############################################################################### ## Gencode captured targets (static) ############################################################################### track input superTrack on shortLabel Input (targets) longLabel Input (Captured regions) priority 10 visibility dense html ../Input.html ### Dynamic part starts here track Cap1_targets bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/mm_Cap1_targets.bb shortLabel Cap1 targets longLabel GENCODE Capture Cap1, transcript targets type bigBed 12 itemRgb on searchIndex name parent input visibility dense track Cap1_probes bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/mm_Cap1_probes.bb shortLabel Cap1 probes longLabel GENCODE Capture Cap1, capture probes type bigBed 12 parent input visibility dense color 153,153,153 ############################################################################### ## FANTOM5 true TSSs ############################################################################### track fantom5TrueTss superTrack on #compositeTrack on shortLabel FANTOM5 true TSSs html ../fantom5TrueTss longLabel FANTOM5 true TSS peaks priority 10 visibility dense track FANTOM5CAGEtrueTSSs bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/mm.TSS.strict_mm10.color.bb shortLabel FANTOM5 CAGE true TSSs longLabel FANTOM5 CAGE true TSSs type bigBed 9 parent fantom5TrueTss visibility dense itemRgb on ############################################################################### ## Output, read alignments (BAMs+bigwigs) etc ############################################################################### track output superTrack on #compositeTrack on shortLabel Output html ../Output longLabel Capture output (read alignments, read density, merged transcripts, polyA sites) priority 10 visibility dense track bams compositeTrack on subGroup1 filter Views primAlign=All_PacBio_reads polyAreads=PolyA_PacBio_reads bothAdapters=PacBio_reads_with_both_library_adapters hiSeq=Capture_HiSeq_reads subGroup2 sample Samples all=all Brain=Brain E7=E7 E15=E15 Heart=Heart Liver=Liver Testes=Testes Undeter=Undeter dimensions dimX=sample dimY=filter parent output shortLabel BAMs longLabel BAM files (PacBio + HiSeq) - mapped with STAR (not stranded) type bam visibility hide bamColorMode gray dragAndDrop subTracks #allButtonPair on track Cap1_mmAll_all_bothAdapters parent bams bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/mmAll_Cap1_all_bothAdapters.bam shortLabel Cap1 mmAll all bothAdapters longLabel GENCODE Capture Cap1, mmAll, tissue: all, filter: bothAdapters type bam view bothAdapters viewUi on subGroups filter=bothAdapters sample=all # visibility dense # bamColorMode gray track Cap1_mmAll_Brain_bothAdapters parent bams bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/mmAll_Cap1_Brain_bothAdapters.bam shortLabel Cap1 mmAll Brain bothAdapters longLabel GENCODE Capture Cap1, mmAll, tissue: Brain, filter: bothAdapters type bam view bothAdapters viewUi on subGroups filter=bothAdapters sample=Brain # visibility dense # bamColorMode gray track Cap1_mmAll_Brain_hiSeq parent bams bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/mmAll_Cap1_Brain_hiSeq.bam shortLabel Cap1 mmAll Brain hiSeq longLabel GENCODE Capture Cap1, mmAll, tissue: Brain, filter: hiSeq type bam view hiSeq viewUi on subGroups filter=hiSeq sample=Brain # visibility dense # bamColorMode gray track Cap1_mmAll_Brain_primAlign parent bams bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/mmAll_Cap1_Brain_primAlign.bam shortLabel Cap1 mmAll Brain primAlign longLabel GENCODE Capture Cap1, mmAll, tissue: Brain, filter: primAlign type