# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/zf-GRF.hmm.txt
# target sequence database:        proteomes/Trypanosoma_brucei.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       zf-GRF  [M=45]
Accession:   PF06839.12
Description: GRF zinc finger
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence               Description
    ------- ------ -----    ------- ------ -----   ---- --  --------               -----------
    5.2e-07   28.6   0.8    2.1e-06   26.7   0.8    2.2  1  tr|Q383X7|Q383X7_TRYB2  DNA topoisomerase OS=Trypanosoma bruc


Domain annotation for each sequence (and alignments):
>> tr|Q383X7|Q383X7_TRYB2  DNA topoisomerase OS=Trypanosoma brucei brucei (strain 927/4 GUTat10.1) OX=185431 GN=Tb11.01.
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.8   2.5e-10   2.1e-06       1      43 [.     880     918 .]     880     918 .] 0.94

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 2.5e-10
                  zf-GRF   1 plCkcgrlavlltvrktgpNkGRkFYkCpkgkekqCgFFkWad 43 
                             plC cg +av l++  +   +GR F kC   k   C FF+W d
  tr|Q383X7|Q383X7_TRYB2 880 PLCHCGLPAVHLVSG-QAASRGRRFVKCDGSK---CQFFQWLD 918
                             79************7.************9888...******87 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (45 nodes)
Target sequences:                         8561  (4332363 residues searched)
Passed MSV filter:                       363  (0.0424016); expected 171.2 (0.02)
Passed bias filter:                      175  (0.0204415); expected 171.2 (0.02)
Passed Vit filter:                         9  (0.00105128); expected 8.6 (0.001)
Passed Fwd filter:                         1  (0.000116809); expected 0.1 (1e-05)
Initial search space (Z):               8561  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.05u 0.00s 00:00:00.05 Elapsed: 00:00:00.04
# Mc/sec: 4873.91
//
[ok]