+D+tv++W+ tr|S4RL64|S4RL64_PETMA 84 VAVLKEHKDqVLHVAFSHNGFMFASCSKDCTVKVWS 119 678999*555*************************5 PP == domain 2 score: 2.0 bits; conditional E-value: 4.5 EEE...ESSSSEEEEEEETTSSEEEEE CS WD40 5 rtl...tGHssvtslafspdgawlasG 28 +l +GH v ++ spd+++l + tr|S4RL64|S4RL64_PETMA 398 DHLidvRGH--VVGMGLSPDHRLLYVS 422 55422279*..988888*****99643 PP == domain 3 score: 6.6 bits; conditional E-value: 0.15 TSSEEEEEETTSEEEEEE CS WD40 21 dgawlasGsdDgtvriWd 38 + +++asGs+D++ +iWd tr|S4RL64|S4RL64_PETMA 482 SRHFIASGSEDHNGYIWD 499 44579************9 PP == domain 4 score: 11.5 bits; conditional E-value: 0.0042 S.SSEEEEEEETTSSEEE.EEETTSEEEEE CS WD40 10 H.ssvtslafspdgawla.sGsdDgtvriW 37 H ++v+s+a sp + +a ++s D+t+++W tr|S4RL64|S4RL64_PETMA 511 HdDCVSSVALSPVEQEMAvTASADHTLKVW 540 8556999*988888887548899******* PP >> tr|S4R5N3|S4R5N3_PETMA Uncharacterized protein OS=Petromyzon marinus OX=7757 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.2 0.4 8.4e-07 6.5e-05 10 38 .] 11 40 .. 5 40 .. 0.92 2 ! 16.8 2.0 9.2e-05 0.0071 1 37 [. 47 86 .. 47 87 .. 0.81 3 ! 11.8 0.1 0.0034 0.26 11 37 .. 114 142 .. 102 143 .. 0.77 4 ? 4.8 0.4 0.58 45 13 33 .. 165 190 .. 152 192 .. 0.68 Alignments for each domain: == domain 1 score: 23.2 bits; conditional E-value: 8.4e-07 SSS.EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 10 Hss.vtslafspdgawlasGsdDgtvriWd 38 H++ +++++++ +g+ la++s D++v++Wd tr|S4R5N3|S4R5N3_PETMA 11 HKDlIHDVSYDFHGQRLATCSSDQSVKVWD 40 87889***************88*******9 PP == domain 2 score: 16.8 bits; conditional E-value: 9.2e-05 TEEEEEEESS.SSEEEEEEETTSSE........EEEEETTSEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgaw........lasGsdDgtvriW 37 ++c+ ++++H +sv+ + +w las+s D+t +W tr|S4R5N3|S4R5N3_PETMA 47 WKCTASWKTHsGSVWRV------TWahpefgqlLASCSFDRTAVVW 86 69********777****......55555555549************ PP == domain 3 score: 11.8 bits; conditional E-value: 0.0034 SSEEEEEEETTSSE..EEEEETTSEEEEE CS WD40 11 ssvtslafspdgaw..lasGsdDgtvriW 37 +svt+++f p + las+s Dg vr++ tr|S4R5N3|S4R5N3_PETMA 114 TSVTDVKFAPKHLGlvLASCSADGVVRVY 142 46999977777777555799*******98 PP == domain 4 score: 4.8 bits; conditional E-value: 0.58 EEEEEEETTSSE.....EEEEETTSE CS WD40 13 vtslafspdgaw.....lasGsdDgt 33 ++++++p++ la GsdDg+ tr|S4R5N3|S4R5N3_PETMA 165 CSCISWNPSSFRghppmLAVGSDDGS 190 46887666655577776999**9996 PP >> tr|S4RQS4|S4RQS4_PETMA Ribonucleic acid export 1 OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.5 0.8 1.5 1.1e+02 13 37 .. 40 67 .. 25 68 .. 0.70 2 ! 21.7 0.1 2.6e-06 0.0002 10 38 .] 83 112 .. 77 112 .. 0.90 3 ! 14.3 0.3 0.00055 0.042 12 38 .] 127 155 .. 117 155 .. 0.67 4 ! 12.8 0.2 0.0017 0.13 6 38 .] 254 297 .. 250 297 .. 0.80 5 ? 2.8 0.0 2.5 1.9e+02 12 31 .. 313 333 .. 302 335 .. 0.81 Alignments for each domain: == domain 1 score: 3.5 bits; conditional E-value: 1.5 EEEEEEETT...SSEEEEEETTSEEEEE CS WD40 13 vtslafspd...gawlasGsdDgtvriW 37 +++l+fsp g++l++Gs+ + vr W tr|S4RQS4|S4RQS4_PETMA 40 ISCLSFSPAalpGNYLIAGSWANDVRCW 67 6666544431115568899999999999 PP == domain 2 score: 21.7 bits; conditional E-value: 2.6e-06 S.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 10 H.ssvtslafspdgawlasGsdDgtvriWd 38 H +++ ++++s+dg+ ++++s D+t ++Wd tr|S4RQS4|S4RQS4_PETMA 83 HtGPILDVCWSDDGTKVFTASSDKTAKMWD 112 7667*************99977*******9 PP == domain 3 score: 14.3 bits; conditional E-value: 0.00055 SEEEEEEETTSSE........EEEEETTSEEEEEE CS WD40 12 svtslafspdgaw........lasGsdDgtvriWd 38 ++ + +w +++Gs+D+++++Wd tr|S4RQS4|S4RQS4_PETMA 127 PIKTI------HWikapsyscIMTGSWDKSLKFWD 155 45555......333333334489***********9 PP == domain 4 score: 12.8 bits; conditional E-value: 0.0017 EEESS.SS..........EEEEEEETTSSEEEE.EETTSEEEEEE CS WD40 6 tltGH.ss..........vtslafspdgawlas.GsdDgtvriWd 38 t++ H s+ v+++af+p + la+ Gs Dg +Wd tr|S4RQS4|S4RQS4_PETMA 254 TFKCHrSNgqtgpqdiyaVNGIAFHPVHGTLATvGS-DGRFSFWD 297 67777633477788888899***********96267.*******9 PP == domain 5 score: 2.8 bits; conditional E-value: 2.5 SEEEEEEETTSSEEE.EEETT CS WD40 12 svtslafspdgawla.sGsdD 31 ++t+++ + +g+ +a s+s+D tr|S4RQS4|S4RQS4_PETMA 313 PITACSINNNGNIFAySSSYD 333 59***********98888878 PP >> tr|S4RQE0|S4RQE0_PETMA Retinoblastoma binding protein 5 OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 12.3 0.1 0.0024 0.19 16 38 .] 41 63 .. 28 63 .. 0.87 2 ! 23.3 1.5 8.2e-07 6.4e-05 6 38 .] 72 105 .. 69 105 .. 0.92 3 ? 2.6 0.0 2.9 2.2e+02 12 38 .] 209 240 .. 196 240 .. 0.62 4 ? 9.0 0.0 0.027 2.1 16 37 .. 271 293 .. 260 294 .. 0.89 5 ? 3.3 0.1 1.6 1.3e+02 2 37 .. 299 335 .. 298 335 .. 0.81 Alignments for each domain: == domain 1 score: 12.3 bits; conditional E-value: 0.0024 EEEETTSSEEEEEETTSEEEEEE CS WD40 16 lafspdgawlasGsdDgtvriWd 38 +af++ g++la G+ Dg + +Wd tr|S4RQE0|S4RQE0_PETMA 41 CAFNRRGTLLAVGCNDGRIVVWD 63 55********************9 PP == domain 2 score: 23.3 bits; conditional E-value: 8.2e-07 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 6 tltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++++H +v+sl++s+dg+ l+s+s D+ v +Wd tr|S4RQE0|S4RQE0_PETMA 72 IISAHiHPVCSLCWSRDGHKLVSASTDNMVSLWD 105 56799889****************99*******9 PP == domain 3 score: 2.6 bits; conditional E-value: 2.9 S..EEEEEEETTSSEEEEE....ETTSEEEEEE CS WD40 12 s..vtslafspdgawlasG....sdDgtvriWd 38 + s+ f + g+ +s+ + D+ +r++d tr|S4RQE0|S4RQE0_PETMA 209 TtaIKSIEFARKGRN-SSCflinTADRIIRVYD 240 245777777777777.344222234******98 PP == domain 4 score: 9.0 bits; conditional E-value: 0.027 EEEETTSSEEEEEE.TTSEEEEE CS WD40 16 lafspdgawlasGs.dDgtvriW 37 ++fs dg ++++Gs + + ++iW tr|S4RQE0|S4RQE0_PETMA 271 CCFSGDGEYICAGSaRQHALYIW 293 78***********857******* PP == domain 5 score: 3.3 bits; conditional E-value: 1.6 EEEEEEESS.SS.EEEEEEETTSSEEEEE.ETTSEEEEE CS WD40 2 qclrtltGH.ss.vtslafspdgawlasG.sdDgtvriW 37 +++++l G + ++a++p + +a + s g v iW tr|S4RQE0|S4RQE0_PETMA 299 NLVKILHGTrGElLLDVAWHPVRPIIA-SiS-SGVVSIW 335 678888888666668**********97.559.9999999 PP >> tr|S4RZB0|S4RZB0_PETMA WD repeat domain 66 OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.2 0.2 6.9e-05 0.0053 3 38 .] 41 79 .. 39 79 .. 0.89 2 ? 3.2 0.0 1.8 1.4e+02 3 27 .. 85 112 .. 83 124 .. 0.85 3 ? 0.9 0.0 9.4 7.3e+02 15 38 .] 351 374 .. 348 374 .. 0.81 4 ? 1.8 0.1 4.9 3.8e+02 9 33 .. 388 410 .. 378 413 .. 0.80 5 ! 13.7 0.2 0.00085 0.065 7 32 .. 435 457 .. 427 463 .. 0.75 6 ! 14.6 0.3 0.00046 0.036 8 37 .. 644 677 .. 637 678 .. 0.78 Alignments for each domain: == domain 1 score: 17.2 bits; conditional E-value: 6.9e-05 EEEEEESS.SSEEEEEEETTSSEEEEEET..TSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsd..DgtvriWd 38 ++++l GH + ++++ s +++wla+++ tv +Wd tr|S4RZB0|S4RZB0_PETMA 41 TQHILQGHaNTLSCMCLSENKRWLATADTgpGSTVIVWD 79 689*****999**************98655699999998 PP == domain 2 score: 3.2 bits; conditional E-value: 1.8 EEEE.EESS..SSEEEEEEETTSSEEEE CS WD40 3 clrt.ltGH..ssvtslafspdgawlas 27 +++t ++ H ++v ++ spd +++++ tr|S4RZB0|S4RZB0_PETMA 85 PVHTlFSCHpeKGVVAMTMSPDASYIIT 112 6788679**988899**********986 PP == domain 3 score: 0.9 bits; conditional E-value: 9.4 EEEEETTSSEEE.EEETTSEEEEEE CS WD40 15 slafspdgawla.sGsdDgtvriWd 38 +la +pd ++++ + s gtv +Wd tr|S4RZB0|S4RZB0_PETMA 351 ALAAHPDRPLVCmATS-RGTVILWD 374 5778999999854668.9******9 PP == domain 4 score: 1.8 bits; conditional E-value: 4.9 SSSSEEEEEEETTSSEEEEE.ETTSE CS WD40 9 GHssvtslafspdgawlasG.sdDgt 33 + sv+sla+++ g+ +a G s Dg tr|S4RZB0|S4RZB0_PETMA 388 T--SVSSLAYDQPGNRVAIGfS-DGC 410 3..49***************55.986 PP == domain 5 score: 13.7 bits; conditional E-value: 0.00085 EESSSSEEEEEEETTSSEEEEEETTS CS WD40 7 ltGHssvtslafspdgawlasGsdDg 32 ++H vt l+fs+dg++la+ s D tr|S4RZB0|S4RZB0_PETMA 435 HEAH-AVTRLCFSHDGRYLAT-S-DT 457 2455.6*************97.5.54 PP == domain 6 score: 14.6 bits; conditional E-value: 0.00046 ESS.SS..EEEEEEETTSSEEEEEET.TSEEEEE CS WD40 8 tGH.ss..vtslafspdgawlasGsd.DgtvriW 37 +G + v ++a s+dg++++++++ Dg v++W tr|S4RZB0|S4RZB0_PETMA 644 RGAvAGggVQDVACSHDGHYVVTAGKaDGAVHVW 677 555522359************988744******* PP >> tr|S4RL58|S4RL58_PETMA Damage-specific DNA binding protein 2 OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.0 0.1 0.013 0.98 13 38 .] 18 44 .. 9 44 .. 0.87 2 ! 26.5 0.1 8e-08 6.2e-06 10 38 .] 155 185 .. 146 185 .. 0.87 3 ? 6.0 0.0 0.24 19 15 37 .. 311 333 .. 299 333 .. 0.83 Alignments for each domain: == domain 1 score: 10.0 bits; conditional E-value: 0.013 EEEEEEETTSSE.EEEEETTSEEEEEE CS WD40 13 vtslafspdgaw.lasGsdDgtvriWd 38 vt++a++p+ + la +s+ g v +Wd tr|S4RL58|S4RL58_PETMA 18 VTCVAWHPSRPGtLAVASKGGDVLLWD 44 9***9999999998889*********9 PP == domain 2 score: 26.5 bits; conditional E-value: 8e-08 S.SSEEEEEEETTSSEEE.EEETTSEEEEEE CS WD40 10 H.ssvtslafspdgawla.sGsdDgtvriWd 38 H + vt++ f+p+ wl+ s+s D+tv++Wd tr|S4RL58|S4RL58_PETMA 155 HkKKVTHVEFHPYCEWLLaSASVDQTVKLWD 185 8777************852779********9 PP == domain 3 score: 6.0 bits; conditional E-value: 0.24 EEE.EETTSSEEEEEETTSEEEEE CS WD40 15 sla.fspdgawlasGsdDgtvriW 37 s+ f+p g +lasG+ ++ +W tr|S4RL58|S4RL58_PETMA 311 SVNhFNPTGELLASGM-GHHALVW 333 44468********998.9999999 PP >> tr|S4RHR5|S4RHR5_PETMA Uncharacterized protein OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.8 0.1 0.00038 0.029 10 38 .] 93 121 .. 88 121 .. 0.80 2 ! 13.3 0.0 0.0012 0.09 5 38 .] 132 166 .. 129 166 .. 0.92 3 ? 2.3 0.0 3.4 2.6e+02 3 32 .. 219 250 .. 217 256 .. 0.69 4 ? 8.0 0.0 0.053 4.1 14 37 .. 289 312 .. 281 313 .. 0.86 Alignments for each domain: == domain 1 score: 14.8 bits; conditional E-value: 0.00038 S.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 10 H.ssvtslafspdgawlasGsdDgtvriWd 38 H + +t++a+s+ l+++s Dg+v++W+ tr|S4RHR5|S4RHR5_PETMA 93 HrDTITHVAVSKTDF-LITASQDGHVKFWK 121 766699998887755.5689*********6 PP == domain 2 score: 13.3 bits; conditional E-value: 0.0012 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++++ H + + ++++s++ga+++s +dD+ +++d tr|S4RHR5|S4RHR5_PETMA 132 KHFRSHlGAIEDISVSSEGALFCSVGDDQAMKVFD 166 799***999*************98899**999998 PP == domain 3 score: 2.3 bits; conditional E-value: 3.4 EEEEEE.SS.SSEEEEEEETTSSEEEEEETTS CS WD40 3 clrtlt.GH.ssvtslafspdgawlasGsdDg 32 +lrtl+ H s+v+ l+f+p + ++s+++ g tr|S4RHR5|S4RHR5_PETMA 219 PLRTLEkLHsSPVCLLCFNPIYKVVVSADKTG 250 56666446977797778999999999765555 PP == domain 4 score: 8.0 bits; conditional E-value: 0.053 EEEEEETTSSEEEEEETTSEEEEE CS WD40 14 tslafspdgawlasGsdDgtvriW 37 t+l fspdg+ +a+ D++vri+ tr|S4RHR5|S4RHR5_PETMA 289 TALTFSPDGSRIATIALDRKVRIF 312 7899********86455*****97 PP >> tr|S4RHR7|S4RHR7_PETMA Uncharacterized protein OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.8 0.1 0.00038 0.03 10 38 .] 