bam view primAlign viewUi on subGroups filter=primAlign sample=Brain # visibility dense # bamColorMode gray track Cap1_mmAll_E15_bothAdapters parent bams bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/mmAll_Cap1_E15_bothAdapters.bam shortLabel Cap1 mmAll E15 bothAdapters longLabel GENCODE Capture Cap1, mmAll, tissue: E15, filter: bothAdapters type bam view bothAdapters viewUi on subGroups filter=bothAdapters sample=E15 # visibility dense # bamColorMode gray track Cap1_mmAll_E15_hiSeq parent bams bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/mmAll_Cap1_E15_hiSeq.bam shortLabel Cap1 mmAll E15 hiSeq longLabel GENCODE Capture Cap1, mmAll, tissue: E15, filter: hiSeq type bam view hiSeq viewUi on subGroups filter=hiSeq sample=E15 # visibility dense # bamColorMode gray track Cap1_mmAll_E15_primAlign parent bams bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/mmAll_Cap1_E15_primAlign.bam shortLabel Cap1 mmAll E15 primAlign longLabel GENCODE Capture Cap1, mmAll, tissue: E15, filter: primAlign type bam view primAlign viewUi on subGroups filter=primAlign sample=E15 # visibility dense # bamColorMode gray track Cap1_mmAll_E7_bothAdapters parent bams bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/mmAll_Cap1_E7_bothAdapters.bam shortLabel Cap1 mmAll E7 bothAdapters longLabel GENCODE Capture Cap1, mmAll, tissue: E7, filter: bothAdapters type bam view bothAdapters viewUi on subGroups filter=bothAdapters sample=E7 # visibility dense # bamColorMode gray track Cap1_mmAll_E7_hiSeq parent bams bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/mmAll_Cap1_E7_hiSeq.bam shortLabel Cap1 mmAll E7 hiSeq longLabel GENCODE Capture Cap1, mmAll, tissue: E7, filter: hiSeq type bam view hiSeq viewUi on subGroups filter=hiSeq sample=E7 # visibility dense # bamColorMode gray track Cap1_mmAll_E7_primAlign parent bams bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/mmAll_Cap1_E7_primAlign.bam shortLabel Cap1 mmAll E7 primAlign longLabel GENCODE Capture Cap1, mmAll, tissue: E7, filter: primAlign type bam view primAlign viewUi on subGroups filter=primAlign sample=E7 # visibility dense # bamColorMode gray track Cap1_mmAll_Heart_bothAdapters parent bams bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/mmAll_Cap1_Heart_bothAdapters.bam shortLabel Cap1 mmAll Heart bothAdapters longLabel GENCODE Capture Cap1, mmAll, tissue: Heart, filter: bothAdapters type bam view bothAdapters viewUi on subGroups filter=bothAdapters sample=Heart # visibility dense # bamColorMode gray track Cap1_mmAll_Heart_hiSeq parent bams bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/mmAll_Cap1_Heart_hiSeq.bam shortLabel Cap1 mmAll Heart hiSeq longLabel GENCODE Capture Cap1, mmAll, tissue: Heart, filter: hiSeq type bam view hiSeq viewUi on subGroups filter=hiSeq sample=Heart # visibility dense # bamColorMode gray track Cap1_mmAll_Heart_primAlign parent bams bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/mmAll_Cap1_Heart_primAlign.bam shortLabel Cap1 mmAll Heart primAlign longLabel GENCODE Capture Cap1, mmAll, tissue: Heart, filter: primAlign type bam view primAlign viewUi on subGroups filter=primAlign sample=Heart # visibility dense # bamColorMode gray track Cap1_mmAll_Liver_bothAdapters parent bams bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/mmAll_Cap1_Liver_bothAdapters.bam shortLabel Cap1 mmAll Liver bothAdapters longLabel GENCODE Capture Cap1, mmAll, tissue: Liver, filter: bothAdapters type bam view bothAdapters viewUi on subGroups filter=bothAdapters sample=Liver # visibility dense # bamColorMode gray track Cap1_mmAll_Liver_hiSeq parent bams bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/mmAll_Cap1_Liver_hiSeq.bam shortLabel Cap1 mmAll Liver hiSeq longLabel GENCODE Capture Cap1, mmAll, tissue: Liver, filter: hiSeq type bam view hiSeq viewUi on subGroups filter=hiSeq sample=Liver # visibility dense # bamColorMode gray track Cap1_mmAll_Liver_primAlign parent bams bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/mmAll_Cap1_Liver_primAlign.bam shortLabel Cap1 mmAll Liver primAlign longLabel GENCODE Capture Cap1, mmAll, tissue: Liver, filter: primAlign type bam view primAlign viewUi on subGroups filter=primAlign sample=Liver # visibility dense # bamColorMode gray track Cap1_mmAll_Testes_bothAdapters parent bams bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/mmAll_Cap1_Testes_bothAdapters.bam shortLabel Cap1 mmAll Testes bothAdapters longLabel GENCODE Capture Cap1, mmAll, tissue: Testes, filter: bothAdapters type bam view bothAdapters viewUi on subGroups filter=bothAdapters sample=Testes # visibility dense # bamColorMode gray track Cap1_mmAll_Testes_hiSeq parent bams bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/mmAll_Cap1_Testes_hiSeq.bam shortLabel Cap1 mmAll Testes hiSeq longLabel GENCODE Capture Cap1, mmAll, tissue: Testes, filter: hiSeq type bam view hiSeq viewUi on subGroups filter=hiSeq sample=Testes # visibility dense # bamColorMode gray track Cap1_mmAll_Testes_primAlign parent bams bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/mmAll_Cap1_Testes_primAlign.bam shortLabel Cap1 mmAll Testes primAlign longLabel GENCODE Capture Cap1, mmAll, tissue: Testes, filter: primAlign type bam view primAlign viewUi on subGroups filter=primAlign sample=Testes # visibility dense # bamColorMode gray track Cap1_mmAll_Undeter_bothAdapters parent bams bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/mmAll_Cap1_Undeter_bothAdapters.bam shortLabel Cap1 mmAll Undeter bothAdapters longLabel GENCODE Capture Cap1, mmAll, tissue: Undeter, filter: bothAdapters type bam view bothAdapters viewUi on subGroups filter=bothAdapters sample=Undeter # visibility dense # bamColorMode gray track Cap1_mmAll_Undeter_primAlign parent bams bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/mmAll_Cap1_Undeter_primAlign.bam shortLabel Cap1 mmAll Undeter primAlign longLabel GENCODE Capture Cap1, mmAll, tissue: Undeter, filter: primAlign type bam view primAlign viewUi on subGroups filter=primAlign sample=Undeter # visibility dense # bamColorMode gray track readSignal compositeTrack on subGroup1 strand Views plus=plus_strand minus=minus_strand subGroup2 sample Samples all=all Brain=Brain E7=E7 E15=E15 Heart=Heart Liver=Liver Testes=Testes Undeter=Undeter dimensions dimX=sample dimY=strand parent output shortLabel PacBio Signal longLabel PacBio read signal files - stranded genome coverage for reads with 100% canonical SJs and/or polyA (BigWigs) type bigWig visibility full dragAndDrop subTracks #allButtonPair on track Cap1_mmAll_all_minus parent readSignal bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/mmAll_Cap1_all_stranded.exons.all.gtag.-.bw shortLabel Cap1 mmAll all minus longLabel GENCODE Capture Cap1, mmAll, tissue: all, minus strand type bigWig viewUi on subGroups strand=minus sample=all alwaysZero on color 0,76,153 autoScale on maxHeightPixels 128:28:11 #visibility full track Cap1_mmAll_all_plus parent readSignal bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/mmAll_Cap1_all_stranded.exons.all.gtag.+.bw shortLabel Cap1 mmAll all plus longLabel GENCODE Capture Cap1, mmAll, tissue: all, plus strand type bigWig viewUi on subGroups strand=plus sample=all alwaysZero on color 0,76,153 autoScale on maxHeightPixels 128:28:11 #visibility full track Cap1_mmAll_Brain_minus parent readSignal bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/mmAll_Cap1_Brain_stranded.exons.all.gtag.