# Super track info
track ChIP-seq
superTrack on show
shortLabel ChIP-seq
longLabel ChIP-seq
visibility 0

# Parent track info
track ChIP-seq.histoneMarks.bw
dragAndDrop subTracks
compositeTrack on
shortLabel ChIP-seq.histoneMarks.bw
longLabel ChIP-Seq - histone marks - pile-up signal
parent ChIP-seq
type bigWig
viewLimits 0:80
autoScale on
maxHeightPixels 30
visibility 0
subGroup1 mark mark \
H3K27ac=H3K27ac \
H3K4me3=H3K4me3;
subGroup2 stage stage \
ESC=ESC \
NPC=NPC \
Neuron=Neuron;
subGroup3 view view \
pileupSignal=pileupSignal;
subGroup4 replicate replicate \
1=1 \
2=2;
sortOrder mark=+ stage=+ view=+ replicate=+
dimensions dimX=mark dimY=stage dimA=replicate dimB=view

track ESCH3K27acX1.pileup_signal.bw
bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/intronic_enhancers_hub/ChIP-Seq.files/ESCH3K27acX1.pileup_signal.bw
shortLabel "ESCH3K27acX1,pileupSignal"
parent ChIP-seq.histoneMarks.bw
color 99,0,57
type bigWig
subGroups mark=H3K27ac stage=ESC view=pileupSignal replicate=1

track ESCH3K27acX2.pileup_signal.bw
bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/intronic_enhancers_hub/ChIP-Seq.files/ESCH3K27acX2.pileup_signal.bw
shortLabel "ESCH3K27acX2,pileupSignal"
parent ChIP-seq.histoneMarks.bw
color 99,0,57
type bigWig
subGroups mark=H3K27ac stage=ESC view=pileupSignal replicate=2

track ESCH3K4me3X1.pileup_signal.bw
bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/intronic_enhancers_hub/ChIP-Seq.files/ESCH3K4me3X1.pileup_signal.bw
shortLabel "ESCH3K4me3X1,pileupSignal"
parent ChIP-seq.histoneMarks.bw
color 29,41,118
type bigWig
subGroups mark=H3K4me3 stage=ESC view=pileupSignal replicate=1

track ESCH3K4me3X2.pileup_signal.bw
bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/intronic_enhancers_hub/ChIP-Seq.files/ESCH3K4me3X2.pileup_signal.bw
shortLabel "ESCH3K4me3X2,pileupSignal"
parent ChIP-seq.histoneMarks.bw
color 29,41,118
type bigWig
subGroups mark=H3K4me3 stage=ESC view=pileupSignal replicate=2

track NPCH3K27acX1.pileup_signal.bw
bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/intronic_enhancers_hub/ChIP-Seq.files/NPCH3K27acX1.pileup_signal.bw
shortLabel "NPCH3K27acX1,pileupSignal"
parent ChIP-seq.histoneMarks.bw
color 99,0,57
type bigWig
subGroups mark=H3K27ac stage=NPC view=pileupSignal replicate=1

track NPCH3K27acX2.pileup_signal.bw
bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/intronic_enhancers_hub/ChIP-Seq.files/NPCH3K27acX2.pileup_signal.bw
shortLabel "NPCH3K27acX2,pileupSignal"
parent ChIP-seq.histoneMarks.bw
color 99,0,57
type bigWig
subGroups mark=H3K27ac stage=NPC view=pileupSignal replicate=2

track NPCH3K4me3X1.pileup_signal.bw
bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/intronic_enhancers_hub/ChIP-Seq.files/NPCH3K4me3X1.pileup_signal.bw
shortLabel "NPCH3K4me3X1,pileupSignal"
parent ChIP-seq.histoneMarks.bw
color 29,41,118
type bigWig
subGroups mark=H3K4me3 stage=NPC view=pileupSignal replicate=1