100 128 .. 95 128 .. 0.80 2 ! 13.3 0.0 0.0012 0.091 5 38 .] 139 173 .. 136 173 .. 0.92 3 ? 2.3 0.0 3.4 2.7e+02 3 32 .. 226 257 .. 224 263 .. 0.69 4 ? 8.0 0.0 0.054 4.1 14 37 .. 296 319 .. 288 320 .. 0.86 Alignments for each domain: == domain 1 score: 14.8 bits; conditional E-value: 0.00038 S.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 10 H.ssvtslafspdgawlasGsdDgtvriWd 38 H + +t++a+s+ l+++s Dg+v++W+ tr|S4RHR7|S4RHR7_PETMA 100 HrDTITHVAVSKTDF-LITASQDGHVKFWK 128 766699998887755.5689*********6 PP == domain 2 score: 13.3 bits; conditional E-value: 0.0012 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ++++ H + + ++++s++ga+++s +dD+ +++d tr|S4RHR7|S4RHR7_PETMA 139 KHFRSHlGAIEDISVSSEGALFCSVGDDQAMKVFD 173 799***999*************98899**999998 PP == domain 3 score: 2.3 bits; conditional E-value: 3.4 EEEEEE.SS.SSEEEEEEETTSSEEEEEETTS CS WD40 3 clrtlt.GH.ssvtslafspdgawlasGsdDg 32 +lrtl+ H s+v+ l+f+p + ++s+++ g tr|S4RHR7|S4RHR7_PETMA 226 PLRTLEkLHsSPVCLLCFNPIYKVVVSADKTG 257 56666446977797778999999999765555 PP == domain 4 score: 8.0 bits; conditional E-value: 0.054 EEEEEETTSSEEEEEETTSEEEEE CS WD40 14 tslafspdgawlasGsdDgtvriW 37 t+l fspdg+ +a+ D++vri+ tr|S4RHR7|S4RHR7_PETMA 296 TALTFSPDGSRIATIALDRKVRIF 319 7899********86455*****97 PP >> tr|S4RJ06|S4RJ06_PETMA Uncharacterized protein OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 42.4 0.1 7.5e-13 5.8e-11 6 37 .. 53 85 .. 50 86 .. 0.93 Alignments for each domain: == domain 1 score: 42.4 bits; conditional E-value: 7.5e-13 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 6 tltGH.ssvtslafspdgawlasGsdDgtvriW 37 tl++H s+vtsl+fs +g+++a++sdD+tvriW tr|S4RJ06|S4RJ06_PETMA 53 TLKAHsSNVTSLDFSNNGKYVATCSDDRTVRIW 85 899**666************************* PP >> tr|S4RQ06|S4RQ06_PETMA SREBF chaperone OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 11.0 0.0 0.0063 0.49 7 38 .] 791 821 .. 787 821 .. 0.90 2 ? 1.6 0.3 5.9 4.5e+02 20 38 .] 1009 1026 .. 995 1026 .. 0.67 3 ? 8.6 0.0 0.036 2.8 7 37 .. 1112 1141 .. 1105 1142 .. 0.73 4 ! 17.5 0.2 5.3e-05 0.0041 2 38 .] 1147 1183 .. 1146 1183 .. 0.80 5 ! 11.4 0.6 0.0046 0.36 7 38 .] 1193 1223 .. 1187 1223 .. 0.87 Alignments for each domain: == domain 1 score: 11.0 bits; conditional E-value: 0.0063 EESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 7 ltGH.ssvtslafspdgawlasGsdDgtvriWd 38 ltGH ++ ++ dg +l+s++ g +r+Wd tr|S4RQ06|S4RQ06_PETMA 791 LTGHpMDIECV--AVDGGMLVSCCLAGQIRVWD 821 89**777**99..779999****99*******9 PP == domain 2 score: 1.6 bits; conditional E-value: 5.9 TTSSEEEEEETTSEEEEEE CS WD40 20 pdgawlasGsdDgtvriWd 38 +dg ++ ++ +g + +Wd tr|S4RQ06|S4RQ06_PETMA 1009 KDGIVVVGCG-NGRLEVWD 1026 3555566446.*******9 PP == domain 3 score: 8.6 bits; conditional E-value: 0.036 EESS.SSEEEEEEETTSSE....EEEEETTSEEEEE CS WD40 7 ltGH.ssvtslafspdgaw....lasGsdDgtvriW 37 + +H +++t l + +++Gs+D+t++++ tr|S4RQ06|S4RQ06_PETMA 1112 CPAHhKPITTL------RAaagrVVTGSEDHTLKVF 1141 56888999999......334444679********97 PP == domain 4 score: 17.5 bits; conditional E-value: 5.3e-05 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 cl tl+GH +vt + + + l+sG++Dg v +Wd tr|S4RQ06|S4RQ06_PETMA 1147 CCLFTLRGHqAGVTTA-YLDQSMTLCSGGRDGAVCLWD 1183 599******888*866.3333444789**********9 PP == domain 5 score: 11.4 bits; conditional E-value: 0.0046 EESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 7 ltGH.ssvtslafspdgawlasGsdDgtvriWd 38 GH ++v +l s ++++s++ D ++ +Wd tr|S4RQ06|S4RQ06_PETMA 1193 MYGHrGDVVCL--SCTASYVISAGVDDKLCVWD 1223 459*99999**..999999999999*******9 PP >> tr|S4RW37|S4RW37_PETMA Uncharacterized protein OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.3 0.0 0.00013 0.0099 11 37 .. 50 78 .. 39 79 .. 0.77 2 ! 19.8 0.2 1e-05 0.00077 9 38 .] 95 127 .. 88 127 .. 0.81 3 ? 6.6 0.4 0.15 12 8 37 .. 140 166 .. 130 166 .. 0.81 4 ? 2.1 0.1 4.1 3.2e+02 21 37 .. 309 325 .. 296 325 .. 0.72 Alignments for each domain: == domain 1 score: 16.3 bits; conditional E-value: 0.00013 SSEEEEEEETTSSEEEEE..ETTSEEEEE CS WD40 11 ssvtslafspdgawlasG..sdDgtvriW 37 +++t+lafspdga la+G + + + +W tr|S4RW37|S4RW37_PETMA 50 KPITALAFSPDGAHLATGeaGAAPCICVW 78 67**************9976668888888 PP == domain 2 score: 19.8 bits; conditional E-value: 1e-05 SS.SSEEEEEEETTSSEEEEEET..TSEEEEEE CS WD40 9 GH.ssvtslafspdgawlasGsd..DgtvriWd 38 GH +v + afspdg++l+s ++ D+ v +Wd tr|S4RW37|S4RW37_PETMA 95 GHqHGVACTAFSPDGRLLVSVGRrhDQAVNLWD 127 89445*************9765334*******9 PP == domain 3 score: 6.6 bits; conditional E-value: 0.15 ESSSSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 8 tGHssvtslafspdgawlasGsdDgtvriW 37 + H v +lafs+ g+ l++++ ++vr+W tr|S4RW37|S4RW37_PETMA 140 SSH--VLALAFSSCGSRLVTAG-VRHVRFW 166 455..9*************999.8999988 PP == domain 4 score: 2.1 bits; conditional E-value: 4.1 TSSEEEEE...ETTSEEEEE CS WD40 21 dgawlasG...sdDgtvriW 37 +wl G + D++v++W tr|S4RW37|S4RW37_PETMA 309 RRTWL--GclyG-DRSVYVW 325 55676..52545.******* PP >> tr|S4RGB9|S4RGB9_PETMA Prolactin regulatory element binding OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.7 0.1 2.5e-06 0.00019 12 37 .. 155 181 .. 142 182 .. 0.83 2 ! 17.0 0.0 8e-05 0.0062 2 37 .. 187 222 .. 186 223 .. 0.87 Alignments for each domain: == domain 1 score: 21.7 bits; conditional E-value: 2.5e-06 SE.EEEEEETTSSEEEEEETTSEEEEE CS WD40 12 sv.tslafspdgawlasGsdDgtvriW 37 sv s++f+ d+++la+G+ Dg++r+W tr|S4RGB9|S4RGB9_PETMA 155 SVqKSVRFNADSTLLATGGVDGHLRVW 181 4667899******************** PP == domain 2 score: 17.0 bits; conditional E-value: 8e-05 EEEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEE CS WD40 2 qclrtltGHss.vtslafspdgawlasGsdDgtvriW 37 ++l+ +++H++ v +l+f p++++++ G D ++ +W tr|S4RGB9|S4RGB9_PETMA 187 KLLHDIEAHKDeVEDLDFGPSNTLVSVGR-DFSCSVW 222 679999***556************97666.******* PP >> tr|S4RFR1|S4RFR1_PETMA Uncharacterized protein OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.0 0.0 4.2 3.3e+02 14 37 .. 43 66 .. 28 67 .. 0.76 2 ? 6.9 0.1 0.13 9.8 4 29 .. 74 107 .. 70 110 .. 0.66 3 ! 22.6 0.2 1.3e-06 0.0001 4 37 .. 134 169 .. 131 170 .. 0.83 4 ! 14.9 1.1 0.00035 0.027 1 37 [. 174 212 .. 174 213 .. 0.91 Alignments for each domain: == domain 1 score: 2.0 bits; conditional E-value: 4.2 EEEEEETTSSEEEEEETTSEEEEE CS WD40 14 tslafspdgawlasGsdDgtvriW 37 + l++ dg++la G dDg+ i+ tr|S4RFR1|S4RFR1_PETMA 43 SELSWRCDGSLLALGNDDGSMEIY 66 56778889***988999**99987 PP == domain 2 score: 6.9 bits; conditional E-value: 0.13 EEEEESS.SSEEEEEEETTSSE.............EEEEE CS WD40 4 lrtltGH.ssvtslafspdgaw.............lasGs 29 + tl H + v++l +w lasGs tr|S4RFR1|S4RFR1_PETMA 74 VCTLNSHhKTVNCL------RWllepsnqsalgllLASGS 107 4567788799****......77555555555566566776 PP == domain 3 score: 22.6 bits; conditional E-value: 1.3e-06 EEEEESS.SSEEEEEEETTSSEE.EEEETTSEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawl.asGsdDgtvriW 37 +r l GH vt+l++sp+ + l +s+s+Dgtv +W tr|S4RFR1|S4RFR1_PETMA 134 TRALAGHtARVTALDWSPHCPGLlVSASYDGTVQVW 169 56688**666****999999997258899******* PP == domain 4 score: 14.9 bits; conditional E-value: 0.00035 TEEEEEEESS.SSEEEEEEETTSSEEE.EEETTSEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgawla.sGsdDgtvriW 37 g++l ++GH + v s+a++p+ + ++ sG+ D +v+ W tr|S4RFR1|S4RFR1_PETMA 174 GEPLNNYRGHgGRVLSVAWCPSDTDVVwSGGNDSSVHKW 212 679999****666***********************988 PP >> tr|S4RC43|S4RC43_PETMA UTP4, small subunit processome component OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.0 0.0 2.1 1.6e+02 15 38 .] 21 44 .. 2 44 .. 0.72 2 ! 16.0 0.0 0.00016 0.013 12 37 .. 103 128 .. 93 129 .. 0.88 3 ! 11.6 0.0 0.0039 0.3 13 34 .. 148 168 .. 138 172 .. 0.80 4 ? 1.5 0.0 6.2 4.8e+02 12 37 .. 194 221 .. 173 222 .. 0.73 5 ? 1.7 0.0 5.4 4.2e+02 13 26 .. 394 407 .. 382 418 .. 0.77 Alignments for each domain: == domain 1 score: 3.0 bits; conditional E-value: 2.1 EEEEETTSSEEEEEETTSEEEEEE CS WD40 15 slafspdgawlasGsdDgtvriWd 38 +la++ +a G Dg++ i++ tr|S4RC43|S4RC43_PETMA 21 CLAYCAVTERIAVGRADGSIEIYN 44 5644444444888978******97 PP == domain 2 score: 16.0 bits; conditional E-value: 0.00016 SEEEEEEETTSSEEEEEETTSEEEEE CS WD40 12 svtslafspdgawlasGsdDgtvriW 37 +v+++a + +g+ la G++Dg+v+i+ tr|S4RC43|S4RC43_PETMA 103 PVWCMAPDANGSRLAVGCEDGSVKIF 128 5***********************96 PP == domain 3 score: 11.6 bits; conditional E-value: 0.0039 EEEEEEETTSSEEEEEETTSEE CS WD40 13 vtslafspdgawlasGsdDgtv 34 v s+a++p+ga la+Gs ++ tr|S4RC43|S4RC43_PETMA 148 VVSIAWHPSGARLATGS-LDNI 168 88***************.5555 PP == domain 4 score: 1.5 bits; conditional E-value: 6.2 S...EEEEEEETTSSEEEEE..ETTSEEEEE CS WD40 12 s...vtslafspdgawlasG..sdDgtvriW 37 v+++af dg+ +G s g + +W tr|S4RC43|S4RC43_PETMA 194 QetvVWAVAFLTDGTV--AGaeS-SGRLQLW 221 1455799*99999999..47555.8888888 PP == domain 5 score: 1.7 bits; conditional E-value: 5.4 EEEEEEETTSSEEE CS WD40 13 vtslafspdgawla 26 v + a+sp g+wla tr|S4RC43|S4RC43_PETMA 394 VGCSAVSPCGTWLA 407 767779******97 PP >> tr|S4RFR8|S4RFR8_PETMA Uncharacterized protein OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.0 0.0 4.4 3.4e+02 14 37 .. 50 73 .. 35 74 .. 0.76 2 ? 6.8 0.1 0.13 10 4 29 .. 81 114 .. 77 117 .. 0.66 3 ! 22.5 0.2 1.4e-06 0.00011 4 37 .. 141 176 .. 138 177 .. 0.83 4 ! 14.9 1.1 0.00037 0.029 1 37 [. 181 219 .. 181 220 .. 