Information for 7-GGAGGATGAT (Motif 4)

C A T G T C A G G C T A T C A G T C A G T C G A A G C T A T C G C T G A C G A T
Reverse Opposite:
G C T A G A C T T A G C T C G A A G C T A G T C A G T C C G A T A G T C G T A C
p-value:1e-8
log p-value:-1.980e+01
Information Content per bp:1.656
Number of Target Sequences with motif51.0
Percentage of Target Sequences with motif20.90%
Number of Background Sequences with motif4004.0
Percentage of Background Sequences with motif8.59%
Average Position of motif in Targets68.7 +/- 49.1bp
Average Position of motif in Background98.6 +/- 70.1bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.16
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

G3BP2(RRM)/Homo_sapiens-RNCMPT00021-PBM/HughesRNA

Match Rank:1
Score:0.78
Offset:2
Orientation:forward strand
Alignment:GGAGGATGAT
--AGGATGA-
C A T G T C A G G C T A T C A G T C A G T C G A A G C T A T C G C T G A C G A T
A C G T A C G T C G T A A C T G A C T G C G T A A C G T C T A G C T G A A C G T

RBM47(RRM)/Gallus_gallus-RNCMPT00279-PBM/HughesRNA

Match Rank:2
Score:0.76
Offset:4
Orientation:forward strand
Alignment:GGAGGATGAT-
----GATGATN
C A T G T C A G G C T A T C A G T C A G T C G A A G C T A T C G C T G A C G A T A C G T
A C G T A C G T A C G T A C G T A C T G C G T A A C G T A T C G C G T A C G A T C G A T

ZML2(C2C2gata)/col-ZML2-DAP-Seq(GSE60143)/Homer

Match Rank:3
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:GGAGGATGAT-
-GATGATGATG
C A T G T C A G G C T A T C A G T C A G T C G A A G C T A T C G C T G A C G A T A C G T
A C G T C T A G C T G A C G A T T C A G C T G A C A G T A T C G C T G A C A G T A T C G

Rbm47(RRM)/Xenopus_tropicalis-RNCMPT00280-PBM/HughesRNA

Match Rank:4
Score:0.76
Offset:4
Orientation:forward strand
Alignment:GGAGGATGAT-
----GATGATN
C A T G T C A G G C T A T C A G T C A G T C G A A G C T A T C G C T G A C G A T A C G T
A C G T A C G T A C G T A C G T A C T G C G T A A C G T A T C G C G T A C G A T G A C T

SF2(RRM)/Drosophila_melanogaster-RNCMPT00066-PBM/HughesRNA

Match Rank:5
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-GGAGGATGAT
NGGAGGA----
A C G T C A T G T C A G G C T A T C A G T C A G T C G A A G C T A T C G C T G A C G A T
C T G A A C T G C T A G G C T A A C T G A C T G C T G A A C G T A C G T A C G T A C G T

RIN(RRM)/Drosophila_melanogaster-RNCMPT00138-PBM/HughesRNA

Match Rank:6
Score:0.75
Offset:3
Orientation:forward strand
Alignment:GGAGGATGAT-
---AGATGATG
C A T G T C A G G C T A T C A G T C A G T C G A A G C T A T C G C T G A C G A T A C G T
A C G T A C G T A C G T C T G A C T A G C G T A A C G T A C T G C T G A G C A T C T A G

SRSF1(RRM)/Homo_sapiens-RNCMPT00107-PBM/HughesRNA

Match Rank:7
Score:0.74
Offset:0
Orientation:forward strand
Alignment:GGAGGATGAT
GGAGGAN---
C A T G T C A G G C T A T C A G T C A G T C G A A G C T A T C G C T G A C G A T
A C T G C T A G C G T A A C T G A C T G C T G A T G C A A C G T A C G T A C G T

NCU02404(RRM)/Neurospora_crassa-RNCMPT00238-PBM/HughesRNA

Match Rank:8
Score:0.74
Offset:0
Orientation:forward strand
Alignment:GGAGGATGAT
GGAGGAA---
C A T G T C A G G C T A T C A G T C A G T C G A A G C T A T C G C T G A C G A T
A C T G A C T G C G T A A C T G A C T G C G T A C T G A A C G T A C G T A C G T

SRSF1(RRM)/Homo_sapiens-RNCMPT00106-PBM/HughesRNA

Match Rank:9
Score:0.73
Offset:0
Orientation:forward strand
Alignment:GGAGGATGAT
GGAGGAN---
C A T G T C A G G C T A T C A G T C A G T C G A A G C T A T C G C T G A C G A T
A C T G C T A G C G T A A C T G A C T G C T G A T G A C A C G T A C G T A C G T

PF10_0068(RRM)/Plasmodium_falciparum-RNCMPT00199-PBM/HughesRNA

Match Rank:10
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-GGAGGATGAT
NGGAGGAA---
A C G T C A T G T C A G G C T A T C A G T C A G T C G A A G C T A T C G C T G A C G A T
C G A T A C T G A C T G C G T A A C T G A C T G C G T A C T G A A C G T A C G T A C G T