Information for 13-ATACAATGTTCA (Motif 13)

G T C A A C G T C G T A A G T C C G T A C G T A A C G T A C T G A C G T A C G T A T G C C G T A
Reverse Opposite:
A C G T A T C G C G T A C G T A A G T C C G T A A C G T A C G T A C T G A C G T C G T A A C G T
p-value:1e-9
log p-value:-2.240e+01
Information Content per bp:1.954
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif5.80%
Number of Background Sequences with motif6.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets58.0 +/- 45.0bp
Average Position of motif in Background100.2 +/- 54.4bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tb_0216(RRM)/Trypanosoma_brucei-RNCMPT00216-PBM/HughesRNA

Match Rank:1
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:ATACAATGTTCA
-NACAATG----
G T C A A C G T C G T A A G T C C G T A C G T A A C G T A C T G A C G T A C G T A T G C C G T A
A C G T G C A T C G T A A G T C C G T A C G T A A C G T A C T G A C G T A C G T A C G T A C G T

dsx/dmmpmm(Bergman)/fly

Match Rank:2
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---ATACAATGTTCA--
NTAANACAATGTANCNN
A C G T A C G T A C G T G T C A A C G T C G T A A G T C C G T A C G T A A C G T A C T G A C G T A C G T A T G C C G T A A C G T A C G T
A C T G A G C T T C G A G T C A A G T C C G T A A G T C C G T A C G T A C G A T A C T G A G C T C G T A C A G T A G T C C G A T A G C T

SOX2/MA0143.4/Jaspar

Match Rank:3
Score:0.68
Offset:0
Orientation:forward strand
Alignment:ATACAATGTTCA
AAACAATGGAA-
G T C A A C G T C G T A A G T C C G T A C G T A A C G T A C T G A C G T A C G T A T G C C G T A
C G T A C G T A G C T A G A T C G C T A T C G A C G A T C T A G C T A G C G T A G C T A A C G T

Dmrt1/MA1603.1/Jaspar

Match Rank:4
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-ATACAATGTTCA
GATACAAAGTATC
A C G T G T C A A C G T C G T A A G T C C G T A C G T A A C G T A C T G A C G T A C G T A T G C C G T A
C T A G G C T A G C A T C G T A G A T C G C T A G C T A C G T A C T A G C G A T C G T A C G A T G T A C

SOX13/MA1120.1/Jaspar

Match Rank:5
Score:0.67
Offset:0
Orientation:forward strand
Alignment:ATACAATGTTCA
AAACAATGGCA-
G T C A A C G T C G T A A G T C C G T A C G T A A C G T A C T G A C G T A C G T A T G C C G T A
C T G A T C G A C T G A A G T C G C T A C T G A G C A T C T A G T C A G T G A C G C T A A C G T

dmrt99B/MA1455.1/Jaspar

Match Rank:6
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---ATACAATGTTCA--
TTGTTACAATGTATCAA
A C G T A C G T A C G T G T C A A C G T C G T A A G T C C G T A C G T A A C G T A C T G A C G T A C G T A T G C C G T A A C G T A C G T
G C A T G C A T C T A G G C A T G C A T C T G A A G T C C G T A T C G A G C A T C T A G G A C T C G T A C G A T G A T C C T G A C G T A

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:7
Score:0.65
Offset:-6
Orientation:reverse strand
Alignment:------ATACAATGTTCA
ATTTGCATACAATGG---
A C G T A C G T A C G T A C G T A C G T A C G T G T C A A C G T C G T A A G T C C G T A C G T A A C G T A C T G A C G T A C G T A T G C C G T A
G T C A A G C T G A C T C G A T T C A G T G A C C G T A G A C T C G T A A T G C C G T A C G T A C G A T C T A G T C A G A C G T A C G T A C G T

Sox17/MA0078.1/Jaspar

Match Rank:8
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:ATACAATGTTCA
-GACAATGNN--
G T C A A C G T C G T A A G T C C G T A C G T A A C G T A C T G A C G T A C G T A T G C C G T A
A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G A C G T A C G T

DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer

Match Rank:9
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---ATACAATGTTCA
YDGHTACAWTGTADC
A C G T A C G T A C G T G T C A A C G T C G T A A G T C C G T A C G T A A C G T A C T G A C G T A C G T A T G C C G T A
G A C T C G A T C A T G G C T A G C A T C G T A A G T C G C T A G C A T C G A T T A C G G C A T C G T A C A G T G A T C

DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer

Match Rank:10
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---ATACAATGTTCA
TWGHWACAWTGTWDC
A C G T A C G T A C G T G T C A A C G T C G T A A G T C C G T A C G T A A C G T A C T G A C G T A C G T A T G C C G T A
G C A T C G A T C T A G G C T A G C A T C G T A G A T C G C T A C G A T C G A T C T A G C G A T C G T A C G A T G A T C