0.91 Alignments for each domain: == domain 1 score: 2.0 bits; conditional E-value: 4.4 EEEEEETTSSEEEEEETTSEEEEE CS WD40 14 tslafspdgawlasGsdDgtvriW 37 + l++ dg++la G dDg+ i+ tr|S4RFR8|S4RFR8_PETMA 50 SELSWRCDGSLLALGNDDGSMEIY 73 56778889***988999**99987 PP == domain 2 score: 6.8 bits; conditional E-value: 0.13 EEEEESS.SSEEEEEEETTSSE.............EEEEE CS WD40 4 lrtltGH.ssvtslafspdgaw.............lasGs 29 + tl H + v++l +w lasGs tr|S4RFR8|S4RFR8_PETMA 81 VCTLNSHhKTVNCL------RWllepsnqsalgllLASGS 114 4567788799****......77555555555566566776 PP == domain 3 score: 22.5 bits; conditional E-value: 1.4e-06 EEEEESS.SSEEEEEEETTSSEE.EEEETTSEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawl.asGsdDgtvriW 37 +r l GH vt+l++sp+ + l +s+s+Dgtv +W tr|S4RFR8|S4RFR8_PETMA 141 TRALAGHtARVTALDWSPHCPGLlVSASYDGTVQVW 176 56688**666****999999997258899******* PP == domain 4 score: 14.9 bits; conditional E-value: 0.00037 TEEEEEEESS.SSEEEEEEETTSSEEE.EEETTSEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgawla.sGsdDgtvriW 37 g++l ++GH + v s+a++p+ + ++ sG+ D +v+ W tr|S4RFR8|S4RFR8_PETMA 181 GEPLNNYRGHgGRVLSVAWCPSDTDVVwSGGNDSSVHKW 219 679999****666***********************988 PP >> tr|S4RCC0|S4RCC0_PETMA SEC13 homolog, nuclear pore and COPII coat complex component OS=Petromyzon marinus OX=7757 PE # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.9 0.0 8.3e-05 0.0064 8 38 .] 10 41 .. 4 41 .. 0.84 2 ! 20.0 0.1 8.6e-06 0.00067 5 37 .. 51 86 .. 47 87 .. 0.79 3 ? 1.7 0.0 5.3 4.1e+02 3 15 .. 95 108 .. 93 112 .] 0.70 Alignments for each domain: == domain 1 score: 16.9 bits; conditional E-value: 8.3e-05 ESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 8 tGH.ssvtslafspdgawlasGsdDgtvriWd 38 t+H + +++ + + +g+ la++s D+tv+i+d tr|S4RCC0|S4RCC0_PETMA 10 TAHlDMIHDAQMDYYGNRLATCSSDRTVKIFD 41 46744488888999********88******98 PP == domain 2 score: 20.0 bits; conditional E-value: 8.6e-06 EEEESS.SSEEEEEEETTSSE........EEEEETTSEEEEE CS WD40 5 rtltGH.ssvtslafspdgaw........lasGsdDgtvriW 37 l+GH ++v+ + aw las+ +D++v iW tr|S4RCC0|S4RCC0_PETMA 51 ADLRGHeGPVWQV------AWahamygnvLASCAYDRKVIIW 86 5699**999****......55555555559***99******* PP == domain 3 score: 1.7 bits; conditional E-value: 5.3 EEEEEESS.SSEEE CS WD40 3 clrtltGH.ssvts 15 ++++ GH ssv + tr|S4RCC0|S4RCC0_PETMA 95 RIYEYAGHeSSVLG 108 577899**998844 PP >> tr|S4RFU2|S4RFU2_PETMA Phosphoinositide-3-kinase, regulatory subunit 4 OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.2 0.4 8.5e-07 6.5e-05 4 38 .] 327 362 .. 324 362 .. 0.91 2 ? 8.9 0.0 0.028 2.1 9 36 .. 384 409 .. 374 411 .. 0.88 3 ? 3.3 0.4 1.6 1.3e+02 13 38 .] 485 510 .. 476 510 .. 0.83 4 ? 5.2 0.3 0.41 32 5 38 .] 520 555 .. 514 555 .. 0.81 5 ? 6.1 0.0 0.22 17 21 38 .] 593 610 .. 573 610 .. 0.69 Alignments for each domain: == domain 1 score: 23.2 bits; conditional E-value: 8.5e-07 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 + +l H + v+ + + +d+a++a++s Dgtv++Wd tr|S4RFU2|S4RFU2_PETMA 327 VAHLHEHrGAVNRIGVAHDHAYFATCSNDGTVKVWD 362 6788889888*************************9 PP == domain 2 score: 8.9 bits; conditional E-value: 0.028 SSSSEEEEEEETTSSEEEEEETTSEEEE CS WD40 9 GHssvtslafspdgawlasGsdDgtvri 36 GH + +laf++ ++ la++sd+g++++ tr|S4RFU2|S4RFU2_PETMA 384 GH--IKALAFCQASQSLATASDNGSIHV 409 89..*********************987 PP == domain 3 score: 3.3 bits; conditional E-value: 1.6 EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriWd 38 +ts+a++ + w+a G+ gt Wd tr|S4RFU2|S4RFU2_PETMA 485 ITSFAVDIRQCWIAVGTSSGTMVCWD 510 89999999999*****66*******8 PP == domain 4 score: 5.2 bits; conditional E-value: 0.41 EEEESSSSEEEEE.EETTSSEEEEE..ETTSEEEEEE CS WD40 5 rtltGHssvtsla.fspdgawlasG..sdDgtvriWd 38 +t +H ++ l+ s++++w++++ s ++ v +W+ tr|S4RFU2|S4RFU2_PETMA 520 HTHPTHARIRRLSmHSDHHSWVLAAvqS-NNEVSMWN 555 44456655*****9*******9988788.*******8 PP == domain 5 score: 6.1 bits; conditional E-value: 0.22 TSSEEE.EEETTSEEEEEE CS WD40 21 dgawla.sGsdDgtvriWd 38 +++l+ +Gs D +r Wd tr|S4RFU2|S4RFU2_PETMA 593 GNPFLLtAGS-DMRIRYWD 610 4455651677.*******9 PP >> tr|S4RM77|S4RM77_PETMA WD repeat domain 92 OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.8 0.0 0.27 21 23 38 .] 58 73 .. 46 73 .. 0.87 2 ! 24.4 0.0 3.6e-07 2.8e-05 3 38 .] 80 122 .. 79 122 .. 0.77 3 ? 3.4 0.1 1.6 1.2e+02 15 38 .] 158 173 .. 143 173 .. 0.73 4 ? 3.4 0.0 1.5 1.2e+02 8 38 .] 233 265 .] 226 265 .] 0.68 Alignments for each domain: == domain 1 score: 5.8 bits; conditional E-value: 0.27 SEEEEEETTSEEEEEE CS WD40 23 awlasGsdDgtvriWd 38 + la+G+ Dg+ iW+ tr|S4RM77|S4RM77_PETMA 58 RHLATGDFDGNMSIWN 73 5699**99*******8 PP == domain 2 score: 24.4 bits; conditional E-value: 3.6e-07 EEEEEESSSS.EEEEE......EETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGHss.vtsla......fspdgawlasGsdDgtvriWd 38 +++t +GH+ +++++ + + +++Gs+Dgtv++Wd tr|S4RM77|S4RM77_PETMA 80 PVYTVKGHTEiINCIDgvgglgVGEGAPEIVTGSRDGTVKVWD 122 57899***5548***6666666444445599***********9 PP == domain 3 score: 3.4 bits; conditional E-value: 1.6 EEEEETTSSEEEEEETTSEEEEEE CS WD40 15 slafspdgawlasGsdDgtvriWd 38 + +++G d+g ++++d tr|S4RM77|S4RM77_PETMA 158 RC--------VCAGYDNGDIKLFD 173 33........678999******98 PP == domain 4 score: 3.4 bits; conditional E-value: 1.5 ESSSS....EEEEEEETTSSE.EEEEETTSEEEEEE CS WD40 8 tGHss....vtslafspdgaw.lasGsdDgtvriWd 38 ++H+s v++l +++ + +++G+ g++ +W+ tr|S4RM77|S4RM77_PETMA 233 KAHKStvwlVRHL--PQNRDIfMTTGG-SGNLNLWK 265 4784446666777..555555256899.*******6 PP >> tr|S4RPY1|S4RPY1_PETMA SEC31 homolog B, COPII coat complex component OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.3 0.0 0.00027 0.021 10 38 .] 119 149 .. 112 149 .. 0.85 2 ? 2.1 0.0 4.1 3.2e+02 12 38 .] 168 195 .. 155 195 .. 0.73 3 ! 10.7 0.0 0.0075 0.58 2 38 .] 249 287 .. 248 287 .. 0.77 Alignments for each domain: == domain 1 score: 15.3 bits; conditional E-value: 0.00027 S.SSEEEEEEETTSSEE.EEEETTSEEEEEE CS WD40 10 H.ssvtslafspdgawl.asGsdDgtvriWd 38 H ++v++l+f+p +a l asG D ++iWd tr|S4RPY1|S4RPY1_PETMA 119 HtGPVRALDFNPFQANLlASGANDSEIYIWD 149 8677*******999997257888*******9 PP == domain 2 score: 2.1 bits; conditional E-value: 4.1 SEEEEEEETTSSE.EEEEETTSEEEEEE CS WD40 12 svtslafspdgaw.lasGsdDgtvriWd 38 +v ++a+++ + las+s g+ +Wd tr|S4RPY1|S4RPY1_PETMA 168 DVVCVAWNRQVQHiLASASPSGKAVVWD 195 4889977777777445668899999998 PP == domain 3 score: 10.7 bits; conditional E-value: 0.0075 EEEEEEESS.SSEEEEE.EETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtsla.fspdgawlasGsdDgtvriWd 38 ++l++l+ H ++ ++a + d +l+s+ +D+ + W+ tr|S4RPY1|S4RPY1_PETMA 249 SPLKVLESHsRGILAIAwCQADPELLLSCAKDNRILCWN 287 58999****544999974444444478***********8 PP >> tr|S4RP68|S4RP68_PETMA Uncharacterized protein OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.2 0.0 0.88 68 10 37 .. 493 524 .. 485 525 .. 0.73 2 ! 12.8 0.1 0.0017 0.13 9 37 .. 537 570 .. 529 571 .. 0.79 3 ? 7.5 0.0 0.082 6.3 3 29 .. 591 618 .. 589 621 .. 0.82 4 ! 10.9 0.0 0.0069 0.53 18 37 .. 689 708 .. 673 709 .. 0.88 Alignments for each domain: == domain 1 score: 4.2 bits; conditional E-value: 0.88 SSSE.EEEE...EETTSSEEE.EEETTSEEEEE CS WD40 10 Hssv.tsla...fspdgawla.sGsdDgtvriW 37 H sv t++ + d+++++ G +D++ r++ tr|S4RP68|S4RP68_PETMA 493 H-SVpTCVNtftVTADNRFVMlGGFWDKSFRVY 524 7.56666655558899999753677******98 PP == domain 2 score: 12.8 bits; conditional E-value: 0.0017 SSSS.EEEEE....EETTSSEEEEEETTSEEEEE CS WD40 9 GHss.vtsla....fspdgawlasGsdDgtvriW 37 GH + vt+la ++asGs+D tv +W tr|S4RP68|S4RP68_PETMA 537 GHWDvVTCLArsevGVGGDCYVASGSRDATVLLW 570 993348***9999766666669************ PP == domain 3 score: 7.5 bits; conditional E-value: 0.082 EEEEEESS.SSEEEEEEETTSSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGs 29 + +ltGH + vts+a+s + + +sGs tr|S4RP68|S4RP68_PETMA 591 PRAILTGHdTEVTSVAVSTELGLAISGS 618 56789***777****9998888877876 PP == domain 4 score: 10.9 bits; conditional E-value: 0.0069 EETTSSEEEEEETTSEEEEE CS WD40 18 fspdgawlasGsdDgtvriW 37 s dg+++++G+d+g v +W tr|S4RP68|S4RP68_PETMA 689 LSADGQYVLTGGDKGVVEVW 708 688***************** PP >> tr|S4RND1|S4RND1_PETMA WD repeat domain 43 OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.5 0.1 0.69 53 14 38 .] 9 32 .. 3 32 .. 0.68 2 ! 21.0 1.1 4.3e-06 0.00033 8 37 .. 111 141 .. 103 142 .. 0.84 3 ! 11.8 0.1 0.0035 0.27 8 38 .] 153 182 .. 147 182 .. 0.83 4 ? 5.7 0.1 0.29 23 3 37 .. 188 237 .. 186 238 .. 0.50 Alignments for each domain: == domain 1 score: 4.5 bits; conditional E-value: 0.69 EEEEEETTSSEEEEEETTSEEEEEE CS WD40 14 tslafspdgawlasGsdDgtvriWd 38 ++ + +p + + a +s Dg v++Wd tr|S4RND1|S4RND1_PETMA 9 CAYSSDPAKCF-AVASPDGRVYVWD 32 33445555555.55899*******9 PP == domain 2 score: 21.0 bits; conditional E-value: 4.3e-06 ESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 8 tGH.ssvtslafspdgawlasGsdDgtvriW 37 GH + v++++++p+ + l s+sdD+++ W tr|S4RND1|S4RND1_PETMA 111 GGHdGRVNCVQWHPETDSLYSCSDDQHIVEW 141 39*666*********************9877 PP == domain 3 score: 11.8 bits; conditional E-value: 0.0035 ESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 8 tGH.ssvtslafspdgawlasGsdDgtvriWd 38 +G ++v+sl+ spdg+ l+ + + +++Wd tr|S4RND1|S4RND1_PETMA 153 KGDkGGVSSLCLSPDGKRLI-SA-GRAIKLWD 182 566455*************9.57.9******9 PP == domain 4 score: 5.7 bits; conditional E-value: 0.29 EEEEEESS.SS....................EEEEEEETTSSEEEEE.ETTSEEEEE CS WD40 3 clrtltGH.ss....................vtslafspdgawlasG.sdDgtvriW 37 +lr++tGH + +t+l ++++G D+ + +W tr|S4RND1|S4RND1_PETMA 188 LLRKFTGHaTTvslmmfatthppndieafdgITGL-------YFVTGaAHDRFLNVW 237 67777777444233333333333333333344444.......366775349999999 PP >> tr|S4RZE3|S4RZE3_PETMA Uncharacterized protein OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.9 0.2 3.2e-09 2.5e-07 3 38 .] 97 133 .. 95 133 .. 0.94 2 ? 4.1 0.0 0.96 74 12 36 .. 149 175 .. 136 176 .. 0.74 Alignments for each domain: == domain 1 score: 30.9 bits; conditional E-value: 3.2e-09 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 + rtl+GH + v ++++++d++ l+s+s Dg+v +Wd tr|S4RZE3|S4RZE3_PETMA 97 TRRTLKGHgNKVLCMDWCKDKRRLVSSSQDGKVIVWD 133 6799****888*************************9 PP == domain 2 score: 4.1 bits; conditional E-value: 0.96 SEEEEEEETTSSEEEEEET..TSEEEE CS WD40 12 svtslafspdgawlasGsd..Dgtvri 36 +v ++a+ p+g +a+G++ D+++ + tr|S4RZE3|S4RZE3_PETMA 149 WVMACAYAPSGCAIACGDRglDNKCSV 175 488999********9885345888776 PP >> tr|S4RB54|S4RB54_PETMA SEC13 homolog, nuclear pore and COPII coat complex component OS=Petromyzon marinus OX=7757 PE # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.2 0.0 0.022 1.7 11 37 .. 