Information for 12-CGGCTTCACC (Motif 12)

T G A C C T A G A C T G A G T C A C G T A G C T A G T C C G T A G A T C A G T C
Reverse Opposite:
A C T G C A T G A C G T A C T G C T G A G T C A C T A G A G T C A G T C A C T G
p-value:1e-10
log p-value:-2.325e+01
Information Content per bp:1.848
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif4.78%
Number of Background Sequences with motif198.7
Percentage of Background Sequences with motif0.44%
Average Position of motif in Targets118.1 +/- 38.6bp
Average Position of motif in Background94.6 +/- 73.0bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

che-1/MA0260.1/Jaspar

Match Rank:1
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:CGGCTTCACC
-GGTTTC---
T G A C C T A G A C T G A G T C A C G T A G C T A G T C C G T A G A T C A G T C
A C G T A T C G A C T G A G C T A C G T A C G T A G T C A C G T A C G T A C G T

MA0260.1_che-1/Jaspar

Match Rank:2
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:CGGCTTCACC
-GGTTTC---
T G A C C T A G A C T G A G T C A C G T A G C T A G T C C G T A G A T C A G T C
A C G T A T C G A C T G A G C T A C G T A C G T A G T C A C G T A C G T A C G T

GCR1/Literature(Harbison)/Yeast

Match Rank:3
Score:0.72
Offset:1
Orientation:forward strand
Alignment:CGGCTTCACC
-GGCTTCCAC
T G A C C T A G A C T G A G T C A C G T A G C T A G T C C G T A G A T C A G T C
A C G T A C T G A C T G A G T C A C G T A C G T A G T C A G T C C G A T A G T C

Foxn1/MA1684.1/Jaspar

Match Rank:4
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CGGCTTCACC
--GCGTCC--
T G A C C T A G A C T G A G T C A C G T A G C T A G T C C G T A G A T C A G T C
A C G T A C G T A C T G A G T C A C T G A C G T A G T C G A T C A C G T A C G T

AGL55/MA1202.1/Jaspar

Match Rank:5
Score:0.65
Offset:5
Orientation:forward strand
Alignment:CGGCTTCACC-
-----TCACCA
T G A C C T A G A C T G A G T C A C G T A G C T A G T C C G T A G A T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A G C T A G T C C G T A A G T C A G T C C G T A

ASHR1(ND)/col-ASHR1-DAP-Seq(GSE60143)/Homer

Match Rank:6
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:CGGCTTCACC--
----NTCACCAN
T G A C C T A G A C T G A G T C A C G T A G C T A G T C C G T A G A T C A G T C A C G T A C G T
A C G T A C G T A C G T A C G T T C A G C G A T G T A C C G T A T A G C G T A C G C T A G A C T

POL008.1_DCE_S_I/Jaspar

Match Rank:7
Score:0.64
Offset:2
Orientation:forward strand
Alignment:CGGCTTCACC
--GCTTCC--
T G A C C T A G A C T G A G T C A C G T A G C T A G T C C G T A G A T C A G T C
A C G T A C G T A C T G A T G C A G C T A C G T A T G C A T G C A C G T A C G T

ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer

Match Rank:8
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---CGGCTTCACC--
TGCCTGCGYCMCCTT
A C G T A C G T A C G T T G A C C T A G A C T G A G T C A C G T A G C T A G T C C G T A G A T C A G T C A C G T A C G T
C A G T A C T G A G T C A G T C A C G T A C T G A T G C C T A G A G T C G A T C G T C A A G T C A G T C G C A T A C G T

Tb_0251(RRM)/Trypanosoma_brucei-RNCMPT00251-PBM/HughesRNA

Match Rank:9
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CGGCTTCACC
---ATTCACA
T G A C C T A G A C T G A G T C A C G T A G C T A G T C C G T A G A T C A G T C
A C G T A C G T A C G T G C T A C G A T A C G T A G T C C G T A A G T C C T G A

GCR1(MacIsaac)/Yeast

Match Rank:10
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CGGCTTCACC
GGGCTTCCA-
T G A C C T A G A C T G A G T C A C G T A G C T A G T C C G T A G A T C A G T C
A T C G A C T G C T A G G T A C G C A T A C G T A G T C A G T C G C T A A C G T