# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/WD40.hmm.txt
# target sequence database: proteomes/Pseudomonas_aeruginosa.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: WD40 [M=38]
Accession: PF00400.32
Description: WD domain, G-beta repeat
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
0.0068 15.6 0.4 27 4.2 0.0 4.6 5 tr|Q9I609|Q9I609_PSEAE Probable c-type cytochrome OS=Pseudom
0.0073 15.5 0.1 0.37 10.1 0.1 3.5 4 tr|Q9HWH7|Q9HWH7_PSEAE Periplasmic gluconolactonase, PpgL OS
Domain annotation for each sequence (and alignments):
>> tr|Q9I609|Q9I609_PSEAE Probable c-type cytochrome OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 4.2 0.0 0.0098 27 18 38 .] 170 190 .. 137 190 .. 0.78
2 ? 1.7 0.0 0.062 1.7e+02 16 28 .. 209 221 .. 204 224 .. 0.86
3 ? 2.6 0.0 0.031 86 15 29 .. 300 313 .. 280 318 .. 0.84
4 ? -2.0 0.0 0.9 2.5e+03 16 26 .. 346 356 .. 341 359 .. 0.79
5 ? -0.4 0.0 0.28 7.9e+02 15 38 .] 435 460 .. 420 460 .. 0.68
Alignments for each domain:
== domain 1 score: 4.2 bits; conditional E-value: 0.0098
EETTSSEEEEEETTSEEEEEE CS
WD40 18 fspdgawlasGsdDgtvriWd 38
fspdg+++ +s+Dg v ++d
tr|Q9I609|Q9I609_PSEAE 170 FSPDGRLVYFASRDGWVTLYD 190
9******976788*9998887 PP
== domain 2 score: 1.7 bits; conditional E-value: 0.062
EEEETTSSEEEEE CS
WD40 16 lafspdgawlasG 28
la+s+dg+w++ G
tr|Q9I609|Q9I609_PSEAE 209 LAVSDDGRWVLVG 221
789******9877 PP
== domain 3 score: 2.6 bits; conditional E-value: 0.031
EEEEETTSSEEEEEE CS
WD40 15 slafspdgawlasGs 29
+++fspd ++l+ Gs
tr|Q9I609|Q9I609_PSEAE 300 DFSFSPDYRYLL-GS 313
467********9.76 PP
== domain 4 score: -2.0 bits; conditional E-value: 0.9
EEEETTSSEEE CS
WD40 16 lafspdgawla 26
+ + +dg+w++
tr|Q9I609|Q9I609_PSEAE 346 IYWKRDGRWVF 356
66899****86 PP
== domain 5 score: -0.4 bits; conditional E-value: 0.28
EEEEETTSSE.EEEE.ETTSEEEEEE CS
WD40 15 slafspdgaw.lasG.sdDgtvriWd 38
++ f +dg++ l+s ++Dg + ++d
tr|Q9I609|Q9I609_PSEAE 435 HVEFTRDGRYaLLSVwDRDGALVVYD 460
56677888885455566677777766 PP
>> tr|Q9HWH7|Q9HWH7_PSEAE Periplasmic gluconolactonase, PpgL OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 /
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.4 0.0 1.2 3.3e+03 15 26 .. 126 135 .. 112 142 .. 0.62
2 ! 10.1 0.1 0.00013 0.37 6 27 .. 176 195 .. 171 204 .. 0.79
3 ? -3.6 0.0 2 5.6e+03 15 24 .. 235 244 .. 233 252 .. 0.79
4 ? -0.0 0.0 0.21 6e+02 16 28 .. 336 348 .. 325 356 .. 0.81
Alignments for each domain:
== domain 1 score: -2.4 bits; conditional E-value: 1.2
EEEEETTSSEEE CS
WD40 15 slafspdgawla 26
sl s+dg++l+
tr|Q9HWH7|Q9HWH7_PSEAE 126 SL--SHDGRYLF 135
34..77888775 PP
== domain 2 score: 10.1 bits; conditional E-value: 0.00013
EEESSSSEEEEEEETTSSEEEE CS
WD40 6 tltGHssvtslafspdgawlas 27
+GH v+s+ spdg++l++
tr|Q9HWH7|Q9HWH7_PSEAE 176 QVSGH--VHSVVSSPDGQYLFA 195
568**..************986 PP
== domain 3 score: -3.6 bits; conditional E-value: 2
EEEEETTSSE CS
WD40 15 slafspdgaw 24
+l fs dg++
tr|Q9HWH7|Q9HWH7_PSEAE 235 HLIFSADGRF 244
5678999987 PP
== domain 4 score: -0.0 bits; conditional E-value: 0.21
EEEETTSSEEEEE CS
WD40 16 lafspdgawlasG 28
+afsp g++++ +
tr|Q9HWH7|Q9HWH7_PSEAE 336 FAFSPGGRFVLVA 348
68*******8755 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (38 nodes)
Target sequences: 5563 (1857172 residues searched)
Passed MSV filter: 126 (0.0226496); expected 111.3 (0.02)
Passed bias filter: 112 (0.020133); expected 111.3 (0.02)
Passed Vit filter: 9 (0.00161783); expected 5.6 (0.001)
Passed Fwd filter: 2 (0.000359518); expected 0.1 (1e-05)
Initial search space (Z): 5563 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02
# Mc/sec: 3528.63
//
[ok]