# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/zf-GRF.hmm.txt # target sequence database: proteomes/Homo_sapiens.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: zf-GRF [M=45] Accession: PF06839.12 Description: GRF zinc finger Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.4e-36 126.6 20.1 4.7e-19 70.4 4.0 3.4 3 tr|B4DSJ0|B4DSJ0_HUMAN DNA topoisomerase 3-alpha OS=Homo sa 8.9e-36 124.0 11.5 8.2e-19 69.7 4.1 4.1 4 sp|Q8TAT5|NEIL3_HUMAN Endonuclease 8-like 3 OS=Homo sapien 1.1e-35 123.7 20.8 9.2e-19 69.5 4.0 3.4 3 tr|B4DK80|B4DK80_HUMAN DNA topoisomerase OS=Homo sapiens GN 1.4e-35 123.3 20.8 1e-18 69.4 4.0 3.3 3 sp|Q13472-2|TOP3A_HUMAN Isoform Short of DNA topoisomerase 3 1.5e-35 123.2 20.8 1e-18 69.3 4.0 3.3 3 sp|Q13472|TOP3A_HUMAN DNA topoisomerase 3-alpha OS=Homo sa 8.3e-17 63.2 8.2 8.3e-17 63.2 8.2 2.5 2 sp|A8K979-2|ERI2_HUMAN Isoform 2 of ERI1 exoribonuclease 2 1e-16 63.0 8.2 1e-16 63.0 8.2 2.4 2 sp|A8K979|ERI2_HUMAN ERI1 exoribonuclease 2 OS=Homo sapie 1.7e-15 59.0 2.2 4.2e-15 57.8 2.2 1.7 1 sp|Q9H5U6-2|ZCHC4_HUMAN Isoform 2 of Zinc finger CCHC domain 1.3e-14 56.2 2.2 1.3e-14 56.2 2.2 2.9 1 sp|Q9H5U6-3|ZCHC4_HUMAN Isoform 3 of Zinc finger CCHC domain 1.4e-14 56.2 2.2 1.4e-14 56.2 2.2 2.9 1 sp|Q9H5U6|ZCHC4_HUMAN Zinc finger CCHC domain-containing p 2.7e-13 52.0 0.3 5.4e-13 51.0 0.3 1.5 1 tr|I3L0G6|I3L0G6_HUMAN Uncharacterized protein C4orf21 (Fra 7.6e-13 50.6 0.3 2e-12 49.2 0.3 1.8 1 sp|Q86YA3|CD021_HUMAN Uncharacterized protein C4orf21 OS=H 1.9e-12 49.3 0.5 6e-12 47.7 0.5 1.9 1 sp|Q9UBZ4|APEX2_HUMAN DNA-(apurinic or apyrimidinic site) 1e-05 27.7 2.7 1e-05 27.7 2.7 2.4 2 sp|Q9UNY4-2|TTF2_HUMAN Isoform 2 of Transcription terminati 2.6e-05 26.4 3.1 2.6e-05 26.4 3.1 2.4 2 sp|Q9UNY4|TTF2_HUMAN Transcription termination factor 2 O Domain annotation for each sequence (and alignments): >> tr|B4DSJ0|B4DSJ0_HUMAN DNA topoisomerase 3-alpha OS=Homo sapiens GN=TOP3A PE=2 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.3 0.2 0.98 5.8e+03 3 16 .. 188 202 .. 186 206 .. 0.75 2 ! 64.4 3.3 6.2e-21 3.7e-17 1 44 [. 341 381 .. 341 382 .. 0.96 3 ! 70.4 4.0 8e-23 4.7e-19 2 45 .] 426 469 .. 425 469 .. 0.97 Alignments for each domain: == domain 1 score: -0.3 bits; conditional E-value: 0.98 zf-GRF 3 Ck.cgrlavlltvrk 16 C+ c + vl+t ++ tr|B4DSJ0|B4DSJ0_HUMAN 188 CPqCNKDMVLKTKKN 202 888888888888864 PP == domain 2 score: 64.4 bits; conditional E-value: 6.2e-21 zf-GRF 1 plCkcgrlavlltvrktgpNkGRkFYkCpkgkekqCgFFkWade 44 ++C+cg++avlltvrk+gpN+GR+F+kC+ g+ C+FF Wad+ tr|B4DSJ0|B4DSJ0_HUMAN 341 VTCNCGQEAVLLTVRKEGPNRGRQFFKCNGGS---CNFFLWADS 381 58****************************99...