Information for 2-TGAAGA (Motif 2)

A C G T A C T G C T G A C T G A A C T G C T G A
Reverse Opposite:
A G C T A G T C A G C T A G C T A G T C C G T A
p-value:1e-43
log p-value:-9.926e+01
Information Content per bp:1.873
Number of Target Sequences with motif1009.0
Percentage of Target Sequences with motif67.09%
Number of Background Sequences with motif23017.7
Percentage of Background Sequences with motif49.38%
Average Position of motif in Targets99.6 +/- 49.9bp
Average Position of motif in Background99.4 +/- 70.1bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.57
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL008.1_DCE_S_I/Jaspar

Match Rank:1
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:TGAAGA
NGAAGC
A C G T A C T G C T G A C T G A A C T G C T G A
T A C G T A C G T G C A T C G A T A C G T G A C

TRA2(RRM)/Drosophila_melanogaster-RNCMPT00078-PBM/HughesRNA

Match Rank:2
Score:0.71
Offset:1
Orientation:forward strand
Alignment:TGAAGA--
-GAAGAAG
A C G T A C T G C T G A C T G A A C T G C T G A A C G T A C G T
A C G T T C A G C G T A C T G A A T C G C G T A C G T A A T C G

ZML2(C2C2gata)/col-ZML2-DAP-Seq(GSE60143)/Homer

Match Rank:3
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--TGAAGA--
GATGATGATG
A C G T A C G T A C G T A C T G C T G A C T G A A C T G C T G A A C G T A C G T
C T A G C T G A C G A T T C A G C T G A C A G T A T C G C T G A C A G T A T C G

REF2(RRM)/Drosophila_melanogaster-RNCMPT00059-PBM/HughesRNA

Match Rank:4
Score:0.66
Offset:0
Orientation:forward strand
Alignment:TGAAGA-
AGAAGGC
A C G T A C T G C T G A C T G A A C T G C T G A A C G T
C G T A A C T G C G T A C G T A C T A G T C A G G T A C

At2g41835(C2H2)/col-At2g41835-DAP-Seq(GSE60143)/Homer

Match Rank:5
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--TGAAGA
TTTGAAAA
A C G T A C G T A C G T A C T G C T G A C T G A A C T G C T G A
G C A T A C G T A C G T A T C G C G T A C G T A C G T A C G T A

LIN28A(CSD,Znf)/Homo_sapiens-RNCMPT00036-PBM/HughesRNA

Match Rank:6
Score:0.65
Offset:0
Orientation:forward strand
Alignment:TGAAGA-
NGGAGAA
A C G T A C T G C T G A C T G A A C T G C T G A A C G T
G T A C A C T G A C T G C G T A A C T G C G T A C T G A

PABPN1(RRM)/Homo_sapiens-RNCMPT00157-PBM/HughesRNA

Match Rank:7
Score:0.65
Offset:0
Orientation:forward strand
Alignment:TGAAGA-
AGAAGAN
A C G T A C T G C T G A C T G A A C T G C T G A A C G T
C G T A C T A G C G T A C G T A T C A G C G T A A G T C

Tb_0251(RRM)/Trypanosoma_brucei-RNCMPT00251-PBM/HughesRNA

Match Rank:8
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--TGAAGA
TGTGAAT-
A C G T A C G T A C G T A C T G C T G A C T G A A C T G C T G A
A G C T A C T G A C G T A C T G C G T A C G T A C G A T A C G T

Pp_0237(RRM)/Physcomitrella_patens-RNCMPT00237-PBM/HughesRNA

Match Rank:9
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--TGAAGA
GATGGAGT
A C G T A C G T A C G T A C T G C T G A C T G A A C T G C T G A
A C T G C G T A A C G T A C T G A C T G C G T A C T A G A C G T

vvl/dmmpmm(Bigfoot)/fly

Match Rank:10
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TGAAGA
TGAATA
A C G T A C T G C T G A C T G A A C T G C T G A
A C G T T C A G G T C A C G T A A C G T C G T A