27 44 .. 18 45 .. 0.71 2 ! 16.5 0.1 0.00011 0.0089 5 37 .. 55 92 .. 51 93 .. 0.83 3 ! 13.8 1.2 0.00084 0.065 10 37 .. 108 138 .. 104 139 .. 0.81 4 ? 0.9 0.1 9.4 7.3e+02 21 32 .. 143 154 .. 140 161 .. 0.56 Alignments for each domain: == domain 1 score: 9.2 bits; conditional E-value: 0.022 SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 11 ssvtslafspdgawlasGsdDgtvriW 37 ++++ + + sG+ D+ v+iW tr|S4RB54|S4RB54_PETMA 27 KPIRRF--------V-SGGCDNLVKIW 44 455555........7.6766******* PP == domain 2 score: 16.5 bits; conditional E-value: 0.00011 EEEESS.SSEEEEEEETTSSE..........EEEEETTSEEEEE CS WD40 5 rtltGH.ssvtslafspdgaw..........lasGsdDgtvriW 37 ++l++H ++v+++ aw +as+ Dg v++W tr|S4RB54|S4RB54_PETMA 55 QKLEAHsDWVRDV------AWapsiglpistIASCAQDGRVYVW 92 6789**666****......77666676999999*********** PP == domain 3 score: 13.8 bits; conditional E-value: 0.00084 S.SS..EEEEEEETTSSEEE.EEETTSEEEEE CS WD40 10 H.ss..vtslafspdgawla.sGsdDgtvriW 37 H ++ v+++++s g+ la sG+ D+ v +W tr|S4RB54|S4RB54_PETMA 108 HkFGdvVWHVSWSITGSILAvSGG-DNRVTLW 138 5322467***********975888.******* PP == domain 4 score: 0.9 bits; conditional E-value: 9.4 TSSEEEEEETTS CS WD40 21 dgawlasGsdDg 32 g+w++ ++ D+ tr|S4RB54|S4RB54_PETMA 143 QGQWVCVSDVDK 154 566665444444 PP >> tr|S4R4K3|S4R4K3_PETMA Uncharacterized protein OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.9 0.0 0.058 4.5 13 37 .. 199 223 .. 186 224 .. 0.85 2 ? 9.5 0.0 0.019 1.5 12 38 .] 323 355 .. 280 355 .. 0.86 3 ! 10.6 0.1 0.0083 0.64 13 37 .. 371 397 .. 359 398 .. 0.76 Alignments for each domain: == domain 1 score: 7.9 bits; conditional E-value: 0.058 EEEEEEETTSSEEEEEETTSEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriW 37 ts++f+p+ a +++++ D+++ ++ tr|S4R4K3|S4R4K3_PETMA 199 LTSVQFHPSAAVILTAGLDRSLSLF 223 79************9999**99875 PP == domain 2 score: 9.5 bits; conditional E-value: 0.019 S..EEEEE....EETTSSEEEEEETTSEEEEEE CS WD40 12 s..vtsla....fspdgawlasGsdDgtvriWd 38 s v+++a fs dg+ + + +d g v++Wd tr|S4R4K3|S4R4K3_PETMA 323 SmkVNGQAnaatFSADGKRVYTTTDEGQVYVWD 355 245777778888*********9999*******9 PP == domain 3 score: 10.6 bits; conditional E-value: 0.0083 E..EEEEEETTSSEEEEEETTSEEEEE CS WD40 13 v..tslafspdgawlasGsdDgtvriW 37 v +s+a spdg++la+Gs g v ++ tr|S4R4K3|S4R4K3_PETMA 371 VngSSIAASPDGRYLACGSVSGVVNLY 397 64458999***********99998876 PP >> tr|S4RXK0|S4RXK0_PETMA Uncharacterized protein OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.9 0.0 0.54 42 16 36 .. 59 79 .. 55 80 .. 0.92 2 ! 25.1 0.7 2.2e-07 1.7e-05 1 38 [] 85 124 .. 85 124 .. 0.79 3 ? 3.0 0.0 2.2 1.7e+02 13 38 .] 140 164 .. 126 164 .. 0.83 Alignments for each domain: == domain 1 score: 4.9 bits; conditional E-value: 0.54 EEEETTSSEEEEEETTSEEEE CS WD40 16 lafspdgawlasGsdDgtvri 36 lafspd +++as + +++++i tr|S4RXK0|S4RXK0_PETMA 59 LAFSPDRSLMASTHVNHNIYI 79 68*********9999999987 PP == domain 2 score: 25.1 bits; conditional E-value: 2.2e-07 TEEEEEEESS.SSEEEEEEETTSSE.EEEEETTSEEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgaw.lasGsdDgtvriWd 38 gqc+++l GH +++ f+p+ + lasG+ Dg vriWd tr|S4RXK0|S4RXK0_PETMA 85 GQCTHSLVGHrRTPWCVTFHPSIKGlLASGCLDGEVRIWD 124 79********8445788666665553679999*******9 PP == domain 3 score: 3.0 bits; conditional E-value: 2.2 EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriWd 38 + slaf+p ++l+ ++ + +++Wd tr|S4RXK0|S4RXK0_PETMA 140 IASLAFHPTVQLLVVAT-ANEIHFWD 164 7899********99999.99999998 PP >> tr|S4RT27|S4RT27_PETMA WD repeat domain 35 OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.5 0.0 0.018 1.4 13 36 .. 17 40 .. 8 40 .. 0.90 2 ? 8.4 0.0 0.041 3.1 4 37 .. 65 99 .. 62 100 .. 0.86 3 ? 0.9 0.0 9.8 7.6e+02 13 32 .. 119 147 .. 112 151 .. 0.57 4 ? 8.5 0.0 0.037 2.9 14 38 .] 161 185 .. 141 185 .. 0.83 Alignments for each domain: == domain 1 score: 9.5 bits; conditional E-value: 0.018 EEEEEEETTSSEEEEEETTSEEEE CS WD40 13 vtslafspdgawlasGsdDgtvri 36 +++a++++ ++a+G++Dg ++i tr|S4RT27|S4RT27_PETMA 17 LRCVAWNKELGYIACGGEDGLLKI 40 68******************9998 PP == domain 2 score: 8.4 bits; conditional E-value: 0.041 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 +t +GH + v la++ + + l+s++ +g + +W tr|S4RT27|S4RT27_PETMA 65 NQTMEGHsGAVQVLAWNEHYQKLTSSDQNGLIIVW 99 57889**555*************98888****999 PP == domain 3 score: 0.9 bits; conditional E-value: 9.8 EEEEEEETTSSE.........EEEEETTS CS WD40 13 vtslafspdgaw.........lasGsdDg 32 v+s++++ dg+ ++ Gs Dg tr|S4RT27|S4RT27_PETMA 119 VRSMCWNLDGQKicivyedgaVIVGSVDG 147 77788777777733333333322366665 PP == domain 4 score: 8.5 bits; conditional E-value: 0.037 EEEEEETTSSEEEEEETTSEEEEEE CS WD40 14 tslafspdgawlasGsdDgtvriWd 38 ++ a+spdg+ l+ G+ +g v+i+d tr|S4RT27|S4RT27_PETMA 161 CHAAWSPDGRTLLFGMANGEVHIYD 185 5666*******988*99******98 PP >> tr|S4RXJ9|S4RXJ9_PETMA Uncharacterized protein OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.6 0.0 0.64 49 16 36 .. 59 79 .. 56 80 .. 0.92 2 ! 24.8 0.7 2.6e-07 2e-05 1 38 [] 85 124 .. 85 124 .. 0.79 3 ? 2.7 0.0 2.5 2e+02 13 38 .] 140 164 .. 126 164 .. 0.83 Alignments for each domain: == domain 1 score: 4.6 bits; conditional E-value: 0.64 EEEETTSSEEEEEETTSEEEE CS WD40 16 lafspdgawlasGsdDgtvri 36 lafspd +++as + +++++i tr|S4RXJ9|S4RXJ9_PETMA 59 LAFSPDRSLMASTHVNHNIYI 79 68*********9999999987 PP == domain 2 score: 24.8 bits; conditional E-value: 2.6e-07 TEEEEEEESS.SSEEEEEEETTSSE.EEEEETTSEEEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgaw.lasGsdDgtvriWd 38 gqc+++l GH +++ f+p+ + lasG+ Dg vriWd tr|S4RXJ9|S4RXJ9_PETMA 85 GQCTHSLVGHrRTPWCVTFHPSIKGlLASGCLDGEVRIWD 124 79********8445788666665553679999*******9 PP == domain 3 score: 2.7 bits; conditional E-value: 2.5 EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriWd 38 + slaf+p ++l+ ++ + +++Wd tr|S4RXJ9|S4RXJ9_PETMA 140 IASLAFHPTVQLLVVAT-ANEIHFWD 164 7899********99999.99999998 PP >> tr|S4R4H6|S4R4H6_PETMA Uncharacterized protein OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.0 0.0 8.7 6.7e+02 14 29 .. 86 102 .. 79 108 .. 0.76 2 ! 22.3 0.1 1.7e-06 0.00013 2 37 .. 117 154 .. 116 155 .. 0.88 3 ? 5.8 0.2 0.26 20 9 28 .. 168 187 .. 159 209 .. 0.75 4 ? 3.0 0.0 2.1 1.6e+02 15 37 .. 229 242 .. 210 243 .. 0.69 Alignments for each domain: == domain 1 score: 1.0 bits; conditional E-value: 8.7 EEEEEETTSSEEE.EEE CS WD40 14 tslafspdgawla.sGs 29 t+++f+p + + +G+ tr|S4R4H6|S4R4H6_PETMA 86 TCVDFHPQDSNVYlAGT 102 89999999887633666 PP == domain 2 score: 22.3 bits; conditional E-value: 1.7e-06 EEEEEEESS.SSEEEEEEETTSSEEE.EEETTSEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawla.sGsdDgtvriW 37 q+l+++++H ++v+ + +sp + ++ s+s D +vr+W tr|S4R4H6|S4R4H6_PETMA 117 QHLQSYSAHqGPVYRVLWSPFEPEVFlSCSSDWSVRLW 154 889******888************7448877******* PP == domain 3 score: 5.8 bits; conditional E-value: 0.26 SSSSEEEEEEETTSSEEEEE CS WD40 9 GHssvtslafspdgawlasG 28 G + v ++a+sp+++ l+++ tr|S4R4H6|S4R4H6_PETMA 168 GSQAVLDVAWSPHSPTLLAA 187 335599**********9875 PP == domain 4 score: 3.0 bits; conditional E-value: 2.1 EEEEETTSSEEEEEETTSEEEEE CS WD40 15 slafspdgawlasGsdDgtvriW 37 +l l+ G+ Dg+v ++ tr|S4R4H6|S4R4H6_PETMA 229 CL--------LV-GDSDGHVTLY 242 33........65.966***9776 PP >> tr|S4RHS2|S4RHS2_PETMA Dynein, axonemal, intermediate chain 1, paralog 1 OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.2 0.0 0.85 65 12 38 .] 204 231 .. 195 231 .. 0.73 2 ? 1.5 0.3 6.3 4.9e+02 10 37 .. 251 283 .. 243 284 .. 0.69 3 ! 17.7 0.2 4.8e-05 0.0037 2 37 .. 352 389 .. 351 390 .. 0.85 4 ? 8.2 0.1 0.047 3.7 12 38 .] 406 433 .. 395 433 .. 0.79 5 ? 7.2 0.1 0.095 7.4 9 32 .. 451 473 .. 443 476 .. 0.79 Alignments for each domain: == domain 1 score: 4.2 bits; conditional E-value: 0.85 SEEEEEEETTSSEEE.EEETTSEEEEEE CS WD40 12 svtslafspdgawla.sGsdDgtvriWd 38 +v ++++++ + l+ +G +Dgtv +++ tr|S4RHS2|S4RHS2_PETMA 204 GVMGVDVHDARPHLVaAGLYDGTVAVYN 231 57788877777777615547****9987 PP == domain 2 score: 1.5 bits; conditional E-value: 6.3 S.SSEEEEE.....EETTSSEEEEEETTSEEEEE CS WD40 10 H.ssvtsla.....fspdgawlasGsdDgtvriW 37 H ++v+ ++ + + ++++ +s Dg v W tr|S4RHS2|S4RHS2_PETMA 251 HtDPVWQVKwqrddLDNNLNFFSVSS-DGRVASW 283 75668888655555555666677677.9988666 PP == domain 3 score: 17.7 bits; conditional E-value: 4.8e-05 EEEEEEESSSS..EEEEEEETTSSEE.EEEETTSEEEEE CS WD40 2 qclrtltGHss..vtslafspdgawl.asGsdDgtvriW 37 q l t+++H + v +++++p ++ + as+s D +++iW tr|S4RHS2|S4RHS2_PETMA 352 QFLDTYDAH-HmaVEAVRWNPFHTRVfASCSADWSLKIW 389 567899***.555************7368999******* PP == domain 4 score: 8.2 bits; conditional E-value: 0.047 SEEEEEEETTSSEEEEE.ETTSEEEEEE CS WD40 12 svtslafspdgawlasG.sdDgtvriWd 38 v ++a+ p+++ ++++ + Dg+v+++d tr|S4RHS2|S4RHS2_PETMA 406 AVGDVAWAPYSSTVFAAvTADGKVHVFD 433 4899*********9877667******98 PP == domain 5 score: 7.2 bits; conditional E-value: 0.095 SSSSEEEEEEETTSSEEEEEETTS CS WD40 9 GHssvtslafspdgawlasGsdDg 32 H+ t++af+p+++ l+ G+ D+ tr|S4RHS2|S4RHS2_PETMA 451 KHTKLTHVAFNPSQPVLIVGD-DR 473 57669************9988.87 PP >> tr|S4R6V7|S4R6V7_PETMA WD repeat domain 74 OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.6 0.3 0.66 51 12 35 .. 29 53 .. 14 56 .. 0.71 2 ? 6.4 0.0 0.17 13 16 38 .] 125 139 .. 110 139 .. 0.83 3 ? 5.5 0.0 0.34 27 13 38 .] 166 193 .. 158 193 .. 0.85 4 ! 18.0 0.1 3.8e-05 0.0029 5 37 .. 247 280 .. 243 281 .. 0.88 Alignments for each domain: == domain 1 score: 4.6 bits; conditional E-value: 0.66 SEEEEEEETTSSE..EEEEETTSEEE CS WD40 12 svtslafspdgaw..lasGsdDgtvr 35 +++l++ +d ++ G+++gtv+ tr|S4R6V7|S4R6V7_PETMA 29 EICCLCWGDDDERqvVL-GCRNGTVK 53 399**977766667656.999***99 PP == domain 2 score: 6.4 bits; conditional E-value: 0.17 EEEETTSSEEEEEETTSEEEEEE CS WD40 16 lafspdgawlasGsdDgtvriWd 38 + +a+G++ + ++iWd tr|S4R6V7|S4R6V7_PETMA 125 V--------VATGGRENDLKIWD 139 3........789**********9 PP == domain 3 score: 5.5 bits; conditional E-value: 0.34 EEEEEEETTSSEEEEE..ETTSEEEEEE CS WD40 13 vtslafspdgawlasG..sdDgtvriWd 38 +++l+f p l+++ + g vri+d tr|S4R6V7|S4R6V7_PETMA 166 IRDLQFMPGTEKLVTCtaHHQGQVRIYD 193 78999999999999886567******98 PP == domain 4 score: 18.0 bits; conditional E-value: 3.8e-05 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvriW 37 + l+G+ +svt+++ +p+ +++as++ D+ +ri tr|S4R6V7|S4R6V7_PETMA 247 GALKGQaGSVTCIQCHPSLPLVASCGLDRYLRIH 280 568999888***********************95 PP >> tr|S4RN48|S4RN48_PETMA Uncharacterized protein OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.0 0.0 4.3 3.3e+02 4 38 .] 