********7 PP == domain 3 score: 70.4 bits; conditional E-value: 8e-23 zf-GRF 2 lCkcgrlavlltvrktgpNkGRkFYkCpkgkekqCgFFkWadek 45 +C c +++v++tv+k+gpNkGR+F++C+k++e+qCgFF+W+de+ tr|B4DSJ0|B4DSJ0_HUMAN 426 SCLCSQPSVTRTVQKDGPNKGRQFHTCAKPREQQCGFFQWVDEN 469 7*****************************************96 PP >> sp|Q8TAT5|NEIL3_HUMAN Endonuclease 8-like 3 OS=Homo sapiens GN=NEIL3 PE=1 SV=3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.4 0.1 9.2 5.4e+04 25 30 .. 232 237 .. 231 238 .. 0.80 2 ? -1.3 7.0 2 1.2e+04 4 33 .. 253 281 .. 251 285 .. 0.75 3 ! 67.3 0.8 7.4e-22 4.4e-18 2 44 .. 506 549 .. 505 550 .. 0.93 4 ! 69.7 4.1 1.4e-22 8.2e-19 1 44 [. 552 595 .. 552 596 .. 0.97 Alignments for each domain: == domain 1 score: -3.4 bits; conditional E-value: 9.2 zf-GRF 25 FYkCpk 30 FY+C k sp|Q8TAT5|NEIL3_HUMAN 232 FYRCRK 237 9***65 PP == domain 2 score: -1.3 bits; conditional E-value: 2 zf-GRF 4 kcg.rlavlltvrktgpNkGRkFYkCpkgke 33 +cg +++ + r g N+ R Y Cp +++ sp|Q8TAT5|NEIL3_HUMAN 253 NCGqCHCRITVCR-FGDNN-RMTYFCPHCQK 281 6994456666665.99997.88888**9986 PP == domain 3 score: 67.3 bits; conditional E-value: 7.4e-22 zf-GRF 2 lCk.cgrlavlltvrktgpNkGRkFYkCpkgkekqCgFFkWade 44 C + rl+ l++v k+g+NkGR+FY+Cp+++e+qCgFF+Wad sp|Q8TAT5|NEIL3_HUMAN 506 RCSkHNRLCILRVVGKDGENKGRQFYACPLPREAQCGFFEWADL 549 688688************************************95 PP == domain 4 score: 69.7 bits; conditional E-value: 1.4e-22 zf-GRF 1 plCkcgrlavlltvrktgpNkGRkFYkCpkgkekqCgFFkWade 44 p+C++g++++++tv k gpN+G++F++Cp+gkekqC+FF+Wa++ sp|Q8TAT5|NEIL3_HUMAN 552 PFCNHGKRSTMKTVLKIGPNNGKNFFVCPLGKEKQCNFFQWAEN 595 68***************************************986 PP >> tr|B4DK80|B4DK80_HUMAN DNA topoisomerase OS=Homo sapiens GN=TOP3A PE=2 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.3 0.3 2 1.2e+04 3 16 .. 563 577 .. 561 580 .. 0.75 2 ! 63.5 3.3 1.2e-20 7.1e-17 1 44 [. 716 756 .. 716 757 .. 0.96 3 ! 69.5 4.0 1.6e-22 9.2e-19 2 45 .] 801 844 .. 800 844 .. 0.97 Alignments for each domain: == domain 1 score: -1.3 bits; conditional E-value: 2 zf-GRF 3 Ck.cgrlavlltvrk 16 C+ c + vl+t ++ tr|B4DK80|B4DK80_HUMAN 563 CPqCNKDMVLKTKKN 577 888889999988864 PP == domain 2 score: 63.5 bits; conditional E-value: 1.2e-20 zf-GRF 1 plCkcgrlavlltvrktgpNkGRkFYkCpkgkekqCgFFkWade 44 ++C+cg++avlltvrk+gpN+GR+F+kC+ g+ C+FF Wad+ tr|B4DK80|B4DK80_HUMAN 716 VTCNCGQEAVLLTVRKEGPNRGRQFFKCNGGS---CNFFLWADS 756 58****************************99...********7 PP == domain 3 score: 69.5 bits; conditional E-value: 1.6e-22 zf-GRF 2 lCkcgrlavlltvrktgpNkGRkFYkCpkgkekqCgFFkWadek 45 +C c +++v++tv+k+gpNkGR+F++C+k++e+qCgFF+W+de+ tr|B4DK80|B4DK80_HUMAN 801 SCLCSQPSVTRTVQKDGPNKGRQFHTCAKPREQQCGFFQWVDEN 844 7*****************************************96 PP >> sp|Q13472-2|TOP3A_HUMAN Isoform Short of DNA topoisomerase 3-alpha OS=Homo sapiens GN=TOP3A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.4 0.3 2.2 1.3e+04 3 16 .. 633 647 .. 631 650 .. 0.75 2 ! 63.3 3.3 1.3e-20 7.7e-17 1 44 [. 786 826 .. 786 827 .. 0.96 3 ! 69.4 4.0 1.7e-22 1e-18 2 45 .] 871 914 .. 870 914 .. 