Information for 1-CAGGTA (Motif 1)

G T A C C T G A A C T G A C T G C G A T G T C A
Reverse Opposite:
C A G T C G T A A G T C A G T C A G C T A C T G
p-value:1e-30
log p-value:-7.007e+01
Information Content per bp:1.846
Number of Target Sequences with motif517.0
Percentage of Target Sequences with motif61.18%
Number of Background Sequences with motif19705.0
Percentage of Background Sequences with motif41.36%
Average Position of motif in Targets107.5 +/- 55.5bp
Average Position of motif in Background100.5 +/- 66.2bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.36
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

vfl/MA1462.1/Jaspar

Match Rank:1
Score:0.93
Offset:-3
Orientation:forward strand
Alignment:---CAGGTA---
CTGCAGGTAGGC
A C G T A C G T A C G T G T A C C T G A A C T G A C T G C G A T G T C A A C G T A C G T A C G T
G T A C G C A T C A T G A G T C C T G A T A C G T C A G G A C T T G C A T C A G T C A G G T A C

ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer

Match Rank:2
Score:0.92
Offset:-1
Orientation:forward strand
Alignment:-CAGGTA---
VCAGGTRDRY
A C G T G T A C C T G A A C T G A C T G C G A T G T C A A C G T A C G T A C G T
T G C A G T A C C G T A A T C G A C T G A C G T C T A G C G A T T C G A A G T C

Tag/dmmpmm(Papatsenko)/fly

Match Rank:3
Score:0.89
Offset:0
Orientation:forward strand
Alignment:CAGGTA-
CAGGTAG
G T A C C T G A A C T G A C T G C G A T G T C A A C G T
A G T C C G T A A C T G A T C G A G C T C G T A C T A G

Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer

Match Rank:4
Score:0.89
Offset:-1
Orientation:reverse strand
Alignment:-CAGGTA---
WCAGGTAGVM
A C G T G T A C C T G A A C T G A C T G C G A T G T C A A C G T A C G T A C G T
G C A T A G T C C G T A A C T G A C T G A C G T C G T A C T A G T A G C T G A C

NGA4(ABI3VP1)/col-NGA4-DAP-Seq(GSE60143)/Homer

Match Rank:5
Score:0.89
Offset:-4
Orientation:forward strand
Alignment:----CAGGTA
TKNTCAGGTG
A C G T A C G T A C G T A C G T G T A C C T G A A C T G A C T G C G A T G T C A
G A C T A C G T C G A T A G C T A G T C C G T A A C T G A C T G C G A T C T A G

grh/dmmpmm(Papatsenko)/fly

Match Rank:6
Score:0.87
Offset:-2
Orientation:reverse strand
Alignment:--CAGGTA
AGCAGGTA
A C G T A C G T G T A C C T G A A C T G A C T G C G A T G T C A
T C G A T A C G G T A C C G T A A C T G T C A G G C A T G C T A

RAV1(2)(AP2/EREBP)/Arabidopsis thaliana/AthaMap

Match Rank:7
Score:0.83
Offset:-4
Orientation:reverse strand
Alignment:----CAGGTA--
GNNTCAGGTGAN
A C G T A C G T A C G T A C G T G T A C C T G A A C T G A C T G C G A T G T C A A C G T A C G T
C T A G A T G C A T G C A G C T A G T C C G T A A C T G T C A G G C A T C A T G C T G A C G A T

RAV1(var.2)/MA0583.1/Jaspar

Match Rank:8
Score:0.83
Offset:-4
Orientation:reverse strand
Alignment:----CAGGTA--
GNNTCAGGTGAN
A C G T A C G T A C G T A C G T G T A C C T G A A C T G A C T G C G A T G T C A A C G T A C G T
C T A G A T G C A T G C A G C T A G T C C G T A A C T G T C A G G C A T C A T G C T G A C G A T

sna/dmmpmm(Papatsenko)/fly

Match Rank:9
Score:0.83
Offset:-1
Orientation:forward strand
Alignment:-CAGGTA-
GCAGGTGG
A C G T G T A C C T G A A C T G A C T G C G A T G T C A A C G T
C T A G A G T C C G T A C T A G C T A G C A G T A C T G A T C G

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.82
Offset:-2
Orientation:reverse strand
Alignment:--CAGGTA--
NNCAGGTGNN
A C G T A C G T G T A C C T G A A C T G A C T G C G A T G T C A A C G T A C G T
C A G T T A C G A G T C C G T A A C T G A C T G A C G T A C T G A C G T T A C G