Information for 13-CCCGTAGA (Motif 23)

T A G C A G T C A T G C A T C G A G C T G C T A A C T G C G T A
Reverse Opposite:
C G A T A G T C C G A T T C G A T A G C T A C G C T A G A T C G
p-value:1e-5
log p-value:-1.322e+01
Information Content per bp:1.801
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif5.94%
Number of Background Sequences with motif674.7
Percentage of Background Sequences with motif1.48%
Average Position of motif in Targets87.1 +/- 59.6bp
Average Position of motif in Background98.2 +/- 66.7bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

nit-4/MA1435.1/Jaspar

Match Rank:1
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-CCCGTAGA-
NNCCGCGGAN
A C G T T A G C A G T C A T G C A T C G A G C T G C T A A C T G C G T A A C G T
A G T C A G C T A G T C A G T C A C T G A T G C C T A G A C T G C T G A C T A G

gcm2/MA0917.1/Jaspar

Match Rank:2
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-CCCGTAGA
ACCCGCAT-
A C G T T A G C A G T C A T G C A T C G A G C T G C T A A C T G C G T A
T C G A A G T C A G T C G T A C A T C G A G T C C T G A A G C T A C G T

SFP1/SFP1_SM/50-RAP1(Harbison)/Yeast

Match Rank:3
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CCCGTAGA-
ACCCGTACAT
A C G T T A G C A G T C A T G C A T C G A G C T G C T A A C T G C G T A A C G T
T C G A A G T C A G T C G A T C C T A G G C A T T C G A G T A C T G C A G A C T

Tb_0252(RRM)/Trypanosoma_brucei-RNCMPT00252-PBM/HughesRNA

Match Rank:4
Score:0.67
Offset:2
Orientation:forward strand
Alignment:CCCGTAGA-
--AGTAGAT
T A G C A G T C A T G C A T C G A G C T G C T A A C T G C G T A A C G T
A C G T A C G T C G T A A C T G A C G T C G T A A C T G C T G A C G A T

GCM2/MA0767.1/Jaspar

Match Rank:5
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--CCCGTAGA
TACCCGCATN
A C G T A C G T T A G C A G T C A T G C A T C G A G C T G C T A A C T G C G T A
G A C T C T G A A G T C G T A C G T A C T A C G A G T C T C G A A G C T T G C A

SFP1(MacIsaac)/Yeast

Match Rank:6
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CCCGTAGA-
ACCCGTACAT
A C G T T A G C A G T C A T G C A T C G A G C T G C T A A C T G C G T A A C G T
T C G A G A T C G A T C A G T C C T A G G C A T T C G A G T A C G T C A A G C T

FHL1/FHL1_YPD/47-RAP1(Harbison)/Yeast

Match Rank:7
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--CCCGTAGA-
CACCCGTACAT
A C G T A C G T T A G C A G T C A T G C A T C G A G C T G C T A A C T G C G T A A C G T
T G A C T G C A A G T C A G T C G A T C C T A G G A C T T C G A G A T C T G C A A G C T

PB0024.1_Gcm1_1/Jaspar

Match Rank:8
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----CCCGTAGA---
TCGTACCCGCATCATT
A C G T A C G T A C G T A C G T A C G T T A G C A G T C A T G C A T C G A G C T G C T A A C T G C G T A A C G T A C G T A C G T
G C A T T G A C T C A G C G A T T C G A G T A C G T A C G T A C A T C G A G T C C G T A A G C T T A G C C G T A G A C T C A G T

FHL1(MacIsaac)/Yeast

Match Rank:9
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CCCGTAGA-
ATCCGTACAT
A C G T T A G C A G T C A T G C A T C G A G C T G C T A A C T G C G T A A C G T
T G C A A G C T G T A C G A T C C T A G A C G T T C G A G A T C G T C A G A C T

PDR8/MA0354.1/Jaspar

Match Rank:10
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CCCGTAGA-
-ACGGAGAT
T A G C A G T C A T G C A T C G A G C T G C T A A C T G C G T A A C G T
A C G T T C A G A G T C A C T G A C T G C G T A T A C G C G T A C G A T