track NPCH3K4me3X2.pileup_signal.bw
bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/intronic_enhancers_hub/ChIP-Seq.files/NPCH3K4me3X2.pileup_signal.bw
shortLabel "NPCH3K4me3X2,pileupSignal"
parent ChIP-seq.histoneMarks.bw
color 29,41,118
type bigWig
subGroups mark=H3K4me3 stage=NPC view=pileupSignal replicate=2

track NeuronH3K27acX1.pileup_signal.bw
bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/intronic_enhancers_hub/ChIP-Seq.files/NeuronH3K27acX1.pileup_signal.bw
shortLabel "NeuronH3K27acX1,pileupSignal"
parent ChIP-seq.histoneMarks.bw
color 99,0,57
type bigWig
subGroups mark=H3K27ac stage=Neuron view=pileupSignal replicate=1

track NeuronH3K27acX2.pileup_signal.bw
bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/intronic_enhancers_hub/ChIP-Seq.files/NeuronH3K27acX2.pileup_signal.bw
shortLabel "NeuronH3K27acX2,pileupSignal"
parent ChIP-seq.histoneMarks.bw
color 99,0,57
type bigWig
subGroups mark=H3K27ac stage=Neuron view=pileupSignal replicate=2

track NeuronH3K4me3X1.pileup_signal.bw
bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/intronic_enhancers_hub/ChIP-Seq.files/NeuronH3K4me3X1.pileup_signal.bw
shortLabel "NeuronH3K4me3X1,pileupSignal"
parent ChIP-seq.histoneMarks.bw
color 29,41,118
type bigWig
subGroups mark=H3K4me3 stage=Neuron view=pileupSignal replicate=1

track NeuronH3K4me3X2.pileup_signal.bw
bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/intronic_enhancers_hub/ChIP-Seq.files/NeuronH3K4me3X2.pileup_signal.bw
shortLabel "NeuronH3K4me3X2,pileupSignal"
parent ChIP-seq.histoneMarks.bw
color 29,41,118
type bigWig
subGroups mark=H3K4me3 stage=Neuron view=pileupSignal replicate=2

# Parent track info
track ChIP-seq.histoneMarks.bigBed.with.input
dragAndDrop subTracks
compositeTrack on
shortLabel ChIP-seq.histoneMarks.bigBed.with.input
longLabel ChIP-Seq - histone marks - narrowPeaks with input
parent ChIP-seq
type bigBed 4
viewLimits 0:80
autoScale on
maxHeightPixels 30
visibility 0
subGroup1 mark mark \
H3K27ac=H3K27ac \
H3K4me3=H3K4me3;
subGroup2 stage stage \
ESC=ESC \
NPC=NPC \
Neuron=Neuron;
subGroup3 view view \
NarrowPeaks=NarrowPeaks;
subGroup4 replicate replicate \
1=1 \
2=2;
sortOrder mark=+ stage=+ view=+ replicate=+
dimensions dimX=mark dimY=stage dimA=replicate dimB=view

track ESCH3K27acX1_peaks.bb
bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/intronic_enhancers_hub/ChIP-Seq.files/with.input/ESCH3K27acX1_peaks.bb
shortLabel "ESCH3K27acX1,NarrowPeaks"
parent ChIP-seq.histoneMarks.bigBed.with.input
color 99,0,57
type bigBed 4
subGroups mark=H3K27ac stage=ESC view=NarrowPeaks replicate=1

track ESCH3K27acX2_peaks.bb
bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/intronic_enhancers_hub/ChIP-Seq.files/with.input/ESCH3K27acX2_peaks.bb
shortLabel "ESCH3K27acX2,NarrowPeaks"
parent ChIP-seq.histoneMarks.bigBed.with.input
color 99,0,57
type bigBed 4
subGroups mark=H3K27ac stage=ESC view=NarrowPeaks replicate=2

track ESCH3K4me3X1_peaks.bb
bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/intronic_enhancers_hub/ChIP-Seq.files/with.input/ESCH3K4me3X1_peaks.bb
shortLabel "ESCH3K4me3X1,NarrowPeaks"
parent ChIP-seq.histoneMarks.bigBed.with.input
color 29,41,118
type bigBed 4
subGroups mark=H3K4me3 stage=ESC view=NarrowPeaks replicate=1