8 50 .. 5 50 .. 0.74 2 ! 14.2 0.0 0.0006 0.047 5 37 .. 104 139 .. 100 140 .. 0.76 3 ! 13.0 0.0 0.0014 0.11 3 38 .] 146 184 .] 144 184 .] 0.68 Alignments for each domain: == domain 1 score: 2.0 bits; conditional E-value: 4.3 EEEEESS.SSEEEEEEETTSSEEEEEET.......TSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsd.......DgtvriWd 38 lr++++ + v ++ f + g+ ++s++d D+t+ Wd tr|S4RN48|S4RN48_PETMA 8 LREFRAPcQQVLAMLFLRGGDEFISSTDavsrdspDRTLLAWD 50 5666666455778888888888888876677788999999998 PP == domain 2 score: 14.2 bits; conditional E-value: 0.0006 EEEESS..SS..EEEEEEETTSSEEEEEETTSEEEEE CS WD40 5 rtltGH..ss..vtslafspdgawlasGsdDgtvriW 37 + ++GH + v ++ fs+dg++l +Gs Dg+ r++ tr|S4RN48|S4RN48_PETMA 104 KRFEGHtvEGygV-ACEFSRDGSLLGTGSADGSARFY 139 5689994322445.666*******989******9986 PP == domain 3 score: 13.0 bits; conditional E-value: 0.0014 EEEEEESS.SS.EEEEEEETTSSE.EEEEETTSEEEEEE CS WD40 3 clrtltGH.ss.vtslafspdgaw.lasGsdDgtvriWd 38 +l +l +H ++ s f+p + la++++Dg vr+W+ tr|S4RN48|S4RN48_PETMA 146 LLASLAAHaGGpCLSATFHPVLPRtLATAGWDGGVRVWN 184 566777776442344435555555799***********8 PP >> tr|S4RER8|S4RER8_PETMA WD repeat domain 45 OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.4 0.0 1.6 1.2e+02 27 38 .] 65 82 .. 39 82 .. 0.66 2 ? 9.0 0.0 0.027 2.1 6 34 .. 186 215 .. 179 220 .. 0.86 3 ! 14.0 0.1 0.00072 0.056 13 37 .. 239 263 .. 226 263 .. 0.85 Alignments for each domain: == domain 1 score: 3.4 bits; conditional E-value: 1.6 EEE.T.....TSEEEEEE CS WD40 27 sGs.d.....DgtvriWd 38 G+ D++v +Wd tr|S4RER8|S4RER8_PETMA 65 VGGgSspkfaDNSVLVWD 82 3431134455*******9 PP == domain 2 score: 9.0 bits; conditional E-value: 0.027 EEESS.SSEEEEEEETTSSEEEEEETTSEE CS WD40 6 tltGH.ssvtslafspdgawlasGsdDgtv 34 t+ +H + + ++a ++ g+++as+s++gt+ tr|S4RER8|S4RER8_PETMA 186 TINAHqGEIACIALNQPGSLVASASKKGTL 215 45699666*****************98886 PP == domain 3 score: 14.0 bits; conditional E-value: 0.00072 EEEEEEETTSSEEEEEETTSEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriW 37 +++ fs+d+++l+ +sd+gtv+++ tr|S4RER8|S4RER8_PETMA 239 LYCINFSHDSSFLCVSSDKGTVHVF 263 68***********99999****985 PP >> tr|S4RQD8|S4RQD8_PETMA Uncharacterized protein OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 29.8 0.0 7.2e-09 5.6e-07 6 36 .. 13 44 .. 8 45 .. 0.89 Alignments for each domain: == domain 1 score: 29.8 bits; conditional E-value: 7.2e-09 EEESS.SSEEEEEEETTSSEEEEEETTSEEEE CS WD40 6 tltGH.ssvtslafspdgawlasGsdDgtvri 36 +GH ++++s+af+pdg+ +sG++Dg vri tr|S4RQD8|S4RQD8_PETMA 13 RVKGHfGPINSVAFHPDGKSYSSGGEDGYVRI 44 569**888************999********9 PP >> tr|S4RH86|S4RH86_PETMA WD repeat domain 21 OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.6 0.1 0.072 5.6 4 34 .. 247 277 .. 241 279 .. 0.86 2 ? 9.0 0.0 0.026 2 9 38 .] 299 329 .. 292 329 .. 0.87 3 ? 9.2 0.0 0.022 1.7 4 37 .. 336 372 .. 333 373 .. 0.81 Alignments for each domain: == domain 1 score: 7.6 bits; conditional E-value: 0.072 EEEEESSSSEEEEEEETTSSEEEEEETTSEE CS WD40 4 lrtltGHssvtslafspdgawlasGsdDgtv 34 ++t+ +Hs+v +++f +++l +G++ g+v tr|S4RH86|S4RH86_PETMA 247 QQTIHTHSDVLAQCFAEQSPLLYCGCRSGKV 277 567778999**************99987766 PP == domain 2 score: 9.0 bits; conditional E-value: 0.026 SS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 9 GH.ssvtslafspdgawlasGsdDgtvriWd 38 H s + +l++ d ++l+++++ g++++Wd tr|S4RH86|S4RH86_PETMA 299 RHeSAIVALRTLADENYLLASDMAGKIKLWD 329 5977799************9999*******9 PP == domain 3 score: 9.2 bits; conditional E-value: 0.022 EEEEESS.SS..E..EEEEEETTSSEEEEEETTSEEEEE CS WD40 4 lrtltGH.ss..v..tslafspdgawlasGsdDgtvriW 37 + ++ GH + + ++ s+d +++++ + D++ r+W tr|S4RH86|S4RH86_PETMA 336 VLEYHGHrNEhaIlpLHV--SDDENFIVAVGQDNSTRFW 372 667899986668645677..*******99999******* PP >> tr|S4RN20|S4RN20_PETMA Echinoderm microtubule associated protein like 2 OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 12.6 0.8 0.0019 0.15 3 32 .. 257 292 .. 255 303 .. 0.75 2 ? 3.9 0.1 1.1 87 12 38 .] 319 350 .. 307 350 .. 0.66 3 ? 3.5 0.0 1.4 1.1e+02 13 37 .. 367 391 .. 354 392 .. 0.77 4 ? 10.0 0.0 0.013 1 2 37 .. 400 437 .. 399 437 .. 0.88 Alignments for each domain: == domain 1 score: 12.6 bits; conditional E-value: 0.0019 EEEEEESS.SSEEEEEEETTSSEEEEE.....ETTS CS WD40 3 clrtltGH.ssvtslafspdgawlasG.....sdDg 32 ++r++ H ++v +la +pd +a+G ++Dg tr|S4RN20|S4RN20_PETMA 257 NQRHYLEHnDDVKCLAIHPDRITIATGqvvgtGKDG 292 7899999*666*************997544333444 PP == domain 2 score: 3.9 bits; conditional E-value: 1.1 S..EEEEEEETTSSEEEEEET...TSEEEEEE CS WD40 12 s..vtslafspdgawlasGsd...DgtvriWd 38 + +lafs+ + l+++ d + + +Wd tr|S4RN20|S4RN20_PETMA 319 ErgILCLAFSKTNCGLLCAVDdgnEHVLSVWD 350 14599**********99874413366666665 PP == domain 3 score: 3.5 bits; conditional E-value: 1.4 EEEEEEETTSSE.EEEEETTSEEEEE CS WD40 13 vtslafspdgaw.lasGsdDgtvriW 37 v + +f+p + +++++ + +v++W tr|S4RN20|S4RN20_PETMA 367 VFAADFHPMDPRaIVTCG-KSHVHFW 391 6667788888886679**.******* PP == domain 4 score: 10.0 bits; conditional E-value: 0.013 EEEEEEESS.SS..EEEEEEETTSSEEEEEETTSEEEEE CS WD40 2 qclrtltGH.ss..vtslafspdgawlasGsdDgtvriW 37 +++++++ H ++ v ++ f +g+ + +G+ g++ +W tr|S4RN20|S4RN20_PETMA 400 KKQGIFEKHdKPkyVLCVTFAENGDAI-TGDSSGNIFVW 437 57899999*87788************7.7*66******* PP >> tr|S4R8W1|S4R8W1_PETMA Intraflagellar transport 122 OS=Petromyzon marinus OX=7757 GN=IFT122 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.3 0.6 3.5 2.7e+02 10 31 .. 1 22 [. 1 29 [. 0.79 2 ? 9.7 0.0 0.015 1.2 5 36 .. 33 67 .. 30 69 .. 0.75 3 ? 4.5 0.0 0.71 55 8 21 .. 82 94 .. 74 96 .. 0.85 4 ! 10.5 0.0 0.0091 0.7 3 34 .. 161 193 .. 159 196 .. 0.87 Alignments for each domain: == domain 1 score: 2.3 bits; conditional E-value: 3.5 SSS.EEEEEEETTSSEEEEEETT CS WD40 10 Hss.vtslafspdgawlasGsdD 31 H++ + s+a++p ++ las+s tr|S4R8W1|S4R8W1_PETMA 1 HNDvIQSVAYNPVSHQLASCS-S 22 88856*************997.3 PP == domain 2 score: 9.7 bits; conditional E-value: 0.015 EEEESS..SS.EEEEEEETTSSEEEEEETTSEEEE CS WD40 5 rtltGH..ss.vtslafspdgawlasGsdDgtvri 36 ++ H ss +t++++ dg++la G+ +g v i tr|S4R8W1|S4R8W1_PETMA 33 KSVQKHkaSSrITCCSWTNDGQYLALGMFNGVVSI 67 55666864337************986766777765 PP == domain 3 score: 4.5 bits; conditional E-value: 0.71 ESSSSEEEEEEETT CS WD40 8 tGHssvtslafspd 21 GH +v+s+++sp+ tr|S4R8W1|S4R8W1_PETMA 82 GGH-PVWSICWSPS 94 69*.*********7 PP == domain 4 score: 10.5 bits; conditional E-value: 0.0091 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEE CS WD40 3 clrtltGH.ssvtslafspdgawlasGsdDgtv 34 +l+ H +v+s+++ pd+ ++a Gs Dgtv tr|S4R8W1|S4R8W1_PETMA 161 PLGPVGEHpAWVWSCRVKPDSEYVALGSQDGTV 193 56677789888************988******9 PP >> tr|S4RWJ9|S4RWJ9_PETMA Enhancer of mRNA decapping 4 OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.6 0.0 1.1e-05 0.00089 4 37 .. 308 342 .. 305 343 .. 0.87 2 ? 3.6 0.0 1.4 1e+02 2 37 .. 353 401 .. 352 402 .. 0.81 Alignments for each domain: == domain 1 score: 19.6 bits; conditional E-value: 1.1e-05 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 ++t +GH + v+ a spdga la+++ Dg v++W tr|S4RWJ9|S4RWJ9_PETMA 308 ITTVRGHeGAVNTGALSPDGAILATAGQDGLVKFW 342 67899**888*76668******************* PP == domain 2 score: 3.6 bits; conditional E-value: 1.4 EEEEEEESSSS..EEEEEEETTSSE..........EEEEE.TTSEEEEE CS WD40 2 qclrtltGHss..vtslafspdgaw..........lasGs.dDgtvriW 37 +cl++++ H++ v++l f+++ + +++G+ ++ +++W tr|S4RWJ9|S4RWJ9_PETMA 353 SCLHKWEPHNGmpVSCLLFCDNYKRkeggeqywrfVLTGTnQNQELKVW 401 69*******8889****98888888888888888767885368888888 PP >> tr|S4RX94|S4RX94_PETMA Uncharacterized protein OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.4 0.0 0.17 13 7 37 .. 802 831 .. 798 832 .. 0.76 2 ! 17.8 0.0 4.5e-05 0.0035 1 37 [. 836 878 .. 836 879 .. 0.80 Alignments for each domain: == domain 1 score: 6.4 bits; conditional E-value: 0.17 EESS.SSEEEEEEETTSSE....EEEEETTSEEEEE CS WD40 7 ltGH.ssvtslafspdgaw....lasGsdDgtvriW 37 ++GH v+++ + l ++s D+tvr + tr|S4RX94|S4RX94_PETMA 802 FEGHeAAVSGV------QIfegmLYTCSSDKTVRAF 831 889*7778888......554665889988****965 PP == domain 2 score: 17.8 bits; conditional E-value: 4.5e-05 TEEEEEEESS.SSEEEEE.....EETTSSEEEEEETTSEEEEE CS WD40 1 gqclrtltGH.ssvtsla.....fspdgawlasGsdDgtvriW 37 +qclrt+ GH s v++l + +++ l +G D+t+r + tr|S4RX94|S4RX94_PETMA 836 RQCLRTFNGHtSKVNALLvtvagGNASQPRLYTGASDHTIRCY 878 59********76699997766677777777888955*****87 PP >> tr|S4RUC8|S4RUC8_PETMA WD repeat domain 34 OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.4 0.1 3.3 2.6e+02 15 38 .] 195 219 .. 185 219 .. 0.71 2 ? 5.4 0.1 0.36 28 8 37 .. 236 271 .. 229 272 .. 0.79 3 ? 7.4 0.0 0.083 6.4 8 37 .. 362 394 .. 357 395 .. 0.81 4 ? 0.9 0.0 9.6 7.5e+02 8 36 .. 406 436 .. 400 438 .. 0.66 5 ? 4.5 0.0 0.72 56 11 37 .. 457 484 .. 445 485 .. 0.74 Alignments for each domain: == domain 1 score: 2.4 bits; conditional E-value: 3.3 EEEEETTSSE..EEEE..ETTSEEEEEE CS WD40 15 slafspdgaw..lasG..sdDgtvriWd 38 +l s + +w +++G s g v +Wd tr|S4RUC8|S4RUC8_PETMA 195 CL--SFHPTWpaVIAGgaS-SGEVFVWD 219 44..666667776667344.*******9 PP == domain 2 score: 5.4 bits; conditional E-value: 0.36 ESS.SSEEEEEEETTSSE...........EEEEETTSEEEEE CS WD40 8 tGH.ssvtslafspdgaw...........lasGsdDgtvriW 37 t+H ++vt + +w l+s++ Dg v+ W tr|S4RUC8|S4RUC8_PETMA 236 TTHqQPVTQV------QWvhspgqsrvllLMSAGLDGCVMTW 271 579888****......7766666677887678888****988 PP == domain 3 score: 7.4 bits; conditional E-value: 0.083 ESS.SSEEEEEEETTSSE.EE..EEETTSEEEEE CS WD40 8 tGH.ssvtslafspdgaw.la..sGsdDgtvriW 37 H ++v+++ fsp ++ ++ +G+ Dg vr++ tr|S4RUC8|S4RUC8_PETMA 362 VKHqGPVYAVNFSPFNRRgVSvqAGT-DGQVRVF 394 569788************85445688.