Information for 7-GAGAGAAGACGC (Motif 6)

T A C G C G T A A T C G G T C A T A C G T C G A G C T A C T A G C G T A A G T C A T C G A G T C
Reverse Opposite:
T A C G T A G C T C A G C G A T A G T C C G A T A C G T A G T C A C G T A T G C G C A T A G T C
p-value:1e-33
log p-value:-7.781e+01
Information Content per bp:1.745
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif0.99%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets95.4 +/- 15.8bp
Average Position of motif in Background113.0 +/- 25.6bp
Strand Bias (log2 ratio + to - strand density)1.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PABPN1(RRM)/Homo_sapiens-RNCMPT00157-PBM/HughesRNA

Match Rank:1
Score:0.75
Offset:3
Orientation:forward strand
Alignment:GAGAGAAGACGC
---AGAAGAN--
T A C G C G T A A T C G G T C A T A C G T C G A G C T A C T A G C G T A A G T C A T C G A G T C
A C G T A C G T A C G T C G T A C T A G C G T A C G T A T C A G C G T A A G T C A C G T A C G T

RNP4F(RRM)/Drosophila_melanogaster-RNCMPT00060-PBM/HughesRNA

Match Rank:2
Score:0.73
Offset:1
Orientation:forward strand
Alignment:GAGAGAAGACGC
-AGAGAAG----
T A C G C G T A A T C G G T C A T A C G T C G A G C T A C T A G C G T A A G T C A T C G A G T C
A C G T C G T A A C T G C G T A A C T G C T G A C T G A C T A G A C G T A C G T A C G T A C G T

Unknown4/Arabidopsis-Promoters/Homer

Match Rank:3
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:GAGAGAAGACGC
-RAAGAMGAMG-
T A C G C G T A A T C G G T C A T A C G T C G A G C T A C T A G C G T A A G T C A T C G A G T C
A C G T C T A G C T G A T G C A C T A G C G T A G T A C C T A G T G C A G T C A T A C G A C G T

REF2(RRM)/Drosophila_melanogaster-RNCMPT00059-PBM/HughesRNA

Match Rank:4
Score:0.67
Offset:3
Orientation:forward strand
Alignment:GAGAGAAGACGC
---AGAAGGC--
T A C G C G T A A T C G G T C A T A C G T C G A G C T A C T A G C G T A A G T C A T C G A G T C
A C G T A C G T A C G T C G T A A C T G C G T A C G T A C T A G T C A G G T A C A C G T A C G T

SRSF10(RRM)/Homo_sapiens-RNCMPT00089-PBM/HughesRNA

Match Rank:5
Score:0.67
Offset:1
Orientation:forward strand
Alignment:GAGAGAAGACGC
-AGAGAAA----
T A C G C G T A A T C G G T C A T A C G T C G A G C T A C T A G C G T A A G T C A T C G A G T C
A C G T C G T A C T A G C G T A C T A G C T G A T C G A T C G A A C G T A C G T A C G T A C G T

SRSF10(RRM)/Homo_sapiens-RNCMPT00090-PBM/HughesRNA

Match Rank:6
Score:0.67
Offset:1
Orientation:forward strand
Alignment:GAGAGAAGACGC
-AGAGAAA----
T A C G C G T A A T C G G T C A T A C G T C G A G C T A C T A G C G T A A G T C A T C G A G T C
A C G T C G T A A C T G C G T A C T A G C G T A T G C A T G C A A C G T A C G T A C G T A C G T

Trl/dmmpmm(Pollard)/fly

Match Rank:7
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--GAGAGAAGACGC
GAGAGAGCAA----
A C G T A C G T T A C G C G T A A T C G G T C A T A C G T C G A G C T A C T A G C G T A A G T C A T C G A G T C
T C A G T C G A A T C G G C T A A C T G G T C A T C A G G T A C T C G A T C G A A C G T A C G T A C G T A C G T

SRSF10(RRM)/Homo_sapiens-RNCMPT00019-PBM/HughesRNA

Match Rank:8
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GAGAGAAGACGC
-AGAGAAA----
T A C G C G T A A T C G G T C A T A C G T C G A G C T A C T A G C G T A A G T C A T C G A G T C
A C G T C G T A C T A G C G T A C T A G G T C A T G C A T G C A A C G T A C G T A C G T A C G T

DAL82/DAL82_SM/3-DAL82(Harbison)/Yeast

Match Rank:9
Score:0.65
Offset:2
Orientation:forward strand
Alignment:GAGAGAAGACGC
--GATAAGA---
T A C G C G T A A T C G G T C A T A C G T C G A G C T A C T A G C G T A A G T C A T C G A G T C
A C G T A C G T A C T G T C G A A C G T T G C A C T G A A T C G T C G A A C G T A C G T A C G T

Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer

Match Rank:10
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GAGAGAAGACGC
NVAGATAAGR---
A C G T T A C G C G T A A T C G G T C A T A C G T C G A G C T A C T A G C G T A A G T C A T C G A G T C
T C A G T A G C G C T A C A T G C T G A G C A T C G T A C T G A T A C G T C G A A C G T A C G T A C G T