Dashboard of Experiments

Filters Active - 0


ont-Crg-CapTrap_HpreCap_0+_Bra...1
ont-Crg-CapTrap_HpreCap_0+_Hea...1
ont-Crg-Smarter_HpreCap_0+_Bra...1
ont-Crg-Smarter_HpreCap_0+_Hea...1
ont-Crg-Telop_HpreCap_0+_Brain...1
ont-Crg-Telop_HpreCap_0+_Brain...1
ont-Crg-Telop_MpreCap_0+_Brain...1
ont-Crg-Telop_MpreCap_0+_Brain...1
ont-Cshl-CapTrap_HpreCap_0+_Br...1
ont-Cshl-CapTrap_HpreCap_0+_He...1
ont-Cshl-dRNA_HpreCap_0+_Heart...1
ont-Cshl-Smarter_HpreCap_0+_Br...1
ont-Cshl-Smarter_HpreCap_0+_He...1
pacBio-Cshl-CapTrap_HpreCap_0+...1
pacBio-Cshl-CapTrap_HpreCap_0+...1
pacBio-Cshl-Smarter_HpreCap_0+...1
pacBio-Cshl-Smarter_HpreCap_0+...1

Show entries

Search:

sample_name	biosample_id	date sequenced	FASTQ last modified	seq center	seq platform	species	tissue	library prep	reverse transcriptase	capture design	size fraction	cell fraction	capped spike-ins?	bio rep	tech rep	use_matched_HiSeq	subProject	filter_SJ_Qscore	comments	# reads	median read length	mean read length	max read length (FASTQ)	% mapped reads	# HCGM reads	% HCGM reads	% spliced HCGMs	# merged TMs (min. 2 reads)	merge rate	TM median length	TM max length	SIRV Tx Pr	SIRV Tx Sn	% FL TMs	genomic nts covered	# TM nts over intergenic regions	% TM nts over intergenic regions	# TM nts over CDS regions	% TM nts over CDS regions	# TM nts over UTR regions	% TM nts over UTR regions	# TM nts over exons of noncoding transcripts	% TM nts over exons of noncoding transcripts	# TM nts over exons of pseudogenes	% TM nts over exons of pseudogenes	# TM nts over introns	% TM nts over introns	# novel loci	# novel loci per million mapped reads	% novel loci intergenic	# spliced novel loci	% spliced novel loci	# novel loci FL	% novel loci FL	# novel loci on repeats	% novel loci on repeats	median length all TMs (novel loci)	max length all TMs (novel loci)	median length monoexonic TMs (novel loci)	max length monoexonic TMs (novel loci)	median length spliced TMs (novel loci)	max length spliced TMs (novel loci)	# FL novel loci on repeats	% FL novel loci on repeats	median length all TMs (FL novel loci)	max length all TMs (FL novel loci)	median length monoexonic TMs (FL novel loci)	max length monoexonic TMs (FL novel loci)	median length spliced TMs (FL novel loci)	max length spliced TMs (FL novel loci)	# FL spliced novel loci	# FL spliced novel loci per million mapped reads	% FL spliced novel loci
