params {
    conffile            = "/no_backup_isis/enovoa/data/ont/raul_mendes_pAtail/RNA121192/RNA121192/20190910_1316_MN27184_FAL15400_ef2e3b1b/final_summary.txt"
    fast5               = "/no_backup_isis/enovoa/data/ont/raul_mendes_pAtail/RNA121192/RNA121192/20190910_1316_MN27184_FAL15400_ef2e3b1b/fast5"
    fastq               = ""

    reference           = "/no_backup_isis/enovoa/reference_fasta/mouse/gencode.vM24.transcripts.fa.gz"
    annotation          = ""
    ref_type            = "transcriptome"

    pars_tools          = "$baseDir/tool_opts/drna_tool_splice_opt.tsv"
    barcodes            = "/users/enovoa/ntodorov/tests_etc/MoP3_results/raul_mende_pAtailRNA121192s_barcodes.txt"

    output              = "/users/enovoa/ntodorov/tests_etc/MoP3_results"
    qualityqc           = 5
    granularity         = 1

    basecalling         = "guppy"
    GPU                 = "ON"
    demultiplexing      = "deeplexicon"
    demulti_fast5       = "YES" 

    filtering           = "NO"

    mapping             = "minimap2"
    counting            = "nanocount"
    discovery           = "bambu"

    cram_conv           = "YES"
    subsampling_cram    = 50

    saveSpace           = "NO"

    email               = "nikola.todorov@crg.es"
}