Information for 5-GAAGAAGAHG (Motif 7)

A T C G T C G A G C T A A C T G C G T A C G T A T C A G T C G A G T A C T A C G
Reverse Opposite:
A T G C C A T G A G C T A G T C G C A T G C A T A G T C C G A T A G C T A T G C
p-value:1e-14
log p-value:-3.229e+01
Information Content per bp:1.713
Number of Target Sequences with motif42.0
Percentage of Target Sequences with motif9.21%
Number of Background Sequences with motif981.1
Percentage of Background Sequences with motif2.17%
Average Position of motif in Targets104.7 +/- 53.0bp
Average Position of motif in Background97.4 +/- 69.5bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown4/Arabidopsis-Promoters/Homer

Match Rank:1
Score:0.88
Offset:0
Orientation:reverse strand
Alignment:GAAGAAGAHG
RAAGAMGAMG
A T C G T C G A G C T A A C T G C G T A C G T A T C A G T C G A G T A C T A C G
C T A G C T G A T G C A C T A G C G T A G T A C C T A G T G C A G T C A T A C G

PABPN1(RRM)/Homo_sapiens-RNCMPT00157-PBM/HughesRNA

Match Rank:2
Score:0.80
Offset:2
Orientation:forward strand
Alignment:GAAGAAGAHG
--AGAAGAN-
A T C G T C G A G C T A A C T G C G T A C G T A T C A G T C G A G T A C T A C G
A C G T A C G T C G T A C T A G C G T A C G T A T C A G C G T A A G T C A C G T

TRA2(RRM)/Drosophila_melanogaster-RNCMPT00078-PBM/HughesRNA

Match Rank:3
Score:0.79
Offset:0
Orientation:forward strand
Alignment:GAAGAAGAHG
GAAGAAG---
A T C G T C G A G C T A A C T G C G T A C G T A T C A G T C G A G T A C T A C G
T C A G C G T A C T G A A T C G C G T A C G T A A T C G A C G T A C G T A C G T

ZML2(C2C2gata)/col-ZML2-DAP-Seq(GSE60143)/Homer

Match Rank:4
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:GAAGAAGAHG
GATGATGATG
A T C G T C G A G C T A A C T G C G T A C G T A T C A G T C G A G T A C T A C G
C T A G C T G A C G A T T C A G C T G A C A G T A T C G C T G A C A G T A T C G

REF2(RRM)/Drosophila_melanogaster-RNCMPT00059-PBM/HughesRNA

Match Rank:5
Score:0.71
Offset:2
Orientation:forward strand
Alignment:GAAGAAGAHG
--AGAAGGC-
A T C G T C G A G C T A A C T G C G T A C G T A T C A G T C G A G T A C T A C G
A C G T A C G T C G T A A C T G C G T A C G T A C T A G T C A G G T A C A C G T

LIN28A(CSD,Znf)/Homo_sapiens-RNCMPT00036-PBM/HughesRNA

Match Rank:6
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GAAGAAGAHG
NGGAGAA----
A C G T A T C G T C G A G C T A A C T G C G T A C G T A T C A G T C G A G T A C T A C G
G T A C A C T G A C T G C G T A A C T G C G T A C T G A A C G T A C G T A C G T A C G T

POL008.1_DCE_S_I/Jaspar

Match Rank:7
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GAAGAAGAHG
NGAAGC-----
A C G T A T C G T C G A G C T A A C T G C G T A C G T A T C A G T C G A G T A C T A C G
T A C G T A C G T G C A T C G A T A C G T G A C A C G T A C G T A C G T A C G T A C G T

RLR1/RLR1_YPD/[](Harbison)/Yeast

Match Rank:8
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---GAAGAAGAHG
AAAGAAGAAAAT-
A C G T A C G T A C G T A T C G T C G A G C T A A C T G C G T A C G T A T C A G T C G A G T A C T A C G
C T G A C G T A G C T A C T A G C G T A C T G A C T A G C G T A C G T A C G T A C G T A C A G T A C G T

PEND/MA0127.1/Jaspar

Match Rank:9
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GAAGAAGAHG-
-AATAAGAAGT
A T C G T C G A G C T A A C T G C G T A C G T A T C A G T C G A G T A C T A C G A C G T
A C G T T G C A C G T A A C G T G C T A T C G A C T A G G C T A G T C A T C A G A G C T

SRSF2(RRM)/Homo_sapiens-RNCMPT00072-PBM/HughesRNA

Match Rank:10
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GAAGAAGAHG
AGGAGANG---
A C G T A T C G T C G A G C T A A C T G C G T A C G T A T C A G T C G A G T A C T A C G
C G T A A C T G A C T G C G T A A C T G C G T A C T A G C T A G A C G T A C G T A C G T