ont-Crg-CapTrap_HpreCap_0+_Brain01Rep1	AM7962_HSaBRAIN_1887911o1966435	2018-09-03	2020-12-05	Crg	ONT	Human	Brain	CapTrap	PrimeScript II	HpreCap	0+	Total	False	1	1	True	GENCODE-BENCHMARK	10	NA	1,912,328	696	816	7,080	100%	807,584	42%	96%	8,138	1.01%	742	3,698	NA	0%	66%	4,722,152	108,381	2%	2,047,692	43%	1,995,994	42%	381,371	8%	49,763	1%	138,951	3%	170	89	44%	107	63%	61	36%	122	72%	471	1,652	443	1,244	488	1,652	43	70%	560	1,652	566	1,119	560	1,652	43	23	70%
ont-Crg-Smarter_HpreCap_0+_Brain01Rep1	CRG_HSaBRAIN_1887911o1966435	2018-05-31	2020-12-09	Crg	ONT	Human	Brain	SMARTer	SMARTScribe	HpreCap	0+	Total	False	1	1	True	GENCODE-BENCHMARK	10	NA	5,538,782	536	654	11,946	92%	3,038,602	60%	22%	32,252	1.06%	598	6,374	36%	62%	20%	19,389,298	1,528,496	8%	3,363,731	17%	10,251,781	53%	1,085,801	6%	93,372	0%	3,066,117	16%	7,860	1,547	29%	158	2%	346	4%	6,687	85%	445	3,666	441	3,666	546	2,653	319	92%	847	3,053	896	3,053	570	1,606	30	6	9%
ont-Crg-Telop_HpreCap_0+_Brain01Rep1	AM7962_HSaBRAIN_1966435	2019-10-01	2020-12-06	Crg	ONT	Human	Brain	Teloprime	E1 RT Lexogen	HpreCap	0+	Total	False	1	1	True	GENCODE-BENCHMARK	10	NA	3,706,978	755	928	13,286	99%	2,154,768	59%	53%	28,053	1.30%	790	5,638	33%	24%	37%	17,926,789	1,456,876	8%	4,116,550	23%	8,717,645	49%	1,534,174	9%	106,694	1%	1,994,850	11%	4,310	1,177	42%	253	6%	202	5%	3,442	80%	495	3,032	481	2,772	652	3,032	143	71%	655	2,087	644	2,087	669	1,818	62	17	31%
ont-Crg-Telop_HpreCap_0+_Brain01Rep2	CRG_CRG0001_MMaBRAIN_20180919	2019-08-21	2020-12-06	Crg	ONT	Human	Brain	Teloprime	E1 RT Lexogen	HpreCap	0+	Total	True	1	2	False	GENCODE-BENCHMARK	10	NA	6,962,176	787	1,039	19,724	99%	3,949,344	57%	49%	56,355	1.43%	857	10,853	20%	62%	40%	32,103,134	4,019,868	13%	6,135,779	19%	13,037,564	41%	3,067,343	10%	241,459	1%	5,601,121	17%	10,377	1,502	41%	1,812	17%	467	5%	8,322	80%	534	2,913	471	2,913	689	2,453	374	80%	716	2,755	716	2,755	716	2,170	274	40	59%
ont-Crg-Telop_MpreCap_0+_Brain01Rep1	CRG_CRG0001_MMaBRAIN_20180919	2019-10-01	2020-12-09	Crg	ONT	Mouse	Brain	Teloprime	E1 RT Lexogen	MpreCap	0+	Total	False	1	1	True	GENCODE-BENCHMARK	10	NA	7,201,050	1,231	1,448	17,423	98%	3,133,979	44%	79%	35,394	1.13%	1,351	11,612	45%	35%	47%	30,670,568	3,514,454	11%	8,917,511	29%	11,960,194	39%	1,820,706	6%	162,313	1%	4,295,390	14%	4,404	621	53%	294	7%	430	10%	3,668	83%	857	4,614	832	4,614	1,119	4,381	318	74%	986	4,575	1,006	4,575	902	4,381	107	15	25%
ont-Crg-Telop_MpreCap_0+_Brain01Rep2	AM7962_HSaBRAIN_1966435	2019-08-21	2020-12-08	Crg	ONT	Mouse	Brain	Teloprime	E1 RT Lexogen	MpreCap	0+	Total	True	1	2	False	GENCODE-BENCHMARK	10	NA	8,271,595	1,391	1,550	18,074	99%	4,226,605	52%	80%	69,819	1.65%	1,467	16,293	31%	57%	55%	45,723,432	7,425,058	16%	11,615,039	25%	14,786,010	32%	3,073,518	7%	238,648	1%	8,585,159	19%	8,272	1,008	49%	2,753	33%	664	8%	6,997	85%	973	4,580	928	4,580	1,043	3,723	527	79%	1,027	5,317	1,088	5,317	991	3,047	308	38	46%