track ESCH3K4me3X2_peaks.bb
bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/intronic_enhancers_hub/ChIP-Seq.files/with.input/ESCH3K4me3X2_peaks.bb
shortLabel "ESCH3K4me3X2,NarrowPeaks"
parent ChIP-seq.histoneMarks.bigBed.with.input
color 29,41,118
type bigBed 4
subGroups mark=H3K4me3 stage=ESC view=NarrowPeaks replicate=2

track NPCH3K27acX1_peaks.bb
bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/intronic_enhancers_hub/ChIP-Seq.files/with.input/NPCH3K27acX1_peaks.bb
shortLabel "NPCH3K27acX1,NarrowPeaks"
parent ChIP-seq.histoneMarks.bigBed.with.input
color 99,0,57
type bigBed 4
subGroups mark=H3K27ac stage=NPC view=NarrowPeaks replicate=1

track NPCH3K27acX2_peaks.bb
bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/intronic_enhancers_hub/ChIP-Seq.files/with.input/NPCH3K27acX2_peaks.bb
shortLabel "NPCH3K27acX2,NarrowPeaks"
parent ChIP-seq.histoneMarks.bigBed.with.input
color 99,0,57
type bigBed 4
subGroups mark=H3K27ac stage=NPC view=NarrowPeaks replicate=2

track NPCH3K4me3X1_peaks.bb
bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/intronic_enhancers_hub/ChIP-Seq.files/with.input/NPCH3K4me3X1_peaks.bb
shortLabel "NPCH3K4me3X1,NarrowPeaks"
parent ChIP-seq.histoneMarks.bigBed.with.input
color 29,41,118
type bigBed 4
subGroups mark=H3K4me3 stage=NPC view=NarrowPeaks replicate=1

track NPCH3K4me3X2_peaks.bb
bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/intronic_enhancers_hub/ChIP-Seq.files/with.input/NPCH3K4me3X2_peaks.bb
shortLabel "NPCH3K4me3X2,NarrowPeaks"
parent ChIP-seq.histoneMarks.bigBed.with.input
color 29,41,118
type bigBed 4
subGroups mark=H3K4me3 stage=NPC view=NarrowPeaks replicate=2

track NeuronH3K27acX1_peaks.bb
bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/intronic_enhancers_hub/ChIP-Seq.files/with.input/NeuronH3K27acX1_peaks.bb
shortLabel "NeuronH3K27acX1,NarrowPeaks"
parent ChIP-seq.histoneMarks.bigBed.with.input
color 99,0,57
type bigBed 4
subGroups mark=H3K27ac stage=Neuron view=NarrowPeaks replicate=1

track NeuronH3K27acX2_peaks.bb
bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/intronic_enhancers_hub/ChIP-Seq.files/with.input/NeuronH3K27acX2_peaks.bb
shortLabel "NeuronH3K27acX2,NarrowPeaks"
parent ChIP-seq.histoneMarks.bigBed.with.input
color 99,0,57
type bigBed 4
subGroups mark=H3K27ac stage=Neuron view=NarrowPeaks replicate=2

track NeuronH3K4me3X1_peaks.bb
bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/intronic_enhancers_hub/ChIP-Seq.files/with.input/NeuronH3K4me3X1_peaks.bb
shortLabel "NeuronH3K4me3X1,NarrowPeaks"
parent ChIP-seq.histoneMarks.bigBed.with.input
color 29,41,118
type bigBed 4
subGroups mark=H3K4me3 stage=Neuron view=NarrowPeaks replicate=1

track NeuronH3K4me3X2_peaks.bb
bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/intronic_enhancers_hub/ChIP-Seq.files/with.input/NeuronH3K4me3X2_peaks.bb
shortLabel "NeuronH3K4me3X2,NarrowPeaks"
parent ChIP-seq.histoneMarks.bigBed.with.input
color 29,41,118
type bigBed 4
subGroups mark=H3K4me3 stage=Neuron view=NarrowPeaks replicate=2