Information for 3-ATCCWGACGGAR (Motif 3)

C T G A A C G T A G T C A G T C C G T A A C T G C G T A A G T C A C T G A C T G C G T A T C A G
Reverse Opposite:
A G T C A C G T A G T C A G T C A C T G A C G T A G T C C G A T A C T G C T A G C G T A A G C T
p-value:1e-43
log p-value:-9.931e+01
Information Content per bp:1.913
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif1.38%
Number of Background Sequences with motif5.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets108.6 +/- 44.5bp
Average Position of motif in Background120.9 +/- 40.0bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:ATCCWGACGGAR
--CCAGACAG--
C T G A A C G T A G T C A G T C C G T A A C T G C G T A A G T C A C T G A C T G C G T A T C A G
A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:2
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---ATCCWGACGGAR--
CAAATCCAGACATCACA
A C G T A C G T A C G T C T G A A C G T A G T C A G T C C G T A A C T G C G T A A G T C A C T G A C T G C G T A T C A G A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:ATCCWGACGGAR
--CCAGACRSVB
C T G A A C G T A G T C A G T C C G T A A C T G C G T A A G T C A C T G A C T G C G T A T C A G
A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

HAL9/MA0311.1/Jaspar

Match Rank:4
Score:0.64
Offset:7
Orientation:forward strand
Alignment:ATCCWGACGGAR
-------CGGAA
C T G A A C G T A G T C A G T C C G T A A C T G C G T A A G T C A C T G A C T G C G T A T C A G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G A C T G C G T A C T G A

RBM6(RRM)/Homo_sapiens-RNCMPT00170-PBM/HughesRNA

Match Rank:5
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-ATCCWGACGGAR
AATCCAG------
A C G T C T G A A C G T A G T C A G T C C G T A A C T G C G T A A G T C A C T G A C T G C G T A T C A G
G T C A C G T A A C G T A G T C A G T C C G T A C T A G A C G T A C G T A C G T A C G T A C G T A C G T

YKL222C/MA0428.1/Jaspar

Match Rank:6
Score:0.63
Offset:5
Orientation:forward strand
Alignment:ATCCWGACGGAR--
-----AACGGAAAT
C T G A A C G T A G T C A G T C C G T A A C T G C G T A A G T C A C T G A C T G C G T A T C A G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G T C A T C G A A G T C A C T G A C T G C T G A C T G A C G T A A C G T

Smad4/MA1153.1/Jaspar

Match Rank:7
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:ATCCWGACGGAR
-TCTAGACA---
C T G A A C G T A G T C A G T C C G T A A C T G C G T A A G T C A C T G A C T G C G T A T C A G
A C G T A C G T A G T C A G C T C G T A A C T G C G T A A G T C C T G A A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:8
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-ATCCWGACGGAR
ATGCCAGACN---
A C G T C T G A A C G T A G T C A G T C C G T A A C T G C G T A A G T C A C T G A C T G C G T A T C A G
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T

RBM5(RRM)/Homo_sapiens-RNCMPT00154-PBM/HughesRNA

Match Rank:9
Score:0.60
Offset:5
Orientation:forward strand
Alignment:ATCCWGACGGAR
-----GAAGGAG
C T G A A C G T A G T C A G T C C G T A A C T G C G T A A G T C A C T G A C T G C G T A T C A G
A C G T A C G T A C G T A C G T A C G T A T C G C G T A T C G A A T C G A T C G C T G A C T A G

RBM5(Znf)/Homo_sapiens-RNCMPT00055-PBM/HughesRNA

Match Rank:10
Score:0.60
Offset:5
Orientation:forward strand
Alignment:ATCCWGACGGAR
-----GAAGGAA
C T G A A C G T A G T C A G T C C G T A A C T G C G T A A G T C A C T G A C T G C G T A T C A G
A C G T A C G T A C G T A C G T A C G T C T A G C G T A C T G A A C T G A C T G C G T A C T G A