Information for 3-YTTAAACMWTTYCT (Motif 3)

A G C T A C G T A C G T C G T A C G T A C G T A A G T C G T A C C G A T A C G T A C G T A G T C G T A C A C G T
Reverse Opposite:
C G T A A C T G C T A G C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T C G T A C G T A C T G A
p-value:1e-9
log p-value:-2.095e+01
Information Content per bp:1.887
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif6.17%
Number of Background Sequences with motif25.6
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets128.0 +/- 22.4bp
Average Position of motif in Background97.0 +/- 72.4bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Kr/MA0452.2/Jaspar

Match Rank:1
Score:0.67
Offset:0
Orientation:forward strand
Alignment:YTTAAACMWTTYCT
TTTAACCCTTTTTC
A G C T A C G T A C G T C G T A C G T A C G T A A G T C G T A C C G A T A C G T A C G T A G T C G T A C A C G T
A G C T C A G T G A C T C G T A G T C A G A T C A G T C A G T C A G C T A C G T A G C T A G C T G A C T A G T C

ct/MA0218.1/Jaspar

Match Rank:2
Score:0.66
Offset:1
Orientation:forward strand
Alignment:YTTAAACMWTTYCT
-TTGAAC-------
A G C T A C G T A C G T C G T A C G T A C G T A A G T C G T A C C G A T A C G T A C G T A G T C G T A C A C G T
A C G T A G C T G A C T C T A G C G T A C G T A A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer

Match Rank:3
Score:0.66
Offset:1
Orientation:forward strand
Alignment:YTTAAACMWTTYCT--
-TTAACCCTTTVNKKN
A G C T A C G T A C G T C G T A C G T A C G T A A G T C G T A C C G A T A C G T A C G T A G T C G T A C A C G T A C G T A C G T
A C G T C A G T G A C T C G T A G C T A G T A C G A T C G T A C G A C T A G C T A C G T T G A C C G T A C A G T A C G T A T G C

Ct/dmmpmm(Noyes_hd)/fly

Match Rank:4
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-YTTAAACMWTTYCT
GCTTGAACAA-----
A C G T A G C T A C G T A C G T C G T A C G T A C G T A A G T C G T A C C G A T A C G T A C G T A G T C G T A C A C G T
A C G T A T G C A G C T G A C T C T A G C G T A C G T A A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Foxq1/MA0040.1/Jaspar

Match Rank:5
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:YTTAAACMWTTYCT
AATAAACAATN---
A G C T A C G T A C G T C G T A C G T A C G T A A G T C G T A C C G A T A C G T A C G T A G T C G T A C A C G T
G C T A T G C A A G C T C G T A C G T A C G T A A G T C C G T A C G T A A G C T C G T A A C G T A C G T A C G T

Kr/dmmpmm(Bergman)/fly

Match Rank:6
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:YTTAAACMWTTYCT
-TTAACCCGTT---
A G C T A C G T A C G T C G T A C G T A C G T A A G T C G T A C C G A T A C G T A C G T A G T C G T A C A C G T
A C G T A C G T A C G T C G T A C G T A A G T C A G T C A G T C A C T G A C G T A C G T A C G T A C G T A C G T

Kr/dmmpmm(Bigfoot)/fly

Match Rank:7
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:YTTAAACMWTTYCT
--TAACCCTTTT--
A G C T A C G T A C G T C G T A C G T A C G T A A G T C G T A C C G A T A C G T A C G T A G T C G T A C A C G T
A C G T A C G T A G C T C G T A G C T A A G T C G A T C G A T C A C G T A C G T A C G T A G C T A C G T A C G T

Kr/dmmpmm(Down)/fly

Match Rank:8
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:YTTAAACMWTTYCT
--TAACCCTTTT--
A G C T A C G T A C G T C G T A C G T A C G T A A G T C G T A C C G A T A C G T A C G T A G T C G T A C A C G T
A C G T A C G T G A C T T G C A T G C A A G T C G A T C G A T C A C G T C A G T A C G T A G C T A C G T A C G T

PB0175.1_Sox4_2/Jaspar

Match Rank:9
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-YTTAAACMWTTYCT--
TNCNNAACAATTTTTNC
A C G T A G C T A C G T A C G T C G T A C G T A C G T A A G T C G T A C C G A T A C G T A C G T A G T C G T A C A C G T A C G T A C G T
G A C T G A C T G A T C A T G C G A C T C T G A C G T A A G T C C G T A C T G A G A C T G A C T G A C T G A C T C G A T A G T C A T G C

Pp_0206(RRM)/Physcomitrella_patens-RNCMPT00206-PBM/HughesRNA

Match Rank:10
Score:0.61
Offset:3
Orientation:forward strand
Alignment:YTTAAACMWTTYCT
---NAACCTTT---
A G C T A C G T A C G T C G T A C G T A C G T A A G T C G T A C C G A T A C G T A C G T A G T C G T A C A C G T
A C G T A C G T A C G T G T C A C T G A C G T A G T A C G T A C A C G T C G A T C A G T A C G T A C G T A C G T