-.bw shortLabel Cap1 mmAll Brain minus longLabel GENCODE Capture Cap1, mmAll, tissue: Brain, minus strand type bigWig viewUi on subGroups strand=minus sample=Brain alwaysZero on color 0,76,153 autoScale on maxHeightPixels 128:28:11 #visibility full track Cap1_mmAll_Brain_plus parent readSignal bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/mmAll_Cap1_Brain_stranded.exons.all.gtag.+.bw shortLabel Cap1 mmAll Brain plus longLabel GENCODE Capture Cap1, mmAll, tissue: Brain, plus strand type bigWig viewUi on subGroups strand=plus sample=Brain alwaysZero on color 0,76,153 autoScale on maxHeightPixels 128:28:11 #visibility full track Cap1_mmAll_E15_minus parent readSignal bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/mmAll_Cap1_E15_stranded.exons.all.gtag.-.bw shortLabel Cap1 mmAll E15 minus longLabel GENCODE Capture Cap1, mmAll, tissue: E15, minus strand type bigWig viewUi on subGroups strand=minus sample=E15 alwaysZero on color 0,76,153 autoScale on maxHeightPixels 128:28:11 #visibility full track Cap1_mmAll_E15_plus parent readSignal bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/mmAll_Cap1_E15_stranded.exons.all.gtag.+.bw shortLabel Cap1 mmAll E15 plus longLabel GENCODE Capture Cap1, mmAll, tissue: E15, plus strand type bigWig viewUi on subGroups strand=plus sample=E15 alwaysZero on color 0,76,153 autoScale on maxHeightPixels 128:28:11 #visibility full track Cap1_mmAll_E7_minus parent readSignal bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/mmAll_Cap1_E7_stranded.exons.all.gtag.-.bw shortLabel Cap1 mmAll E7 minus longLabel GENCODE Capture Cap1, mmAll, tissue: E7, minus strand type bigWig viewUi on subGroups strand=minus sample=E7 alwaysZero on color 0,76,153 autoScale on maxHeightPixels 128:28:11 #visibility full track Cap1_mmAll_E7_plus parent readSignal bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/mmAll_Cap1_E7_stranded.exons.all.gtag.+.bw shortLabel Cap1 mmAll E7 plus longLabel GENCODE Capture Cap1, mmAll, tissue: E7, plus strand type bigWig viewUi on subGroups strand=plus sample=E7 alwaysZero on color 0,76,153 autoScale on maxHeightPixels 128:28:11 #visibility full track Cap1_mmAll_Heart_minus parent readSignal bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/mmAll_Cap1_Heart_stranded.exons.all.gtag.-.bw shortLabel Cap1 mmAll Heart minus longLabel GENCODE Capture Cap1, mmAll, tissue: Heart, minus strand type bigWig viewUi on subGroups strand=minus sample=Heart alwaysZero on color 0,76,153 autoScale on maxHeightPixels 128:28:11 #visibility full track Cap1_mmAll_Heart_plus parent readSignal bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/mmAll_Cap1_Heart_stranded.exons.all.gtag.+.bw shortLabel Cap1 mmAll Heart plus longLabel GENCODE Capture Cap1, mmAll, tissue: Heart, plus strand type bigWig viewUi on subGroups strand=plus sample=Heart alwaysZero on color 0,76,153 autoScale on maxHeightPixels 128:28:11 #visibility full track Cap1_mmAll_Liver_minus parent readSignal bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/mmAll_Cap1_Liver_stranded.exons.all.gtag.-.bw shortLabel Cap1 mmAll Liver minus longLabel GENCODE Capture Cap1, mmAll, tissue: Liver, minus strand type bigWig viewUi on subGroups strand=minus sample=Liver alwaysZero on color 0,76,153 autoScale on maxHeightPixels 128:28:11 #visibility full track Cap1_mmAll_Liver_plus parent readSignal bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/mmAll_Cap1_Liver_stranded.exons.all.gtag.