ont-Cshl-CapTrap_HpreCap_0+_Brain01Rep1	AM7962_HSaBRAIN_1887911o1966435	2018-09-03	2020-12-16	Cshl	ONT	Human	Brain	CapTrap	PrimeScript II	HpreCap	0+	Total	False	1	1	True	GENCODE-BENCHMARK	10	NA	7,587,555	721	860	15,576	99%	4,203,328	56%	96%	20,778	0.49%	809	4,459	NA	0%	60%	11,137,624	422,901	4%	4,368,284	39%	4,498,008	40%	1,058,845	10%	104,250	1%	685,336	6%	749	100	46%	319	43%	196	26%	545	73%	522	2,540	492	2,540	556	1,880	141	72%	633	1,923	640	1,923	622	1,880	90	12	46%
ont-Cshl-Smarter_HpreCap_0+_Brain01Rep1	AM7962_HSaBRAIN_1887911o1966435	2018-09-03	2020-12-16	Cshl	ONT	Human	Brain	SMARTer	SMARTScribe	HpreCap	0+	Total	False	1	1	True	GENCODE-BENCHMARK	10	NA	6,576,840	622	761	10,031	91%	3,578,762	60%	26%	36,092	1.01%	738	6,369	35%	62%	23%	25,189,028	2,148,279	9%	4,529,569	18%	12,077,192	48%	1,396,993	6%	106,275	0%	4,930,720	20%	9,483	1,582	27%	206	2%	515	5%	8,271	87%	584	4,447	582	4,447	660	3,019	489	95%	986	3,711	1,022	3,711	662	3,019	43	7	8%
pacBio-Cshl-CapTrap_HpreCap_0+_Brain01Rep1	AM7962_HSaBRAIN_1887911o1966435	2018-09-03	2019-02-14	Cshl	pacBioSI	Human	Brain	CapTrap	PrimeScript II	HpreCap	0+	Total	False	1	1	True	GENCODE-BENCHMARK	10	NA	570,433	946	1,103	12,260	100%	512,170	90%	97%	7,697	1.50%	1,095	4,003	NA	0%	80%	6,311,354	83,851	1%	3,177,406	50%	2,564,162	41%	331,452	5%	26,201	0%	128,282	2%	81	142	51%	44	54%	33	41%	57	70%	668	2,540	749	2,540	628	1,659	22	67%	694	1,659	790	1,509	646	1,659	17	30	52%
pacBio-Cshl-Smarter_HpreCap_0+_Brain01Rep1	AM7962_HSaBRAIN_1887911o1966435	2018-09-03	2019-02-15	Cshl	pacBioSI	Human	Brain	SMARTer	SMARTScribe	HpreCap	0+	Total	False	1	1	True	GENCODE-BENCHMARK	10	NA	502,020	1,146	1,286	11,066	100%	424,764	85%	46%	9,926	2.34%	1,140	5,028	79%	71%	45%	10,347,279	481,389	5%	2,863,051	28%	5,537,785	54%	420,895	4%	24,585	0%	1,019,574	10%	1,178	2,354	30%	36	3%	146	12%	1,122	95%	1,037	4,121	1,039	4,121	916	2,059	139	95%	1,281	3,048	1,287	3,048	976	1,315	6	12	4%
ont-Crg-CapTrap_HpreCap_0+_Heart01Rep1	AM7966_HSaHEART_1866106	2018-10-05	2020-12-04	Crg	ONT	Human	Heart	CapTrap	PrimeScript II	HpreCap	0+	Total	False	1	1	True	GENCODE-BENCHMARK	10	NA	295,021	700	794	6,065	100%	126,210	43%	96%	2,224	1.76%	677	3,099	NA	0%	74%	1,384,329	16,659	1%	704,966	51%	566,482	41%	60,225	4%	14,458	1%	21,539	2%	31	105	52%	26	84%	6	19%	27	87%	433	1,864	366	767	442	1,864	4	67%	366	724	338	366	499	724	4	14	67%
