# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/zf-GRF.hmm.txt
# target sequence database: proteomes/Trichomonas_vaginalis.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: zf-GRF [M=45]
Accession: PF06839.12
Description: GRF zinc finger
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
------ inclusion threshold ------
0.46 12.0 0.2 6.4 8.4 0.0 2.5 2 tr|A2GAQ6|A2GAQ6_TRIVA DDE superfamily endonuclease containi
1.5 10.4 0.1 1.5 10.4 0.1 4.0 7 tr|A2DAD1|A2DAD1_TRIVA Surface antigen BspA-like OS=Trichomo
2.6 9.6 5.9 17 7.0 2.2 2.5 2 tr|A2EA27|A2EA27_TRIVA Uncharacterized protein OS=Trichomona
Domain annotation for each sequence (and alignments):
>> tr|A2GAQ6|A2GAQ6_TRIVA DDE superfamily endonuclease containing protein OS=Trichomonas vaginalis OX=5722 GN=TVAG_3236
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 8.4 0.0 0.00038 6.4 22 36 .. 81 95 .. 74 96 .. 0.86
2 ? 0.8 0.0 0.092 1.5e+03 21 31 .. 165 175 .. 158 179 .. 0.76
Alignments for each domain:
== domain 1 score: 8.4 bits; conditional E-value: 0.00038
zf-GRF 22 GRkFYkCpkgkekqC 36
GR FY Cpk + C
tr|A2GAQ6|A2GAQ6_TRIVA 81 GRRFYLCPKDDSDLC 95
9********987666 PP
== domain 2 score: 0.8 bits; conditional E-value: 0.092
zf-GRF 21 kGRkFYkCpkg 31
+ + +++Cp
tr|A2GAQ6|A2GAQ6_TRIVA 165 EPKRYFACPGE 175
6699*****76 PP
>> tr|A2DAD1|A2DAD1_TRIVA Surface antigen BspA-like OS=Trichomonas vaginalis OX=5722 GN=TVAG_477080 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.6 0.1 1 1.7e+04 23 32 .. 29 38 .. 27 44 .. 0.75
2 ? 10.4 0.1 9e-05 1.5 22 38 .. 51 69 .. 49 71 .. 0.92
3 ? -3.7 0.0 2.3 3.8e+04 24 31 .. 99 106 .. 98 108 .. 0.73
4 ? -1.9 0.1 0.62 1e+04 2 8 .. 146 152 .. 145 160 .. 0.76
5 ? -1.9 0.1 0.61 1e+04 24 30 .. 168 174 .. 165 177 .. 0.81
6 ? -2.1 0.1 0.73 1.2e+04 24 30 .. 191 197 .. 191 200 .. 0.76
7 ? -2.1 0.1 0.73 1.2e+04 24 30 .. 214 220 .. 214 223 .. 0.76
Alignments for each domain:
== domain 1 score: -2.6 bits; conditional E-value: 1
zf-GRF 23 RkFYkCpkgk 32
R+F C++
tr|A2DAD1|A2DAD1_TRIVA 29 RAFQYCSNLT 38
7888898765 PP
== domain 2 score: 10.4 bits; conditional E-value: 9e-05
zf-GRF 22 GRkFYkCpkgke..kqCgF 38
G +FY Cp +e +C+F
tr|A2DAD1|A2DAD1_TRIVA 51 GHAFYGCPSIQEftLNCNF 69
899*********9989**9 PP
== domain 3 score: -3.7 bits; conditional E-value: 2.3
zf-GRF 24 kFYkCpkg 31
+F Cp+
tr|A2DAD1|A2DAD1_TRIVA 99 AFNNCPLL 106
58889976 PP
== domain 4 score: -1.9 bits; conditional E-value: 0.62
zf-GRF 2 lCkcgrl 8
+C+c l
tr|A2DAD1|A2DAD1_TRIVA 146 FCNCKSL 152
7999855 PP
== domain 5 score: -1.9 bits; conditional E-value: 0.61
zf-GRF 24 kFYkCpk 30
+FY C
tr|A2DAD1|A2DAD1_TRIVA 168 AFYDCKS 174
6****75 PP
== domain 6 score: -2.1 bits; conditional E-value: 0.73
zf-GRF 24 kFYkCpk 30
+FY C
tr|A2DAD1|A2DAD1_TRIVA 191 AFYDCKS 197
59***75 PP
== domain 7 score: -2.1 bits; conditional E-value: 0.73
zf-GRF 24 kFYkCpk 30
+FY C
tr|A2DAD1|A2DAD1_TRIVA 214 AFYDCKS 220
59***75 PP
>> tr|A2EA27|A2EA27_TRIVA Uncharacterized protein OS=Trichomonas vaginalis OX=5722 GN=TVAG_483840 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 3.5 0.1 0.013 2.2e+02 17 29 .. 90 102 .. 78 108 .. 0.79
2 ? 7.0 2.2 0.001 17 20 38 .. 294 315 .. 284 317 .. 0.89
Alignments for each domain:
== domain 1 score: 3.5 bits; conditional E-value: 0.013
zf-GRF 17 tgpNkGRkFYkCp 29
++N++ FY+C
tr|A2EA27|A2EA27_TRIVA 90 FPENETATFYRCH 102
579*********6 PP
== domain 2 score: 7.0 bits; conditional E-value: 0.001
zf-GRF 20 NkGRkFYkCpkgke...kqCgF 38
Nk F+ Cp++++ k C+F
tr|A2EA27|A2EA27_TRIVA 294 NKFNFFFNCPTPSNvifKGCNF 315
55566****************9 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (45 nodes)
Target sequences: 50190 (17055200 residues searched)
Passed MSV filter: 1572 (0.031321); expected 1003.8 (0.02)
Passed bias filter: 937 (0.0186691); expected 1003.8 (0.02)
Passed Vit filter: 54 (0.00107591); expected 50.2 (0.001)
Passed Fwd filter: 4 (7.96972e-05); expected 0.5 (1e-05)
Initial search space (Z): 50190 [actual number of targets]
Domain search space (domZ): 3 [number of targets reported over threshold]
# CPU time: 0.17u 0.01s 00:00:00.18 Elapsed: 00:00:00.11
# Mc/sec: 6977.13
//
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