+.bw shortLabel Cap1 mmAll Liver plus longLabel GENCODE Capture Cap1, mmAll, tissue: Liver, plus strand type bigWig viewUi on subGroups strand=plus sample=Liver alwaysZero on color 0,76,153 autoScale on maxHeightPixels 128:28:11 #visibility full track Cap1_mmAll_Testes_minus parent readSignal bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/mmAll_Cap1_Testes_stranded.exons.all.gtag.-.bw shortLabel Cap1 mmAll Testes minus longLabel GENCODE Capture Cap1, mmAll, tissue: Testes, minus strand type bigWig viewUi on subGroups strand=minus sample=Testes alwaysZero on color 0,76,153 autoScale on maxHeightPixels 128:28:11 #visibility full track Cap1_mmAll_Testes_plus parent readSignal bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/mmAll_Cap1_Testes_stranded.exons.all.gtag.+.bw shortLabel Cap1 mmAll Testes plus longLabel GENCODE Capture Cap1, mmAll, tissue: Testes, plus strand type bigWig viewUi on subGroups strand=plus sample=Testes alwaysZero on color 0,76,153 autoScale on maxHeightPixels 128:28:11 #visibility full track Cap1_mmAll_Undeter_minus parent readSignal bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/mmAll_Cap1_Undeter_stranded.exons.all.gtag.-.bw shortLabel Cap1 mmAll Undeter minus longLabel GENCODE Capture Cap1, mmAll, tissue: Undeter, minus strand type bigWig viewUi on subGroups strand=minus sample=Undeter alwaysZero on color 0,76,153 autoScale on maxHeightPixels 128:28:11 #visibility full track Cap1_mmAll_Undeter_plus parent readSignal bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/mmAll_Cap1_Undeter_stranded.exons.all.gtag.+.bw shortLabel Cap1 mmAll Undeter plus longLabel GENCODE Capture Cap1, mmAll, tissue: Undeter, plus strand type bigWig viewUi on subGroups strand=plus sample=Undeter alwaysZero on color 0,76,153 autoScale on maxHeightPixels 128:28:11 #visibility full track hiSeqReadSignal compositeTrack on subGroup1 strand Views unstranded=unstranded subGroup2 sample Samples all=all Brain=Brain E7=E7 E15=E15 Heart=Heart Liver=Liver Testes=Testes Undeter=Undeter dimensions dimX=sample dimY=strand parent output shortLabel HiSeq Signal longLabel HiSeq read signal files (BigWigs) type bigWig visibility dense dragAndDrop subTracks #allButtonPair on track Cap1_mmAll_Brain_mmAll_Cap1_Brain_hiSeqbigWig parent hiSeqReadSignal bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/mmAll_Cap1_Brain_hiSeq.bw shortLabel Cap1 mmAll Brain mmAll_Cap1_Brain_hiSeq bigWig longLabel GENCODE Capture Cap1, mmAll, tissue: Brain, mmAll_Cap1_Brain_hiSeq unstranded type bigWig viewUi on subGroups strand=unstranded sample=Brain alwaysZero on color 76,0,153 autoScale on maxHeightPixels 128:28:11 #visibility full track Cap1_mmAll_E15_mmAll_Cap1_E15_hiSeqbigWig parent hiSeqReadSignal bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/mmAll_Cap1_E15_hiSeq.bw shortLabel Cap1 mmAll E15 mmAll_Cap1_E15_hiSeq bigWig longLabel GENCODE Capture Cap1, mmAll, tissue: E15, mmAll_Cap1_E15_hiSeq unstranded type bigWig viewUi on subGroups strand=unstranded sample=E15 alwaysZero on color 76,0,153 autoScale on maxHeightPixels 128:28:11 #visibility full track Cap1_mmAll_E7_mmAll_Cap1_E7_hiSeqbigWig parent hiSeqReadSignal bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/mmAll_Cap1_E7_hiSeq.bw shortLabel Cap1 mmAll E7 mmAll_Cap1_E7_hiSeq bigWig longLabel GENCODE Capture Cap1, mmAll, tissue: E7, mmAll_Cap1_E7_hiSeq unstranded type bigWig viewUi on subGroups strand=unstranded sample=E7 alwaysZero on color 76,0,153 autoScale on maxHeightPixels 128:28:11 #visibility full track Cap1_mmAll_Heart_mmAll_Cap1_Heart_hiSeqbigWig parent hiSeqReadSignal bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/mmAll_Cap1_Heart_hiSeq.bw shortLabel Cap1 