0.97 Alignments for each domain: == domain 1 score: -1.4 bits; conditional E-value: 2.2 zf-GRF 3 Ck.cgrlavlltvrk 16 C+ c + vl+t ++ sp|Q13472-2|TOP3A_HUMAN 633 CPqCNKDMVLKTKKN 647 888889999988864 PP == domain 2 score: 63.3 bits; conditional E-value: 1.3e-20 zf-GRF 1 plCkcgrlavlltvrktgpNkGRkFYkCpkgkekqCgFFkWade 44 ++C+cg++avlltvrk+gpN+GR+F+kC+ g+ C+FF Wad+ sp|Q13472-2|TOP3A_HUMAN 786 VTCNCGQEAVLLTVRKEGPNRGRQFFKCNGGS---CNFFLWADS 826 58****************************99...********7 PP == domain 3 score: 69.4 bits; conditional E-value: 1.7e-22 zf-GRF 2 lCkcgrlavlltvrktgpNkGRkFYkCpkgkekqCgFFkWadek 45 +C c +++v++tv+k+gpNkGR+F++C+k++e+qCgFF+W+de+ sp|Q13472-2|TOP3A_HUMAN 871 SCLCSQPSVTRTVQKDGPNKGRQFHTCAKPREQQCGFFQWVDEN 914 7*****************************************96 PP >> sp|Q13472|TOP3A_HUMAN DNA topoisomerase 3-alpha OS=Homo sapiens GN=TOP3A PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.4 0.3 2.2 1.3e+04 3 16 .. 658 672 .. 656 675 .. 0.75 2 ! 63.3 3.3 1.4e-20 8e-17 1 44 [. 811 851 .. 811 852 .. 0.96 3 ! 69.3 4.0 1.7e-22 1e-18 2 45 .] 896 939 .. 895 939 .. 0.97 Alignments for each domain: == domain 1 score: -1.4 bits; conditional E-value: 2.2 zf-GRF 3 Ck.cgrlavlltvrk 16 C+ c + vl+t ++ sp|Q13472|TOP3A_HUMAN 658 CPqCNKDMVLKTKKN 672 888889999988864 PP == domain 2 score: 63.3 bits; conditional E-value: 1.4e-20 zf-GRF 1 plCkcgrlavlltvrktgpNkGRkFYkCpkgkekqCgFFkWade 44 ++C+cg++avlltvrk+gpN+GR+F+kC+ g+ C+FF Wad+ sp|Q13472|TOP3A_HUMAN 811 VTCNCGQEAVLLTVRKEGPNRGRQFFKCNGGS---CNFFLWADS 851 58****************************99...********7 PP == domain 3 score: 69.3 bits; conditional E-value: 1.7e-22 zf-GRF 2 lCkcgrlavlltvrktgpNkGRkFYkCpkgkekqCgFFkWadek 45 +C c +++v++tv+k+gpNkGR+F++C+k++e+qCgFF+W+de+ sp|Q13472|TOP3A_HUMAN 896 SCLCSQPSVTRTVQKDGPNKGRQFHTCAKPREQQCGFFQWVDEN 939 7*****************************************96 PP >> sp|A8K979-2|ERI2_HUMAN Isoform 2 of ERI1 exoribonuclease 2 OS=Homo sapiens GN=ERI2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.1 0.1 0.85 5e+03 32 43 .. 49 61 .. 46 63 .. 0.77 2 ! 63.2 8.2 1.4e-20 8.3e-17 1 44 [. 502 549 .. 502 550 .. 0.97 Alignments for each domain: == domain 1 score: -0.1 bits; conditional E-value: 0.85 zf-GRF 32 ke.kqCgFFkWad 43 +e k C F W d sp|A8K979-2|ERI2_HUMAN 49 SEvKLCAFVTWSD 61 44588******98 PP == domain 2 score: 63.2 bits; conditional E-value: 1.4e-20 zf-GRF 1 plCkcgrlavlltvrktgpNkGRkFYkCpkgke....kqCgFFkWade 44 plCkcgr++++l+v+++gpN+G+ FY+Cp gk+ k+Cg+FkW+++ sp|A8K979-2|ERI2_HUMAN 502 PLCKCGRRSKRLVVSNNGPNHGKVFYCCPIGKYqenrKCCGYFKWEQT 549 79******************************999***********96 PP >> sp|A8K979|ERI2_HUMAN ERI1 exoribonuclease 2 OS=Homo sapiens GN=ERI2 PE=2 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.3 0.1 1 5.9e+03 32 43 .. 142 154 .. 139 156 .. 0.77 2 ! 63.0 8.2 1.7e-20 1e-16 1 44 [. 595 642 .. 595 643 .. 