Information for 3-GGCYYTCACRSYCT (Motif 6)

A T C G A C T G A G T C A G T C A G T C A C G T A G T C C G T A A G T C C T A G A T G C A G C T A G T C A C G T
Reverse Opposite:
C G T A A C T G C T G A A T C G A G T C A C T G A C G T A C T G C G T A C T A G C T A G C T A G A G T C A T G C
p-value:1e-16
log p-value:-3.812e+01
Information Content per bp:1.849
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.53%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets78.1 +/- 39.1bp
Average Position of motif in Background93.8 +/- 6.5bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tb_0251(RRM)/Trypanosoma_brucei-RNCMPT00251-PBM/HughesRNA

Match Rank:1
Score:0.61
Offset:3
Orientation:forward strand
Alignment:GGCYYTCACRSYCT
---ATTCACA----
A T C G A C T G A G T C A G T C A G T C A C G T A G T C C G T A A G T C C T A G A T G C A G C T A G T C A C G T
A C G T A C G T A C G T G C T A C G A T A C G T A G T C C G T A A G T C C T G A A C G T A C G T A C G T A C G T

hkb/dmmpmm(Noyes)/fly

Match Rank:2
Score:0.59
Offset:3
Orientation:forward strand
Alignment:GGCYYTCACRSYCT-
---CNTCACGCCCCC
A T C G A C T G A G T C A G T C A G T C A C G T A G T C C G T A A G T C C T A G A T G C A G C T A G T C A C G T A C G T
A C G T A C G T A C G T T G A C G T A C C G A T T A G C G T C A G T A C T A C G G T A C A G T C G A T C G T A C A G T C

hkb/MA0450.1/Jaspar

Match Rank:3
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:GGCYYTCACRSYCT
-----TCACGCCCC
A T C G A C T G A G T C A G T C A G T C A C G T A G T C C G T A A G T C C T A G A T G C A G C T A G T C A C G T
A C G T A C G T A C G T A C G T A C G T C A G T G T A C G T C A A G T C A C T G A G T C A G T C A G T C G T A C

FHY3/MA0557.1/Jaspar

Match Rank:4
Score:0.59
Offset:4
Orientation:forward strand
Alignment:GGCYYTCACRSYCT--
----CTCACGCGCTCA
A T C G A C T G A G T C A G T C A G T C A C G T A G T C C G T A A G T C C T A G A T G C A G C T A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A T C G C A T T A G C G C T A G A T C A T C G A G T C C T A G T G A C A G C T G A T C C G T A

ZKSCAN5/MA1652.1/Jaspar

Match Rank:5
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GGCYYTCACRSYCT--
--NNCTCACCTCCTNN
A T C G A C T G A G T C A G T C A G T C A C G T A G T C C G T A A G T C C T A G A T G C A G C T A G T C A C G T A C G T A C G T
A C G T A C G T A G C T A G C T G T A C A G C T A G T C T C G A G A T C A G T C A C G T A G T C G A T C G A C T A G T C G A T C

PB0013.1_Eomes_1/Jaspar

Match Rank:6
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GGCYYTCACRSYCT---
NNTTTTCACACCTTNNN
A T C G A C T G A G T C A G T C A G T C A C G T A G T C C G T A A G T C C T A G A T G C A G C T A G T C A C G T A C G T A C G T A C G T
C T G A C T G A C G A T C A G T C A G T A G C T T G A C C T G A A G T C C T G A T A G C G A T C G A C T G A C T C G A T A G C T T G A C

GCR1/Literature(Harbison)/Yeast

Match Rank:7
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GGCYYTCACRSYCT
GGCTTCCAC-----
A T C G A C T G A G T C A G T C A G T C A C G T A G T C C G T A A G T C C T A G A T G C A G C T A G T C A C G T
A C T G A C T G A G T C A C G T A C G T A G T C A G T C C G A T A G T C A C G T A C G T A C G T A C G T A C G T

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:8
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:GGCYYTCACRSYCT
----TTMACACCTT
A T C G A C T G A G T C A G T C A G T C A C G T A G T C C G T A A G T C C T A G A T G C A G C T A G T C A C G T
A C G T A C G T A C G T A C G T C A G T G A C T G T A C C T G A A T G C T C G A T A G C G T A C G A C T G A C T

FAR1(FAR1)/col-FAR1-DAP-Seq(GSE60143)/Homer

Match Rank:9
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GGCYYTCACRSYCT
TKNNNYYCACGCGCY
A C G T A T C G A C T G A G T C A G T C A G T C A C G T A G T C C G T A A G T C C T A G A T G C A G C T A G T C A C G T
A G C T C A T G G C T A G C T A G C A T G A C T G A T C T A G C T C G A A G T C C A T G G A T C C A T G G T A C A G C T

At_0284(RRM)/Arabidopsis_thaliana-RNCMPT00284-PBM/HughesRNA

Match Rank:10
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:GGCYYTCACRSYCT
-----TCACACT--
A T C G A C T G A G T C A G T C A G T C A C G T A G T C C G T A A G T C C T A G A T G C A G C T A G T C A C G T
A C G T A C G T A C G T A C G T A C G T G A C T A G T C C G T A G T A C C G T A A G T C G A C T A C G T A C G T