# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/zf-GRF.hmm.txt
# target sequence database: proteomes/Drosophila_melanogaster.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: zf-GRF [M=45]
Accession: PF06839.12
Description: GRF zinc finger
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.6e-38 130.2 18.6 4.6e-21 74.3 2.1 3.0 3 sp|Q9NG98|TOP3A_DROME DNA topoisomerase 3-alpha OS=Drosophi
------ inclusion threshold ------
0.04 13.6 0.2 0.098 12.4 0.2 1.7 1 tr|A8DY89|A8DY89_DROME Uncharacterized protein OS=Drosophila
Domain annotation for each sequence (and alignments):
>> sp|Q9NG98|TOP3A_DROME DNA topoisomerase 3-alpha OS=Drosophila melanogaster OX=7227 GN=Top3alpha PE=2 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -4.2 0.4 2 1.4e+04 26 33 .. 656 663 .. 656 664 .. 0.79
2 ! 66.3 2.8 2.1e-22 1.4e-18 1 44 [. 1033 1075 .. 1033 1076 .. 0.97
3 ! 74.3 2.1 6.6e-25 4.6e-21 1 44 [. 1150 1192 .. 1150 1193 .. 0.95
Alignments for each domain:
== domain 1 score: -4.2 bits; conditional E-value: 2
zf-GRF 26 YkCpkgke 33
++Cpk++e
sp|Q9NG98|TOP3A_DROME 656 FQCPKCNE 663
68999986 PP
== domain 2 score: 66.3 bits; conditional E-value: 2.1e-22
zf-GRF 1 plCk.cgrlavlltvrktgpNkGRkFYkCpkgkekqCgFFkWade 44
+lC+ c+++a+++tvrk+gpN GR +YkCpk++e C+FF+Wade
sp|Q9NG98|TOP3A_DROME 1033 VLCTgCQQPARQNTVRKNGPNLGRLYYKCPKPDE--CNFFQWADE 1075
68*******************************9..********8 PP
== domain 3 score: 74.3 bits; conditional E-value: 6.6e-25
zf-GRF 1 plCkcgrlavlltvrktgpNkGRkFYkCpkgkekqCgFFkWade 44
++C+cg+la++ltvrk+gpN+GR FY+Cp++++ +CgFFkW de
sp|Q9NG98|TOP3A_DROME 1150 VMCNCGQLASQLTVRKDGPNQGRPFYACPTREK-SCGFFKWGDE 1192
69*****************************95.9********8 PP
>> tr|A8DY89|A8DY89_DROME Uncharacterized protein OS=Drosophila melanogaster OX=7227 GN=CG34220 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.4 0.2 1.4e-05 0.098 5 43 .. 668 706 .. 665 708 .. 0.82
Alignments for each domain:
== domain 1 score: 12.4 bits; conditional E-value: 1.4e-05
zf-GRF 5 cgrlavlltvrktgpNkGRkFYkCpkgke..kqCgFFkWad 43
c ++a +v + pN+ R +Y C +g+ ++C W d
tr|A8DY89|A8DY89_DROME 668 CAGRADGSIV--QDPNHCRRYYECRAGRRllRKCRAGLWYD 706
7788888999..59*************99887786666655 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (45 nodes)
Target sequences: 13786 (7394964 residues searched)
Passed MSV filter: 629 (0.045626); expected 275.7 (0.02)
Passed bias filter: 290 (0.0210358); expected 275.7 (0.02)
Passed Vit filter: 21 (0.00152328); expected 13.8 (0.001)
Passed Fwd filter: 2 (0.000145075); expected 0.1 (1e-05)
Initial search space (Z): 13786 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.07u 0.00s 00:00:00.07 Elapsed: 00:00:00.05
# Mc/sec: 6655.47
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