Information for 8-GCAAGARTAC (Motif 5)

C T A G A G T C C G T A C G T A A T C G G T C A C T A G C G A T G T C A A G T C
Reverse Opposite:
A C T G A C G T C G T A A G T C A C G T A T G C A C G T A C G T T C A G G A T C
p-value:1e-8
log p-value:-1.871e+01
Information Content per bp:1.766
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif4.10%
Number of Background Sequences with motif145.1
Percentage of Background Sequences with motif0.31%
Average Position of motif in Targets113.1 +/- 52.2bp
Average Position of motif in Background94.4 +/- 58.1bp
Strand Bias (log2 ratio + to - strand density)-3.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MATR3(RRM)/Homo_sapiens-RNCMPT00037-PBM/HughesRNA

Match Rank:1
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:GCAAGARTAC
-CAAGATT--
C T A G A G T C C G T A C G T A A T C G G T C A C T A G C G A T G T C A A G T C
A C G T A G T C C G T A C G T A A C T G C G T A C G A T A C G T A C G T A C G T

NAC078/MA1677.1/Jaspar

Match Rank:2
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GCAAGARTAC-
AACAAGAAACAT
A C G T C T A G A G T C C G T A C G T A A T C G G T C A C T A G C G A T G T C A A G T C A C G T
G C T A C T G A A G T C C G T A G T C A A C T G G C T A G C T A C G T A G A T C G T C A C G A T

ZNF136/MA1588.1/Jaspar

Match Rank:3
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----GCAAGARTAC
GTCAACCAAGAATTC
A C G T A C G T A C G T A C G T A C G T C T A G A G T C C G T A C G T A A T C G G T C A C T A G C G A T G T C A A G T C
C A T G G A C T G A T C G T C A C T G A A G T C G A T C G T C A T C G A C T A G C T G A C G T A A G C T G C A T A G T C

MBNL1(Znf)/Homo_sapiens-RNCMPT00038-PBM/HughesRNA

Match Rank:4
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GCAAGARTAC
GCAAGCN---
C T A G A G T C C G T A C G T A A T C G G T C A C T A G C G A T G T C A A G T C
A T C G A G T C C G T A C G T A C T A G A T G C G C A T A C G T A C G T A C G T

gt/dmmpmm(Papatsenko)/fly

Match Rank:5
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--GCAAGARTAC
ACGTAATAAT--
A C G T A C G T C T A G A G T C C G T A C G T A A T C G G T C A C T A G C G A T G T C A A G T C
T C G A G T A C T A C G A G C T G T C A C G T A C G A T C G T A C G T A C G A T A C G T A C G T

ROX1/Literature(Harbison)/Yeast

Match Rank:6
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:GCAAGARTAC-
--AACAATACA
C T A G A G T C C G T A C G T A A T C G G T C A C T A G C G A T G T C A A G T C A C G T
A C G T A C G T C G T A C G T A A G T C C G T A C G T A A C G T C T A G A T C G C T A G

ap/dmmpmm(Down)/fly

Match Rank:7
Score:0.60
Offset:2
Orientation:forward strand
Alignment:GCAAGARTAC
--AATAATA-
C T A G A G T C C G T A C G T A A T C G G T C A C T A G C G A T G T C A A G T C
A C G T A C G T G T C A G C T A G C A T G C T A C T G A G C A T T G C A A C G T

At1g25550(G2like)/colamp-At1g25550-DAP-Seq(GSE60143)/Homer

Match Rank:8
Score:0.60
Offset:2
Orientation:forward strand
Alignment:GCAAGARTAC
--NAGATTCY
C T A G A G T C C G T A C G T A A T C G G T C A C T A G C G A T G T C A A G T C
A C G T A C G T G C T A C G T A A C T G C G T A C G A T A C G T A G T C A G C T

PB0134.1_Hnf4a_2/Jaspar

Match Rank:9
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GCAAGARTAC-----
GGCAAAAGTCCAATAA
A C G T C T A G A G T C C G T A C G T A A T C G G T C A C T A G C G A T G T C A A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

At3g12730(G2like)/colamp-At3g12730-DAP-Seq(GSE60143)/Homer

Match Rank:10
Score:0.59
Offset:2
Orientation:forward strand
Alignment:GCAAGARTAC
--AAGATTCT
C T A G A G T C C G T A C G T A A T C G G T C A C T A G C G A T G T C A A G T C
A C G T A C G T G C T A C G T A A C T G C G T A C G A T A C G T A G T C A G C T