*****97 PP == domain 4 score: 0.9 bits; conditional E-value: 9.6 ESS.SSEEEEEEETTSSEEEEEE.TTSEEEE CS WD40 8 tGH.ssvtslafspdgawlasGs.dDgtvri 36 ++ s v + a+sp ++++++s g + + tr|S4RUC8|S4RUC8_PETMA 406 RAAtSYVLAAAWSPARPLVLAAStAEGELLL 436 55545588999*******8766524666555 PP == domain 5 score: 4.5 bits; conditional E-value: 0.72 SSEEEEEEETTSSEEE.EEETTSEEEEE CS WD40 11 ssvtslafspdgawla.sGsdDgtvriW 37 s+v++laf+p ++ l+ G g r+W tr|S4RUC8|S4RUC8_PETMA 457 SPVSCLAFNPKQPGLLaVGLQSGAARVW 484 46*********99976156578888888 PP >> tr|S4RUH1|S4RUH1_PETMA Uncharacterized protein OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.1 0.5 1e-07 7.8e-06 9 37 .. 2 31 .. 1 32 [. 0.90 Alignments for each domain: == domain 1 score: 26.1 bits; conditional E-value: 1e-07 SS.SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 9 GH.ssvtslafspdgawlasGsdDgtvriW 37 GH + v+s+a+sp+g+ ++s+ D+++r+W tr|S4RUH1|S4RUH1_PETMA 2 GHhGEVWSVAVSPSGDHILSAAHDKSLRLW 31 89777************998866******* PP >> tr|S4RP31|S4RP31_PETMA Uncharacterized protein OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.3 0.0 0.088 6.8 13 37 .. 4 28 .. 1 29 [. 0.85 2 ? 9.7 0.0 0.016 1.2 24 38 .] 80 98 .. 46 98 .. 0.68 3 ? 6.4 0.1 0.17 14 9 37 .. 150 178 .. 142 179 .. 0.70 Alignments for each domain: == domain 1 score: 7.3 bits; conditional E-value: 0.088 EEEEEEETTSSEEEEEETTSEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriW 37 ++ + f++ g++la+G++ g v i+ tr|S4RP31|S4RP31_PETMA 4 ISTVEFNHTGDLLATGDKGGRVVIF 28 68899***********998888875 PP == domain 2 score: 9.7 bits; conditional E-value: 0.016 E...EEEE.ETTSEEEEEE CS WD40 24 w...lasG.sdDgtvriWd 38 l+s + D+t+++W+ tr|S4RP31|S4RP31_PETMA 80 AaqfLLSTnGADKTIKLWK 98 34446664466*******6 PP == domain 3 score: 6.4 bits; conditional E-value: 0.17 SS.SSEEEEE.EETTSSEEEEEETTSEEEEE CS WD40 9 GH.ssvtsla.fspdgawlasGsdDgtvriW 37 +H +++s++ +s++ ++ +s++ D + +W tr|S4RP31|S4RP31_PETMA 150 AHtYHINSISvNSDNETY-MSAD-DLRINLW 178 67445*****55555555.5777.*999999 PP >> tr|S4RY26|S4RY26_PETMA WD repeat-containing protein 76 OS=Petromyzon marinus OX=7757 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.0 0.2 0.055 4.3 13 38 .] 162 189 .. 138 189 .. 0.85 2 ! 15.2 0.1 0.00029 0.023 3 35 .. 197 231 .. 195 234 .. 0.88 Alignments for each domain: == domain 1 score: 8.0 bits; conditional E-value: 0.055 EEEEEEETTSSEE..EEEETTSEEEEEE CS WD40 13 vtslafspdgawl..asGsdDgtvriWd 38 ++s+a++p + + a+G+ g+v +Wd tr|S4RY26|S4RY26_PETMA 162 ICSVAVHPTMDHVlmAAGDSQGNVVFWD 189 89999999999963368855*******9 PP == domain 2 score: 15.2 bits; conditional E-value: 0.00029 EEEEEESS.SSEEEEEEETTSSEEE.EEETTSEEE CS WD40 3 clrtltGH.ssvtslafspdgawla.sGsdDgtvr 35 cl++++ H + v++l+f+p ++ ++ s+s D ++r tr|S4RY26|S4RY26_PETMA 197 CLYVFKPHvDRVSCLCFPPTQPTHLySSSFDDSLR 231 99******888************655998899988 PP >> tr|S4RZL7|S4RZL7_PETMA Ddb1 and cul4 associated factor 7 OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.2 0.1 3.7 2.9e+02 13 37 .. 77 102 .. 62 102 .. 0.73 2 ! 10.6 0.0 0.0082 0.63 6 38 .] 123 159 .. 115 159 .. 0.79 3 ! 15.3 1.0 0.00027 0.021 4 38 .] 213 249 .. 210 249 .. 0.84 Alignments for each domain: == domain 1 score: 2.2 bits; conditional E-value: 3.7 EEEEEEETTSSEEE.EEETTSEEEEE CS WD40 13 vtslafspdgawla.sGsdDgtvriW 37 ts++++ + l+ ++s D t+ iW tr|S4RZL7|S4RZL7_PETMA 77 LTSFDWNEVDPNLLgTSSIDTTCTIW 102 5777655555557756789******9 PP == domain 2 score: 10.6 bits; conditional E-value: 0.0082 EEESS.SSEEEEEEETTSSE...EEEEETTSEEEEEE CS WD40 6 tltGH.ssvtslafspdgaw...lasGsdDgtvriWd 38 l +H + v+++afs+ g +as + Dg+vr++d tr|S4RZL7|S4RZL7_PETMA 123 QLIAHdKEVYDIAFSRAGGGrdmFASVGADGSVRMFD 159 36799888****88877777997666566*****998 PP == domain 3 score: 15.3 bits; conditional E-value: 0.00027 EEEEESS.SSEEEEEEETTSSEEE.EEETTSEEEEEE CS WD40 4 lrtltGH.ssvtslafspdgawla.sGsdDgtvriWd 38 + l H +v+++a+ p+++ ++ ++ dD+ iWd tr|S4RZL7|S4RZL7_PETMA 213 VARLNNHrACVNGIAWAPHSSCHIcTAADDHQALIWD 249 5667789888************7636689*******9 PP >> tr|S4RD53|S4RD53_PETMA Uncharacterized protein OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.4 0.0 0.17 13 6 37 .. 81 114 .. 77 115 .. 0.78 2 ! 15.9 0.0 0.00017 0.013 12 37 .. 132 158 .. 120 158 .. 0.84 Alignments for each domain: == domain 1 score: 6.4 bits; conditional E-value: 0.17 EEESS.SSEEEEEEETTSSEEEEEE.TTSEEEEE CS WD40 6 tltGH.ssvtslafspdgawlasGs.dDgtvriW 37 t ++H s+ ++a ++ + +a++s + +ri+ tr|S4RD53|S4RD53_PETMA 81 TVKAHeSGLACIALDSTASRVATAShKGTLIRIY 114 5789*999*************9886256666665 PP == domain 2 score: 15.9 bits; conditional E-value: 0.00017 S.EEEEEEETTSSEEEEEETTSEEEEE CS WD40 12 s.vtslafspdgawlasGsdDgtvriW 37 +++ fs+d ++l+++sd+gtv+i+ tr|S4RD53|S4RD53_PETMA 132 AqLYCINFSQDASFLCASSDKGTVHIF 158 2579************99******995 PP >> tr|S4RP34|S4RP34_PETMA Uncharacterized protein OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.6 0.0 0.15 11 13 37 .. 3 27 .. 1 28 [. 0.86 2 ? 9.2 0.0 0.023 1.8 24 38 .] 92 110 .. 58 110 .. 0.68 3 ? 5.9 0.1 0.25 20 9 37 .. 204 232 .. 196 233 .. 0.70 Alignments for each domain: == domain 1 score: 6.6 bits; conditional E-value: 0.15 EEEEEEETTSSEEEEEETTSEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriW 37 ++ + f++ g++la+G++ g v i+ tr|S4RP34|S4RP34_PETMA 3 ISTVEFNHTGDLLATGDKGGRVVIF 27 57899***********988888875 PP == domain 2 score: 9.2 bits; conditional E-value: 0.023 E...EEEE.ETTSEEEEEE CS WD40 24 w...lasG.sdDgtvriWd 38 l+s + D+t+++W+ tr|S4RP34|S4RP34_PETMA 92 AaqfLLSTnGADKTIKLWK 110 34446664466*******6 PP == domain 3 score: 5.9 bits; conditional E-value: 0.25 SS.SSEEEEE.EETTSSEEEEEETTSEEEEE CS WD40 9 GH.ssvtsla.fspdgawlasGsdDgtvriW 37 +H +++s++ +s++ ++ +s++ D + +W tr|S4RP34|S4RP34_PETMA 204 AHtYHINSISvNSDNETY-MSAD-DLRINLW 232 67445*****55555555.5777.*999999 PP >> tr|S4R5N2|S4R5N2_PETMA WD repeat domain 46 OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.0 0.0 8.7 6.7e+02 6 29 .. 272 295 .. 267 300 .. 0.76 2 ! 20.2 0.0 7.9e-06 0.00061 5 38 .] 354 388 .. 350 388 .. 0.88 Alignments for each domain: == domain 1 score: 1.0 bits; conditional E-value: 8.7 EEE.SSSSEEEEEEETTSSEEEEEE CS WD40 6 tlt.GHssvtslafspdgawlasGs 29 l+ H ++t + f p++ +la++s tr|S4R5N2|S4R5N2_PETMA 272 CLKrFH-NITRMEFLPYHFLLATAS 295 443267.7**********9999876 PP == domain 2 score: 20.2 bits; conditional E-value: 7.9e-06 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 5 rtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 + H + v+s+a+ + g+++a+++ D+++r+Wd tr|S4R5N2|S4R5N2_PETMA 354 VKMICHrGAVRSVAVERTGTYMATSGLDHKLRVWD 388 556689888**************9999*******9 PP >> tr|S4RNL0|S4RNL0_PETMA Uncharacterized protein OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.5 0.2 0.00011 0.0088 3 36 .. 88 120 .. 86 122 .. 0.83 2 ? 4.5 0.3 0.72 56 14 32 .. 147 165 .. 137 170 .. 0.89 3 ? 6.0 0.4 0.24 19 2 27 .. 319 345 .. 318 349 .] 0.78 Alignments for each domain: == domain 1 score: 16.5 bits; conditional E-value: 0.00011 EEEEEESSSSEEEEEEETTSSEEEEEETTSEEEE CS WD40 3 clrtltGHssvtslafspdgawlasGsdDgtvri 36 l+++ H++v+s++fspdg+ ++ ++D+ ++ tr|S4RNL0|S4RNL0_PETMA 88 VLHHFHFHKPVHSIKFSPDGRKFV-VTKDKVAML 120 69*******************987.466877666 PP == domain 2 score: 4.5 bits; conditional E-value: 0.72 EEEEEETTSSEEEEEETTS CS WD40 14 tslafspdgawlasGsdDg 32 t++++ +d++ ++ Gs+D tr|S4RNL0|S4RNL0_PETMA 147 TCIDWTDDSRCFSVGSKDM 165 8***********99**996 PP == domain 3 score: 6.0 bits; conditional E-value: 0.24 EEEEEEESS.SSEEEEEEETTSSEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlas 27 +++++l+ +s++s++ + g+w+a tr|S4RNL0|S4RNL0_PETMA 319 NLIHSLSISdQSISSVCINNTGDWIAF 345 567888766568************984 PP >> tr|S4R495|S4R495_PETMA Uncharacterized protein OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.0 0.1 4.3 3.3e+02 9 36 .. 37 67 .. 25 69 .. 0.64 2 ! 12.5 0.4 0.0021 0.16 8 38 .] 122 152 .. 115 152 .. 0.84 3 ? 6.5 0.0 0.16 13 13 38 .] 170 195 .. 162 195 .. 0.85 4 ? 6.8 0.1 0.14 11 20 37 .. 223 240 .. 217 240 .. 0.92 Alignments for each domain: == domain 1 score: 2.0 bits; conditional E-value: 4.3 SSSS.EEEEE..EETTSSEEEEEETTSEEEE CS WD40 9 GHss.vtsla..fspdgawlasGsdDgtvri 36 Hs v+ l f++ g +++G+ g+v++ tr|S4R495|S4R495_PETMA 37 SHSRtVRFLHaaFDSTGEAFVAGDHQGHVYL 67 4444664333448888988999977999976 PP == domain 2 score: 12.5 bits; conditional E-value: 0.0021 ESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 8 tGH.ssvtslafspdgawlasGsdDgtvriWd 38 +GH s v++++++ +g++ ++ s t +Wd tr|S4R495|S4R495_PETMA 122 RGHnSAVSCISVHASGRLALTTS-GDTAQLWD 152 8**666************98888.88888887 PP == domain 3 score: 6.5 bits; conditional E-value: 0.16 EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriWd 38 v + f p ++ ++s+ +Dg+v Wd tr|S4R495|S4R495_PETMA 170 VQKVFFLPMSNTIVSCFKDGSVFGWD 195 666779999*************9998 PP == domain 4 score: 6.8 bits; conditional E-value: 0.14 TTSSEEEEEETTSEEEEE CS WD40 20 pdgawlasGsdDgtvriW 37 +dg+ la+G++ g v++W tr|S4R495|S4R495_PETMA 223 RDGRTLACGGRSGCVHVW 240 7999************** PP >> tr|S4R902|S4R902_PETMA Uncharacterized protein OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 10.6 0.2 0.0084 0.65 13 38 .] 23 50 .. 3 50 .. 0.79 2 ! 18.2 0.2 3.4e-05 0.0026 5 38 .] 73 108 .. 70 108 .. 0.82 Alignments for each domain: == domain 1 score: 10.6 bits; conditional E-value: 0.0084 EEEEEEETTSSE..EEEEETTSEEEEEE CS WD40 13 vtslafspdgaw..lasGsdDgtvriWd 38 +la+sp ++ la G +Dg+v +Wd tr|S4R902|S4R902_PETMA 23 CFCLAWSPLQSHshLAVGFYDGSVGLWD 50 45887888888898999*99*******9 PP == domain 2 score: 18.2 bits; conditional E-value: 3.4e-05 EEEESS.SSEEEEEEETTSSE.EEEEETTSEEEEEE CS WD40 5 rtltGH.ssvtslafspdgaw.lasGsdDgtvriWd 38 t+++H + v sla++p ++ l+++s D+ +++Wd tr|S4R902|S4R902_PETMA 73 NTFSAHdNLVKSLAWCPMNKNfLVTASHDRWIKFWD 108 589***555****988877774678888*******9 PP >> tr|S4R9Z7|S4R9Z7_PETMA Uncharacterized protein OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.6 0.0 2.9e-06 0.00022 2 37 .. 474 510 .. 473 511 .. 0.81 Alignments for each domain: == domain 1 score: 21.6 bits; conditional E-value: 2.9e-06 EEEEEEESS.SSEEEEEEETTSSEEEE.EETTSEEEEE CS WD40 2 qclrtltGH.ssvtslafspdgawlas.GsdDgtvriW 37 +c+ + GH +++t+laf pdg++la+ +s D+ + +W tr|S4R9Z7|S4R9Z7_PETMA 474 KCQMI-QGHkGPITALAFAPDGRYLATySSTDNRLAFW 510 67777.7**777*************964345*999999 PP >> tr|S4RY24|S4RY24_PETMA WD repeat-containing protein 76 OS=Petromyzon marinus OX=7757 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.1 0.1 0.051 4 13 38 .] 