Information for 9-YGAGGGWCAGTGGM (Motif 12)

A G C T A C T G C G T A A C T G A C T G A C T G C G T A A G T C C G T A A C T G A C G T A C T G C T A G T G A C
Reverse Opposite:
A C G T A G T C A G T C C G T A A G T C A C G T A C T G C G A T A G T C A G T C G T A C A C G T A G T C C T G A
p-value:1e-13
log p-value:-3.080e+01
Information Content per bp:1.895
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif0.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets106.3 +/- 49.0bp
Average Position of motif in Background137.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PBX3/MA1114.1/Jaspar

Match Rank:1
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---YGAGGGWCAGTGGM
GGGTGAGTGACAGGCGG
A C G T A C G T A C G T A G C T A C T G C G T A A C T G A C T G A C T G C G T A A G T C C G T A A C T G A C G T A C T G C T A G T G A C
T A C G A C T G A C T G C G A T T C A G C G T A A C T G C A G T T A C G C T G A T A G C C T G A A C T G T A C G A T G C T C A G A T C G

PKNOX1/MA0782.2/Jaspar

Match Rank:2
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--YGAGGGWCAGTGGM
TTTGAGTGACAGCTA-
A C G T A C G T A G C T A C T G C G T A A C T G A C T G A C T G C G T A A G T C C G T A A C T G A C G T A C T G C T A G T G A C
C G A T G C A T C G A T T C A G C T G A A C T G C G A T A T C G C T G A G A T C C G T A A C T G T A G C A G C T C T G A A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-YGAGGGWCAGTGGM
NTGATTGACAGN---
A C G T A G C T A C T G C G T A A C T G A C T G A C T G C G T A A G T C C G T A A C T G A C G T A C T G C T A G T G A C
A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G A C G T A C G T A C G T

Hr46/dmmpmm(Bergman)/fly

Match Rank:4
Score:0.62
Offset:3
Orientation:forward strand
Alignment:YGAGGGWCAGTGGM
---GGGTCA-----
A G C T A C T G C G T A A C T G A C T G A C T G C G T A A G T C C G T A A C T G A C G T A C T G C T A G T G A C
A C G T A C G T A C G T A C T G A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T

AT1G36060/MA1263.1/Jaspar

Match Rank:5
Score:0.62
Offset:2
Orientation:forward strand
Alignment:YGAGGGWCAGTGGM--
--ATGGTCGGTGGAGG
A G C T A C T G C G T A A C T G A C T G A C T G C G T A A G T C C G T A A C T G A C G T A C T G C T A G T G A C A C G T A C G T
A C G T A C G T C G T A C A G T C A T G A C T G C A G T A G T C A C T G A C T G A G C T A C T G T C A G G T C A C A T G C T A G

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:6
Score:0.61
Offset:3
Orientation:forward strand
Alignment:YGAGGGWCAGTGGM---
---AGGTCANTGACCTN
A G C T A C T G C G T A A C T G A C T G A C T G C G T A A G T C C G T A A C T G A C G T A C T G C T A G T G A C A C G T A C G T A C G T
A C G T A C G T A C G T T C G A C A T G C A T G A C G T A T G C T C G A C T G A A G C T T A C G T G C A G T A C G A T C A G C T A G T C

SIZF2/MA1405.1/Jaspar

Match Rank:7
Score:0.61
Offset:1
Orientation:forward strand
Alignment:YGAGGGWCAGTGGM
-GACTGACAGT---
A G C T A C T G C G T A A C T G A C T G A C T G C G T A A G T C C G T A A C T G A C G T A C T G C T A G T G A C
A C G T A C T G C T G A A T G C C G A T T C A G C G T A A G T C G C T A T A C G G A C T A C G T A C G T A C G T

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:8
Score:0.61
Offset:1
Orientation:forward strand
Alignment:YGAGGGWCAGTGGM---
-GTAGGTCACTGGGTCA
A G C T A C T G C G T A A C T G A C T G A C T G C G T A A G T C C G T A A C T G A C G T A C T G C T A G T G A C A C G T A C G T A C G T
A C G T A T C G A G C T C T G A C T A G A C T G A C G T G T A C G C T A A T G C A C G T C T A G C A T G T A C G C G A T A T G C C G T A

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:9
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-YGAGGGWCAGTGGM
BTGABTGACAGS---
A C G T A G C T A C T G C G T A A C T G A C T G A C T G C G T A A G T C C G T A A C T G A C G T A C T G C T A G T G A C
A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C A C G T A C G T A C G T

ERF017/MA1234.1/Jaspar

Match Rank:10
Score:0.60
Offset:2
Orientation:forward strand
Alignment:YGAGGGWCAGTGGM--
--ATGGACGGTGGAGG
A G C T A C T G C G T A A C T G A C T G A C T G C G T A A G T C C G T A A C T G A C G T A C T G C T A G T G A C A C G T A C G T
A C G T A C G T C T G A C G A T C A T G A C T G G C T A A G T C A C T G A C T G G A C T C A T G T C A G G C T A C T A G C T A G