Information for 2-TGAAGA (Motif 4)

A G C T A C T G C G T A C T G A A C T G C G T A
Reverse Opposite:
A C G T A G T C A G C T C G A T A G T C C T G A
p-value:1e-21
log p-value:-4.934e+01
Information Content per bp:1.888
Number of Target Sequences with motif458.0
Percentage of Target Sequences with motif54.20%
Number of Background Sequences with motif18018.3
Percentage of Background Sequences with motif37.82%
Average Position of motif in Targets99.5 +/- 52.9bp
Average Position of motif in Background99.9 +/- 68.0bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.44
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TRA2(RRM)/Drosophila_melanogaster-RNCMPT00078-PBM/HughesRNA

Match Rank:1
Score:0.74
Offset:1
Orientation:forward strand
Alignment:TGAAGA--
-GAAGAAG
A G C T A C T G C G T A C T G A A C T G C G T A A C G T A C G T
A C G T T C A G C G T A C T G A A T C G C G T A C G T A A T C G

POL008.1_DCE_S_I/Jaspar

Match Rank:2
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:TGAAGA
NGAAGC
A G C T A C T G C G T A C T G A A C T G C G T A
T A C G T A C G T G C A T C G A T A C G T G A C

PABPN1(RRM)/Homo_sapiens-RNCMPT00157-PBM/HughesRNA

Match Rank:3
Score:0.69
Offset:0
Orientation:forward strand
Alignment:TGAAGA-
AGAAGAN
A G C T A C T G C G T A C T G A A C T G C G T A A C G T
C G T A C T A G C G T A C G T A T C A G C G T A A G T C

ZML2(C2C2gata)/col-ZML2-DAP-Seq(GSE60143)/Homer

Match Rank:4
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--TGAAGA--
GATGATGATG
A C G T A C G T A G C T A C T G C G T A C T G A A C T G C G T A A C G T A C G T
C T A G C T G A C G A T T C A G C T G A C A G T A T C G C T G A C A G T A T C G

RBM45(RRM)/Homo_sapiens-RNCMPT00241-PBM/HughesRNA

Match Rank:5
Score:0.67
Offset:1
Orientation:forward strand
Alignment:TGAAGA--
-GACGACA
A G C T A C T G C G T A C T G A A C T G C G T A A C G T A C G T
A C G T A C T G C G T A T A G C A C T G C T G A G T A C T G C A

At2g41835(C2H2)/col-At2g41835-DAP-Seq(GSE60143)/Homer

Match Rank:6
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--TGAAGA
TTTGAAAA
A C G T A C G T A G C T A C T G C G T A C T G A A C T G C G T A
G C A T A C G T A C G T A T C G C G T A C G T A C G T A C G T A

Unknown4/Arabidopsis-Promoters/Homer

Match Rank:7
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--TGAAGA--
RAAGAMGAMG
A C G T A C G T A G C T A C T G C G T A C T G A A C T G C G T A A C G T A C G T
C T A G C T G A T G C A C T A G C G T A G T A C C T A G T G C A G T C A T A C G

vvl/dmmpmm(Bigfoot)/fly

Match Rank:8
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:TGAAGA
TGAATA
A G C T A C T G C G T A C T G A A C T G C G T A
A C G T T C A G G T C A C G T A A C G T C G T A

ZmHOX2a(1)(HD-HOX)/Zea mays/AthaMap

Match Rank:9
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:TGAAGA-
TTAGGAC
A G C T A C T G C G T A C T G A A C T G C G T A A C G T
C G A T A G C T C G T A A C T G A C T G C G T A G A T C

REF2(RRM)/Drosophila_melanogaster-RNCMPT00059-PBM/HughesRNA

Match Rank:10
Score:0.65
Offset:0
Orientation:forward strand
Alignment:TGAAGA-
AGAAGGC
A G C T A C T G C G T A C T G A A C T G C G T A A C G T
C G T A A C T G C G T A C G T A C T A G T C A G G T A C