Information for 4-AAAAAAAAMACA (Motif 3)

C T G A T C G A G T C A G C T A G T C A T C G A T G C A T C G A T G A C C G T A G T A C C G T A
Reverse Opposite:
C G A T C A T G C G A T A C T G A G C T A C G T A G C T C A G T C G A T C A G T A G C T G A C T
p-value:1e-40
log p-value:-9.233e+01
Information Content per bp:1.661
Number of Target Sequences with motif407.0
Percentage of Target Sequences with motif23.76%
Number of Background Sequences with motif5560.1
Percentage of Background Sequences with motif12.08%
Average Position of motif in Targets86.0 +/- 72.0bp
Average Position of motif in Background101.2 +/- 61.4bp
Strand Bias (log2 ratio + to - strand density)-1.8
Multiplicity (# of sites on avg that occur together)1.16
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

VRN1(ABI3VP1)/col-VRN1-DAP-Seq(GSE60143)/Homer

Match Rank:1
Score:0.81
Offset:2
Orientation:reverse strand
Alignment:AAAAAAAAMACA
--AAAAAAAAAA
C T G A T C G A G T C A G C T A G T C A T C G A T G C A T C G A T G A C C G T A G T A C C G T A
A C G T A C G T C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A

SeqBias: polyA-repeat

Match Rank:2
Score:0.81
Offset:2
Orientation:forward strand
Alignment:AAAAAAAAMACA
--AAAAAAAAAA
C T G A T C G A G T C A G C T A G T C A T C G A T G C A T C G A T G A C C G T A G T A C C G T A
A C G T A C G T C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A

hb/dmmpmm(Noyes)/fly

Match Rank:3
Score:0.76
Offset:0
Orientation:forward strand
Alignment:AAAAAAAAMACA
ACNAAAAAAACA
C T G A T C G A G T C A G C T A G T C A T C G A T G C A T C G A T G A C C G T A G T A C C G T A
G T C A T G A C T G A C T G C A C T G A C T G A G T C A T G C A C G T A G C T A A G T C C T G A

ZNF384/MA1125.1/Jaspar

Match Rank:4
Score:0.76
Offset:-2
Orientation:forward strand
Alignment:--AAAAAAAAMACA
TTTAAAAAAAAA--
A C G T A C G T C T G A T C G A G T C A G C T A G T C A T C G A T G C A T C G A T G A C C G T A G T A C C G T A
C G A T G C A T C G A T G T C A C G T A G C T A C G T A C G T A G C T A G C T A G C T A G C T A A C G T A C G T

PB0182.1_Srf_2/Jaspar

Match Rank:5
Score:0.75
Offset:-3
Orientation:forward strand
Alignment:---AAAAAAAAMACA--
GTTAAAAAAAAAAATTA
A C G T A C G T A C G T C T G A T C G A G T C A G C T A G T C A T C G A T G C A T C G A T G A C C G T A G T A C C G T A A C G T A C G T
T A C G A C G T C G A T C G T A C T G A C T G A T G C A T G C A G T C A G C T A G T C A G T C A G T C A T G C A A C G T G C A T G C A T

IGF2BP3(KH,RRM)/Homo_sapiens-RNCMPT00172-PBM/HughesRNA

Match Rank:6
Score:0.73
Offset:5
Orientation:forward strand
Alignment:AAAAAAAAMACA
-----ACANACA
C T G A T C G A G T C A G C T A G T C A T C G A T G C A T C G A T G A C C G T A G T A C C G T A
A C G T A C G T A C G T A C G T A C G T G T C A G T A C G C T A G C T A G C T A G T A C G T C A

ARET(RRM)/Drosophila_melanogaster-RNCMPT00114-PBM/HughesRNA

Match Rank:7
Score:0.73
Offset:4
Orientation:reverse strand
Alignment:AAAAAAAAMACA
----AACACACA
C T G A T C G A G T C A G C T A G T C A T C G A T G C A T C G A T G A C C G T A G T A C C G T A
A C G T A C G T A C G T A C G T G T C A G T C A G T A C C G T A G T A C G T C A G T A C C G T A

BRUNOL5(RRM)/Homo_sapiens-RNCMPT00166-PBM/HughesRNA

Match Rank:8
Score:0.73
Offset:5
Orientation:reverse strand
Alignment:AAAAAAAAMACA
-----ACACACA
C T G A T C G A G T C A G C T A G T C A T C G A T G C A T C G A T G A C C G T A G T A C C G T A
A C G T A C G T A C G T A C G T A C G T G T C A G T A C G T C A G T A C C G T A G T A C C G T A

PAPI(KH)/Drosophila_melanogaster-RNCMPT00011-PBM/HughesRNA

Match Rank:9
Score:0.73
Offset:5
Orientation:reverse strand
Alignment:AAAAAAAAMACA
-----ACACACA
C T G A T C G A G T C A G C T A G T C A T C G A T G C A T C G A T G A C C G T A G T A C C G T A
A C G T A C G T A C G T A C G T A C G T G T C A G T A C C G T A G T A C C G T A G T A C G T C A

RLR1?/SacCer-Promoters/Homer

Match Rank:10
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:AAAAAAAAMACA-
-AAAARRGAAAAW
C T G A T C G A G T C A G C T A G T C A T C G A T G C A T C G A T G A C C G T A G T A C C G T A A C G T
A C G T C T G A C G T A C G T A T C G A C T G A C T G A C T A G C T G A C G T A G T C A C G T A C G A T