Information for 5-GGAGGATCTG (Motif 5)

A T C G T A C G T G C A C T A G C T A G G C T A C A G T A T G C G C A T A C T G
Reverse Opposite:
T G A C C G T A T A C G G T C A C G A T G A T C G A T C A C G T A T G C T A G C
p-value:1e-36
log p-value:-8.507e+01
Information Content per bp:1.531
Number of Target Sequences with motif742.0
Percentage of Target Sequences with motif36.95%
Number of Background Sequences with motif11242.3
Percentage of Background Sequences with motif24.13%
Average Position of motif in Targets97.4 +/- 45.8bp
Average Position of motif in Background100.2 +/- 66.2bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.22
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SF2(RRM)/Drosophila_melanogaster-RNCMPT00066-PBM/HughesRNA

Match Rank:1
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-GGAGGATCTG
NGGAGGA----
A C G T A T C G T A C G T G C A C T A G C T A G G C T A C A G T A T G C G C A T A C T G
C T G A A C T G C T A G G C T A A C T G A C T G C T G A A C G T A C G T A C G T A C G T

SRSF1(RRM)/Homo_sapiens-RNCMPT00107-PBM/HughesRNA

Match Rank:2
Score:0.74
Offset:0
Orientation:forward strand
Alignment:GGAGGATCTG
GGAGGAN---
A T C G T A C G T G C A C T A G C T A G G C T A C A G T A T G C G C A T A C T G
A C T G C T A G C G T A A C T G A C T G C T G A T G C A A C G T A C G T A C G T

NCU02404(RRM)/Neurospora_crassa-RNCMPT00238-PBM/HughesRNA

Match Rank:3
Score:0.74
Offset:0
Orientation:forward strand
Alignment:GGAGGATCTG
GGAGGAA---
A T C G T A C G T G C A C T A G C T A G G C T A C A G T A T G C G C A T A C T G
A C T G A C T G C G T A A C T G A C T G C G T A C T G A A C G T A C G T A C G T

SRSF1(RRM)/Homo_sapiens-RNCMPT00106-PBM/HughesRNA

Match Rank:4
Score:0.73
Offset:0
Orientation:forward strand
Alignment:GGAGGATCTG
GGAGGAN---
A T C G T A C G T G C A C T A G C T A G G C T A C A G T A T G C G C A T A C T G
A C T G C T A G C G T A A C T G A C T G C T G A T G A C A C G T A C G T A C G T

ARR10/MA0121.1/Jaspar

Match Rank:5
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:GGAGGATCTG
-GCGGATCT-
A T C G T A C G T G C A C T A G C T A G G C T A C A G T A T G C G C A T A C T G
A C G T A T C G G T A C C T A G C T A G C G T A A G C T A G T C A C G T A C G T

PF10_0068(RRM)/Plasmodium_falciparum-RNCMPT00199-PBM/HughesRNA

Match Rank:6
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-GGAGGATCTG
NGGAGGAA---
A C G T A T C G T A C G T G C A C T A G C T A G G C T A C A G T A T G C G C A T A C T G
C G A T A C T G A C T G C G T A A C T G A C T G C G T A C T G A A C G T A C G T A C G T

LIN28A(CSD)/Homo_sapiens-RNCMPT00162-PBM/HughesRNA

Match Rank:7
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-GGAGGATCTG
CGGAGGA----
A C G T A T C G T A C G T G C A C T A G C T A G G C T A C A G T A T G C G C A T A C T G
A G T C A T C G T A C G G T C A A T C G A T C G T C G A A C G T A C G T A C G T A C G T

SRSF1(RRM)/Homo_sapiens-RNCMPT00163-PBM/HughesRNA

Match Rank:8
Score:0.70
Offset:0
Orientation:forward strand
Alignment:GGAGGATCTG
GGAGGAG---
A T C G T A C G T G C A C T A G C T A G G C T A C A G T A T G C G C A T A C T G
A C T G A C T G C T G A C T A G T C A G G T C A T A C G A C G T A C G T A C G T

SRSF1(RRM)/Homo_sapiens-RNCMPT00109-PBM/HughesRNA

Match Rank:9
Score:0.70
Offset:0
Orientation:forward strand
Alignment:GGAGGATCTG
GGAGGAN---
A T C G T A C G T G C A C T A G C T A G G C T A C A G T A T G C G C A T A C T G
A C T G A C T G C G T A A T C G A C T G C T G A T C G A A C G T A C G T A C G T

ZmHOX2a(2)(HD-HOX)/Zea mays/AthaMap

Match Rank:10
Score:0.70
Offset:3
Orientation:forward strand
Alignment:GGAGGATCTG
---TGATCTG
A T C G T A C G T G C A C T A G C T A G G C T A C A G T A T G C G C A T A C T G
A C G T A C G T A C G T C A G T A C T G C G T A A C G T A G T C A C G T A C T G