Information for 2-AACACACACAGAAG (Motif 2)

C G T A T C G A A T G C C G T A A T G C C G T A A T G C C G T A A G T C C G T A C T A G T G C A C G T A A T C G
Reverse Opposite:
A T G C A C G T A C G T A G T C C G A T C T A G A C G T A T C G C G A T A T C G A C G T A T C G A C G T C G A T
p-value:1e-9
log p-value:-2.227e+01
Information Content per bp:1.756
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif8.64%
Number of Background Sequences with motif91.1
Percentage of Background Sequences with motif0.18%
Average Position of motif in Targets119.0 +/- 32.2bp
Average Position of motif in Background99.3 +/- 57.3bp
Strand Bias (log2 ratio + to - strand density)-1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SeqBias: CA-repeat

Match Rank:1
Score:0.69
Offset:2
Orientation:forward strand
Alignment:AACACACACAGAAG
--CACACACACA--
C G T A T C G A A T G C C G T A A T G C C G T A A T G C C G T A A G T C C G T A C T A G T G C A C G T A A T C G
A C G T A C G T G T A C G T C A G T A C G T C A G T A C G T C A G T A C G T C A G T A C G T C A A C G T A C G T

ARET(RRM)/Drosophila_melanogaster-RNCMPT00270-PBM/HughesRNA

Match Rank:2
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:AACACACACAGAAG
---ACACACA----
C G T A T C G A A T G C C G T A A T G C C G T A A T G C C G T A A G T C C G T A C T A G T G C A C G T A A T C G
A C G T A C G T A C G T C G T A G T A C C G T A G A T C C G T A G T A C C G T A A C G T A C G T A C G T A C G T

SM(RRM)/Drosophila_melanogaster-RNCMPT00069-PBM/HughesRNA

Match Rank:3
Score:0.69
Offset:3
Orientation:forward strand
Alignment:AACACACACAGAAG
---ACACACA----
C G T A T C G A A T G C C G T A A T G C C G T A A T G C C G T A A G T C C G T A C T A G T G C A C G T A A T C G
A C G T A C G T A C G T C G T A A T G C C G T A A G T C C T G A T G A C T G C A A C G T A C G T A C G T A C G T

PAPI(KH)/Drosophila_melanogaster-RNCMPT00011-PBM/HughesRNA

Match Rank:4
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:AACACACACAGAAG
---ACACACA----
C G T A T C G A A T G C C G T A A T G C C G T A A T G C C G T A A G T C C G T A C T A G T G C A C G T A A T C G
A C G T A C G T A C G T G T C A G T A C C G T A G T A C C G T A G T A C G T C A A C G T A C G T A C G T A C G T

BRUNOL5(RRM)/Homo_sapiens-RNCMPT00166-PBM/HughesRNA

Match Rank:5
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:AACACACACAGAAG
---ACACACA----
C G T A T C G A A T G C C G T A A T G C C G T A A T G C C G T A A G T C C G T A C T A G T G C A C G T A A T C G
A C G T A C G T A C G T G T C A G T A C G T C A G T A C C G T A G T A C C G T A A C G T A C G T A C G T A C G T

ARET(RRM)/Drosophila_melanogaster-RNCMPT00114-PBM/HughesRNA

Match Rank:6
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:AACACACACAGAAG
--AACACACA----
C G T A T C G A A T G C C G T A A T G C C G T A A T G C C G T A A G T C C G T A C T A G T G C A C G T A A T C G
A C G T A C G T G T C A G T C A G T A C C G T A G T A C G T C A G T A C C G T A A C G T A C G T A C G T A C G T

ARET(RRM)/Drosophila_melanogaster-RNCMPT00003-PBM/HughesRNA

Match Rank:7
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:AACACACACAGAAG
---ACACACA----
C G T A T C G A A T G C C G T A A T G C C G T A A T G C C G T A A G T C C G T A C T A G T G C A C G T A A T C G
A C G T A C G T A C G T G T C A G T A C C G T A G T A C G T C A G T A C C G T A A C G T A C G T A C G T A C G T

Rbm38(RRM)/Danio_rerio-RNCMPT00283-PBM/HughesRNA

Match Rank:8
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:AACACACACAGAAG
--CACACAC-----
C G T A T C G A A T G C C G T A A T G C C G T A A T G C C G T A A G T C C G T A C T A G T G C A C G T A A T C G
A C G T A C G T G A T C G T C A G T A C C G T A A G T C C G T A G T A C A C G T A C G T A C G T A C G T A C G T

CNOT4(RRM)/Drosophila_melanogaster-RNCMPT00008-PBM/HughesRNA

Match Rank:9
Score:0.67
Offset:3
Orientation:forward strand
Alignment:AACACACACAGAAG
---ACACATA----
C G T A T C G A A T G C C G T A A T G C C G T A A T G C C G T A A G T C C G T A C T A G T G C A C G T A A T C G
A C G T A C G T A C G T C G T A T A G C C G T A G T A C C G T A G C A T C G T A A C G T A C G T A C G T A C G T

HNRNPL(RRM)/Homo_sapiens-RNCMPT00027-PBM/HughesRNA

Match Rank:10
Score:0.67
Offset:3
Orientation:forward strand
Alignment:AACACACACAGAAG
---ACACACA----
C G T A T C G A A T G C C G T A A T G C C G T A A T G C C G T A A G T C C G T A C T A G T G C A C G T A A T C G
A C G T A C G T A C G T G T C A G T A C C G T A G A T C C G T A G T A C G T C A A C G T A C G T A C G T A C G T