ont-Crg-Smarter_HpreCap_0+_Heart01Rep1	AM7966_HSaHEART_1866106	2019-04-10	2020-12-14	Crg	ONT	Human	Heart	SMARTer	SMARTScribe	HpreCap	0+	Total	False	1	1	True	GENCODE-BENCHMARK	10	NA	412,734	818	960	24,073	91%	158,564	42%	24%	4,259	2.69%	530	4,101	42%	34%	32%	2,461,871	71,413	3%	417,572	17%	1,768,418	72%	87,395	4%	19,689	1%	97,384	4%	242	641	42%	10	4%	30	12%	203	84%	474	2,495	470	2,495	652	954	26	87%	864	1,760	953	1,760	409	747	3	8	10%
ont-Cshl-CapTrap_HpreCap_0+_Heart01Rep1	AM7966_HSaHEART_1866106	2018-09-03	2020-12-16	Cshl	ONT	Human	Heart	CapTrap	PrimeScript II	HpreCap	0+	Total	False	1	1	True	GENCODE-BENCHMARK	10	NA	6,103,458	853	932	12,715	99%	3,419,924	57%	97%	15,127	0.44%	880	4,573	NA	0%	66%	9,428,314	258,524	3%	4,084,937	43%	4,016,477	43%	595,056	6%	74,930	1%	398,390	4%	371	61	46%	235	63%	93	25%	292	79%	554	3,286	506	2,011	578	3,286	74	80%	626	3,286	638	1,123	589	3,286	68	11	73%
ont-Cshl-dRNA_HpreCap_0+_Heart01Rep1	AM7966_HSaHEART_1866106	2018-09-03	2020-12-05	Cshl	ONT	Human	Heart	directRNA	None	HpreCap	0+	Total	False	1	1	True	GENCODE-BENCHMARK	10	NA	685,718	515	618	5,998	93%	154,264	24%	98%	2,310	1.50%	781	3,551	51%	43%	16%	1,819,589	7,498	0%	1,010,590	56%	734,063	40%	54,120	3%	3,510	0%	9,808	1%	18	28	50%	13	72%	5	28%	9	50%	429	944	352	498	474	944	1	20%	352	498	352	498	NA	NA	0	0	0%
ont-Cshl-Smarter_HpreCap_0+_Heart01Rep1	AM7966_HSaHEART_1866106	2018-09-03	2020-12-07	Cshl	ONT	Human	Heart	SMARTer	SMARTScribe	HpreCap	0+	Total	False	1	1	True	GENCODE-BENCHMARK	10	NA	5,219,754	617	736	10,010	94%	3,031,187	62%	38%	24,121	0.80%	709	6,368	39%	60%	30%	15,182,663	871,531	6%	3,637,243	24%	8,415,078	55%	727,066	5%	90,667	1%	1,441,078	9%	3,438	704	31%	164	5%	221	6%	2,851	83%	533	4,456	529	4,456	588	2,997	196	89%	802	3,049	836	3,049	686	2,997	38	8	17%
pacBio-Cshl-CapTrap_HpreCap_0+_Heart01Rep1	AM7966_HSaHEART_1866106	2018-09-03	2019-02-14	Cshl	pacBioSI	Human	Heart	CapTrap	PrimeScript II	HpreCap	0+	Total	False	1	1	True	GENCODE-BENCHMARK	10	NA	463,193	998	1,142	8,715	100%	428,064	92%	98%	5,841	1.36%	1,215	5,009	NA	0%	85%	5,744,226	59,753	1%	3,055,133	53%	2,360,964	41%	163,368	3%	16,456	0%	88,552	2%	51	110	61%	39	76%	18	35%	40	78%	827	2,181	807	1,062	827	2,181	16	89%	894	2,181	830	1,062	1,041	2,181	13	28	72%
pacBio-Cshl-Smarter_HpreCap_0+_Heart01Rep1	AM7966_HSaHEART_1866106	2018-09-03	2019-02-14	Cshl	pacBioSI	Human	Heart	SMARTer	SMARTScribe	HpreCap	0+	Total	False	1	1	True	GENCODE-BENCHMARK	10	NA	503,212	1,065	1,195	11,417	100%	459,643	91%	62%	8,553	1.86%	1,132	5,525	75%	65%	56%	8,416,045	260,961	3%	3,071,388	36%	4,366,659	52%	266,122	3%	19,885	0%	431,030	5%	542	1,079	35%	36	7%	78	14%	520	96%	1,022	4,427	1,022	4,427	1,085	3,099	74	95%	1,162	3,099	1,132	2,535	1,541	3,099	9	18	12%

Showing 1 to 17 of 17 entries