mmAll Heart mmAll_Cap1_Heart_hiSeq bigWig longLabel GENCODE Capture Cap1, mmAll, tissue: Heart, mmAll_Cap1_Heart_hiSeq unstranded type bigWig viewUi on subGroups strand=unstranded sample=Heart alwaysZero on color 76,0,153 autoScale on maxHeightPixels 128:28:11 #visibility full track Cap1_mmAll_Liver_mmAll_Cap1_Liver_hiSeqbigWig parent hiSeqReadSignal bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/mmAll_Cap1_Liver_hiSeq.bw shortLabel Cap1 mmAll Liver mmAll_Cap1_Liver_hiSeq bigWig longLabel GENCODE Capture Cap1, mmAll, tissue: Liver, mmAll_Cap1_Liver_hiSeq unstranded type bigWig viewUi on subGroups strand=unstranded sample=Liver alwaysZero on color 76,0,153 autoScale on maxHeightPixels 128:28:11 #visibility full track Cap1_mmAll_Testes_mmAll_Cap1_Testes_hiSeqbigWig parent hiSeqReadSignal bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/mmAll_Cap1_Testes_hiSeq.bw shortLabel Cap1 mmAll Testes mmAll_Cap1_Testes_hiSeq bigWig longLabel GENCODE Capture Cap1, mmAll, tissue: Testes, mmAll_Cap1_Testes_hiSeq unstranded type bigWig viewUi on subGroups strand=unstranded sample=Testes alwaysZero on color 76,0,153 autoScale on maxHeightPixels 128:28:11 #visibility full track stringTie compositeTrack on subGroup1 filter Views all=All_transcripts subGroup2 sample Samples all=all Brain=Brain E7=E7 E15=E15 Heart=Heart Liver=Liver Testes=Testes Undeter=Undeter dimensions dimX=sample dimY=filter parent output itemRgb on shortLabel StringTie transcripts longLabel Captured HiSeq-based StringTie transcript models type bigBed 12 visibility pack dragAndDrop subTracks track Cap1_mmAll_all_StringTie bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/mmAll_Cap1_all_hiSeqstringTie.bb shortLabel Cap1 mmAll all StringTie longLabel GENCODE Capture Cap1, mmAll, tissue: all, HiSeq-based StringTie transcript models type bigBed 12 searchIndex name parent stringTie viewUi on subGroups filter=StringTie sample=all visibility full track Cap1_mmAll_Brain_StringTie bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/mmAll_Cap1_Brain_hiSeqstringTie.bb shortLabel Cap1 mmAll Brain StringTie longLabel GENCODE Capture Cap1, mmAll, tissue: Brain, HiSeq-based StringTie transcript models type bigBed 12 searchIndex name parent stringTie viewUi on subGroups filter=StringTie sample=Brain visibility full track Cap1_mmAll_E15_StringTie bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/mmAll_Cap1_E15_hiSeqstringTie.bb shortLabel Cap1 mmAll E15 StringTie longLabel GENCODE Capture Cap1, mmAll, tissue: E15, HiSeq-based StringTie transcript models type bigBed 12 searchIndex name parent stringTie viewUi on subGroups filter=StringTie sample=E15 visibility full track Cap1_mmAll_E7_StringTie bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/mmAll_Cap1_E7_hiSeqstringTie.bb shortLabel Cap1 mmAll E7 StringTie longLabel GENCODE Capture Cap1, mmAll, tissue: E7, HiSeq-based StringTie transcript models type bigBed 12 searchIndex name parent stringTie viewUi on subGroups filter=StringTie sample=E7 visibility full track Cap1_mmAll_Heart_StringTie bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/mmAll_Cap1_Heart_hiSeqstringTie.bb shortLabel Cap1 mmAll Heart StringTie longLabel GENCODE Capture Cap1, mmAll, tissue: Heart, HiSeq-based StringTie transcript models type bigBed 12 searchIndex name parent stringTie viewUi on subGroups filter=StringTie sample=Heart visibility full track Cap1_mmAll_Liver_StringTie bigDataUrl http://public_docs.crg.es/rguigo/Papers/2017_lagarde-uszczynska_CLS/data/trackHub//dataFiles/bigBeds/mmAll_Cap1_Liver_hiSeqstringTie.bb shortLabel Cap1 mmAll 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