Information for 3-MCATCATGAT (Motif 4)

T G C A G T A C C G T A A G C T T G A C G T C A A C G T A C T G C T G A A G C T
Reverse Opposite:
C T G A G A C T T G A C C G T A A C G T A C T G T C G A G C A T A C T G A C G T
p-value:1e-13
log p-value:-3.088e+01
Information Content per bp:1.633
Number of Target Sequences with motif68.0
Percentage of Target Sequences with motif23.21%
Number of Background Sequences with motif3916.8
Percentage of Background Sequences with motif8.60%
Average Position of motif in Targets103.7 +/- 52.3bp
Average Position of motif in Background97.8 +/- 62.7bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tv_0259(RRM)/Trichomonas_vaginalis-RNCMPT00259-PBM/HughesRNA

Match Rank:1
Score:0.78
Offset:2
Orientation:forward strand
Alignment:MCATCATGAT
--ACCATGN-
T G C A G T A C C G T A A G C T T G A C G T C A A C G T A C T G C T G A A G C T
A C G T A C G T C G T A A G T C A G T C C G T A A C G T A C T G C T G A A C G T

AGL42/MA1201.1/Jaspar

Match Rank:2
Score:0.77
Offset:1
Orientation:forward strand
Alignment:MCATCATGAT
-CATCATC--
T G C A G T A C C G T A A G C T T G A C G T C A A C G T A C T G C T G A A G C T
A C G T A G T C C G T A A G C T A G T C C G T A A C G T G A T C A C G T A C G T

ATHB15(HB)/col-ATHB15-DAP-Seq(GSE60143)/Homer

Match Rank:3
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:MCATCATGAT
TAATSATTRC
T G C A G T A C C G T A A G C T T G A C G T C A A C G T A C T G C T G A A G C T
G A C T T G C A C G T A A C G T T A G C C G T A A C G T C A G T C T G A A G T C

PHV(HB)/col-PHV-DAP-Seq(GSE60143)/Homer

Match Rank:4
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:MCATCATGAT
TAATSATTAY
T G C A G T A C C G T A A G C T T G A C G T C A A C G T A C T G C T G A A G C T
G A C T G T C A C G T A A C G T T A C G C G T A A C G T A C G T C T G A A G T C

HAT1/MA1024.1/Jaspar

Match Rank:5
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-MCATCATGAT
CCAATCATTA-
A C G T T G C A G T A C C G T A A G C T T G A C G T C A A C G T A C T G C T G A A G C T
A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G A T A C G T C T G A A C G T

ATHB6(Homeobox)/Arabidopsis-HB6-ChIP-Seq(GSE80564)/Homer

Match Rank:6
Score:0.69
Offset:0
Orientation:forward strand
Alignment:MCATCATGAT
CAATNATTBN
T G C A G T A C C G T A A G C T T G A C G T C A A C G T A C T G C T G A A G C T
A G T C G T C A G C T A C G A T T G C A C G T A C G A T C A G T A T C G C T A G

ATHB-6/MA0953.1/Jaspar

Match Rank:7
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-MCATCATGAT
GCAATAATT--
A C G T T G C A G T A C C G T A A G C T T G A C G T C A A C G T A C T G C T G A A G C T
A C T G G A T C G C T A G T C A G C A T G T C A C T G A C A G T C A G T A C G T A C G T

Btn/dmmpmm(Noyes_hd)/fly

Match Rank:8
Score:0.67
Offset:0
Orientation:forward strand
Alignment:MCATCATGAT
NNTTAATGAC
T G C A G T A C C G T A A G C T T G A C G T C A A C G T A C T G C T G A A G C T
G T A C A G T C C G A T A C G T C T G A C G T A A G C T A C T G C T G A T G A C

ZML2(C2C2gata)/col-ZML2-DAP-Seq(GSE60143)/Homer

Match Rank:9
Score:0.67
Offset:1
Orientation:forward strand
Alignment:MCATCATGAT-
-CATCATCATC
T G C A G T A C C G T A A G C T T G A C G T C A A C G T A C T G C T G A A G C T A C G T
A C G T T A G C G T C A G A C T T A G C G T C A G A C T A G T C G C T A G A C T G A T C

ATHB4/MA1406.1/Jaspar

Match Rank:10
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-MCATCATGAT
NCAATGATTA-
A C G T T G C A G T A C C G T A A G C T T G A C G T C A A C G T A C T G C T G A A G C T
T A G C G A T C G C T A G C T A G C A T T A C G C T G A C A G T C G A T C T G A A C G T