Information for 1-CTCCTCCTSCAG (Motif 1)

A G T C C G A T A T G C T G A C C G A T A T G C G A T C G C A T A T G C T G A C G C T A A T C G
Reverse Opposite:
T A G C C G A T A C T G T A C G C G T A C T A G T A C G G C T A A C T G T A C G G C T A T C A G
p-value:1e-55
log p-value:-1.289e+02
Information Content per bp:1.592
Number of Target Sequences with motif789.0
Percentage of Target Sequences with motif46.06%
Number of Background Sequences with motif12895.7
Percentage of Background Sequences with motif28.02%
Average Position of motif in Targets97.0 +/- 46.0bp
Average Position of motif in Background101.0 +/- 72.8bp
Strand Bias (log2 ratio + to - strand density)-1.4
Multiplicity (# of sites on avg that occur together)1.51
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:1
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--CTCCTCCTSCAG------
GCCTCCTCCMTCWGACTGKS
A C G T A C G T A G T C C G A T A T G C T G A C C G A T A T G C G A T C G C A T A T G C T G A C G C T A A T C G A C G T A C G T A C G T A C G T A C G T A C G T
T A C G G A T C G A T C G A C T A G T C A G T C G C A T A G T C A G T C G T A C A G C T A G T C G C T A T C A G C T G A A G T C G A C T T A C G A C T G T A G C

PF10_0068(RRM)/Plasmodium_falciparum-RNCMPT00199-PBM/HughesRNA

Match Rank:2
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:CTCCTCCTSCAG
---TTCCTCCN-
A G T C C G A T A T G C T G A C C G A T A T G C G A T C G C A T A T G C T G A C G C T A A T C G
A C G T A C G T A C G T A G C T A C G T A G T C A G T C G C A T A G T C A G T C G C T A A C G T

SRSF1(RRM)/Homo_sapiens-RNCMPT00163-PBM/HughesRNA

Match Rank:3
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:CTCCTCCTSCAG
---CTCCTCC--
A G T C C G A T A T G C T G A C C G A T A T G C G A T C G C A T A T G C T G A C G C T A A T C G
A C G T A C G T A C G T A T G C A C G T A G T C A G T C A G C T A G T C A G T C A C G T A C G T

TF3A(C2H2)/col-TF3A-DAP-Seq(GSE60143)/Homer

Match Rank:4
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--CTCCTCCTSCAG-
NNNWCCTCCTCHHNN
A C G T A C G T A G T C C G A T A T G C T G A C C G A T A T G C G A T C G C A T A T G C T G A C G C T A A T C G A C G T
C A G T G C A T G A T C G C A T G A T C G A T C G A C T G T A C G T A C G A C T G A T C G A C T G A C T A G T C G A T C

SF2(RRM)/Drosophila_melanogaster-RNCMPT00066-PBM/HughesRNA

Match Rank:5
Score:0.67
Offset:4
Orientation:reverse strand
Alignment:CTCCTCCTSCAG
----TCCTCCN-
A G T C C G A T A T G C T G A C C G A T A T G C G A T C G C A T A T G C T G A C G C T A A T C G
A C G T A C G T A C G T A C G T A G C T A G T C A G T C C G A T A G T C A G T C G A C T A C G T

NCU02404(RRM)/Neurospora_crassa-RNCMPT00238-PBM/HughesRNA

Match Rank:6
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:CTCCTCCTSCAG
---TTCCTCC--
A G T C C G A T A T G C T G A C C G A T A T G C G A T C G C A T A T G C T G A C G C T A A T C G
A C G T A C G T A C G T G A C T C G A T A G T C A G T C C G A T A G T C A G T C A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:CTCCTCCTSCAG--
--CCCCCTGCTGTG
A G T C C G A T A T G C T G A C C G A T A T G C G A T C G C A T A T G C T G A C G C T A A T C G A C G T A C G T
A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

Zic1::Zic2/MA1628.1/Jaspar

Match Rank:8
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:CTCCTCCTSCAG--
---NNCCTGCTGNG
A G T C C G A T A T G C T G A C C G A T A T G C G A T C G C A T A T G C T G A C G C T A A T C G A C G T A C G T
A C G T A C G T A C G T A G T C A T G C T G A C T A G C A G C T T C A G A T G C A C G T T C A G A G C T A T C G

Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer

Match Rank:9
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CTCCTCCTSCAG--
--CCYCCYGCTGDG
A G T C C G A T A T G C T G A C C G A T A T G C G A T C G C A T A T G C T G A C G C T A A T C G A C G T A C G T
A C G T A C G T A G T C A T G C G A T C A G T C G T A C G A C T C T A G A G T C C G A T A C T G C A G T A C T G

Zic2/MA1629.1/Jaspar

Match Rank:10
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:CTCCTCCTSCAG----
--CCCCCTGCTGTGNN
A G T C C G A T A T G C T G A C C G A T A T G C G A T C G C A T A T G C T G A C G C T A A T C G A C G T A C G T A C G T A C G T
A C G T A C G T A G T C A G T C G A T C T A G C G T A C G A C T T C A G A T G C C A G T A T C G C G A T A C T G G T C A A C T G