163 190 .. 142 190 .. 0.84 2 ! 10.8 0.1 0.007 0.55 7 35 .. 204 234 .. 200 237 .. 0.83 Alignments for each domain: == domain 1 score: 8.1 bits; conditional E-value: 0.051 EEEEEEETTSSEE..EEEETTSEEEEEE CS WD40 13 vtslafspdgawl..asGsdDgtvriWd 38 ++s+a++p + + a+G+ g+v +Wd tr|S4RY24|S4RY24_PETMA 163 ICSVAVHPTMDHVlmAAGDSQGNVVFWD 190 89999999999963368855*******9 PP == domain 2 score: 10.8 bits; conditional E-value: 0.007 EESS.SSEEEEEEETTSSEEE.EEETTSEEE CS WD40 7 ltGH.ssvtslafspdgawla.sGsdDgtvr 35 ++ H + v++l+f+p ++ ++ s+s D ++r tr|S4RY24|S4RY24_PETMA 204 FRPHvDRVSCLCFPPTQPTHLySSSFDDSLR 234 6779788************655998899988 PP >> tr|S4RA27|S4RA27_PETMA Dynein, cytoplasmic 1, intermediate chain 2a OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.8 0.0 0.57 44 7 38 .] 290 324 .. 284 324 .. 0.76 2 ? 2.1 0.1 4 3.1e+02 9 37 .. 342 373 .. 334 374 .. 0.65 3 ! 13.6 0.6 0.00095 0.073 6 37 .. 434 472 .. 431 473 .. 0.79 4 ? 1.7 0.0 5.3 4.1e+02 2 32 .. 478 508 .. 477 516 .. 0.81 Alignments for each domain: == domain 1 score: 4.8 bits; conditional E-value: 0.57 EESS..SSEEEEEEETTSSEEEEEE.TTSEEEEEE CS WD40 7 ltGH..ssvtslafspdgawlasGs.dDgtvriWd 38 + H s v s +f + ++ l+ G+ + g + +Wd tr|S4RA27|S4RA27_PETMA 290 YVFHcqSAVMSASFARFHPNLVVGGtYSGQIVLWD 324 455763449999988888889888538*******9 PP == domain 2 score: 2.1 bits; conditional E-value: 4 SS.SSEEEEE..EETTSSEEEEEETTSEEEEE CS WD40 9 GH.ssvtsla..fspdgawlasGsdDgtvriW 37 +H +v+++ ++ + l+s s Dg W tr|S4RA27|S4RA27_PETMA 342 AHtHPVYCVNvvGTQNAHNLISVSTDGRMCSW 373 56336999977744444445666669988777 PP == domain 3 score: 13.6 bits; conditional E-value: 0.00095 EEESS.SSEEEEE.......EETTSSEEEEEETTSEEEEE CS WD40 6 tltGH.ssvtsla.......fspdgawlasGsdDgtvriW 37 +++GH ++vt++ + ++ +l+ +s D t+++W tr|S4RA27|S4RA27_PETMA 434 VFEGHqGPVTGIHshsaagpIDFSHLFLT-SSFDWTIKLW 472 699**888999988778887777777776.555******* PP == domain 4 score: 1.7 bits; conditional E-value: 5.3 EEEEEEESSSS.EEEEEEETTSSEEEEEETTS CS WD40 2 qclrtltGHss.vtslafspdgawlasGsdDg 32 ++l++++ s+ v+++ +sp ++ l++ s Dg tr|S4RA27|S4RA27_PETMA 478 KPLYSFEDNSDyVYDVMWSPVHPSLFA-SVDG 508 688999989556********9999995.5587 PP >> tr|S4RJI4|S4RJI4_PETMA Dynein, axonemal, intermediate chain 2b OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.6 0.2 2.8 2.2e+02 9 36 .. 21 52 .. 12 54 .. 0.56 2 ! 11.7 0.1 0.0037 0.29 2 38 .] 116 153 .. 115 153 .. 0.82 3 ? 7.6 0.0 0.071 5.5 13 33 .. 216 236 .. 201 239 .. 0.80 Alignments for each domain: == domain 1 score: 2.6 bits; conditional E-value: 2.8 SS.SSEEEEEEETTSSE........EEEEETTS.EEEE CS WD40 9 GH.ssvtslafspdgaw........lasGsdDg.tvri 36 H ++v+ + w ++s+s Dg +v tr|S4RJI4|S4RJI4_PETMA 21 SHrDPVYKVI------WqqsktgteFFSCSTDGqHVLW 52 4666677673......3333333557788755504444 PP == domain 2 score: 11.7 bits; conditional E-value: 0.0037 EEEEEEESS.SSEEEEE..EETTSSEEEEEETTSEEEEEE CS WD40 2 qclrtltGH.ssvtsla..fspdgawlasGsdDgtvriWd 38 + ++t++GH ++v++l+ +++l+ G D t riW+ tr|S4RJI4|S4RJI4_PETMA 116 KIVGTYSGHhGPVYALQrhPFFPKNFLTIG--DWTARIWS 153 6789*****999****99855556777775..*******5 PP == domain 3 score: 7.6 bits; conditional E-value: 0.071 EEEEEEETTSSEEEEEETTSE CS WD40 13 vtslafspdgawlasGsdDgt 33 +sl+ +++g++la+Gs +gt tr|S4RJI4|S4RJI4_PETMA 216 LHSLRIQDNGRFLACGSQNGT 236 78999************9998 PP >> tr|S4R7S7|S4R7S7_PETMA Uncharacterized protein OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 10.9 0.0 0.0067 0.52 16 38 .] 4 26 .. 1 26 [. 0.90 2 ? 6.6 0.0 0.15 12 12 38 .] 62 88 .. 52 88 .. 0.85 Alignments for each domain: == domain 1 score: 10.9 bits; conditional E-value: 0.0067 EEEETTSSEEEEEETTSEEEEEE CS WD40 16 lafspdgawlasGsdDgtvriWd 38 + f pdg+ +a ++ Dg++ +Wd tr|S4R7S7|S4R7S7_PETMA 4 VVFRPDGKQIAVATLDGHISFWD 26 6699*******9999*******9 PP == domain 2 score: 6.6 bits; conditional E-value: 0.15 SEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 12 svtslafspdgawlasGsdDgtvriWd 38 s t l++s dg +++G++ + v i++ tr|S4R7S7|S4R7S7_PETMA 62 SFTTLCYSADGESILAGGRSKFVCIYN 88 4689*****************999997 PP >> tr|S4RGA6|S4RGA6_PETMA Uncharacterized protein OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.5 0.1 6.4e-06 0.00049 6 37 .. 114 148 .. 108 149 .. 0.81 Alignments for each domain: == domain 1 score: 20.5 bits; conditional E-value: 6.4e-06 EEE.SS.SSEEEEEEETTSSE.EEEEETTSEEEEE CS WD40 6 tlt.GH.ssvtslafspdgaw.lasGsdDgtvriW 37 +l+ GH v++la++ d + l++G++Dg + +W tr|S4RGA6|S4RGA6_PETMA 114 SLRgGHrATVRCLAWDGDDRGsLVTGGEDGQLVLW 148 4545**888****88777777889*********** PP >> tr|S4RRN0|S4RRN0_PETMA Uncharacterized protein OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.1 0.3 0.22 17 7 34 .. 15 43 .. 9 44 .. 0.78 2 ? 3.4 0.0 1.5 1.2e+02 4 34 .. 57 86 .. 54 88 .. 0.75 3 ? 5.0 0.0 0.48 37 13 29 .. 156 172 .. 148 185 .. 0.75 Alignments for each domain: == domain 1 score: 6.1 bits; conditional E-value: 0.22 EESS.SSEEEEEEETTSSEEEEEETTSEE CS WD40 7 ltGH.ssvtslafspdgawlasGsdDgtv 34 + G s v sl +++g+ ++sG+ Dgt+ tr|S4RRN0|S4RRN0_PETMA 15 IYGAdSYVVSLTANSSGKGILSGHADGTI 43 446645588999999999999*******9 PP == domain 2 score: 3.4 bits; conditional E-value: 1.5 EEEEESS.SSEEEEEEETTSSEEEEEETTSEE CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDgtv 34 ++++ +H ++ ++la+ +g++ a G+ D+ v tr|S4RRN0|S4RRN0_PETMA 57 QGKIVTHsCPPYALAWGASGPL-A-GGCDRRV 86 566668966689**99999999.5.6559987 PP == domain 3 score: 5.0 bits; conditional E-value: 0.48 EEEEEEETTSSEEEEEE CS WD40 13 vtslafspdgawlasGs 29 vt+la+ +dg+ l++G+ tr|S4RRN0|S4RRN0_PETMA 156 VTALAWKKDGSRLCAGT 172 9************9885 PP >> tr|S4RUJ1|S4RUJ1_PETMA Uncharacterized protein OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.5 0.1 5.4e-05 0.0042 9 34 .. 78 105 .] 67 105 .] 0.79 Alignments for each domain: == domain 1 score: 17.5 bits; conditional E-value: 5.4e-05 SSSS.EEEEEEETTSSEEE.EEETTSEE CS WD40 9 GHss.vtslafspdgawla.sGsdDgtv 34 GH+ v ++++sp +++++ s+sdD tv tr|S4RUJ1|S4RUJ1_PETMA 78 GHQAiVLDIKWSPFNDFIIaSASDDATV 105 9*5548***********86266999886 PP >> tr|S4RFD4|S4RFD4_PETMA Uncharacterized protein OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.7 0.0 0.15 11 14 37 .. 12 35 .. 2 35 .. 0.86 2 ? 9.3 0.0 0.021 1.6 12 37 .. 48 76 .. 40 77 .. 0.80 Alignments for each domain: == domain 1 score: 6.7 bits; conditional E-value: 0.15 EEEEEETTSSEEEEEETTSEEEEE CS WD40 14 tslafspdgawlasGsdDgtvriW 37 ++la++pd +++a G++ g v+i+ tr|S4RFD4|S4RFD4_PETMA 12 SALAYDPDLRLMAIGTKSGAVKIY 35 6899******************97 PP == domain 2 score: 9.3 bits; conditional E-value: 0.021 S...EEEEEEETTSSEEEEEETTSEEEEE CS WD40 12 s...vtslafspdgawlasGsdDgtvriW 37 + vt l f p +a ++s dDg++++W tr|S4RFD4|S4RFD4_PETMA 48 DiaiVTQLHFLPGQARVVSLLDDGSLHLW 76 235479999*******985468******* PP >> tr|S4RD17|S4RD17_PETMA Nucleolar protein 10 OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.2 0.0 0.2 15 14 38 .] 57 82 .. 49 82 .. 0.84 2 ? 0.9 0.0 10 7.7e+02 9 38 .] 177 205 .. 167 205 .. 0.75 3 ? 5.7 0.0 0.29 23 10 38 .] 270 300 .. 263 300 .. 0.85 Alignments for each domain: == domain 1 score: 6.2 bits; conditional E-value: 0.2 EEEEEETTSSEE.EEEETTSEEEEEE CS WD40 14 tslafspdgawl.asGsdDgtvriWd 38 + +++s+dg++l a+G++++ vr +d tr|S4RD17|S4RD17_PETMA 57 NNIRVSRDGQYLlATGTYKPRVRCYD 82 56789******7369999*****998 PP == domain 2 score: 0.9 bits; conditional E-value: 10 SS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 9 GH.ssvtslafspdgawlasGsdDgtvriWd 38 G ++v+++ + +++++a+G+ g Wd tr|S4RD17|S4RD17_PETMA 177 GSsNNVCGI--NTEHQLFACGTAEGRAECWD 205 554558888..88889999998899999998 PP == domain 3 score: 5.7 bits; conditional E-value: 0.29 S.SS..EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 10 H.ss..vtslafspdgawlasGsdDgtvriWd 38 H ++ ++ + f +d +++++++ + v++W+ tr|S4RD17|S4RD17_PETMA 270 HrFGlpIRNIEFRDDLDLVVTAD-SRIVKMWN 300 75556699999999******988.*******8 PP >> tr|S4RD29|S4RD29_PETMA LLGL1, scribble cell polarity complex component OS=Petromyzon marinus OX=7757 GN=LLGL1 PE=4 S # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.0 0.1 0.00034 0.026 23 38 .] 65 80 .. 12 80 .. 0.85 Alignments for each domain: == domain 1 score: 15.0 bits; conditional E-value: 0.00034 SEEEEEETTSEEEEEE CS WD40 23 awlasGsdDgtvriWd 38 ++l++G++Dgtvr+Wd tr|S4RD29|S4RD29_PETMA 65 NLLLTGHEDGTVRFWD 80 4589***********9 PP >> tr|S4RD28|S4RD28_PETMA LLGL1, scribble cell polarity complex component OS=Petromyzon marinus OX=7757 GN=LLGL1 PE=4 S # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.3 0.0 0.00056 0.044 23 38 .] 149 164 .. 121 164 .. 0.88 Alignments for each domain: == domain 1 score: 14.3 bits; conditional E-value: 0.00056 SEEEEEETTSEEEEEE CS WD40 23 awlasGsdDgtvriWd 38 ++l++G++Dgtvr+Wd tr|S4RD28|S4RD28_PETMA 149 NLLLTGHEDGTVRFWD 164 5689***********9 PP >> tr|S4RET4|S4RET4_PETMA WD repeat domain 54 OS=Petromyzon marinus OX=7757 GN=WDR54 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.6 0.0 5.9 4.6e+02 8 38 .] 192 228 .. 186 228 .. 0.63 2 ? 2.5 0.0 3 2.3e+02 13 38 .] 246 269 .. 233 269 .. 0.64 3 ! 10.4 0.0 0.0097 0.75 9 38 .] 281 311 .. 277 311 .. 0.85 Alignments for each domain: == domain 1 score: 1.6 bits; conditional E-value: 5.9 ESS.SSEEEEE..EETTSSE...EEEEETTSEEEEEE CS WD40 8 tGH.ssvtsla..fspdgaw...lasGsdDgtvriWd 38 H +ts+a s ++ l++++d g + +W+ tr|S4RET4|S4RET4_PETMA 192 GQHtEAITSIAaeCSMRKDCvpdLVTADDSGVLCVWK 228 5675558888655333333345567899999999995 PP == domain 2 score: 2.5 bits; conditional E-value: 3 EEEEEEETTSSE....EEEEETTSEEEEEE CS WD40 13 vtslafspdgaw....lasGsdDgtvriWd 38 ts+ a+ +a+G g +r++d tr|S4RET4|S4RET4_PETMA 246 CTSV------ALwdgiVAAGYGSGQIRVYD 269 5566......334665788955******98 PP == domain 3 score: 10.4 bits; conditional E-value: 0.0097 SS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 9 GH.ssvtslafspdgawlasGsdDgtvriWd 38 +H +++ l++ p++ l+sG +D vr+W+ tr|S4RET4|S4RET4_PETMA 281 AHaRWINVLDVAPESGRLLSGAEDSFVRVWK 311 5755588888899999999***********6 PP >> tr|S4RNU8|S4RNU8_PETMA Uncharacterized protein OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.2 0.4 1.8 1.4e+02 31 37 .. 