| pacBioSII-pacBio-IsoSeq_HpreCa...1 |
| pacBioSII1 |
| Human1 |
| AlzhBrain1 |
| IsoSeq1 |
| NA1 |
| HpreCap1 |
| 0+1 |
| Total1 |
| False1 |
| False1 |
| Other1 |
| sample_name | biosample_id | date sequenced | FASTQ last modified | seq center | seq platform | species | tissue | library prep | reverse transcriptase | capture design | size fraction | cell fraction | capped spike-ins? | bio rep | tech rep | use_matched_HiSeq | subProject | filter_SJ_Qscore | comments | # reads | median read length | mean read length | max read length (FASTQ) | % mapped reads | # HCGM reads | % HCGM reads | % spliced HCGMs | # merged TMs (min. 2 reads) | merge rate | TM median length | TM max length | SIRV Tx Pr | SIRV Tx Sn | % FL TMs | genomic nts covered | # TM nts over intergenic regions | % TM nts over intergenic regions | # TM nts over CDS regions | % TM nts over CDS regions | # TM nts over UTR regions | % TM nts over UTR regions | # TM nts over exons of noncoding transcripts | % TM nts over exons of noncoding transcripts | # TM nts over exons of pseudogenes | % TM nts over exons of pseudogenes | # TM nts over introns | % TM nts over introns | # novel loci | # novel loci per million mapped reads | % novel loci intergenic | # spliced novel loci | % spliced novel loci | # novel loci FL | % novel loci FL | # novel loci on repeats | % novel loci on repeats | median length all TMs (novel loci) | max length all TMs (novel loci) | median length monoexonic TMs (novel loci) | max length monoexonic TMs (novel loci) | median length spliced TMs (novel loci) | max length spliced TMs (novel loci) | # FL novel loci on repeats | % FL novel loci on repeats | median length all TMs (FL novel loci) | max length all TMs (FL novel loci) | median length monoexonic TMs (FL novel loci) | max length monoexonic TMs (FL novel loci) | median length spliced TMs (FL novel loci) | max length spliced TMs (FL novel loci) | # FL spliced novel loci | # FL spliced novel loci per million mapped reads | % FL spliced novel loci |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| pacBioSII-pacBio-IsoSeq_HpreCap_0+_AlzhBrain | NA | 2018-09-03 | 2021-07-26 | pacBio | pacBioSII | Human | AlzhBrain | IsoSeq | NA | HpreCap | 0+ | Total | False | 1 | 1 | False | Other | 30 | NA | 3,508,299 | 2,686 | 2,955 | 16,488 | 100% | 2,613,525 | 75% | 74% | 111,206 | 4.26% | 3,305 | 17,900 | NA | 0% | 46% | 173,846,564 | 16,191,728 | 9% | 23,899,198 | 14% | 26,538,871 | 15% | 10,704,140 | 6% | 839,806 | 0% | 95,672,821 | 55% | 18,181 | 5,186 | 17% | 2,607 | 14% | 185 | 1% | 17,986 | 99% | 3,016 | 16,985 | 3,059 | 16,985 | 2,816 | 8,972 | 181 | 98% | 3,006 | 9,123 | 2,956 | 9,123 | 3,032 | 6,319 | 65 | 19 | 35% |