Information for 19-GGAACATCAG (Motif 17)

A C T G A C T G C G T A C G T A A G T C C G T A A C G T A G T C C G T A A T C G
Reverse Opposite:
A T G C A C G T A C T G C G T A A C G T C T A G A C G T A C G T A G T C A G T C
p-value:1e-7
log p-value:-1.668e+01
Information Content per bp:1.929
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif2.08%
Number of Background Sequences with motif62.2
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets97.6 +/- 24.5bp
Average Position of motif in Background98.3 +/- 65.9bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YBX1(CSD)/Homo_sapiens-RNCMPT00083-PBM/HughesRNA

Match Rank:1
Score:0.80
Offset:2
Orientation:forward strand
Alignment:GGAACATCAG
--AACATCA-
A C T G A C T G C G T A C G T A A G T C C G T A A C G T A G T C C G T A A T C G
A C G T A C G T C G T A G T C A A G T C C G T A G A C T A G T C C G T A A C G T

YBX1(CSD)/Homo_sapiens-RNCMPT00116-PBM/HughesRNA

Match Rank:2
Score:0.80
Offset:2
Orientation:forward strand
Alignment:GGAACATCAG
--AACATCA-
A C T G A C T G C G T A C G T A A G T C C G T A A C G T A G T C C G T A A T C G
A C G T A C G T C G T A G T C A A G T C C G T A A G C T A G T C C T G A A C G T

YBX2(CSD)/Homo_sapiens-RNCMPT00084-PBM/HughesRNA

Match Rank:3
Score:0.72
Offset:2
Orientation:forward strand
Alignment:GGAACATCAG
--AACAACN-
A C T G A C T G C G T A C G T A A G T C C G T A A C G T A G T C C G T A A T C G
A C G T A C G T C T G A C T G A A T G C C G T A C G T A A G T C C G T A A C G T

ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:4
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-GGAACATCAG
TGGAACAGMA-
A C G T A C T G A C T G C G T A C G T A A G T C C G T A A C G T A G T C C G T A A T C G
C A G T A C T G T C A G T G C A G C T A A T G C T C G A A T C G G T C A T G C A A C G T

dl/dmmpmm(SeSiMCMC)/fly

Match Rank:5
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:GGAACATCAG
GGAAAATCC-
A C T G A C T G C G T A C G T A A G T C C G T A A C G T A G T C C G T A A T C G
C T A G C T A G C T G A G T C A G C T A C G T A A G C T G T A C T G A C A C G T

ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer

Match Rank:6
Score:0.69
Offset:0
Orientation:forward strand
Alignment:GGAACATCAG
GGAACAGCCG
A C T G A C T G C G T A C G T A A G T C C G T A A C G T A G T C C G T A A T C G
C T A G A C T G T G C A G T C A A T G C C G T A A T C G A T G C A G T C C T A G

ZNF341/MA1655.1/Jaspar

Match Rank:7
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GGAACATCAG-
GGGAACAGCCAC
A C G T A C T G A C T G C G T A C G T A A G T C C G T A A C G T A G T C C G T A A T C G A C G T
C A T G C T A G T A C G T G C A C T G A A T G C T C G A A T C G A T G C G T A C T C G A T A G C

TaMYB80(MYB)/Triticum aestivum/AthaMap

Match Rank:8
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GGAACATCAG
GGGAATATCCC
A C G T A C T G A C T G C G T A C G T A A G T C C G T A A C G T A G T C C G T A A T C G
A T C G T A C G A C T G C G T A C G T A A C G T C G T A A C G T T A G C G T A C A T C G

NFATC1/MA0624.1/Jaspar

Match Rank:9
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---GGAACATCAG
NNTGGAAANN---
A C G T A C G T A C G T A C T G A C T G C G T A C G T A A G T C C G T A A C G T A G T C C G T A A T C G
C G T A C T G A G A C T C T A G A C T G C T G A C T G A G C T A C G T A G C A T A C G T A C G T A C G T

HSF1/MA0319.1/Jaspar

Match Rank:10
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GGAACATCAG
ATGGAACA----
A C G T A C G T A C T G A C T G C G T A C G T A A G T C C G T A A C G T A G T C C G T A A T C G
T C G A A C G T C T A G A C T G C G T A C G T A A G T C C T G A A C G T A C G T A C G T A C G T