0.97 Alignments for each domain: == domain 1 score: -0.3 bits; conditional E-value: 1 zf-GRF 32 ke.kqCgFFkWad 43 +e k C F W d sp|A8K979|ERI2_HUMAN 142 SEvKLCAFVTWSD 154 44588******98 PP == domain 2 score: 63.0 bits; conditional E-value: 1.7e-20 zf-GRF 1 plCkcgrlavlltvrktgpNkGRkFYkCpkgke....kqCgFFkWade 44 plCkcgr++++l+v+++gpN+G+ FY+Cp gk+ k+Cg+FkW+++ sp|A8K979|ERI2_HUMAN 595 PLCKCGRRSKRLVVSNNGPNHGKVFYCCPIGKYqenrKCCGYFKWEQT 642 79******************************999***********96 PP >> sp|Q9H5U6-2|ZCHC4_HUMAN Isoform 2 of Zinc finger CCHC domain-containing protein 4 OS=Homo sapiens GN=ZCCHC4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 57.8 2.2 7.1e-19 4.2e-15 1 45 [] 38 82 .. 38 82 .. 0.96 Alignments for each domain: == domain 1 score: 57.8 bits; conditional E-value: 7.1e-19 zf-GRF 1 plCkcg.rlavlltvrktgpNkGRkFYkCpkgke.kqCgFFkWadek 45 plC++g +l+++++ +g++++R FY+C+++++ k+C+FF+W+dek sp|Q9H5U6-2|ZCHC4_HUMAN 38 PLCPHGpTLLFVKVT--QGKEETRRFYACSACRDrKDCNFFQWEDEK 82 79*************..6***************************96 PP >> sp|Q9H5U6-3|ZCHC4_HUMAN Isoform 3 of Zinc finger CCHC domain-containing protein 4 OS=Homo sapiens GN=ZCCHC4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.2 2.2 2.3e-18 1.3e-14 1 45 [] 38 82 .. 38 82 .. 0.96 Alignments for each domain: == domain 1 score: 56.2 bits; conditional E-value: 2.3e-18 zf-GRF 1 plCkcg.rlavlltvrktgpNkGRkFYkCpkgke.kqCgFFkWadek 45 plC++g +l+++++ +g++++R FY+C+++++ k+C+FF+W+dek sp|Q9H5U6-3|ZCHC4_HUMAN 38 PLCPHGpTLLFVKVT--QGKEETRRFYACSACRDrKDCNFFQWEDEK 82 79*************..6***************************95 PP >> sp|Q9H5U6|ZCHC4_HUMAN Zinc finger CCHC domain-containing protein 4 OS=Homo sapiens GN=ZCCHC4 PE=1 SV=3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.2 2.2 2.3e-18 1.4e-14 1 45 [] 38 82 .. 38 82 .. 0.96 Alignments for each domain: == domain 1 score: 56.2 bits; conditional E-value: 2.3e-18 zf-GRF 1 plCkcg.rlavlltvrktgpNkGRkFYkCpkgke.kqCgFFkWadek 45 plC++g +l+++++ +g++++R FY+C+++++ k+C+FF+W+dek sp|Q9H5U6|ZCHC4_HUMAN 38 PLCPHGpTLLFVKVT--QGKEETRRFYACSACRDrKDCNFFQWEDEK 82 79*************..6***************************95 PP >> tr|I3L0G6|I3L0G6_HUMAN Uncharacterized protein C4orf21 (Fragment) OS=Homo sapiens GN=C4orf21 PE=2 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 51.0 0.3 9.2e-17 5.4e-13 1 43 [. 245 287 .. 245 289 .. 0.95 Alignments for each domain: == domain 1 score: 51.0 bits; conditional E-value: 9.2e-17 zf-GRF 1 plCkcgrlavlltvrktgpNkGRkFYkCpkgkekqCgFFkWad 43 p+C + ++a+l v+k+gpNkGR FY+C +k C FFkW + tr|I3L0G6|I3L0G6_HUMAN 245 PSCHHSQPAKLVMVKKEGPNKGRLFYTCDGPKADRCKFFKWLE 287 68***************************************87 PP >> sp|Q86YA3|CD021_HUMAN Uncharacterized protein C4orf21 OS=Homo sapiens GN=C4orf21 PE=2 SV=3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 49.2 0.3 3.4e-16 2e-12 1 43 [. 1347 1389 .. 1347 1391 .. 