1 7 [. 1 7 [. 0.98 2 ? 10.7 0.0 0.0078 0.6 4 32 .. 63 92 .] 60 92 .] 0.87 Alignments for each domain: == domain 1 score: 3.2 bits; conditional E-value: 1.8 TSEEEEE CS WD40 31 DgtvriW 37 D+t+r+W tr|S4RNU8|S4RNU8_PETMA 1 DRTIRVW 7 9****** PP == domain 2 score: 10.7 bits; conditional E-value: 0.0078 EEEEESS.SSEEEEEEETTSSEEEEEETTS CS WD40 4 lrtltGH.ssvtslafspdgawlasGsdDg 32 +rt+ +H + vt++ f ++ w++s + D+ tr|S4RNU8|S4RNU8_PETMA 63 TRTYAAHqQRVTGVHFVLESEWVLSTGQDK 92 799****777************99888775 PP >> tr|S4RIT6|S4RIT6_PETMA Vacuolar protein sorting-associated protein 41 homolog OS=Petromyzon marinus OX=7757 PE=3 SV= # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.3 0.0 0.0011 0.088 1 36 [. 72 108 .. 72 109 .. 0.90 Alignments for each domain: == domain 1 score: 13.3 bits; conditional E-value: 0.0011 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEE CS WD40 1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvri 36 g+++r+++ H v+ ++ + dg ++as+sd g+v i tr|S4RIT6|S4RIT6_PETMA 72 GNKIREFSSHtVTVNQISLDMDGEYIASCSDEGKVFI 108 67899*****7779****************9999876 PP >> tr|S4RZK2|S4RZK2_PETMA Uncharacterized protein OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.1 0.4 0.22 17 17 37 .. 102 127 .. 85 128 .. 0.79 2 ? 7.3 0.0 0.095 7.3 13 38 .] 325 350 .. 316 350 .. 0.87 Alignments for each domain: == domain 1 score: 6.1 bits; conditional E-value: 0.22 E.....EETTSSEEEEEETTSEEEEE CS WD40 17 a.....fspdgawlasGsdDgtvriW 37 + +s++g+ l+s+++Dg v W tr|S4RZK2|S4RZK2_PETMA 102 DiallqWSSNGTRLISADRDGLVICW 127 233445*****************999 PP == domain 2 score: 7.3 bits; conditional E-value: 0.095 EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 13 vtslafspdgawlasGsdDgtvriWd 38 +++++++p++ +la G+ +g + +W+ tr|S4RZK2|S4RZK2_PETMA 325 INCVSYCPSKGMLAGGTNKGRISMWK 350 9************97778*******6 PP >> tr|S4RE65|S4RE65_PETMA Lysosomal trafficking regulator OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.8 0.6 0.014 1.1 3 38 .] 3582 3617 .. 3580 3617 .. 0.64 2 ? 3.4 0.2 1.6 1.2e+02 4 37 .. 3624 3662 .. 3621 3663 .. 0.67 3 ? 3.8 0.0 1.2 90 7 38 .] 3668 3708 .. 3662 3708 .. 0.77 Alignments for each domain: == domain 1 score: 9.8 bits; conditional E-value: 0.014 EEEEEESS.SS.....EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 3 clrtltGH.ss.....vtslafspdgawlasGsdDgtvriWd 38 c++ + GH + v ++ + l+s+s Dgt+ iWd tr|S4RE65|S4RE65_PETMA 3582 CVHLY-GHtDAvallhV-----CKPYSVLVSASIDGTCIIWD 3617 66666.99544443332.....222233899**********9 PP == domain 2 score: 3.4 bits; conditional E-value: 1.6 EEEEESS.SSEEEEE.EETTSSEEEEEET...TSEEEEE CS WD40 4 lrtltGH.ssvtsla.fspdgawlasGsd...DgtvriW 37 +++ltGH s+v +++ g+ +++s +r+W tr|S4RE65|S4RE65_PETMA 3624 VQSLTGHkSPVMAVSaSETTGDIATACSSvggGSDLRLW 3662 789****888**997666666665444311227777777 PP == domain 3 score: 3.8 bits; conditional E-value: 1.2 EESS..SS..EEEEE..EETTSSE..EEEEE.TTSEEEEEE CS WD40 7 ltGH..ss..vtsla..fspdgaw..lasGs.dDgtvriWd 38 l GH s+ v+sla ++p+g+ +++G+ + g vr+W+ tr|S4RE65|S4RE65_PETMA 3668 LIGHvhSPemVRSLAfsNQPEGTSvnVIAGGlETGVVRLWS 3708 779975669***999777777777665788768*******5 PP >> tr|S4RG58|S4RG58_PETMA Uncharacterized protein OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.7 0.1 0.0018 0.14 11 38 .] 19 45 .. 10 45 .. 0.88 Alignments for each domain: == domain 1 score: 12.7 bits; conditional E-value: 0.0018 SSEEEEEEETTSSEEEEEETTSEEEEEE CS WD40 11 ssvtslafspdgawlasGsdDgtvriWd 38 ss+++++fs++g+++++ d tv++Wd tr|S4RG58|S4RG58_PETMA 19 SSISDVKFSHSGRYMMT-RDYLTVKVWD 45 46999***********6.99*******9 PP >> tr|S4R606|S4R606_PETMA Uncharacterized protein OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 0.1 0.00099 0.076 12 37 .. 152 184 .. 139 184 .. 0.76 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 0.00099 S........EEEEEEETTSSEEEEEETTSEEEEE CS WD40 12 s........vtslafspdgawlasGsdDgtvriW 37 + ++l+++p ++ a+Gs D+++ +W tr|S4R606|S4R606_PETMA 152 PaleskvpaLSGLSWHPQLPLCACGS-DRSLCFW 184 44444544457899*********99*.******* PP >> tr|S4RMY9|S4RMY9_PETMA Uncharacterized protein OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.6 0.0 0.076 5.9 6 37 .. 78 112 .. 72 112 .. 0.78 2 ? 2.9 0.1 2.3 1.8e+02 13 35 .. 131 153 .. 122 156 .. 0.82 3 ? 2.4 0.3 3.2 2.5e+02 10 34 .. 173 195 .. 153 197 .. 0.60 Alignments for each domain: == domain 1 score: 7.6 bits; conditional E-value: 0.076 EEESSSS....EEEEEEETTSSEEEEEETTSEEEEE CS WD40 6 tltGHss....vtslafspdgawlasGsdDgtvriW 37 l+GH+s + + + p++++ a+++ Dg + +W tr|S4RMY9|S4RMY9_PETMA 78 NLRGHNSeelkILVVWNEPYQKL-ATCDADGGIFVW 112 58999666888877766666666.89*99******* PP == domain 2 score: 2.9 bits; conditional E-value: 2.3 EEEEEEETTSSEEEEEETTSEEE CS WD40 13 vtslafspdgawlasGsdDgtvr 35 v+++ +s+dg+ + + +Dg v tr|S4RMY9|S4RMY9_PETMA 131 VSDFTWSHDGTQALISYRDGFVL 153 89999*******87789999875 PP == domain 3 score: 2.4 bits; conditional E-value: 3.2 SSSE.EEEEEETTSSEEEEEETTSEE CS WD40 10 Hssv.tslafspdgawlasGsdDgtv 34 H + +++ + pd + ++ G+ Dg v tr|S4RMY9|S4RMY9_PETMA 173 H--IlCGV-WTPDDQQVLFGTSDGQV 195 3..43555.66666665548559987 PP >> tr|S4RL41|S4RL41_PETMA Eukaryotic translation initiation factor 3 subunit B OS=Petromyzon marinus OX=7757 GN=EIF3B P # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.2 0.0 7.9 6.1e+02 16 37 .. 222 242 .. 208 242 .. 0.81 2 ? 2.9 0.0 2.3 1.8e+02 14 30 .. 495 514 .. 464 529 .. 0.71 3 ? 3.1 0.0 2 1.6e+02 14 29 .. 538 554 .. 528 563 .. 0.80 Alignments for each domain: == domain 1 score: 1.2 bits; conditional E-value: 7.9 EEEETTSSEEEEEETTSEEEEE CS WD40 16 lafspdgawlasGsdDgtvriW 37 +++sp g++la+ + + + +W tr|S4RL41|S4RL41_PETMA 222 VRWSPKGTYLATFH-QRGIALW 242 67********9744.6655555 PP == domain 2 score: 2.9 bits; conditional E-value: 2.3 EEEEEETTSSEEE.EE..ET CS WD40 14 tslafspdgawla.sG..sd 30 +s+ +sp g++++ +G s+ tr|S4RL41|S4RL41_PETMA 495 NSIYWSPQGQFVVlAGlrSM 514 5677*******754764443 PP == domain 3 score: 3.1 bits; conditional E-value: 2 EEEEEETTSSEEEEE.E CS WD40 14 tslafspdgawlasG.s 29 +++ ++p+g++++++ s tr|S4RL41|S4RL41_PETMA 538 SDVEWDPSGRYIITSvS 554 5788*******998755 PP >> tr|S4RMX0|S4RMX0_PETMA Uncharacterized protein OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.7 0.3 0.14 11 10 27 .. 22 42 .. 13 64 .. 0.82 2 ? 6.4 0.1 0.18 14 17 36 .. 73 93 .. 47 97 .. 0.80 3 ? 1.1 0.2 8.3 6.4e+02 18 35 .. 118 148 .. 95 149 .. 0.63 Alignments for each domain: == domain 1 score: 6.7 bits; conditional E-value: 0.14 SSS...EEEEEEETTSSEEEE CS WD40 10 Hss...vtslafspdgawlas 27 Hs+ v+++ ++pd+++l++ tr|S4RMX0|S4RMX0_PETMA 22 HSCldcVSHIEWCPDSRFLLC 42 53334488888*******996 PP == domain 2 score: 6.4 bits; conditional E-value: 0.18 E..EETTSSEEEEEETTSEEEE CS WD40 17 a..fspdgawlasGsdDgtvri 36 a +spdg+ ++ s D +ri tr|S4RMX0|S4RMX0_PETMA 73 AsrWSPDGRHILNTS-DFQLRI 93 155*********889.999998 PP == domain 3 score: 1.1 bits; conditional E-value: 8.3 EETTSSE..............EEEEETTSEEE CS WD40 18 fspdgaw..............lasGsdDgtvr 35 f +dg++ ++s+s D +r tr|S4RMX0|S4RMX0_PETMA 118 FTRDGRFmalaerrdgtdcvsIFSCS-DWQLR 148 66666665544444444444455677.76665 PP >> tr|S4RCS6|S4RCS6_PETMA Uncharacterized protein OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.4 0.4 6.8 5.3e+02 15 38 .] 59 83 .. 36 83 .. 0.81 2 ? 1.9 0.0 4.8 3.7e+02 7 34 .. 135 162 .. 129 164 .. 0.83 3 ? 6.7 0.1 0.14 11 8 38 .] 270 302 .. 265 302 .. 0.79 Alignments for each domain: == domain 1 score: 1.4 bits; conditional E-value: 6.8 EEEEETTSSEEE.EEETTSEEEEEE CS WD40 15 slafspdgawla.sGsdDgtvriWd 38 ++++++dg+ la + + ++++Wd tr|S4RCS6|S4RCS6_PETMA 59 GFDWDKDGDTLAlIAEKSSSIYLWD 83 677*******966789999*****8 PP == domain 2 score: 1.9 bits; conditional E-value: 4.8 EESS.SSEEEEEEETTSSEEEEEETTSEE CS WD40 7 ltGH.ssvtslafspdgawlasGsdDgtv 34 l H + +t+ ++s + + Gs+D+++ tr|S4RCS6|S4RCS6_PETMA 135 LGKHtKRITCGCWSAQDLLAL-GSEDKSI 162 6679888*9999999999988.*****98 PP == domain 3 score: 6.7 bits; conditional E-value: 0.14 ESSSS...EEEEEEETTSSEEEEEETTSEEEEEE CS WD40 8 tGHss...vtslafspdgawlasGsdDgtvriWd 38 +H++ ts+a s++ as++ D+ ++i d tr|S4RCS6|S4RCS6_PETMA 270 QAHNHkdsLTSIAISQSLGKAASCG-DNCIKIHD 302 56633336****9999999999***.*****976 PP >> tr|S4RTK9|S4RTK9_PETMA Tripartite motif containing 2b OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.4 0.1 0.36 28 14 32 .. 65 82 .. 10 95 .. 0.81 2 ? 1.6 0.1 5.6 4.4e+02 17 38 .] 157 178 .. 152 191 .. 0.72 Alignments for each domain: == domain 1 score: 5.4 bits; conditional E-value: 0.36 EEEEEETTSSEEEEEETTS CS WD40 14 tslafspdgawlasGsdDg 32 t++a++p+g+ +++ ++D+ tr|S4RTK9|S4RTK9_PETMA 65 TGVAVHPNGDVIVA-DYDN 82 8999*******985.4343 PP == domain 2 score: 1.6 bits; conditional E-value: 5.6 EEETTSSEEEEEETTSEEEEEE CS WD40 17 afspdgawlasGsdDgtvriWd 38 a++++++ +++ +++v++++ tr|S4RTK9|S4RTK9_PETMA 157 AVNSNNDIIVTDFHNHSVKVFN 178 5566777777664577777765 PP >> tr|S4RYX9|S4RYX9_PETMA Uncharacterized protein OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.3 0.2 3.5 2.7e+02 5 29 .. 104 130 .. 100 136 .. 0.77 2 ? 3.8 0.1 1.2 93 11 37 .. 195 221 .. 186 222 .. 0.81 Alignments for each domain: == domain 1 score: 2.3 bits; conditional E-value: 3.5 EEEESS..SSEEEEEEETTSSEEEEEE CS WD40 5 rtltGH..ssvtslafspdgawlasGs 29 ++t H ++t++ +++ +++l+ G+ tr|S4RYX9|S4RYX9_PETMA 104 FSFTSHypHGITAVVYQHTHRLLLVGG 130 5788897445*****999999998885 PP == domain 2 score: 3.8 bits; conditional E-value: 1.2 SSEEEEEEETTSSEEEEEETTSEEEEE CS WD40 11 ssvtslafspdgawlasGsdDgtvriW 37 ++++ l+ spd + la+ + g++ +W tr|S4RYX9|S4RYX9_PETMA 195 DGIYKLSLSPDASVLAAVHFSGKLSLW 221 3599999********99999****999 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (38 nodes) Target sequences: 13539 (5048892 residues searched) Passed MSV filter: 524 (0.038703); expected 270.8 (0.02) Passed bias filter: 457 (0.0337543); expected 270.8 (0.02) Passed Vit filter: 223 (0.0164709); expected 13.5 (0.001) Passed Fwd filter: 176 (0.0129995); expected 0.1 (1e-05) Initial search space (Z): 13539 [actual number of targets] Domain search space (domZ): 175 [number of targets reported over threshold] # CPU time: 0.17u 0.00s 00:00:00.17 Elapsed: 00:00:00.06 # Mc/sec: 3197.63 // [ok]