library(ninetails)

reticulate::use_condaenv("r-ninetails")
 

results_nt_562 <- ninetails::check_tails(
  nanopolish = '/no_backup/enovoa/nextflow_outputs/k562/polya_results.tsv', 
  sequencing_summary = '/no_backup/enovoa/nextflow_outputs/k562/sequencing_summary_concat.txt', 
  workspace = '/no_backup/enovoa/nextflow_outputs/k562/mop_preprocess/k562_raw',
  num_cores = 8,
  basecall_group = 'Basecall_1D_000',
  pass_only=TRUE,
  save_dir = 'test_ninetails_k562'
)