# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/zf-GRF.hmm.txt
# target sequence database:        proteomes/Saccharomyces_cerevisiae.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       zf-GRF  [M=45]
Accession:   PF06839.12
Description: GRF zinc finger
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence             Description
    ------- ------ -----    ------- ------ -----   ---- --  --------             -----------
    4.4e-11   41.2   0.7    1.1e-10   39.9   0.7    1.7  1  sp|P38207|APN2_YEAST  DNA-(apurinic or apyrimidinic site) lya


Domain annotation for each sequence (and alignments):
>> sp|P38207|APN2_YEAST  DNA-(apurinic or apyrimidinic site) lyase 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.7   1.8e-14   1.1e-10       1      42 [.     474     520 .]     474     520 .] 0.92

  Alignments for each domain:
  == domain 1  score: 39.9 bits;  conditional E-value: 1.8e-14
                zf-GRF   1 plCkcgrlavlltvrktgpNkGRkFYkCpkgke......kqCgFFkWa 42 
                           plC +g+++ l+t+ kt  N+GRkF+ C   ++      ++CgFF+W+
  sp|P38207|APN2_YEAST 474 PLCRHGEESMLKTS-KTSANPGRKFWICKRSRGdsnnteSSCGFFQWV 520
                           79************.5************9888888888899******5 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (45 nodes)
Target sequences:                         6049  (2936363 residues searched)
Passed MSV filter:                       163  (0.0269466); expected 121.0 (0.02)
Passed bias filter:                       98  (0.016201); expected 121.0 (0.02)
Passed Vit filter:                         4  (0.000661266); expected 6.0 (0.001)
Passed Fwd filter:                         1  (0.000165317); expected 0.1 (1e-05)
Initial search space (Z):               6049  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.02
# Mc/sec: 6606.82
//
[ok]