0.95 Alignments for each domain: == domain 1 score: 49.2 bits; conditional E-value: 3.4e-16 zf-GRF 1 plCkcgrlavlltvrktgpNkGRkFYkCpkgkekqCgFFkWad 43 p+C + ++a+l v+k+gpNkGR FY+C +k C FFkW + sp|Q86YA3|CD021_HUMAN 1347 PSCHHSQPAKLVMVKKEGPNKGRLFYTCDGPKADRCKFFKWLE 1389 68***************************************87 PP >> sp|Q9UBZ4|APEX2_HUMAN DNA-(apurinic or apyrimidinic site) lyase 2 OS=Homo sapiens GN=APEX2 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 47.7 0.5 1e-15 6e-12 1 42 [. 467 515 .. 467 517 .. 0.94 Alignments for each domain: == domain 1 score: 47.7 bits; conditional E-value: 1e-15 zf-GRF 1 plCk.cgrlavlltvrktgpNkGRkFYkCpkgke......kqCgFFkWa 42 plC + +++v++tv+k gpN GR FY C+ +++ + C+FF W sp|Q9UBZ4|APEX2_HUMAN 467 PLCGgHREPCVMRTVKKPGPNLGRRFYMCARPRGpptdpsSRCNFFLWS 515 6899777***************************99999999******5 PP >> sp|Q9UNY4-2|TTF2_HUMAN Isoform 2 of Transcription termination factor 2 OS=Homo sapiens GN=TTF2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.7 2.7 1.8e-09 1e-05 2 38 .. 5 39 .. 4 42 .. 0.89 2 ? 0.3 0.5 0.63 3.7e+03 22 43 .. 72 96 .. 66 98 .. 0.73 Alignments for each domain: == domain 1 score: 27.7 bits; conditional E-value: 1.8e-09 zf-GRF 2 lCk.cgrlavlltvrktgpNkGRkFYkCpkgkekqCgF 38 C+ +g++++l+t ++gpNkG+ FY+C + C F sp|Q9UNY4-2|TTF2_HUMAN 5 RCPeHGTFCFLKTGVRDGPNKGKSFYVCRADT---CSF 39 6999*********999************8765...776 PP == domain 2 score: 0.3 bits; conditional E-value: 0.63 zf-GRF 22 GRkFYkCpkgke...kqCgFFkWad 43 R F++C k + Cg W d sp|Q9UNY4-2|TTF2_HUMAN 72 YRLFFRCIRSKAegkRWCGSIPWQD 96 599****766655566799888877 PP >> sp|Q9UNY4|TTF2_HUMAN Transcription termination factor 2 OS=Homo sapiens GN=TTF2 PE=1 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.4 3.1 4.4e-09 2.6e-05 2 38 .. 5 39 .. 4 41 .. 0.89 2 ? -0.5 0.5 1.2 6.8e+03 22 43 .. 72 96 .. 66 98 .. 0.73 Alignments for each domain: == domain 1 score: 26.4 bits; conditional E-value: 4.4e-09 zf-GRF 2 lCk.cgrlavlltvrktgpNkGRkFYkCpkgkekqCgF 38 C+ +g++++l+t ++gpNkG+ FY+C + C F sp|Q9UNY4|TTF2_HUMAN 5 RCPeHGTFCFLKTGVRDGPNKGKSFYVCRADT---CSF 39 6999*********999************8765...776 PP == domain 2 score: -0.5 bits; conditional E-value: 1.2 zf-GRF 22 GRkFYkCpkgke...kqCgFFkWad 43 R F++C k + Cg W d sp|Q9UNY4|TTF2_HUMAN 72 YRLFFRCIRSKAegkRWCGSIPWQD 96 599****766655566799888877 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (45 nodes) Target sequences: 88473 (35070517 residues searched) Passed MSV filter: 3838 (0.0433805); expected 1769.5 (0.02) Passed bias filter: 1577 (0.0178246); expected 1769.5 (0.02) Passed Vit filter: 82 (0.000926836); expected 88.5 (0.001) Passed Fwd filter: 15 (0.000169543); expected 0.9 (1e-05) Initial search space (Z): 88473 [actual number of targets] Domain search space (domZ): 15 [number of targets reported over threshold] # CPU time: 0.30u 0.02s 00:00:00.32 Elapsed: 00:00:00.19 # Mc/sec: 8306.18 // [ok]