Information for 5-GACAGGCGTGTG (Motif 5)

T A C G C T G A A G T C G C T A A C T G A C T G A G T C A C T G A C G T A C T G A C G T A C T G
Reverse Opposite:
A G T C C G T A A G T C C G T A A G T C C T A G A G T C A G T C C A G T A C T G A G C T A G T C
p-value:1e-27
log p-value:-6.325e+01
Information Content per bp:1.857
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif2.83%
Number of Background Sequences with motif3.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets45.2 +/- 46.2bp
Average Position of motif in Background81.3 +/- 25.3bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rbm24(RRM)/Tetraodon_nigroviridis-RNCMPT00285-PBM/HughesRNA

Match Rank:1
Score:0.73
Offset:5
Orientation:forward strand
Alignment:GACAGGCGTGTG-
-----GAGTGTGN
T A C G C T G A A G T C G C T A A C T G A C T G A G T C A C T G A C G T A C T G A C G T A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C T G A C G T A C T G C G A T C T A G C T A G

Rbm38(RRM)/Danio_rerio-RNCMPT00283-PBM/HughesRNA

Match Rank:2
Score:0.72
Offset:5
Orientation:forward strand
Alignment:GACAGGCGTGTG
-----GTGTGTG
T A C G C T G A A G T C G C T A A C T G A C T G A G T C A C T G A C G T A C T G A C G T A C T G
A C G T A C G T A C G T A C G T A C G T A C T G C G A T A C T G A C G T A C T G A C G T C A T G

RBM38(RRM)/Mus_musculus-RNCMPT00051-PBM/HughesRNA

Match Rank:3
Score:0.70
Offset:5
Orientation:forward strand
Alignment:GACAGGCGTGTG
-----GTGTGTG
T A C G C T G A A G T C G C T A A C T G A C T G A G T C A C T G A C G T A C T G A C G T A C T G
A C G T A C G T A C G T A C G T A C G T A C T G A C G T A C T G A C G T A C T G A C G T A C T G

CG33714(RRM)/Drosophila_melanogaster-RNCMPT00009-PBM/HughesRNA

Match Rank:4
Score:0.70
Offset:3
Orientation:forward strand
Alignment:GACAGGCGTGTG
---NGGCGTG--
T A C G C T G A A G T C G C T A A C T G A C T G A G T C A C T G A C G T A C T G A C G T A C T G
A C G T A C G T A C G T A T C G A T C G A C T G A G T C A C T G A G C T A C T G A C G T A C G T

Tp_0225(RRM)/Thalassiosira_pseudonana-RNCMPT00225-PBM/HughesRNA

Match Rank:5
Score:0.69
Offset:5
Orientation:reverse strand
Alignment:GACAGGCGTGTG
-----GCGTGTT
T A C G C T G A A G T C G C T A A C T G A C T G A G T C A C T G A C G T A C T G A C G T A C T G
A C G T A C G T A C G T A C G T A C G T C T A G A G T C A C T G A G C T A T C G A C G T C G A T

SUP-12(RRM)/Caenorhabditis_elegans-RNCMPT00179-PBM/HughesRNA

Match Rank:6
Score:0.69
Offset:6
Orientation:forward strand
Alignment:GACAGGCGTGTG-
------TGTGTGA
T A C G C T G A A G T C G C T A A C T G A C T G A G T C A C T G A C G T A C T G A C G T A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C T G C G A T A C T G A C G T A C T G C G T A

Ptf1a(var.3)/MA1620.1/Jaspar

Match Rank:7
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-GACAGGCGTGTG
NNACAGGTGTNN-
A C G T T A C G C T G A A G T C G C T A A C T G A C T G A G T C A C T G A C G T A C T G A C G T A C T G
C T A G T G A C T C G A T G A C T G C A A T C G T A C G G C A T A C T G A G C T A C T G A G C T A C G T

Rbpjl/MA1621.1/Jaspar

Match Rank:8
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--GACAGGCGTGTG
NNNACAGGTGTNNN
A C G T A C G T T A C G C T G A A G T C G C T A A C T G A C T G A G T C A C T G A C G T A C T G A C G T A C T G
T C A G C T A G T A C G T C G A T A G C T C G A A T C G T A C G G A C T C A T G A G C T A C G T A G T C T A C G

FAR1/MA1382.1/Jaspar

Match Rank:9
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:GACAGGCGTGTG----
-NNAGGCGCGTGANNN
T A C G C T G A A G T C G C T A A C T G A C T G A G T C A C T G A C G T A C T G A C G T A C T G A C G T A C G T A C G T A C G T
A C G T C T A G C T A G G T C A T C A G C T A G G T A C C T A G A G T C A C T G A C G T T A C G C T G A C T A G C T A G C G A T

RBM24(RRM)/Homo_sapiens-RNCMPT00184-PBM/HughesRNA

Match Rank:10
Score:0.67
Offset:6
Orientation:forward strand
Alignment:GACAGGCGTGTG-
------AGTGTGA
T A C G C T G A A G T C G C T A A C T G A C T G A G T C A C T G A C G T A C T G A C G T A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G C G A T A C T G A C G T A C T G C G T A