Information for 16-GTCTTCCTCAGTAW (Motif 20)

A C T G G A C T A G T C G C A T C G A T G A T C G A T C G A C T A T G C G C T A C A T G A G C T C G T A G C T A
Reverse Opposite:
C G A T G C A T T C G A G T A C C G A T A T C G C G T A C T A G C T A G G C T A C G T A T C A G C G T A T G A C
p-value:1e-10
log p-value:-2.524e+01
Information Content per bp:1.554
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif0.60%
Number of Background Sequences with motif8.2
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets120.4 +/- 40.6bp
Average Position of motif in Background110.1 +/- 19.6bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PABPC3(RRM)/Homo_sapiens-RNCMPT00153-PBM/HughesRNA

Match Rank:1
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GTCTTCCTCAGTAW
GGTTTTC--------
A C G T A C T G G A C T A G T C G C A T C G A T G A T C G A T C G A C T A T G C G C T A C A T G A G C T C G T A G C T A
A C T G C A T G A C G T A C G T A C G T A C G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Tb_0253(RRM)/Trypanosoma_brucei-RNCMPT00253-PBM/HughesRNA

Match Rank:2
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GTCTTCCTCAGTAW
-TTTTTCT------
A C T G G A C T A G T C G C A T C G A T G A T C G A T C G A C T A T G C G C T A C A T G A G C T C G T A G C T A
A C G T A G C T A G C T A C G T A G C T A C G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

TRA2(RRM)/Drosophila_melanogaster-RNCMPT00078-PBM/HughesRNA

Match Rank:3
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GTCTTCCTCAGTAW
--CTTCTTC-----
A C T G G A C T A G T C G C A T C G A T G A T C G A T C G A C T A T G C G C T A C A T G A G C T C G T A G C T A
A C G T A C G T T A G C A C G T A C G T A T G C A G C T A C G T A G T C A C G T A C G T A C G T A C G T A C G T

RLR1/RLR1_YPD/[](Harbison)/Yeast

Match Rank:4
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GTCTTCCTCAGTAW
ATTTTCTTCTTT--
A C T G G A C T A G T C G C A T C G A T G A T C G A T C G A C T A T G C G C T A C A T G A G C T C G T A G C T A
G T C A A C G T C G A T C G A T C G A T A G T C G A C T C G A T G A T C C G A T A C G T G A C T A C G T A C G T

eor-1/MA0543.1/Jaspar

Match Rank:5
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GTCTTCCTCAGTAW
TCTCTGCGTCTCTNN
A C G T A C T G G A C T A G T C G C A T C G A T G A T C G A T C G A C T A T G C G C T A C A T G A G C T C G T A G C T A
G A C T A T G C G A C T A G T C A C G T A T C G G A T C A T C G G A C T G A T C C G A T G A T C A G C T G A T C G A C T

GCR1/Literature(Harbison)/Yeast

Match Rank:6
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GTCTTCCTCAGTAW
GGCTTCCAC-----
A C T G G A C T A G T C G C A T C G A T G A T C G A T C G A C T A T G C G C T A C A T G A G C T C G T A G C T A
A C T G A C T G A G T C A C G T A C G T A G T C A G T C C G A T A G T C A C G T A C G T A C G T A C G T A C G T

Pp_0229(RRM)/Physcomitrella_patens-RNCMPT00229-PBM/HughesRNA

Match Rank:7
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GTCTTCCTCAGTAW
TGTTTTT--------
A C G T A C T G G A C T A G T C G C A T C G A T G A T C G A T C G A C T A T G C G C T A C A T G A G C T C G T A G C T A
C G A T A C T G C G A T A C G T A C G T A C G T C A G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Initiator/Drosophila-Promoters/Homer

Match Rank:8
Score:0.55
Offset:6
Orientation:forward strand
Alignment:GTCTTCCTCAGTAW
------NTCAGTYG
A C T G G A C T A G T C G C A T C G A T G A T C G A T C G A C T A T G C G C T A C A T G A G C T C G T A G C T A
A C G T A C G T A C G T A C G T A C G T A C G T G C A T A C G T A T G C C T G A C T A G G A C T G A T C A C T G

PRDM1/MA0508.3/Jaspar

Match Rank:9
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GTCTTCCTCAGTAW
TTCTTTCTCTT---
A C T G G A C T A G T C G C A T C G A T G A T C G A T C G A C T A T G C G C T A C A T G A G C T C G T A G C T A
G A C T G C A T G T A C C G A T G C A T C G A T G T A C C G A T G T A C G A C T G A C T A C G T A C G T A C G T

POU6F1(var.2)/MA1549.1/Jaspar

Match Rank:10
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:GTCTTCCTCAGTAW
----NNCTCATTAT
A C T G G A C T A G T C G C A T C G A T G A T C G A T C G A C T A T G C G C T A C A T G A G C T C G T A G C T A
A C G T A C G T A C G T A C G T G C T A A T G C T G A C C G A T T G A C G T C A A C G T A G C T C T G A G A C T