Information for 10-CAAAATAAAA (Motif 11)

A G T C G T C A C G T A C T G A C G T A A C G T G T C A C G T A C T G A C G T A
Reverse Opposite:
A C G T A G C T A C G T A C G T C G T A A C G T A G C T C G A T A C G T A C T G
p-value:1e-12
log p-value:-2.846e+01
Information Content per bp:1.921
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif5.70%
Number of Background Sequences with motif417.2
Percentage of Background Sequences with motif0.92%
Average Position of motif in Targets58.9 +/- 46.5bp
Average Position of motif in Background97.9 +/- 66.3bp
Strand Bias (log2 ratio + to - strand density)-2.1
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HuR(RRM)/Homo_sapiens-RNCMPT00032-PBM/HughesRNA

Match Rank:1
Score:0.78
Offset:1
Orientation:reverse strand
Alignment:CAAAATAAAA
-AAAATAA--
A G T C G T C A C G T A C T G A C G T A A C G T G T C A C G T A C T G A C G T A
A C G T T C G A C G T A C G T A G T C A G C A T C G T A C G T A A C G T A C G T

KHDRBS1(KH)/Homo_sapiens-RNCMPT00169-PBM/HughesRNA

Match Rank:2
Score:0.77
Offset:4
Orientation:forward strand
Alignment:CAAAATAAAA-
----ATAAAAG
A G T C G T C A C G T A C T G A C G T A A C G T G T C A C G T A C T G A C G T A A C G T
A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A C G T A T C A G

zen/dmmpmm(Bigfoot)/fly

Match Rank:3
Score:0.76
Offset:3
Orientation:forward strand
Alignment:CAAAATAAAA
---AATAAA-
A G T C G T C A C G T A C T G A C G T A A C G T G T C A C G T A C T G A C G T A
A C G T A C G T A C G T G T C A C G T A A C G T C G T A C G T A C G T A A C G T

PB0123.1_Foxl1_2/Jaspar

Match Rank:4
Score:0.76
Offset:-4
Orientation:forward strand
Alignment:----CAAAATAAAA--
ATATCAAAACAAAACA
A C G T A C G T A C G T A C G T A G T C G T C A C G T A C T G A C G T A A C G T G T C A C G T A C T G A C G T A A C G T A C G T
G C T A C G A T C G T A C G A T G A T C G C T A G C T A G T C A C G T A A G T C C G T A C G T A G T C A C G T A G T A C G T C A

croc/dmmpmm(Bergman)/fly

Match Rank:5
Score:0.76
Offset:4
Orientation:forward strand
Alignment:CAAAATAAAA
----ATAAAA
A G T C G T C A C G T A C T G A C G T A A C G T G T C A C G T A C T G A C G T A
A C G T A C G T A C G T A C G T C T G A A C G T C G T A C G T A G T C A C G T A

KHDRBS2(KH)/Homo_sapiens-RNCMPT00185-PBM/HughesRNA

Match Rank:6
Score:0.76
Offset:3
Orientation:forward strand
Alignment:CAAAATAAAA
---GATAAAA
A G T C G T C A C G T A C T G A C G T A A C G T G T C A C G T A C T G A C G T A
A C G T A C G T A C G T C T A G G T C A A G C T C G T A C G T A C G T A G T C A

VRN1(ABI3VP1)/col-VRN1-DAP-Seq(GSE60143)/Homer

Match Rank:7
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:CAAAATAAAA-
-AAAAAAAAAA
A G T C G T C A C G T A C T G A C G T A A C G T G T C A C G T A C T G A C G T A A C G T
A C G T C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A

SeqBias: polyA-repeat

Match Rank:8
Score:0.75
Offset:1
Orientation:forward strand
Alignment:CAAAATAAAA-
-AAAAAAAAAA
A G T C G T C A C G T A C T G A C G T A A C G T G T C A C G T A C T G A C G T A A C G T
A C G T C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A

MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer

Match Rank:9
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--CAAAATAAAA---
TTCAAAWTAAAAGTC
A C G T A C G T A G T C G T C A C G T A C T G A C G T A A C G T G T C A C G T A C T G A C G T A A C G T A C G T A C G T
C A G T G A C T A G T C G C T A C T G A G T C A C G T A A G C T G T C A C T G A C T G A C T G A A C T G A G C T G A T C

PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer

Match Rank:10
Score:0.74
Offset:2
Orientation:forward strand
Alignment:CAAAATAAAA--
--HAATAAAGNN
A G T C G T C A C G T A C T G A C G T A A C G T G T C A C G T A C T G A C G T A A C G T A C G T
A C G T A C G T G A T C G C T A C G T A C G A T C G T A G T C A C T G A A T C G C G A T A C G T